F406318

General Info

Members Datasets Scaffolds Average Seq Length
322 200 644 272

Family's Representative Sequence

Representative Sequence 3300005366|Ga0070659_100317407|Ga0070659_1003174071
Length 313
Sequence MLTDRTDDRWRKHDTIACEDETPRSRVDGARWRPAHLSVTWRGSLALDYSLRDGHTIVRDRHDGPLRVLRSLHPEVGVCHSVLVHPPGGLVGGDALTISVALGEGAHALVTTPGATRFYRSIGSEASQSLEVTAECGSRLEWLPLETIAYSGCLASTRMRFNLAQGSEMIGWDVTALGLPASARPFESGRLTQTIELPARWLDHGTISAADRRLLDSPLGWAGRRVLATMWFASGAALAGSRREELLAAARAQIGGHPLRAMTGATAPHDDVVVVRALAERVEPAMELMQRIWRQWRSIAWSMAGTSPRIWST

Samples

Sample ID Description Type Environment
1 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
4 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
5 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
6 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
10 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
11 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
12 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
13 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
14 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
15 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
16 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
17 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
18 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
19 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
20 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
21 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
22 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
23 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
24 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
25 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
26 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
27 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
28 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
29 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
30 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
31 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
32 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
33 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
34 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
35 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
36 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
37 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
38 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
39 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
40 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
41 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
42 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
43 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
44 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
46 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
47 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
48 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
49 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
50 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
52 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
53 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
54 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
55 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
56 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
57 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
58 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
59 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
60 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
61 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
62 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
63 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
64 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
65 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
66 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
67 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
68 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
69 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
70 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
71 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
72 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
73 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
74 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
77 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
116 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
120 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
121 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
122 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
123 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
124 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
125 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
126 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
127 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
128 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
129 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
130 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
131 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
132 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
133 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
134 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
135 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
136 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
137 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
138 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
139 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
140 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
141 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
142 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
143 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
144 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
145 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
146 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
147 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
148 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
149 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
150 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
151 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
152 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
153 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
154 3300042132 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_070716_133 Metagenome Rhizosphere
155 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
156 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
157 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
158 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
159 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
160 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
161 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
162 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
163 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
164 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
165 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
166 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
167 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
168 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
169 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
170 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
171 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
172 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
173 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
174 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
175 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
176 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
177 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
178 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
179 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
180 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
181 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
182 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
183 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
184 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
185 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
186 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
187 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
188 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
189 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
190 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
191 2643221570 Acidovorax sp. Root568 Isolate Unclassified
192 2643221596 Acidovorax sp. Root70 Isolate Unclassified
193 2643221609 Acidovorax sp. Root217 Isolate Unclassified
194 2643221611 Acidovorax sp. Root219 Isolate Unclassified
195 2643221652 Acidovorax sp. Root402 Isolate Unclassified
196 2738543012 Acidovorax sp. CF301 Isolate Unclassified
197 2816332133 Acidovorax radicis 2721A Isolate Unclassified
198 2842718218 Acidovorax sp. R-73343 Isolate Unclassified
199 2974320154 Acidovorax wautersii SORGH_AS 335 Isolate Unclassified
200 2990710928 Acidovorax delafieldii SLBN-75 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.89
Metatranscriptomes 0
Isolates 3.11

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.9
Nodule 0
Rhizoplane 1.24
Rhizosphere 83.85
Stem 0
Stem Tuber 0
Unclassified 1.55

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070659_100317407 3300005366 Bacteria 1302
2 rootL2_10147774 3300003322 Bacteria 2000
3 Ga0055534_1002254 3300003784 Bacteria 6817
4 Ga0055540_1015537 3300003792 Bacteria 2209
5 Ga0065165_1037071 3300005262 Bacteria 1481
6 Ga0070676_10339147 3300005328 Bacteria 1030
7 Ga0070670_100065548 3300005331 Bacteria 3116
8 Ga0070670_100082119 3300005331 Bacteria 2769
9 Ga0070670_100138018 3300005331 Bacteria 2108
10 Ga0068869_100000464 3300005334 Bacteria 22438
11 Ga0068869_100017548 3300005334 Bacteria 4853
12 Ga0068869_100037537 3300005334 Bacteria 3445
13 Ga0070682_100267140 3300005337 Bacteria 1241
14 Ga0068868_100001157 3300005338 Bacteria 18078
15 Ga0068868_100079715 3300005338 Bacteria 2623
16 Ga0070660_100016308 3300005339 Bacteria 5390
17 Ga0070661_100117504 3300005344 Bacteria 1989
18 Ga0070668_100098060 3300005347 Bacteria 2319
19 Ga0070669_100080290 3300005353 Bacteria 2428
20 Ga0070669_100144358 3300005353 Unclassified 1838
21 Ga0070675_100001801 3300005354 Bacteria 15832
22 Ga0070675_100029917 3300005354 Bacteria 4394
23 Ga0070675_100067899 3300005354 Bacteria 2951
24 Ga0070671_100134436 3300005355 Bacteria 2084
25 Ga0070674_100055957 3300005356 Bacteria 2734
26 Ga0070674_100139506 3300005356 Bacteria 1818
27 Ga0070674_100354599 3300005356 Bacteria 1186
28 Ga0070673_100192968 3300005364 Bacteria 1750
29 Ga0070659_100017714 3300005366 Bacteria 5365
30 Ga0070659_100259023 3300005366 Bacteria 1443
31 Ga0070667_100006750 3300005367 Bacteria 9531
32 Ga0070667_100125570 3300005367 Bacteria 2236
33 Ga0070667_100163863 3300005367 Bacteria 1960
34 Ga0070667_100379356 3300005367 Bacteria 1284
35 Ga0070701_10055221 3300005438 Bacteria 2074
36 Ga0070701_10146469 3300005438 Bacteria 1356
37 Ga0070700_100031853 3300005441 Bacteria 3164
38 Ga0070678_100005974 3300005456 Bacteria 7092
39 Ga0070678_100091161 3300005456 Bacteria 2338
40 Ga0070678_100151673 3300005456 Bacteria 1867
41 Ga0070678_100157612 3300005456 Bacteria 1835
42 Ga0070662_100037375 3300005457 Bacteria 3443
43 Ga0070662_100062749 3300005457 Bacteria 2716
44 Ga0068867_100095358 3300005459 Bacteria 2263
45 Ga0068867_100260137 3300005459 Bacteria 1414
46 Ga0070679_100578075 3300005530 Bacteria 1067
47 Ga0070684_100403535 3300005535 Bacteria 1260
48 Ga0068853_100023336 3300005539 Bacteria 5178
49 Ga0068853_100443940 3300005539 Bacteria 1219
50 Ga0070672_100000535 3300005543 Bacteria 22337
51 Ga0070672_100015927 3300005543 Bacteria 5370
52 Ga0070672_100039549 3300005543 Bacteria 3613
53 Ga0070693_100019340 3300005547 Bacteria 3567
54 Ga0070693_100057815 3300005547 Bacteria 2243
55 Ga0070665_100014357 3300005548 Bacteria 7951
56 Ga0070665_100308423 3300005548 Bacteria 1586
57 Ga0070665_100336659 3300005548 Bacteria 1514
58 Ga0068855_100058339 3300005563 Bacteria 4521
59 Ga0068855_100233241 3300005563 Bacteria 2059
60 Ga0070664_100175841 3300005564 Bacteria 1900
61 Ga0068854_100017820 3300005578 Bacteria 4760
62 Ga0068854_100022161 3300005578 Bacteria 4322
63 Ga0068854_100103059 3300005578 Bacteria 2142
64 Ga0068854_100281924 3300005578 Bacteria 1338
65 Ga0068852_100007474 3300005616 Bacteria 7974
66 Ga0068852_100041639 3300005616 Bacteria 3883
67 Ga0068852_100074837 3300005616 Bacteria 2984
68 Ga0068852_100089127 3300005616 Bacteria 2756
69 Ga0068852_100375527 3300005616 Bacteria 1394
70 Ga0068859_100035116 3300005617 Bacteria 5030
71 Ga0068859_100041634 3300005617 Bacteria 4614
72 Ga0068859_100148619 3300005617 Bacteria 2419
73 Ga0068864_100011769 3300005618 Bacteria 7227
74 Ga0068864_100026320 3300005618 Bacteria 4906
75 Ga0068864_100043505 3300005618 Bacteria 3845
76 Ga0068864_100477137 3300005618 Bacteria 1197
77 Ga0068861_100015935 3300005719 Bacteria 5306
78 Ga0068870_10049885 3300005840 Bacteria 2210
79 Ga0068863_100035145 3300005841 Bacteria 4774
80 Ga0068863_100051014 3300005841 Bacteria 3922
81 Ga0068863_100086629 3300005841 Bacteria 2968
82 Ga0068858_100032986 3300005842 Bacteria 4809
83 Ga0068858_100070383 3300005842 Bacteria 3243
84 Ga0068858_100074050 3300005842 Bacteria 3162
85 Ga0068860_100003734 3300005843 Bacteria 15664
86 Ga0068860_100033660 3300005843 Bacteria 4916
87 Ga0068860_100043992 3300005843 Bacteria 4258
88 Ga0068860_100048642 3300005843 Bacteria 4041
89 Ga0068860_100198013 3300005843 Bacteria 1946
90 Ga0068862_100136011 3300005844 Bacteria 2178
91 Ga0075365_10030760 3300006038 Bacteria 3441
92 Ga0097621_100011335 3300006237 Bacteria 6558
93 Ga0097621_100063536 3300006237 Bacteria 3034
94 Ga0068871_100056273 3300006358 Bacteria 3196
95 Ga0075430_100080994 3300006846 Bacteria 2720
96 Ga0075429_100002266 3300006880 Bacteria 16128
97 Ga0097620_100035114 3300006931 Bacteria 5030
98 Ga0097620_100041634 3300006931 Bacteria 4614
99 Ga0097620_100148615 3300006931 Bacteria 2419
100 Ga0075435_100194264 3300007076 Bacteria 1718
101 Ga0111539_10467829 3300009094 Bacteria 1468
102 Ga0105245_10059383 3300009098 Bacteria 3444
103 Ga0105245_10136178 3300009098 Bacteria 2308
104 Ga0105245_10150926 3300009098 Bacteria 2197
105 Ga0105247_10226395 3300009101 Bacteria 1268
106 Ga0105243_10050782 3300009148 Bacteria 3278
107 Ga0105242_10014235 3300009176 Bacteria 6159
108 Ga0105248_10169420 3300009177 Bacteria 2461
109 Ga0105248_10351946 3300009177 Bacteria 1658
110 Ga0105237_10297582 3300009545 Bacteria 1617
111 Ga0105249_10101261 3300009553 Bacteria 2709
112 Ga0157370_10082179 3300013104 Bacteria 3030
113 Ga0157370_10164694 3300013104 Bacteria 2062
114 Ga0157369_10256524 3300013105 Bacteria 1824
115 Ga0157374_10035458 3300013296 Bacteria 4564
116 Ga0157378_10375695 3300013297 Bacteria 1395
117 Ga0163162_10086356 3300013306 Bacteria 3215
118 Ga0163162_10551689 3300013306 Unclassified 1281
119 Ga0157372_10196619 3300013307 Bacteria 2336
120 Ga0157375_10024111 3300013308 Bacteria 5626
121 Ga0157375_10058566 3300013308 Bacteria 3812
122 Ga0157375_10124117 3300013308 Bacteria 2695
123 Ga0163163_10296382 3300014325 Unclassified 1669
124 Ga0157380_10004961 3300014326 Bacteria 9272
125 Ga0157380_10010895 3300014326 Bacteria 6555
126 Ga0157377_10002890 3300014745 Bacteria 7677
127 Ga0157379_10010802 3300014968 Bacteria 7961
128 Ga0157379_10027535 3300014968 Bacteria 5061
129 Ga0157379_10131919 3300014968 Bacteria 2249
130 Ga0157379_10338327 3300014968 Bacteria 1376
131 Ga0157376_10009598 3300014969 Bacteria 7038
132 Ga0163161_10064135 3300017792 Bacteria 2679
133 Ga0213872_10072328 3300021361 Bacteria 1553
134 Ga0209673_1024950 3300025273 Bacteria 1998
135 Ga0209130_1008939 3300025284 Bacteria 2904
136 Ga0209675_1009540 3300025291 Bacteria 3419
137 Ga0209676_1006734 3300025292 Bacteria 5589
138 Ga0209564_1020868 3300025295 Bacteria 2382
139 Ga0209051_1004969 3300025303 Bacteria 7946
140 Ga0209257_1006635 3300025304 Bacteria 7358
141 Ga0207656_10122047 3300025321 Bacteria 1214
142 Ga0207682_10002043 3300025893 Bacteria 9135
143 Ga0207682_10009265 3300025893 Bacteria 3890
144 Ga0207682_10017228 3300025893 Bacteria 2821
145 Ga0207642_10002232 3300025899 Bacteria 6017
146 Ga0207680_10196438 3300025903 Bacteria 1372
147 Ga0207680_10241609 3300025903 Bacteria 1245
148 Ga0207645_10012965 3300025907 Bacteria 5636
149 Ga0207645_10316257 3300025907 Bacteria 1041
150 Ga0207643_10059293 3300025908 Bacteria 2183
151 Ga0207705_10143090 3300025909 Bacteria 1787
152 Ga0207671_10201548 3300025914 Bacteria 1554
153 Ga0207662_10037655 3300025918 Bacteria 2832
154 Ga0207657_10029332 3300025919 Bacteria 5010
155 Ga0207649_10039172 3300025920 Bacteria 2872
156 Ga0207649_10074357 3300025920 Bacteria 2180
157 Ga0207649_10339013 3300025920 Bacteria 1109
158 Ga0207681_10000205 3300025923 Bacteria 47034
159 Ga0207681_10128322 3300025923 Unclassified 1871
160 Ga0207650_10021208 3300025925 Bacteria 4593
161 Ga0207650_10077284 3300025925 Bacteria 2516
162 Ga0207650_10082923 3300025925 Bacteria 2435
163 Ga0207650_10156835 3300025925 Bacteria 1800
164 Ga0207650_10181005 3300025925 Bacteria 1679
165 Ga0207659_10003663 3300025926 Bacteria 9257
166 Ga0207659_10096382 3300025926 Bacteria 2220
167 Ga0207659_10499962 3300025926 Bacteria 1029
168 Ga0207687_10025354 3300025927 Bacteria 3968
169 Ga0207687_10033447 3300025927 Bacteria 3488
170 Ga0207644_10118081 3300025931 Bacteria 2015
171 Ga0207690_10038263 3300025932 Bacteria 3120
172 Ga0207706_10000933 3300025933 Bacteria 29885
173 Ga0207706_10088000 3300025933 Bacteria 2731
174 Ga0207669_10007121 3300025937 Bacteria 5151
175 Ga0207669_10112651 3300025937 Bacteria 1827
176 Ga0207669_10386549 3300025937 Bacteria 1092
177 Ga0207704_10001897 3300025938 Bacteria 9361
178 Ga0207704_10102945 3300025938 Bacteria 1908
179 Ga0207691_10008779 3300025940 Bacteria 9693
180 Ga0207691_10038127 3300025940 Bacteria 4447
181 Ga0207691_10112282 3300025940 Bacteria 2422
182 Ga0207691_10279848 3300025940 Bacteria 1435
183 Ga0207691_10293613 3300025940 Bacteria 1397
184 Ga0207711_10159634 3300025941 Bacteria 2039
185 Ga0207711_10369572 3300025941 Bacteria 1330
186 Ga0207689_10000150 3300025942 Bacteria 60037
187 Ga0207689_10012442 3300025942 Bacteria 7271
188 Ga0207661_10064955 3300025944 Bacteria 2961
189 Ga0207679_10090496 3300025945 Bacteria 2366
190 Ga0207667_10210789 3300025949 Unclassified 1991
191 Ga0207651_10018265 3300025960 Bacteria 4168
192 Ga0207712_10052734 3300025961 Bacteria 2850
193 Ga0207668_10028131 3300025972 Bacteria 3672
194 Ga0207668_10090836 3300025972 Bacteria 2242
195 Ga0207640_10258425 3300025981 Bacteria 1356
196 Ga0207640_10430787 3300025981 Bacteria 1082
197 Ga0207658_10019536 3300025986 Bacteria 4686
198 Ga0207658_10024557 3300025986 Bacteria 4218
199 Ga0207658_10049129 3300025986 Bacteria 3098
200 Ga0207677_10009321 3300026023 Bacteria 5521
201 Ga0207677_10020290 3300026023 Bacteria 4032
202 Ga0207677_10207104 3300026023 Bacteria 1563
203 Ga0207703_10030511 3300026035 Bacteria 4262
204 Ga0207678_10065894 3300026067 Bacteria 3110
205 Ga0207678_10187373 3300026067 Bacteria 1768
206 Ga0207708_10022773 3300026075 Bacteria 4731
207 Ga0207702_10314868 3300026078 Bacteria 1489
208 Ga0207641_10281851 3300026088 Bacteria 1563
209 Ga0207641_10436738 3300026088 Bacteria 1263
210 Ga0207648_10005311 3300026089 Bacteria 12992
211 Ga0207676_10019318 3300026095 Bacteria 4969
212 Ga0207676_10149480 3300026095 Bacteria 2010
213 Ga0207674_10050375 3300026116 Bacteria 4254
214 Ga0207674_10609945 3300026116 Bacteria 1054
215 Ga0207675_100001131 3300026118 Bacteria 26465
216 Ga0207675_100040389 3300026118 Bacteria 4357
217 Ga0207683_10052304 3300026121 Bacteria 3578
218 Ga0207683_10120754 3300026121 Bacteria 2352
219 Ga0207683_10146565 3300026121 Bacteria 2129
220 Ga0207698_10010748 3300026142 Bacteria 5905
221 Ga0207698_10016930 3300026142 Bacteria 4930
222 Ga0207698_10079905 3300026142 Bacteria 2632
223 Ga0209974_10036844 3300027876 Bacteria 1624
224 Ga0268266_10008205 3300028379 Bacteria 9309
225 Ga0268266_10322606 3300028379 Bacteria 1446
226 Ga0268266_10357795 3300028379 Bacteria 1373
227 Ga0268265_10065470 3300028380 Bacteria 2805
228 Ga0268264_10004410 3300028381 Bacteria 12007
229 Ga0307517_10001182 3300028786 Bacteria 43986
230 Ga0307515_10061288 3300028794 Bacteria 5341
231 Ga0307515_10137798 3300028794 Bacteria 2639
232 Ga0307512_10077626 3300030522 Bacteria 2412
233 Ga0307512_10082021 3300030522 Bacteria 2310
234 Ga0307513_10045612 3300031456 Bacteria 4789
235 Ga0307513_10081369 3300031456 Bacteria 3337
236 Ga0307509_10000905 3300031507 Bacteria 50702
237 Ga0307509_10007193 3300031507 Bacteria 14652
238 Ga0307509_10141146 3300031507 Bacteria 2344
239 Ga0307509_10319032 3300031507 Bacteria 1291
240 Ga0307509_10371969 3300031507 Bacteria 1145
241 Ga0307408_100000425 3300031548 Bacteria 37508
242 Ga0307408_100063676 3300031548 Bacteria 2698
243 Ga0307508_10001047 3300031616 Bacteria 32004
244 Ga0307508_10030847 3300031616 Bacteria 4844
245 Ga0307508_10040637 3300031616 Bacteria 4175
246 Ga0307514_10051000 3300031649 Bacteria 3208
247 Ga0307516_10078711 3300031730 Bacteria 3142
248 Ga0307405_10023769 3300031731 Bacteria 3489
249 Ga0307405_10040296 3300031731 Bacteria 2828
250 Ga0307406_10000849 3300031901 Bacteria 17191
251 Ga0307406_10016209 3300031901 Bacteria 4326
252 Ga0307409_100037258 3300031995 Bacteria 3584
253 Ga0307416_100002702 3300032002 Bacteria 10275
254 Ga0307507_10165551 3300033179 Bacteria 1621
255 Ga0307507_10217836 3300033179 Bacteria 1289
256 Ga0373932_0051836 3300035112 Bacteria 1220
257 Ga0373931_0003625 3300035691 Bacteria 6975
258 Ga0373931_0007675 3300035691 Bacteria 5091
259 Ga0373947_0231657 3300035725 Bacteria 1217
260 Ga0395905_0000025 3300037471 Bacteria 317571
261 Ga0395905_0000600 3300037471 Bacteria 48145
262 Ga0395905_0001689 3300037471 Bacteria 26025
263 Ga0395905_0004017 3300037471 Bacteria 15440
264 Ga0436361_0528227 3300039447 Bacteria 9299
265 Ga0439436_0003562 3300041404 Bacteria 4734
266 Ga0439439_0011972 3300041406 Bacteria 2092
267 Ga0439447_026632 3300041407 Bacteria 1481
268 Ga0439431_0030586 3300041997 Bacteria 1334
269 Ga0439433_0010805 3300041999 Bacteria 1996
270 Ga0439432_009049 3300042006 Bacteria 3480
271 Ga0439449_0004695 3300042007 Bacteria 5274
272 Ga0439452_019459 3300042010 Bacteria 1794
273 Ga0439462_0051962 3300042015 Bacteria 1102
274 Ga0450895_008037 3300042132 Bacteria 879
275 Ga0450899_004692 3300042135 Bacteria 1464
276 Ga0450906_004323 3300042145 Bacteria 2981
277 Ga0439446_0012305 3300042156 Bacteria 2336
278 Ga0450908_007914 3300042184 Bacteria 1994
279 Ga0439434_0021022 3300042435 Bacteria 1960
280 Ga0450893_0001932 3300042532 Bacteria 3220
281 Ga0451577_0000142 3300042876 Bacteria 160598
282 Ga0451577_0001601 3300042876 Bacteria 29482
283 Ga0453684_0000126 3300044712 Bacteria 336395
284 Ga0466968_0018131 3300044735 Bacteria 2821
285 Ga0451576_0012713 3300045051 Bacteria 9450
286 Ga0495638_0046657 3300046460 Bacteria 2721
287 Ga0495610_0070904 3300046512 Bacteria 1626
288 Ga0495647_0032829 3300046681 Bacteria 1937
289 Ga0495658_0060232 3300046683 Bacteria 2177
290 Ga0495658_0294800 3300046683 Bacteria 1025
291 Ga0495624_0070707 3300046690 Bacteria 2172
292 Ga0495671_0080195 3300046692 Bacteria 1599
293 Ga0495686_0002068 3300047472 Bacteria 19737
294 Ga0495593_0015123 3300047673 Bacteria 4382
295 Ga0495602_0156059 3300048088 Bacteria 1787
296 Ga0496108_0266185 3300048911 Bacteria 1492
297 Ga0496109_0088631 3300048912 Bacteria 2860
298 Ga0496110_0190474 3300048913 Bacteria 1863
299 Ga0496115_0039619 3300048918 Bacteria 3743
300 Ga0501266_001056 3300049763 Bacteria 3553
301 nmdc:mga0yw44_113411_c1 3300050492 Bacteria 1739
302 nmdc:mga07m45_248305_c1 3300050496 Bacteria 1035
303 nmdc:mga09592_2081_c1 3300050508 Bacteria 16146
304 nmdc:mga0qj67_35399_c1 3300050509 Bacteria 3903
305 nmdc:mga08y16_566217_c1 3300050511 Bacteria 1148
306 nmdc:mga0rr50_174809_c1 3300050513 Bacteria 1752
307 Ga0500647_0064899 3300053091 Bacteria 1756
308 Ga0500594_0007773 3300053118 Bacteria 2431
309 Ga0500559_0000200 3300053136 Bacteria 47807
310 Ga0500619_000061 3300053154 Bacteria 33071
311 Ga0500622_0007576 3300053156 Bacteria 6148
312 Ga0500587_000118 3300053739 Bacteria 7301
313 2643867898 2643221570 Bacteria 5103772
314 2643991763 2643221596 Bacteria 5006805
315 2644059002 2643221609 Bacteria 6756331
316 2644071229 2643221611 Bacteria 6820941
317 2644293507 2643221652 Bacteria 5140275
318 2739246258 2738543012 Bacteria 7115078
319 2816471360 2816332133 Bacteria 7249298
320 2842718950 2842718218 Bacteria 4560148
321 2974320189 2974320154 Bacteria 4571377
322 2990713735 2990710928 Bacteria 5002431
323 Ga0070659_100317407
324 rootL2_10147774
325 Ga0055534_1002254
326 Ga0055540_1015537
327 Ga0065165_1037071
328 Ga0070676_10339147
329 Ga0070670_100065548
330 Ga0070670_100082119
331 Ga0070670_100138018
332 Ga0068869_100000464
333 Ga0068869_100017548
334 Ga0068869_100037537
335 Ga0070682_100267140
336 Ga0068868_100001157
337 Ga0068868_100079715
338 Ga0070660_100016308
339 Ga0070661_100117504
340 Ga0070668_100098060
341 Ga0070669_100080290
342 Ga0070669_100144358
343 Ga0070675_100001801
344 Ga0070675_100029917
345 Ga0070675_100067899
346 Ga0070671_100134436
347 Ga0070674_100055957
348 Ga0070674_100139506
349 Ga0070674_100354599
350 Ga0070673_100192968
351 Ga0070659_100017714
352 Ga0070659_100259023
353 Ga0070667_100006750
354 Ga0070667_100125570
355 Ga0070667_100163863
356 Ga0070667_100379356
357 Ga0070701_10055221
358 Ga0070701_10146469
359 Ga0070700_100031853
360 Ga0070678_100005974
361 Ga0070678_100091161
362 Ga0070678_100151673
363 Ga0070678_100157612
364 Ga0070662_100037375
365 Ga0070662_100062749
366 Ga0068867_100095358
367 Ga0068867_100260137
368 Ga0070679_100578075
369 Ga0070684_100403535
370 Ga0068853_100023336
371 Ga0068853_100443940
372 Ga0070672_100000535
373 Ga0070672_100015927
374 Ga0070672_100039549
375 Ga0070693_100019340
376 Ga0070693_100057815
377 Ga0070665_100014357
378 Ga0070665_100308423
379 Ga0070665_100336659
380 Ga0068855_100058339
381 Ga0068855_100233241
382 Ga0070664_100175841
383 Ga0068854_100017820
384 Ga0068854_100022161
385 Ga0068854_100103059
386 Ga0068854_100281924
387 Ga0068852_100007474
388 Ga0068852_100041639
389 Ga0068852_100074837
390 Ga0068852_100089127
391 Ga0068852_100375527
392 Ga0068859_100035116
393 Ga0068859_100041634
394 Ga0068859_100148619
395 Ga0068864_100011769
396 Ga0068864_100026320
397 Ga0068864_100043505
398 Ga0068864_100477137
399 Ga0068861_100015935
400 Ga0068870_10049885
401 Ga0068863_100035145
402 Ga0068863_100051014
403 Ga0068863_100086629
404 Ga0068858_100032986
405 Ga0068858_100070383
406 Ga0068858_100074050
407 Ga0068860_100003734
408 Ga0068860_100033660
409 Ga0068860_100043992
410 Ga0068860_100048642
411 Ga0068860_100198013
412 Ga0068862_100136011
413 Ga0075365_10030760
414 Ga0097621_100011335
415 Ga0097621_100063536
416 Ga0068871_100056273
417 Ga0075430_100080994
418 Ga0075429_100002266
419 Ga0097620_100035114
420 Ga0097620_100041634
421 Ga0097620_100148615
422 Ga0075435_100194264
423 Ga0111539_10467829
424 Ga0105245_10059383
425 Ga0105245_10136178
426 Ga0105245_10150926
427 Ga0105247_10226395
428 Ga0105243_10050782
429 Ga0105242_10014235
430 Ga0105248_10169420
431 Ga0105248_10351946
432 Ga0105237_10297582
433 Ga0105249_10101261
434 Ga0157370_10082179
435 Ga0157370_10164694
436 Ga0157369_10256524
437 Ga0157374_10035458
438 Ga0157378_10375695
439 Ga0163162_10086356
440 Ga0163162_10551689
441 Ga0157372_10196619
442 Ga0157375_10024111
443 Ga0157375_10058566
444 Ga0157375_10124117
445 Ga0163163_10296382
446 Ga0157380_10004961
447 Ga0157380_10010895
448 Ga0157377_10002890
449 Ga0157379_10010802
450 Ga0157379_10027535
451 Ga0157379_10131919
452 Ga0157379_10338327
453 Ga0157376_10009598
454 Ga0163161_10064135
455 Ga0213872_10072328
456 Ga0209673_1024950
457 Ga0209130_1008939
458 Ga0209675_1009540
459 Ga0209676_1006734
460 Ga0209564_1020868
461 Ga0209051_1004969
462 Ga0209257_1006635
463 Ga0207656_10122047
464 Ga0207682_10002043
465 Ga0207682_10009265
466 Ga0207682_10017228
467 Ga0207642_10002232
468 Ga0207680_10196438
469 Ga0207680_10241609
470 Ga0207645_10012965
471 Ga0207645_10316257
472 Ga0207643_10059293
473 Ga0207705_10143090
474 Ga0207671_10201548
475 Ga0207662_10037655
476 Ga0207657_10029332
477 Ga0207649_10039172
478 Ga0207649_10074357
479 Ga0207649_10339013
480 Ga0207681_10000205
481 Ga0207681_10128322
482 Ga0207650_10021208
483 Ga0207650_10077284
484 Ga0207650_10082923
485 Ga0207650_10156835
486 Ga0207650_10181005
487 Ga0207659_10003663
488 Ga0207659_10096382
489 Ga0207659_10499962
490 Ga0207687_10025354
491 Ga0207687_10033447
492 Ga0207644_10118081
493 Ga0207690_10038263
494 Ga0207706_10000933
495 Ga0207706_10088000
496 Ga0207669_10007121
497 Ga0207669_10112651
498 Ga0207669_10386549
499 Ga0207704_10001897
500 Ga0207704_10102945
501 Ga0207691_10008779
502 Ga0207691_10038127
503 Ga0207691_10112282
504 Ga0207691_10279848
505 Ga0207691_10293613
506 Ga0207711_10159634
507 Ga0207711_10369572
508 Ga0207689_10000150
509 Ga0207689_10012442
510 Ga0207661_10064955
511 Ga0207679_10090496
512 Ga0207667_10210789
513 Ga0207651_10018265
514 Ga0207712_10052734
515 Ga0207668_10028131
516 Ga0207668_10090836
517 Ga0207640_10258425
518 Ga0207640_10430787
519 Ga0207658_10019536
520 Ga0207658_10024557
521 Ga0207658_10049129
522 Ga0207677_10009321
523 Ga0207677_10020290
524 Ga0207677_10207104
525 Ga0207703_10030511
526 Ga0207678_10065894
527 Ga0207678_10187373
528 Ga0207708_10022773
529 Ga0207702_10314868
530 Ga0207641_10281851
531 Ga0207641_10436738
532 Ga0207648_10005311
533 Ga0207676_10019318
534 Ga0207676_10149480
535 Ga0207674_10050375
536 Ga0207674_10609945
537 Ga0207675_100001131
538 Ga0207675_100040389
539 Ga0207683_10052304
540 Ga0207683_10120754
541 Ga0207683_10146565
542 Ga0207698_10010748
543 Ga0207698_10016930
544 Ga0207698_10079905
545 Ga0209974_10036844
546 Ga0268266_10008205
547 Ga0268266_10322606
548 Ga0268266_10357795
549 Ga0268265_10065470
550 Ga0268264_10004410
551 Ga0307517_10001182
552 Ga0307515_10061288
553 Ga0307515_10137798
554 Ga0307512_10077626
555 Ga0307512_10082021
556 Ga0307513_10045612
557 Ga0307513_10081369
558 Ga0307509_10000905
559 Ga0307509_10007193
560 Ga0307509_10141146
561 Ga0307509_10319032
562 Ga0307509_10371969
563 Ga0307408_100000425
564 Ga0307408_100063676
565 Ga0307508_10001047
566 Ga0307508_10030847
567 Ga0307508_10040637
568 Ga0307514_10051000
569 Ga0307516_10078711
570 Ga0307405_10023769
571 Ga0307405_10040296
572 Ga0307406_10000849
573 Ga0307406_10016209
574 Ga0307409_100037258
575 Ga0307416_100002702
576 Ga0307507_10165551
577 Ga0307507_10217836
578 Ga0373932_0051836
579 Ga0373931_0003625
580 Ga0373931_0007675
581 Ga0373947_0231657
582 Ga0395905_0000025
583 Ga0395905_0000600
584 Ga0395905_0001689
585 Ga0395905_0004017
586 Ga0436361_0528227
587 Ga0439436_0003562
588 Ga0439439_0011972
589 Ga0439447_026632
590 Ga0439431_0030586
591 Ga0439433_0010805
592 Ga0439432_009049
593 Ga0439449_0004695
594 Ga0439452_019459
595 Ga0439462_0051962
596 Ga0450895_008037
597 Ga0450899_004692
598 Ga0450906_004323
599 Ga0439446_0012305
600 Ga0450908_007914
601 Ga0439434_0021022
602 Ga0450893_0001932
603 Ga0451577_0000142
604 Ga0451577_0001601
605 Ga0453684_0000126
606 Ga0466968_0018131
607 Ga0451576_0012713
608 Ga0495638_0046657
609 Ga0495610_0070904
610 Ga0495647_0032829
611 Ga0495658_0060232
612 Ga0495658_0294800
613 Ga0495624_0070707
614 Ga0495671_0080195
615 Ga0495686_0002068
616 Ga0495593_0015123
617 Ga0495602_0156059
618 Ga0496108_0266185
619 Ga0496109_0088631
620 Ga0496110_0190474
621 Ga0496115_0039619
622 Ga0501266_001056
623 nmdc:mga0yw44_113411_c1
624 nmdc:mga07m45_248305_c1
625 nmdc:mga09592_2081_c1
626 nmdc:mga0qj67_35399_c1
627 nmdc:mga08y16_566217_c1
628 nmdc:mga0rr50_174809_c1
629 Ga0500647_0064899
630 Ga0500594_0007773
631 Ga0500559_0000200
632 Ga0500619_000061
633 Ga0500622_0007576
634 Ga0500587_000118
635 2643867898
636 2643991763
637 2644059002
638 2644071229
639 2644293507
640 2739246258
641 2816471360
642 2842718950
643 2974320189
644 2990713735

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01774

UreD

UreD urease accessory protein

82

284

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
8hcn-assembly1.cif.gz_D cryoem structure of klebsiella pneumoniae ured/urease complex 0.9157 1 278
8hcn-assembly1.cif.gz_D cryoem structure of klebsiella pneumoniae ured/urease complex 0.9124 1 278
4hi0-assembly1.cif.gz_D crystal structure of helicobacter pylori urease accessory protein uref/h/g complex 0.8906 3 258
4hi0-assembly1.cif.gz_D crystal structure of helicobacter pylori urease accessory protein uref/h/g complex 0.8676 3 258
8hc1-assembly1.cif.gz_W cryoem structure of helicobacter pylori urefd/urease complex 0.8469 1 268
ID Description Score Start End Superfamily
af_Q8IBH7_188_329_3.30.70.1130 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;EIF_2_alpha 0.8026 206 269 3.30.70.1130
af_I1MZ01_202_324_3.30.70.1130 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;EIF_2_alpha 0.7899 206 267 3.30.70.1130
af_Q21019_18_104_3.30.310.50 Alpha Beta;2-Layer Sandwich;TATA-Binding Protein;Alpha-D-phosphohexomutase, C-terminal domain 0.7842 192 267 3.30.310.50
af_Q4E620_304_418_3.30.70.1130 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;EIF_2_alpha 0.7722 206 267 3.30.70.1130
5suhB01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;BMC (bacterial microcompartment) domain 0.7336 191 260 3.30.70.1710
ID Description Score Start End GO Terms
AF-V4YN75-F1-model_v4 Urease accessory protein UreD 0.9813 2 278 GO:0005737
GO:0016151
AF-A0A554X3T7-F1-model_v4 Urease accessory protein UreD 0.9808 1 278 GO:0005737
GO:0016151
AF-A0A7Y4JNP9-F1-model_v4 deleted 0.9778 74 188
AF-V4YN75-F1-model_v4 Urease accessory protein UreD 0.9744 2 278 GO:0005737
GO:0016151
AF-A0A536Z941-F1-model_v4 Urease accessory protein UreD 0.9703 2 162 GO:0016151

Map