F403312

General Info

Members Datasets Scaffolds Average Seq Length
315 201 630 458

Family's Representative Sequence

Representative Sequence 3300046460|Ga0495638_0003963|Ga0495638_0003963_8698_10224
Length 508
Sequence MSAFDTSPGSQREHLTARPDGLSSPRRDVRASAAIQAAAGPTSASPAVSGGRLLVVDDERSMRELLAIVLGREGFEVVVAENGQQALAELERRPVDLLISDIHMPDMTGLEVLRAARALNPDLAGIMVTAFASTETAIEALRMGAYDYIHKPFNVDELKIVVRGALERRQLRRENVLLKRALQETHQFSNIIGRSETMVAVFELIETIAQTTSTVLVTGESGTGKELAARAIHFNSLRRDRPFVAVNCGALTETLLESELFGHVKGSFTGASSNKKGLIEVAEKGTIFLDEIGEMSPLMQVKLLRVLQERTFRRVGGTEETPADIRIIAATNRELTQMVAEGRFREDLYYRINVIPVHLPALRERQEDIALLAHHFVERFARDMGKTVQGIANESLELLRRYHWPGNIRELENAMERAVALERSPVILPSSLPLAMRTAPGQPAADAPIPTSDDLPDSGFDLERHVREIERRFITEALKRTDGVKVKAAELLGMSFRSFRYYAKKYGL

Samples

Sample ID Description Type Environment
1 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
13 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
17 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
18 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
19 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
20 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
21 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
22 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
23 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
24 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
25 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
26 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
27 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
28 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
29 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
30 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
31 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
32 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
33 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
34 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
35 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
36 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
37 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
38 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
39 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
40 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
41 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
42 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
43 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
44 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
45 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
46 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
47 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
48 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
49 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
50 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
51 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
52 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
53 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
54 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
55 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
56 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
57 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
58 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
59 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
60 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
61 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
62 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
63 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
64 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
65 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
66 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
67 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
68 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
69 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
70 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
97 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
98 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
99 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
101 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
102 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
103 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
104 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
105 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
106 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
107 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
108 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
109 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
110 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
111 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
112 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
113 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
114 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
115 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
116 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
117 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
118 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
119 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
120 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
121 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
122 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
123 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
124 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
125 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
126 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
127 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
128 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
129 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
130 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
131 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
132 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
133 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
134 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
135 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
136 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
137 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
138 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
139 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
140 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
141 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
142 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
143 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
144 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
145 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
146 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
147 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
148 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
149 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
150 3300049515 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought Metagenome Rhizosphere
151 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
152 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
153 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
154 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
155 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
156 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
157 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
158 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
159 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
160 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
161 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
162 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
163 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
164 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
165 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
166 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
167 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
168 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
169 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
170 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
171 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
172 3300049678 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought Metagenome Rhizosphere
173 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
174 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
175 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
176 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
177 3300049771 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_B_4_control Metagenome Rhizosphere
178 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
179 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
180 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
181 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
182 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
183 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
184 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
185 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
186 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
187 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
188 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
189 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
190 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
191 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
192 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
193 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
194 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
195 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
196 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
197 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
198 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
199 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
200 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
201 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.03
Nodule 0.32
Rhizoplane 0.95
Rhizosphere 91.75
Stem 0
Stem Tuber 0
Unclassified 0.32

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495638_0003963 3300046460 Bacteria 11407
2 rootH2_10009753 3300003320 Bacteria 20796
3 Ga0065704_10011381 3300005289 Bacteria 2717
4 Ga0065712_10075293 3300005290 Bacteria 3892
5 Ga0065707_10019350 3300005295 Bacteria 2332
6 Ga0070683_100000203 3300005329 Bacteria 40069
7 Ga0070690_100002086 3300005330 Bacteria 10678
8 Ga0070670_100001747 3300005331 Bacteria 17692
9 Ga0068869_100019904 3300005334 Bacteria 4595
10 Ga0070666_10001907 3300005335 Bacteria 12670
11 Ga0070666_10019493 3300005335 Bacteria 4380
12 Ga0068868_100001135 3300005338 Bacteria 18180
13 Ga0070691_10005052 3300005341 Bacteria 5997
14 Ga0070692_10045267 3300005345 Bacteria 2269
15 Ga0070671_100006023 3300005355 Bacteria 9665
16 Ga0070673_100145627 3300005364 Bacteria 2002
17 Ga0070667_100000589 3300005367 Bacteria 35617
18 Ga0070714_100031882 3300005435 Bacteria 4399
19 Ga0070713_100073425 3300005436 Bacteria 2895
20 Ga0070701_10003987 3300005438 Bacteria 5911
21 Ga0070700_100060364 3300005441 Bacteria 2390
22 Ga0070708_100070660 3300005445 Bacteria 3141
23 Ga0070708_100122260 3300005445 Bacteria 2402
24 Ga0070706_100191684 3300005467 Bacteria 1910
25 Ga0070707_100000018 3300005468 Bacteria 137542
26 Ga0070707_100000822 3300005468 Bacteria 30756
27 Ga0070699_100009583 3300005518 Bacteria 8390
28 Ga0070699_100041875 3300005518 Bacteria 3963
29 Ga0070684_100077531 3300005535 Bacteria 2935
30 Ga0070697_100019103 3300005536 Bacteria 5410
31 Ga0070672_100001811 3300005543 Bacteria 13350
32 Ga0070695_100010620 3300005545 Bacteria 5503
33 Ga0070696_100018571 3300005546 Bacteria 4702
34 Ga0070696_100120541 3300005546 Bacteria 1898
35 Ga0070665_100074038 3300005548 Bacteria 3411
36 Ga0068855_100051167 3300005563 Bacteria 4866
37 Ga0070664_100013050 3300005564 Bacteria 6760
38 Ga0068857_100029571 3300005577 Bacteria 4835
39 Ga0068864_100013625 3300005618 Bacteria 6740
40 Ga0068864_100108715 3300005618 Unclassified 2468
41 Ga0068861_100090664 3300005719 Bacteria 2412
42 Ga0068863_100040655 3300005841 Bacteria 4421
43 Ga0068863_100060670 3300005841 Bacteria 3576
44 Ga0068860_100063343 3300005843 Bacteria 3512
45 Ga0068860_100162580 3300005843 Bacteria 2153
46 Ga0081455_10000993 3300005937 Bacteria 35989
47 Ga0081455_10069422 3300005937 Bacteria 2930
48 Ga0081538_10005054 3300005981 Bacteria 11994
49 Ga0070717_10000034 3300006028 Bacteria 127047
50 Ga0075368_10005399 3300006042 Bacteria 4392
51 Ga0075363_100022432 3300006048 Bacteria 3191
52 Ga0075367_10066092 3300006178 Bacteria 2166
53 Ga0075370_10055131 3300006353 Bacteria 2258
54 Ga0068871_100056698 3300006358 Bacteria 3186
55 Ga0075428_100003826 3300006844 Bacteria 16522
56 Ga0075428_100016961 3300006844 Bacteria 8044
57 Ga0075428_100097530 3300006844 Bacteria 3204
58 Ga0075428_100265418 3300006844 Bacteria 1848
59 Ga0075428_100328841 3300006844 Bacteria 1642
60 Ga0075430_100000473 3300006846 Bacteria 30094
61 Ga0075430_100017392 3300006846 Bacteria 6124
62 Ga0075430_100035539 3300006846 Bacteria 4227
63 Ga0075431_100005047 3300006847 Bacteria 12984
64 Ga0075431_100021143 3300006847 Bacteria 6649
65 Ga0075431_100034327 3300006847 Bacteria 5226
66 Ga0075431_100049013 3300006847 Bacteria 4357
67 Ga0075431_100183921 3300006847 Bacteria 2144
68 Ga0075433_10013490 3300006852 Bacteria 6644
69 Ga0075433_10030225 3300006852 Bacteria 4620
70 Ga0075433_10051040 3300006852 Bacteria 3601
71 Ga0075434_100017784 3300006871 Bacteria 6856
72 Ga0075434_100045638 3300006871 Bacteria 4347
73 Ga0075434_100145806 3300006871 Bacteria 2388
74 Ga0075429_100000042 3300006880 Bacteria 57742
75 Ga0075429_100015368 3300006880 Bacteria 6634
76 Ga0097620_100104205 3300006931 Bacteria 2896
77 Ga0079104_1006619 3300006946 Bacteria 4346
78 Ga0075435_100173140 3300007076 Bacteria 1822
79 Ga0111539_10003752 3300009094 Bacteria 20000
80 Ga0111539_10005408 3300009094 Bacteria 16528
81 Ga0111539_10166718 3300009094 Bacteria 2575
82 Ga0105245_10212200 3300009098 Bacteria 1864
83 Ga0114129_10000665 3300009147 Bacteria 43114
84 Ga0114129_10002159 3300009147 Bacteria 27115
85 Ga0114129_10008514 3300009147 Bacteria 14619
86 Ga0114129_10026176 3300009147 Bacteria 8259
87 Ga0114129_10221486 3300009147 Bacteria 2552
88 Ga0114129_10348261 3300009147 Bacteria 1963
89 Ga0105243_10023541 3300009148 Bacteria 4692
90 Ga0105241_10021827 3300009174 Bacteria 4738
91 Ga0105242_10013695 3300009176 Bacteria 6275
92 Ga0105242_10035635 3300009176 Bacteria 3990
93 Ga0105248_10007004 3300009177 Bacteria 12347
94 Ga0105238_10001021 3300009551 Bacteria 28484
95 Ga0157374_10140607 3300013296 Bacteria 2343
96 Ga0163162_10034126 3300013306 Bacteria 5061
97 Ga0157375_10001225 3300013308 Bacteria 22150
98 Ga0163163_10000018 3300014325 Bacteria 199503
99 Ga0163163_10000065 3300014325 Bacteria 115460
100 Ga0163163_10003944 3300014325 Bacteria 12662
101 Ga0163163_10019649 3300014325 Bacteria 6347
102 Ga0163163_10041576 3300014325 Bacteria 4496
103 Ga0157380_10041496 3300014326 Bacteria 3591
104 Ga0157379_10011672 3300014968 Bacteria 7671
105 Ga0157376_10141640 3300014969 Bacteria 2158
106 Ga0207680_10009171 3300025903 Bacteria 4891
107 Ga0207643_10080843 3300025908 Bacteria 1883
108 Ga0207684_10093445 3300025910 Bacteria 2565
109 Ga0207654_10054839 3300025911 Bacteria 2305
110 Ga0207649_10015101 3300025920 Bacteria 4336
111 Ga0207646_10000072 3300025922 Bacteria 141756
112 Ga0207646_10026036 3300025922 Bacteria 5346
113 Ga0207694_10000442 3300025924 Bacteria 38492
114 Ga0207650_10000920 3300025925 Bacteria 22193
115 Ga0207659_10068303 3300025926 Bacteria 2584
116 Ga0207700_10038953 3300025928 Bacteria 3455
117 Ga0207664_10102127 3300025929 Bacteria 2371
118 Ga0207644_10022978 3300025931 Bacteria 4265
119 Ga0207709_10092061 3300025935 Bacteria 1984
120 Ga0207670_10016777 3300025936 Bacteria 4412
121 Ga0207691_10003489 3300025940 Bacteria 15304
122 Ga0207711_10005260 3300025941 Bacteria 10971
123 Ga0207689_10035537 3300025942 Bacteria 4139
124 Ga0207651_10116824 3300025960 Bacteria 2014
125 Ga0207712_10048906 3300025961 Bacteria 2944
126 Ga0207658_10006062 3300025986 Bacteria 8257
127 Ga0207677_10001536 3300026023 Bacteria 12212
128 Ga0207677_10113401 3300026023 Bacteria 2023
129 Ga0207703_10058769 3300026035 Bacteria 3139
130 Ga0207708_10037477 3300026075 Bacteria 3694
131 Ga0207708_10076865 3300026075 Bacteria 2562
132 Ga0207708_10085375 3300026075 Bacteria 2428
133 Ga0207641_10010699 3300026088 Bacteria 7525
134 Ga0207641_10063241 3300026088 Bacteria 3161
135 Ga0207648_10173524 3300026089 Bacteria 1906
136 Ga0207676_10092723 3300026095 Bacteria 2485
137 Ga0209983_1006780 3300027665 Bacteria 2350
138 Ga0209974_10005400 3300027876 Bacteria 4497
139 Ga0207428_10006074 3300027907 Bacteria 11170
140 Ga0207428_10082578 3300027907 Bacteria 2507
141 Ga0268265_10158446 3300028380 Bacteria 1919
142 Ga0265327_10072046 3300031251 Bacteria 1727
143 Ga0307408_100065552 3300031548 Bacteria 2664
144 Ga0316578_10078941 3300031728 Bacteria 1956
145 Ga0307413_10018305 3300031824 Bacteria 3672
146 Ga0307410_10032030 3300031852 Bacteria 3379
147 Ga0307407_10127287 3300031903 Bacteria 1624
148 Ga0307412_10030986 3300031911 Bacteria 3373
149 Ga0307409_100041635 3300031995 Bacteria 3432
150 Ga0307409_100077455 3300031995 Bacteria 2671
151 Ga0307416_100003483 3300032002 Bacteria 9250
152 Ga0307416_100008612 3300032002 Bacteria 6600
153 Ga0307414_10013238 3300032004 Bacteria 4906
154 Ga0316580_10010502 3300032139 Bacteria 2801
155 Ga0373957_0050419 3300035120 Bacteria 1591
156 Ga0373943_0010563 3300035170 Bacteria 4140
157 Ga0373946_0007047 3300035171 Bacteria 4101
158 Ga0373946_0042162 3300035171 Bacteria 1875
159 Ga0373927_0016184 3300035695 Bacteria 4922
160 Ga0373947_0027845 3300035725 Bacteria 3310
161 Ga0373937_0039182 3300036401 Bacteria 4319
162 Ga0316584_0003104 3300036712 Bacteria 10721
163 Ga0316584_0053257 3300036712 Bacteria 3028
164 Ga0373925_0004326 3300037068 Bacteria 10751
165 Ga0395900_0182771 3300037418 Bacteria 2130
166 Ga0400483_106608 3300039062 Bacteria 23675
167 Ga0400489_57544 3300039093 Bacteria 4723
168 Ga0439433_0008152 3300041999 Bacteria 2269
169 Ga0439462_0010201 3300042015 Bacteria 2379
170 Ga0439446_0021190 3300042156 Bacteria 1836
171 Ga0451577_0010737 3300042876 Bacteria 8717
172 Ga0453683_0102200 3300044673 Bacteria 1800
173 Ga0453684_0041823 3300044712 Bacteria 6188
174 Ga0451576_0024509 3300045051 Bacteria 6517
175 Ga0451576_0151578 3300045051 Bacteria 2418
176 Ga0495592_0004596 3300046454 Bacteria 10108
177 Ga0495629_0000007 3300046459 Bacteria 358693
178 Ga0495638_0038463 3300046460 Bacteria 3040
179 Ga0495639_0000012 3300046475 Bacteria 83750
180 Ga0495662_0028005 3300046476 Bacteria 2721
181 Ga0495662_0072753 3300046476 Bacteria 1667
182 Ga0495630_0151925 3300046517 Bacteria 1762
183 Ga0495666_0000100 3300046526 Bacteria 35047
184 Ga0495586_0001235 3300046535 Bacteria 14337
185 Ga0495667_0000141 3300046559 Bacteria 49205
186 Ga0495635_0009595 3300046663 Bacteria 6765
187 Ga0495657_0001132 3300046675 Bacteria 23316
188 Ga0495657_0004047 3300046675 Bacteria 11759
189 Ga0495599_0044516 3300046678 Bacteria 2784
190 Ga0495599_0159399 3300046678 Bacteria 1395
191 Ga0495658_0011676 3300046683 Bacteria 4425
192 Ga0495600_0134811 3300046809 Bacteria 1604
193 Ga0495581_0005941 3300047315 Bacteria 7077
194 Ga0495674_0003833 3300047319 Bacteria 14606
195 Ga0495674_0204147 3300047319 Bacteria 1639
196 Ga0495676_0013997 3300047321 Bacteria 7185
197 Ga0495680_0004930 3300047322 Bacteria 12635
198 Ga0495680_0061234 3300047322 Bacteria 2896
199 Ga0495684_0008370 3300047471 Bacteria 8013
200 Ga0495684_0051387 3300047471 Bacteria 3146
201 Ga0495684_0130943 3300047471 Bacteria 1884
202 Ga0496102_0002017 3300048905 Bacteria 17536
203 Ga0496103_0023711 3300048906 Bacteria 3701
204 Ga0496104_0005476 3300048907 Bacteria 11118
205 Ga0501292_008725 3300049515 Bacteria 1490
206 Ga0501031_0003077 3300049568 Bacteria 10665
207 Ga0501032_0025949 3300049569 Bacteria 4036
208 Ga0501033_0112521 3300049570 Bacteria 1980
209 Ga0501034_0037185 3300049571 Bacteria 4929
210 Ga0501036_0013102 3300049572 Bacteria 6890
211 Ga0501036_0041374 3300049572 Bacteria 3899
212 Ga0501037_0030808 3300049573 Bacteria 3962
213 Ga0501037_0068228 3300049573 Bacteria 2589
214 Ga0501037_0117884 3300049573 Bacteria 1910
215 Ga0501038_0001232 3300049574 Bacteria 23214
216 Ga0501038_0018464 3300049574 Bacteria 6296
217 Ga0501038_0024420 3300049574 Bacteria 5394
218 Ga0501039_0010324 3300049575 Bacteria 7123
219 Ga0501040_0001050 3300049576 Bacteria 17487
220 Ga0501041_0000047 3300049577 Bacteria 42489
221 Ga0501041_0008761 3300049577 Bacteria 5952
222 Ga0501041_0049563 3300049577 Bacteria 2558
223 Ga0501042_0000208 3300049578 Bacteria 27850
224 Ga0501042_0089259 3300049578 Bacteria 2212
225 Ga0501043_0017792 3300049579 Bacteria 5572
226 Ga0501043_0037881 3300049579 Bacteria 3793
227 Ga0501046_0003563 3300049580 Bacteria 14270
228 Ga0501046_0004636 3300049580 Bacteria 12416
229 Ga0501046_0006402 3300049580 Bacteria 10439
230 Ga0501048_0015438 3300049582 Bacteria 5641
231 Ga0501048_0153743 3300049582 Bacteria 1627
232 Ga0501068_0020898 3300049584 Bacteria 3820
233 Ga0501068_0054295 3300049584 Bacteria 2427
234 Ga0501071_0001120 3300049587 Bacteria 14939
235 Ga0501071_0038316 3300049587 Bacteria 3425
236 Ga0501072_0000581 3300049588 Bacteria 26400
237 Ga0501072_0093046 3300049588 Bacteria 2395
238 Ga0501073_0000524 3300049589 Bacteria 26883
239 Ga0501075_0000702 3300049591 Bacteria 20732
240 Ga0501075_0001434 3300049591 Bacteria 15504
241 Ga0501076_0000105 3300049592 Bacteria 46098
242 Ga0501076_0014810 3300049592 Bacteria 5882
243 Ga0501076_0032126 3300049592 Bacteria 4096
244 Ga0501077_0000775 3300049593 Bacteria 19287
245 Ga0501077_0003353 3300049593 Bacteria 9627
246 Ga0501248_000086 3300049678 Bacteria 4100
247 Ga0501079_0003650 3300049741 Bacteria 11339
248 Ga0501079_0015048 3300049741 Bacteria 5898
249 Ga0501079_0021084 3300049741 Bacteria 4982
250 Ga0501080_0012212 3300049742 Bacteria 7870
251 Ga0501080_0033613 3300049742 Bacteria 4787
252 Ga0501081_0000125 3300049743 Bacteria 33558
253 Ga0501081_0000734 3300049743 Bacteria 19101
254 Ga0501081_0004209 3300049743 Bacteria 9225
255 Ga0501083_0034116 3300049744 Bacteria 3481
256 Ga0501274_000199 3300049771 Bacteria 3816
257 Ga0501035_0054192 3300049822 Bacteria 3584
258 Ga0501035_0181486 3300049822 Bacteria 1813
259 Ga0501045_0001282 3300049824 Bacteria 16686
260 Ga0501045_0014028 3300049824 Bacteria 5671
261 nmdc:mga03n38_7463_c1 3300050490 Bacteria 3871
262 nmdc:mga0yw44_115734_c1 3300050492 Bacteria 1722
263 nmdc:mga0k408_21422_c1 3300050493 Bacteria 3630
264 nmdc:mga0k408_24325_c1 3300050493 Bacteria 3423
265 nmdc:mga0k408_79171_c1 3300050493 Bacteria 1923
266 nmdc:mga06z11_18162_c1 3300050494 Bacteria 3208
267 nmdc:mga06z11_51708_c1 3300050494 Bacteria 2105
268 nmdc:mga06z11_8192_c1 3300050494 Bacteria 4341
269 nmdc:mga07m45_1371_c1 3300050496 Bacteria 11100
270 nmdc:mga05p37_104646_c1 3300050507 Bacteria 3482
271 nmdc:mga05p37_11509_c1 3300050507 Bacteria 10538
272 nmdc:mga05p37_1619_c1 3300050507 Bacteria 26082
273 nmdc:mga05p37_1789_c1 3300050507 Bacteria 25102
274 nmdc:mga05p37_242262_c1 3300050507 Bacteria 2167
275 nmdc:mga05p37_25688_c1 3300050507 Bacteria 7164
276 nmdc:mga05p37_45703_c1 3300050507 Bacteria 5384
277 nmdc:mga05p37_5179_c1 3300050507 Bacteria 15296
278 nmdc:mga05p37_54152_c1 3300050507 Bacteria 4935
279 nmdc:mga05p37_60893_c1 3300050507 Bacteria 4647
280 nmdc:mga05p37_62117_c1 3300050507 Bacteria 4598
281 nmdc:mga05p37_69032_c1 3300050507 Bacteria 4347
282 nmdc:mga09592_14312_c1 3300050508 Bacteria 6476
283 nmdc:mga09592_1870_c1 3300050508 Bacteria 16951
284 nmdc:mga0qj67_4360_c1 3300050509 Bacteria 10247
285 nmdc:mga0qj67_586_c1 3300050509 Bacteria 24826
286 nmdc:mga06r32_123725_c1 3300050510 Bacteria 2553
287 nmdc:mga06r32_171423_c1 3300050510 Bacteria 2154
288 nmdc:mga06r32_1731_c1 3300050510 Bacteria 19650
289 nmdc:mga06r32_19330_c1 3300050510 Bacteria 6251
290 nmdc:mga06r32_4505_c1 3300050510 Bacteria 12478
291 nmdc:mga06r32_7145_c1 3300050510 Bacteria 10062
292 nmdc:mga08y16_27791_c1 3300050511 Bacteria 5962
293 nmdc:mga08y16_4974_c1 3300050511 Bacteria 13894
294 nmdc:mga0n895_148423_c1 3300050512 Bacteria 2374
295 nmdc:mga0n895_38908_c1 3300050512 Bacteria 4610
296 nmdc:mga0rr50_33901_c1 3300050513 Bacteria 3651
297 nmdc:mga0a205_19340_c1 3300050515 Bacteria 6420
298 nmdc:mga0a205_20631_c1 3300050515 Bacteria 6223
299 nmdc:mga0a205_27946_c1 3300050515 Bacteria 5390
300 nmdc:mga0a205_8938_c1 3300050515 Bacteria 9132
301 Ga0495655_0000057 3300053083 Bacteria 23645
302 Ga0500566_0007324 3300053094 Bacteria 6536
303 Ga0500555_000008 3300053103 Bacteria 282333
304 Ga0500555_000371 3300053103 Bacteria 19033
305 Ga0500568_0009195 3300053139 Bacteria 4712
306 Ga0500616_0000173 3300053153 Bacteria 107646
307 Ga0500645_000077 3300053730 Bacteria 77326
308 Ga0501084_0000369 3300054114 Bacteria 34424
309 Ga0501084_0009766 3300054114 Bacteria 7935
310 Ga0501084_0035435 3300054114 Bacteria 4171
311 Ga0501082_0000274 3300060353 Bacteria 45495
312 Ga0501082_0002138 3300060353 Bacteria 17337
313 Ga0530510_0000571 3300061734 Bacteria 23734
314 Ga0530510_0001640 3300061734 Bacteria 15129
315 Ga0530510_0036765 3300061734 Bacteria 3529
316 Ga0495638_0003963
317 rootH2_10009753
318 Ga0065704_10011381
319 Ga0065712_10075293
320 Ga0065707_10019350
321 Ga0070683_100000203
322 Ga0070690_100002086
323 Ga0070670_100001747
324 Ga0068869_100019904
325 Ga0070666_10001907
326 Ga0070666_10019493
327 Ga0068868_100001135
328 Ga0070691_10005052
329 Ga0070692_10045267
330 Ga0070671_100006023
331 Ga0070673_100145627
332 Ga0070667_100000589
333 Ga0070714_100031882
334 Ga0070713_100073425
335 Ga0070701_10003987
336 Ga0070700_100060364
337 Ga0070708_100070660
338 Ga0070708_100122260
339 Ga0070706_100191684
340 Ga0070707_100000018
341 Ga0070707_100000822
342 Ga0070699_100009583
343 Ga0070699_100041875
344 Ga0070684_100077531
345 Ga0070697_100019103
346 Ga0070672_100001811
347 Ga0070695_100010620
348 Ga0070696_100018571
349 Ga0070696_100120541
350 Ga0070665_100074038
351 Ga0068855_100051167
352 Ga0070664_100013050
353 Ga0068857_100029571
354 Ga0068864_100013625
355 Ga0068864_100108715
356 Ga0068861_100090664
357 Ga0068863_100040655
358 Ga0068863_100060670
359 Ga0068860_100063343
360 Ga0068860_100162580
361 Ga0081455_10000993
362 Ga0081455_10069422
363 Ga0081538_10005054
364 Ga0070717_10000034
365 Ga0075368_10005399
366 Ga0075363_100022432
367 Ga0075367_10066092
368 Ga0075370_10055131
369 Ga0068871_100056698
370 Ga0075428_100003826
371 Ga0075428_100016961
372 Ga0075428_100097530
373 Ga0075428_100265418
374 Ga0075428_100328841
375 Ga0075430_100000473
376 Ga0075430_100017392
377 Ga0075430_100035539
378 Ga0075431_100005047
379 Ga0075431_100021143
380 Ga0075431_100034327
381 Ga0075431_100049013
382 Ga0075431_100183921
383 Ga0075433_10013490
384 Ga0075433_10030225
385 Ga0075433_10051040
386 Ga0075434_100017784
387 Ga0075434_100045638
388 Ga0075434_100145806
389 Ga0075429_100000042
390 Ga0075429_100015368
391 Ga0097620_100104205
392 Ga0079104_1006619
393 Ga0075435_100173140
394 Ga0111539_10003752
395 Ga0111539_10005408
396 Ga0111539_10166718
397 Ga0105245_10212200
398 Ga0114129_10000665
399 Ga0114129_10002159
400 Ga0114129_10008514
401 Ga0114129_10026176
402 Ga0114129_10221486
403 Ga0114129_10348261
404 Ga0105243_10023541
405 Ga0105241_10021827
406 Ga0105242_10013695
407 Ga0105242_10035635
408 Ga0105248_10007004
409 Ga0105238_10001021
410 Ga0157374_10140607
411 Ga0163162_10034126
412 Ga0157375_10001225
413 Ga0163163_10000018
414 Ga0163163_10000065
415 Ga0163163_10003944
416 Ga0163163_10019649
417 Ga0163163_10041576
418 Ga0157380_10041496
419 Ga0157379_10011672
420 Ga0157376_10141640
421 Ga0207680_10009171
422 Ga0207643_10080843
423 Ga0207684_10093445
424 Ga0207654_10054839
425 Ga0207649_10015101
426 Ga0207646_10000072
427 Ga0207646_10026036
428 Ga0207694_10000442
429 Ga0207650_10000920
430 Ga0207659_10068303
431 Ga0207700_10038953
432 Ga0207664_10102127
433 Ga0207644_10022978
434 Ga0207709_10092061
435 Ga0207670_10016777
436 Ga0207691_10003489
437 Ga0207711_10005260
438 Ga0207689_10035537
439 Ga0207651_10116824
440 Ga0207712_10048906
441 Ga0207658_10006062
442 Ga0207677_10001536
443 Ga0207677_10113401
444 Ga0207703_10058769
445 Ga0207708_10037477
446 Ga0207708_10076865
447 Ga0207708_10085375
448 Ga0207641_10010699
449 Ga0207641_10063241
450 Ga0207648_10173524
451 Ga0207676_10092723
452 Ga0209983_1006780
453 Ga0209974_10005400
454 Ga0207428_10006074
455 Ga0207428_10082578
456 Ga0268265_10158446
457 Ga0265327_10072046
458 Ga0307408_100065552
459 Ga0316578_10078941
460 Ga0307413_10018305
461 Ga0307410_10032030
462 Ga0307407_10127287
463 Ga0307412_10030986
464 Ga0307409_100041635
465 Ga0307409_100077455
466 Ga0307416_100003483
467 Ga0307416_100008612
468 Ga0307414_10013238
469 Ga0316580_10010502
470 Ga0373957_0050419
471 Ga0373943_0010563
472 Ga0373946_0007047
473 Ga0373946_0042162
474 Ga0373927_0016184
475 Ga0373947_0027845
476 Ga0373937_0039182
477 Ga0316584_0003104
478 Ga0316584_0053257
479 Ga0373925_0004326
480 Ga0395900_0182771
481 Ga0400483_106608
482 Ga0400489_57544
483 Ga0439433_0008152
484 Ga0439462_0010201
485 Ga0439446_0021190
486 Ga0451577_0010737
487 Ga0453683_0102200
488 Ga0453684_0041823
489 Ga0451576_0024509
490 Ga0451576_0151578
491 Ga0495592_0004596
492 Ga0495629_0000007
493 Ga0495638_0038463
494 Ga0495639_0000012
495 Ga0495662_0028005
496 Ga0495662_0072753
497 Ga0495630_0151925
498 Ga0495666_0000100
499 Ga0495586_0001235
500 Ga0495667_0000141
501 Ga0495635_0009595
502 Ga0495657_0001132
503 Ga0495657_0004047
504 Ga0495599_0044516
505 Ga0495599_0159399
506 Ga0495658_0011676
507 Ga0495600_0134811
508 Ga0495581_0005941
509 Ga0495674_0003833
510 Ga0495674_0204147
511 Ga0495676_0013997
512 Ga0495680_0004930
513 Ga0495680_0061234
514 Ga0495684_0008370
515 Ga0495684_0051387
516 Ga0495684_0130943
517 Ga0496102_0002017
518 Ga0496103_0023711
519 Ga0496104_0005476
520 Ga0501292_008725
521 Ga0501031_0003077
522 Ga0501032_0025949
523 Ga0501033_0112521
524 Ga0501034_0037185
525 Ga0501036_0013102
526 Ga0501036_0041374
527 Ga0501037_0030808
528 Ga0501037_0068228
529 Ga0501037_0117884
530 Ga0501038_0001232
531 Ga0501038_0018464
532 Ga0501038_0024420
533 Ga0501039_0010324
534 Ga0501040_0001050
535 Ga0501041_0000047
536 Ga0501041_0008761
537 Ga0501041_0049563
538 Ga0501042_0000208
539 Ga0501042_0089259
540 Ga0501043_0017792
541 Ga0501043_0037881
542 Ga0501046_0003563
543 Ga0501046_0004636
544 Ga0501046_0006402
545 Ga0501048_0015438
546 Ga0501048_0153743
547 Ga0501068_0020898
548 Ga0501068_0054295
549 Ga0501071_0001120
550 Ga0501071_0038316
551 Ga0501072_0000581
552 Ga0501072_0093046
553 Ga0501073_0000524
554 Ga0501075_0000702
555 Ga0501075_0001434
556 Ga0501076_0000105
557 Ga0501076_0014810
558 Ga0501076_0032126
559 Ga0501077_0000775
560 Ga0501077_0003353
561 Ga0501248_000086
562 Ga0501079_0003650
563 Ga0501079_0015048
564 Ga0501079_0021084
565 Ga0501080_0012212
566 Ga0501080_0033613
567 Ga0501081_0000125
568 Ga0501081_0000734
569 Ga0501081_0004209
570 Ga0501083_0034116
571 Ga0501274_000199
572 Ga0501035_0054192
573 Ga0501035_0181486
574 Ga0501045_0001282
575 Ga0501045_0014028
576 nmdc:mga03n38_7463_c1
577 nmdc:mga0yw44_115734_c1
578 nmdc:mga0k408_21422_c1
579 nmdc:mga0k408_24325_c1
580 nmdc:mga0k408_79171_c1
581 nmdc:mga06z11_18162_c1
582 nmdc:mga06z11_51708_c1
583 nmdc:mga06z11_8192_c1
584 nmdc:mga07m45_1371_c1
585 nmdc:mga05p37_104646_c1
586 nmdc:mga05p37_11509_c1
587 nmdc:mga05p37_1619_c1
588 nmdc:mga05p37_1789_c1
589 nmdc:mga05p37_242262_c1
590 nmdc:mga05p37_25688_c1
591 nmdc:mga05p37_45703_c1
592 nmdc:mga05p37_5179_c1
593 nmdc:mga05p37_54152_c1
594 nmdc:mga05p37_60893_c1
595 nmdc:mga05p37_62117_c1
596 nmdc:mga05p37_69032_c1
597 nmdc:mga09592_14312_c1
598 nmdc:mga09592_1870_c1
599 nmdc:mga0qj67_4360_c1
600 nmdc:mga0qj67_586_c1
601 nmdc:mga06r32_123725_c1
602 nmdc:mga06r32_171423_c1
603 nmdc:mga06r32_1731_c1
604 nmdc:mga06r32_19330_c1
605 nmdc:mga06r32_4505_c1
606 nmdc:mga06r32_7145_c1
607 nmdc:mga08y16_27791_c1
608 nmdc:mga08y16_4974_c1
609 nmdc:mga0n895_148423_c1
610 nmdc:mga0n895_38908_c1
611 nmdc:mga0rr50_33901_c1
612 nmdc:mga0a205_19340_c1
613 nmdc:mga0a205_20631_c1
614 nmdc:mga0a205_27946_c1
615 nmdc:mga0a205_8938_c1
616 Ga0495655_0000057
617 Ga0500566_0007324
618 Ga0500555_000008
619 Ga0500555_000371
620 Ga0500568_0009195
621 Ga0500616_0000173
622 Ga0500645_000077
623 Ga0501084_0000369
624 Ga0501084_0009766
625 Ga0501084_0035435
626 Ga0501082_0000274
627 Ga0501082_0002138
628 Ga0530510_0000571
629 Ga0530510_0001640
630 Ga0530510_0036765

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00158

Sigma54_activat

Sigma-54 interaction domain

191

358

0.99

PF00072

Response_reg

Response regulator receiver domain

53

163

0.98

PF02954

HTH_8

Bacterial regulatory protein, Fis family

465

506

0.93

PF14532

Sigma54_activ_2

Sigma-54 interaction domain

192

362

0.92

PF07728

AAA_5

AAA domain (dynein-related subfamily)

214

348

0.82

PF00004

AAA

ATPase family associated with various cellular activities (AAA)

215

352

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
1ny6-assembly1.cif.gz_B crystal structure of sigm54 activator (aaa+ atpase) in the active state 0.9704 157 390
4bs1-assembly1.cif.gz_B-1 mub is an aaaplus atpase that forms helical filaments to control target selection for dna transposition 0.9699 155 324
4qhs-assembly1.cif.gz_F crystal structure of aaa+sigma 54 activator domain of the flagellar regulatory protein flrc of vibrio cholerae in nucleotide free state 0.9684 155 386
6jdi-assembly1.cif.gz_A central domain of fleq h287n mutant in complex with atpgs and mg 0.9684 155 390
6jdl-assembly1.cif.gz_A central domain of fleq h287a mutant in complex with atpgs and mg 0.9674 155 390
ID Description Score Start End Superfamily
5m7nA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9846 155 322 3.40.50.300
af_Q06065_316_382_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9768 325 390 1.10.8.60
1ojlB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9693 155 323 3.40.50.300
af_P76016_496_565_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9667 327 390 1.10.8.60
2c98A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.964 155 325 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A529FBT6-F1-model_v4 Sigma-54 factor interaction domain-containing protein 0.9983 190 313 GO:0005524
GO:0006355
AF-A0A509LD02-F1-model_v4 Sigma-54-dependent Fis family transcriptional regulator 0.9964 156 342 GO:0005524
GO:0006355
GO:0016887
AF-A0A2V7HYG0-F1-model_v4 Fis family transcriptional regulator 0.9928 162 282 GO:0005524
GO:0006355
GO:0016887
AF-A0A496Z807-F1-model_v4 Sigma-54-dependent Fis family transcriptional regulator 0.9908 156 325 GO:0005524
GO:0006355
GO:0016887
AF-A0A2V8ULU9-F1-model_v4 Sigma-54 factor interaction domain-containing protein 0.9853 207 333 GO:0005524
GO:0006355

Map