F399964

General Info

Members Datasets Scaffolds Average Seq Length
308 224 210 420

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2902405164|2902405473
Length 441
Sequence LVNPPWDYRNSIYFGCREPHLPLELGYSAALLAASGHEVLLVDAHLEGLTAETAADRVVAFAPGMTVVATAPTYLFWRCAPPELRVPRAFLDTLAGRGGTSVAVGPHGSATPRPVLDKLGCDIVVRGECEEVVARLAGLGDLRTETLRTETLRTETLRSVPALAFRDGESAHVTGAPHAGRFTDLPALRWPEGWIARHRHHHHRFDAAPDGPGAEVEASRGCPYTCSFCAKIDFRDAYRRRDLVHVLDEIDGLIAQGVTYVYFVDEIFLPQKPLLEALVARDLRFGIQTRIDLWKPDMLDLLGAAGCVSIEAGIESLTEAGRAALDKRCRASTDDLAERLIHARRSVPFVQANLIAMAGDDPDLVATWRDRLRGQGVWANDPVPLYPYPSSPDYRRLWGAPDDQAWERAHAHYLGQFAQFSDIQDERPLPLSELEAACGCC

Samples

Sample ID Description Type Environment
1 2507262055 Bradyrhizobium sp. WSM1417 Isolate Nodule
2 2508501009 Bradyrhizobium sp. WSM471 Isolate Nodule
3 2508501042 Bradyrhizobium sp. WSM1253 Isolate Nodule
4 2508501128 Bradyrhizobium sp. ARR65 Isolate Nodule
5 2513237098 Bradyrhizobium elkanii WSM2783 Isolate Nodule
6 2513237161 Bradyrhizobium sp. WSM2793 Isolate Nodule
7 2515154112 Bradyrhizobium sp. WSM4349 Isolate Nodule
8 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
9 2617270735 Bradyrhizobium shewense ERR11 Isolate Nodule
10 2617270741 Bradyrhizobium yuanmingense CCBAU 10071 Isolate Nodule
11 2824679649 Bradyrhizobium sp.HAMBI 2116 Isolate Unclassified
12 2824704595 Bradyrhizobium sp. HAMBI 2150 Isolate Unclassified
13 2824732956 Bradyrhizobium sp. HAMBI 2153 Isolate Unclassified
14 2824746037 Bradyrhizobium sp. HAMBI 2299 Isolate Unclassified
15 2824753945 Bradyrhizobium sp. HAMBI 2128 Isolate Unclassified
16 2824763712 Bradyrhizobium sp. HAMBI 2129 Isolate Unclassified
17 2838122688 Bradyrhizobium sp. CIR3A Isolate Nodule
18 2841941048 Bradyrhizobium sp. SBR1B Isolate Nodule
19 2841949485 Bradyrhizobium sp. ERR14 Isolate Nodule
20 2841966195 Bradyrhizobium sp. CIR18 Isolate Nodule
21 2841974524 Bradyrhizobium sp. CIR48 Isolate Nodule
22 2841983080 Bradyrhizobium sp. IAR9 Isolate Nodule
23 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
24 2861691609 Methylorubrum thiocyanatum DSM 11490 Isolate Rhizosphere
25 2874590934 Bradyrhizobium canariense UBMA181 Isolate Nodule
26 2874645413 Bradyrhizobium canariense UBMA122 Isolate Nodule
27 2876771140 Bradyrhizobium canariense UBMA192 Isolate Nodule
28 2876818435 Bradyrhizobium canariense UBMA195 Isolate Nodule
29 2879074833 Bradyrhizobium canariense UBMA171 Isolate Nodule
30 2879099564 Bradyrhizobium japonicum UBMA197 Isolate Nodule
31 2879127579 Bradyrhizobium canariense UBMA052 Isolate Nodule
32 2879142872 Bradyrhizobium canariense UBMA061 Isolate Nodule
33 2881665667 Bradyrhizobium vignae LMG 28791 Isolate Unclassified
34 2902330777 Methylobacterium sp. 2A Isolate Unclassified
35 2902405164 Methylobacterium sp. P1-11 Isolate Unclassified
36 2903768456 Bradyrhizobium sp. Leo121 Isolate Unclassified
37 2904711408 Bradyrhizobium sp. USDA 3456 Isolate Unclassified
38 2908775508 Bradyrhizobium sp. SUTN9-2 Isolate Unclassified
39 2922386360 Bradyrhizobium archetypum WSM 1744 Isolate Nodule
40 2922393267 Bradyrhizobium sp. WBAH10 Isolate Nodule
41 2932784394 Bradyrhizobium sp. S3.2.12 Isolate Nodule
42 2932818245 Bradyrhizobium sp. S3.9.1 Isolate Nodule
43 2932828146 Bradyrhizobium sp. S3.9.2 Isolate Nodule
44 2935608549 Bradyrhizobium sp. RT6a Isolate Nodule
45 2935648319 Bradyrhizobium sp. JR4.3 Isolate Nodule
46 2935656913 Bradyrhizobium sp. JR5.3 Isolate Nodule
47 2935703347 Bradyrhizobium sp. LA6.10 Isolate Nodule
48 2935769743 Bradyrhizobium sp. LB12.1 Isolate Nodule
49 2935777560 Bradyrhizobium sp. LB14.3 Isolate Nodule
50 2935785616 Bradyrhizobium sp. LB5.2 Isolate Nodule
51 2935793552 Bradyrhizobium sp. LB8.2 Isolate Nodule
52 2935819856 Bradyrhizobium sp. RT3b Isolate Nodule
53 2935847175 Bradyrhizobium sp. RT5a Isolate Nodule
54 2935908558 Bradyrhizobium sp. F1.1.1 Isolate Nodule
55 2935916978 Bradyrhizobium sp. F1.13.3 Isolate Nodule
56 2935926038 Bradyrhizobium sp. F1.2.1 Isolate Nodule
57 2935934488 Bradyrhizobium sp. F1.2.2 Isolate Nodule
58 2935942939 Bradyrhizobium sp. F1.2.6 Isolate Nodule
59 2935951376 Bradyrhizobium sp. F1.2.8 Isolate Nodule
60 2935967501 Bradyrhizobium sp. F1.6.2 Isolate Nodule
61 2935975950 Bradyrhizobium sp. GM2.2 Isolate Nodule
62 2935984226 Bradyrhizobium sp. i1.15.2 Isolate Nodule
63 2936011229 Bradyrhizobium sp. JR1.1 Isolate Nodule
64 2936019824 Bradyrhizobium sp. JR1.5 Isolate Nodule
65 2936028420 Bradyrhizobium sp. JR1.7 Isolate Nodule
66 2936046547 Bradyrhizobium sp. JR3.12 Isolate Nodule
67 2936055302 Bradyrhizobium sp. JR4.1 Isolate Nodule
68 3005483717 Bradyrhizobium agreste CNPSo 4010 Isolate Unclassified
69 3005587118 Bradyrhizobium glycinis CNPSo 4016 Isolate Unclassified
70 3300003693 Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_49 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
71 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
72 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
73 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
74 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
75 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
76 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
77 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
78 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
79 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
80 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
81 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
82 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
83 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
84 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
85 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
86 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
87 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
88 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
89 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
90 3300021324 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4 Metagenome Nodule
91 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
92 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
93 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
94 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
95 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
96 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
97 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
98 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
99 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
108 3300027357 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes) (version 2) Metagenome Nodule
109 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
110 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
112 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
113 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
114 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
115 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
116 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
117 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
118 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
119 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
120 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
121 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
122 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
123 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
124 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
125 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
126 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
127 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
128 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
129 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
130 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
131 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
132 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
133 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
134 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
135 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
136 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
137 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
138 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
139 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
140 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
141 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
142 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
143 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
144 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
145 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
146 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
147 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
148 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
149 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
150 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
151 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
152 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
153 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
154 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
155 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
156 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
157 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
158 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
159 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
160 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
161 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
162 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
163 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
164 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
165 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
166 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
167 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
168 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
169 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
170 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
171 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
172 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
173 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
174 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
175 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
176 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
177 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
178 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
179 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
180 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
181 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
182 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
183 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
184 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
185 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
186 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
187 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
188 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
189 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
190 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
191 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
192 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
193 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
194 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
195 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
196 641522639 Methylobacterium sp. 4-46 Isolate Nodule
197 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule
198 8016522445 Bradyrhizobium sp. LM6.9 Isolate Nodule
199 8016530956 Bradyrhizobium sp. LM6.11 Isolate Nodule
200 8016539877 Bradyrhizobium sp. LM6.10 Isolate Nodule
201 8016548790 Bradyrhizobium sp. LM3.6 Isolate Nodule
202 8016557553 Bradyrhizobium sp. LM3.4 Isolate Nodule
203 8016575299 Bradyrhizobium sp. LM2.9 Isolate Nodule
204 8016595262 Bradyrhizobium sp. LM2.3 Isolate Nodule
205 8016603502 Bradyrhizobium sp. LB7.2 Isolate Nodule
206 8016613128 Bradyrhizobium sp. LB7.1 Isolate Nodule
207 8016622563 Bradyrhizobium sp. LB13.1 Isolate Nodule
208 8016630954 Bradyrhizobium sp. F1.13.1 Isolate Nodule
209 8017057580 Bradyrhizobium sp. S3.7.6 Isolate Nodule
210 8019530166 Bradyrhizobium sp. LM4.3 Isolate Nodule
211 8019538911 Bradyrhizobium sp. LB9.1b Isolate Nodule
212 8019547302 Bradyrhizobium sp. LB1.3 Isolate Nodule
213 8019576017 Bradyrhizobium sp. i1.7.7 Isolate Nodule
214 8019586578 Bradyrhizobium sp. i1.4.4 Isolate Nodule
215 8019597564 Bradyrhizobium sp. i1.3.6 Isolate Nodule
216 8019619141 Bradyrhizobium sp. GM7.3 Isolate Nodule
217 8019629233 Bradyrhizobium sp. GM6.1 Isolate Nodule
218 8019638758 Bradyrhizobium sp. GM5.1 Isolate Nodule
219 8019659431 Bradyrhizobium sp. GM22.5 Isolate Nodule
220 8019668869 Bradyrhizobium sp. GM2.4 Isolate Nodule
221 8019678201 Bradyrhizobium sp. GM0.4 Isolate Nodule
222 8019687851 Bradyrhizobium sp. F1.13.4 Isolate Nodule
223 8056681323 Bradyrhizobium cenepequi CNPSo 4026 Isolate Nodule
224 8056689827 Bradyrhizobium semiaridum WSM 1704 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 67.53
Metatranscriptomes 0.65
Isolates 31.82

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.97
Nodule 30.19
Rhizoplane 0.97
Rhizosphere 52.27
Stem 0
Stem Tuber 0
Unclassified 15.58

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0032354_1057538 3300003693 Bacteria 2329
2 Ga0070658_10088349 3300005327 Bacteria 2552
3 Ga0070671_100003762 3300005355 Bacteria 11910
4 Ga0070679_100068228 3300005530 Bacteria 3547
5 Ga0070679_100112708 3300005530 Bacteria 2705
6 Ga0070672_100037451 3300005543 Bacteria 3701
7 Ga0068855_100031578 3300005563 Bacteria 6325
8 Ga0068855_100125578 3300005563 Bacteria 2934
9 Ga0081538_10017318 3300005981 Bacteria 5475
10 Ga0081538_10026450 3300005981 Bacteria 4057
11 Ga0070717_10010623 3300006028 Bacteria 6959
12 Ga0075433_10031356 3300006852 Bacteria 4544
13 Ga0075434_100000641 3300006871 Bacteria 27050
14 Ga0099824_1017765 3300006942 Bacteria 6053
15 Ga0099824_1020083 3300006942 Bacteria 5013
16 Ga0099794_10012932 3300007265 Bacteria 3619
17 Ga0099795_10013255 3300007788 Bacteria 2525
18 Ga0105240_10001443 3300009093 Bacteria 40608
19 Ga0105237_10068435 3300009545 Bacteria 3544
20 Ga0157369_10038685 3300013105 Bacteria 5216
21 Ga0182008_10019967 3300014497 Bacteria 3453
22 Ga0206350_10288246 3300020080 Bacteria 1986
23 Ga0214544_1000004 3300021320 Bacteria 455869
24 Ga0214542_1000001 3300021321 Bacteria 1018696
25 Ga0214545_1000001 3300021324 Bacteria 1092817
26 Ga0214543_1000006 3300021327 Bacteria 443395
27 Ga0213872_10000159 3300021361 Bacteria 61788
28 Ga0213874_10000475 3300021377 Bacteria 8035
29 Ga0213874_10001204 3300021377 Bacteria 5314
30 Ga0213876_10000986 3300021384 Bacteria 18701
31 Ga0213876_10001901 3300021384 Bacteria 12562
32 Ga0213876_10005029 3300021384 Bacteria 7291
33 Ga0213876_10078828 3300021384 Bacteria 1741
34 Ga0213875_10000098 3300021388 Bacteria 98684
35 Ga0213875_10003586 3300021388 Bacteria 8795
36 Ga0213875_10006525 3300021388 Bacteria 6112
37 Ga0213875_10034747 3300021388 Bacteria 2380
38 Ga0209677_101443 3300025253 Bacteria 10274
39 Ga0209233_1005041 3300025261 Bacteria 4425
40 Ga0209758_1003453 3300025297 Bacteria 14335
41 Ga0207705_10110921 3300025909 Bacteria 2027
42 Ga0207705_10147674 3300025909 Bacteria 1760
43 Ga0207695_10001451 3300025913 Bacteria 39681
44 Ga0207660_10149084 3300025917 Bacteria 1796
45 Ga0207652_10013845 3300025921 Bacteria 6527
46 Ga0207644_10000923 3300025931 Bacteria 18661
47 Ga0207691_10051837 3300025940 Bacteria 3749
48 Ga0207667_10260657 3300025949 Bacteria 1773
49 Ga0207698_10064190 3300026142 Bacteria 2877
50 Ga0207698_10226419 3300026142 Bacteria 1694
51 Ga0209389_1000010 3300027296 Bacteria 223892
52 Ga0209389_1000216 3300027296 Bacteria 40414
53 Ga0209589_1000016 3300027357 Bacteria 223788
54 Ga0209489_100016 3300027361 Bacteria 223873
55 Ga0209489_102145 3300027361 Bacteria 40414
56 Ga0209179_1012926 3300027512 Bacteria 1508
57 Ga0265339_10002813 3300031249 Bacteria 12363
58 Ga0265327_10021521 3300031251 Bacteria 3889
59 Ga0265316_10064242 3300031344 Bacteria 2844
60 Ga0307408_100139587 3300031548 Bacteria 1901
61 Ga0307413_10042354 3300031824 Bacteria 2675
62 Ga0307409_100177450 3300031995 Bacteria 1882
63 Ga0307415_100045606 3300032126 Bacteria 2940
64 Ga0395899_0000003 3300037312 Bacteria 1232684
65 Ga0395899_0001185 3300037312 Bacteria 22977
66 Ga0395899_0227541 3300037312 Bacteria 1289
67 Ga0395900_0000394 3300037418 Bacteria 63170
68 Ga0395900_0002652 3300037418 Bacteria 19546
69 Ga0395900_0441210 3300037418 Bacteria 1259
70 Ga0395898_0001615 3300037466 Bacteria 30637
71 Ga0395898_0006497 3300037466 Bacteria 12489
72 Ga0395898_0035392 3300037466 Bacteria 4966
73 Ga0395898_0082378 3300037466 Bacteria 3101
74 Ga0395905_0155317 3300037471 Bacteria 2152
75 Ga0395905_0158815 3300037471 Bacteria 2126
76 Ga0436364_0094850 3300037853 Bacteria 2987
77 Ga0436364_0142049 3300037853 Bacteria 9095
78 Ga0436364_0157884 3300037853 Bacteria 2377
79 Ga0436364_0516628 3300037853 Bacteria 4978
80 Ga0436364_0698940 3300037853 Bacteria 2308
81 Ga0436364_0832652 3300037853 Bacteria 2066
82 Ga0436364_1020526 3300037853 Bacteria 2499
83 Ga0436364_1061434 3300037853 Bacteria 3461
84 Ga0436364_1203706 3300037853 Bacteria 3937
85 Ga0436364_1390920 3300037853 Bacteria 113944
86 Ga0395901_0029602 3300038443 Bacteria 5639
87 Ga0395901_0045487 3300038443 Bacteria 4555
88 Ga0395901_0135419 3300038443 Bacteria 2589
89 Ga0395901_0147662 3300038443 Bacteria 2471
90 Ga0395901_0211452 3300038443 Bacteria 2030
91 Ga0436365_0403425 3300039437 Bacteria 50449
92 Ga0436365_0736793 3300039437 Bacteria 96466
93 Ga0436365_0793683 3300039437 Bacteria 6732
94 Ga0436365_1793529 3300039437 Bacteria 27914
95 Ga0436360_0763932 3300039438 Unclassified 4192
96 Ga0436360_1105242 3300039438 Bacteria 2139
97 Ga0436360_1369787 3300039438 Bacteria 3191
98 Ga0436361_0335407 3300039447 Bacteria 151349
99 Ga0436361_0410868 3300039447 Bacteria 1656
100 Ga0436361_0453834 3300039447 Bacteria 16680
101 Ga0436363_0020776 3300039450 Bacteria 8303
102 Ga0436363_0107549 3300039450 Bacteria 3267
103 Ga0436363_0210401 3300039450 Bacteria 1772
104 Ga0436363_0612561 3300039450 Bacteria 11040
105 Ga0436363_1530268 3300039450 Bacteria 33359
106 Ga0436363_1562423 3300039450 Bacteria 4844
107 Ga0436362_0434815 3300039453 Bacteria 10837
108 Ga0466969_0060428 3300044656 Bacteria 1842
109 Ga0466972_0000149 3300044658 Bacteria 56799
110 Ga0466972_0000502 3300044658 Bacteria 19583
111 Ga0466966_0001034 3300044684 Bacteria 17813
112 Ga0466966_0054309 3300044684 Bacteria 2539
113 Ga0466966_0072755 3300044684 Bacteria 2151
114 Ga0466961_0000009 3300044693 Bacteria 139001
115 Ga0466963_0006950 3300044694 Bacteria 6734
116 Ga0466963_0026743 3300044694 Bacteria 3692
117 Ga0466963_0097169 3300044694 Bacteria 2012
118 Ga0453684_0010952 3300044712 Bacteria 15330
119 Ga0466971_0049758 3300044719 Bacteria 1886
120 Ga0466968_0007083 3300044735 Bacteria 4253
121 Ga0466968_0007656 3300044735 Bacteria 4114
122 Ga0466970_0044783 3300044765 Bacteria 2356
123 Ga0466957_0007948 3300044842 Bacteria 6017
124 Ga0466959_0000527 3300045049 Bacteria 22193
125 Ga0466959_0019440 3300045049 Bacteria 4995
126 Ga0466959_0022295 3300045049 Bacteria 4681
127 Ga0466959_0051201 3300045049 Bacteria 3030
128 Ga0466958_0025385 3300045836 Bacteria 3494
129 Ga0466958_0028416 3300045836 Bacteria 3316
130 Ga0466967_0017899 3300045976 Bacteria 5645
131 Ga0466967_0020374 3300045976 Bacteria 5358
132 Ga0495590_0000721 3300046457 Bacteria 15128
133 Ga0495590_0004450 3300046457 Bacteria 5653
134 Ga0495638_0001239 3300046460 Bacteria 24050
135 Ga0495584_0004610 3300046491 Bacteria 7390
136 Ga0495606_0001733 3300046507 Bacteria 28021
137 Ga0495610_0013168 3300046512 Bacteria 4929
138 Ga0495631_0027171 3300046518 Bacteria 2622
139 Ga0495632_0000379 3300046519 Bacteria 42470
140 Ga0495643_0001666 3300046522 Bacteria 19506
141 Ga0495643_0022202 3300046522 Bacteria 3624
142 Ga0495597_0005526 3300046542 Bacteria 6685
143 Ga0495668_0000223 3300046616 Bacteria 81874
144 Ga0495668_0019907 3300046616 Bacteria 3862
145 Ga0495611_0017217 3300046648 Bacteria 3090
146 Ga0495625_0000382 3300046660 Bacteria 67633
147 Ga0495669_0002413 3300046684 Bacteria 7655
148 Ga0495649_0000693 3300046694 Bacteria 27497
149 Ga0495649_0020005 3300046694 Bacteria 3757
150 Ga0495589_0004075 3300046794 Bacteria 7831
151 Ga0495686_0010766 3300047472 Bacteria 6488
152 Ga0495626_0040107 3300048091 Bacteria 2213
153 Ga0496109_0242899 3300048912 Bacteria 1695
154 Ga0496110_0230238 3300048913 Bacteria 1685
155 Ga0496115_0000749 3300048918 Bacteria 23899
156 Ga0496121_0017212 3300048924 Bacteria 7402
157 Ga0496121_0041859 3300048924 Bacteria 3995
158 Ga0496124_0225193 3300048927 Bacteria 1407
159 Ga0495682_0027930 3300049460 Bacteria 2092
160 Ga0501031_0153713 3300049568 Bacteria 1504
161 Ga0501033_0072150 3300049570 Bacteria 2536
162 Ga0501034_0316985 3300049571 Bacteria 1492
163 Ga0501036_0003981 3300049572 Bacteria 11871
164 Ga0501037_0001833 3300049573 Bacteria 15431
165 Ga0501037_0026106 3300049573 Bacteria 4317
166 Ga0501037_0044569 3300049573 Bacteria 3258
167 Ga0501038_0008868 3300049574 Bacteria 9230
168 Ga0501038_0036575 3300049574 Bacteria 4308
169 Ga0501039_0004314 3300049575 Bacteria 10721
170 Ga0501039_0042149 3300049575 Bacteria 3527
171 Ga0501040_0108627 3300049576 Bacteria 1939
172 Ga0501041_0003044 3300049577 Bacteria 9618
173 Ga0501042_0004805 3300049578 Bacteria 8636
174 Ga0501046_0003095 3300049580 Bacteria 15364
175 Ga0501047_0018243 3300049581 Bacteria 6725
176 Ga0501047_0029069 3300049581 Bacteria 5331
177 Ga0501047_0040949 3300049581 Unclassified 4479
178 Ga0501070_0003214 3300049586 Bacteria 14210
179 Ga0501070_0004904 3300049586 Bacteria 11427
180 Ga0501070_0005760 3300049586 Bacteria 10566
181 Ga0501070_0188268 3300049586 Bacteria 1697
182 Ga0501071_0014009 3300049587 Bacteria 5479
183 Ga0501073_0014612 3300049589 Bacteria 5705
184 Ga0501073_0204356 3300049589 Bacteria 1366
185 Ga0501074_0010677 3300049590 Bacteria 6668
186 Ga0501074_0040254 3300049590 Bacteria 3386
187 Ga0501074_0051667 3300049590 Bacteria 2966
188 Ga0501075_0036283 3300049591 Bacteria 3680
189 Ga0501076_0011665 3300049592 Bacteria 6558
190 Ga0501077_0030244 3300049593 Bacteria 3446
191 Ga0501079_0058817 3300049741 Bacteria 2966
192 Ga0501079_0112542 3300049741 Bacteria 2115
193 Ga0501080_0010310 3300049742 Bacteria 8545
194 Ga0501080_0036172 3300049742 Bacteria 4610
195 Ga0501080_0047224 3300049742 Bacteria 4008
196 Ga0501081_0123527 3300049743 Bacteria 1846
197 Ga0501035_0016727 3300049822 Bacteria 6762
198 Ga0501035_0068158 3300049822 Bacteria 3155
199 Ga0501044_0000155 3300049823 Bacteria 84608
200 Ga0501044_0025542 3300049823 Bacteria 6262
201 Ga0501044_0033097 3300049823 Bacteria 5432
202 Ga0501044_0092009 3300049823 Bacteria 3059
203 Ga0501044_0224593 3300049823 Bacteria 1828
204 Ga0501045_0063188 3300049824 Bacteria 2716
205 nmdc:mga0n895_2275_c1 3300050512 Bacteria 14895
206 nmdc:mga0a205_6325_c1 3300050515 Bacteria 10690
207 Ga0495619_0130636 3300053085 Unclassified 1726
208 Ga0501084_0050662 3300054114 Bacteria 3474
209 Ga0501082_0001011 3300060353 Bacteria 24862
210 Ga0530510_0004248 3300061734 Bacteria 9905

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037418 Ga0395900_0441210 Ga0395900_0441210_199_1248 340
2 iso_pu_bacteria 8016522445 8016530858 345
3 3300046616 Ga0495668_0019907 Ga0495668_0019907_47_1117 347
4 3300037312 Ga0395899_0227541 Ga0395899_0227541_15_1094 351
5 3300053085 Ga0495619_0130636 Ga0495619_0130636_608_1690 352
6 3300039450 Ga0436363_0210401 Ga0436363_0210401_591_1748 359
7 3300048913 Ga0496110_0230238 Ga0496110_0230238_13_1101 359
8 3300044719 Ga0466971_0049758 Ga0466971_0049758_735_1871 362
9 3300049590 Ga0501074_0051667 Ga0501074_0051667_1759_2895 370
10 3300005530 Ga0070679_100068228 Ga0070679_1000682282 379
11 3300049568 Ga0501031_0153713 Ga0501031_0153713_27_1208 383
12 3300049590 Ga0501074_0010677 Ga0501074_0010677_63_1250 383
13 3300009545 Ga0105237_10068435 Ga0105237_100684352 386
14 3300048912 Ga0496109_0242899 Ga0496109_0242899_25_1230 391
15 3300037853 Ga0436364_0516628 Ga0436364_0516628_618_1847 395
16 3300039447 Ga0436361_0335407 Ga0436361_0335407_116490_117686 395
17 3300039438 Ga0436360_1369787 Ga0436360_1369787_1720_3009 401
18 3300013105 Ga0157369_10038685 Ga0157369_100386853 402
19 3300049581 Ga0501047_0040949 Ga0501047_0040949_34_1272 403
20 3300060353 Ga0501082_0001011 Ga0501082_0001011_10865_12097 403
21 3300005563 Ga0068855_100031578 Ga0068855_1000315782 404
22 3300025949 Ga0207667_10260657 Ga0207667_102606572 404
23 3300049586 Ga0501070_0004904 Ga0501070_0004904_9693_10985 409
24 3300025297 Ga0209758_1003453 Ga0209758_10034534 410
25 3300039437 Ga0436365_0793683 Ga0436365_0793683_5117_6400 410
26 3300037853 Ga0436364_1020526 Ga0436364_1020526_934_2226 411
27 3300045976 Ga0466967_0020374 Ga0466967_0020374_679_1965 411
28 3300048918 Ga0496115_0000749 Ga0496115_0000749_11274_12593 411
29 3300039450 Ga0436363_1562423 Ga0436363_1562423_1890_3182 414
30 3300014497 Ga0182008_10019967 Ga0182008_100199672 415
31 3300006942 Ga0099824_1017765 Ga0099824_10177654 416
32 3300021388 Ga0213875_10034747 Ga0213875_100347472 416
33 3300026142 Ga0207698_10064190 Ga0207698_100641902 416
34 3300027296 Ga0209389_1000216 Ga0209389_10002167 416
35 3300027361 Ga0209489_102145 Ga0209489_1021457 416
36 3300037853 Ga0436364_0094850 Ga0436364_0094850_663_1952 416
37 3300044656 Ga0466969_0060428 Ga0466969_0060428_266_1549 416
38 3300044684 Ga0466966_0001034 Ga0466966_0001034_15740_17026 416
39 3300044693 Ga0466961_0000009 Ga0466961_0000009_89218_90504 416
40 3300045049 Ga0466959_0000527 Ga0466959_0000527_20405_21691 416
41 3300045049 Ga0466959_0022295 Ga0466959_0022295_83_1366 416
42 3300045836 Ga0466958_0028416 Ga0466958_0028416_804_2090 416
43 3300049573 Ga0501037_0044569 Ga0501037_0044569_816_2102 416
44 3300049581 Ga0501047_0018243 Ga0501047_0018243_4653_5939 416
45 3300049822 Ga0501035_0016727 Ga0501035_0016727_3734_5020 416
46 3300021384 Ga0213876_10001901 Ga0213876_100019014 417
47 3300025909 Ga0207705_10110921 Ga0207705_101109212 417
48 3300039437 Ga0436365_0403425 Ga0436365_0403425_15245_16525 417
49 3300039438 Ga0436360_1105242 Ga0436360_1105242_593_1876 417
50 3300049571 Ga0501034_0316985 Ga0501034_0316985_147_1427 417
51 3300049573 Ga0501037_0026106 Ga0501037_0026106_2117_3406 417
52 3300049586 Ga0501070_0188268 Ga0501070_0188268_273_1553 417
53 3300049742 Ga0501080_0036172 Ga0501080_0036172_1900_3189 417
54 3300049823 Ga0501044_0000155 Ga0501044_0000155_45238_46518 417
55 3300049823 Ga0501044_0025542 Ga0501044_0025542_3819_5099 417
56 3300049823 Ga0501044_0092009 Ga0501044_0092009_401_1687 417
57 3300006942 Ga0099824_1020083 Ga0099824_10200832 418
58 3300021320 Ga0214544_1000004 Ga0214544_1000004128 418
59 3300021321 Ga0214542_1000001 Ga0214542_1000001225 418
60 3300021324 Ga0214545_1000001 Ga0214545_1000001292 418
61 3300021327 Ga0214543_1000006 Ga0214543_1000006289 418
62 3300021388 Ga0213875_10003586 Ga0213875_100035862 418
63 3300025253 Ga0209677_101443 Ga0209677_1014439 418
64 3300025261 Ga0209233_1005041 Ga0209233_10050412 418
65 3300027296 Ga0209389_1000010 Ga0209389_100001038 418
66 3300027357 Ga0209589_1000016 Ga0209589_1000016176 418
67 3300027361 Ga0209489_100016 Ga0209489_10001638 418
68 3300031548 Ga0307408_100139587 Ga0307408_1001395872 418
69 3300031824 Ga0307413_10042354 Ga0307413_100423542 418
70 3300031995 Ga0307409_100177450 Ga0307409_1001774502 418
71 3300032126 Ga0307415_100045606 Ga0307415_1000456062 418
72 3300037418 Ga0395900_0000394 Ga0395900_0000394_38989_40275 418
73 3300037466 Ga0395898_0006497 Ga0395898_0006497_3787_5073 418
74 3300037466 Ga0395898_0082378 Ga0395898_0082378_1624_2907 418
75 3300037471 Ga0395905_0158815 Ga0395905_0158815_794_2080 418
76 3300037853 Ga0436364_0142049 Ga0436364_0142049_615_1904 418
77 3300038443 Ga0395901_0029602 Ga0395901_0029602_3317_4603 418
78 3300038443 Ga0395901_0147662 Ga0395901_0147662_476_1759 418
79 3300039450 Ga0436363_0020776 Ga0436363_0020776_5733_7016 418
80 3300044658 Ga0466972_0000149 Ga0466972_0000149_8785_10071 418
81 3300044658 Ga0466972_0000502 Ga0466972_0000502_5405_6691 418
82 3300044694 Ga0466963_0097169 Ga0466963_0097169_200_1480 418
83 3300044735 Ga0466968_0007083 Ga0466968_0007083_1731_3017 418
84 3300044765 Ga0466970_0044783 Ga0466970_0044783_14_1300 418
85 3300046457 Ga0495590_0000721 Ga0495590_0000721_3011_4297 418
86 3300046457 Ga0495590_0004450 Ga0495590_0004450_2621_3907 418
87 3300046460 Ga0495638_0001239 Ga0495638_0001239_17212_18498 418
88 3300046491 Ga0495584_0004610 Ga0495584_0004610_3369_4655 418
89 3300046507 Ga0495606_0001733 Ga0495606_0001733_21832_23118 418
90 3300046512 Ga0495610_0013168 Ga0495610_0013168_2690_3976 418
91 3300046518 Ga0495631_0027171 Ga0495631_0027171_718_2004 418
92 3300046519 Ga0495632_0000379 Ga0495632_0000379_25592_26878 418
93 3300046522 Ga0495643_0001666 Ga0495643_0001666_2945_4231 418
94 3300046522 Ga0495643_0022202 Ga0495643_0022202_2042_3328 418
95 3300046542 Ga0495597_0005526 Ga0495597_0005526_1506_2792 418
96 3300046616 Ga0495668_0000223 Ga0495668_0000223_503_1789 418
97 3300046648 Ga0495611_0017217 Ga0495611_0017217_347_1633 418
98 3300046660 Ga0495625_0000382 Ga0495625_0000382_55555_56841 418
99 3300046684 Ga0495669_0002413 Ga0495669_0002413_4349_5635 418
100 3300046694 Ga0495649_0000693 Ga0495649_0000693_20659_21945 418
101 3300046694 Ga0495649_0020005 Ga0495649_0020005_1418_2704 418
102 3300046794 Ga0495589_0004075 Ga0495589_0004075_2620_3906 418
103 3300047472 Ga0495686_0010766 Ga0495686_0010766_486_1772 418
104 3300048091 Ga0495626_0040107 Ga0495626_0040107_491_1777 418
105 3300048924 Ga0496121_0017212 Ga0496121_0017212_4050_5339 418
106 3300049460 Ga0495682_0027930 Ga0495682_0027930_617_1903 418
107 3300049573 Ga0501037_0001833 Ga0501037_0001833_5208_6506 418
108 3300049575 Ga0501039_0042149 Ga0501039_0042149_862_2160 418
109 3300049580 Ga0501046_0003095 Ga0501046_0003095_7923_9221 418
110 3300049586 Ga0501070_0003214 Ga0501070_0003214_3955_5253 418
111 3300049590 Ga0501074_0040254 Ga0501074_0040254_1083_2381 418
112 3300049591 Ga0501075_0036283 Ga0501075_0036283_1038_2336 418
113 3300049741 Ga0501079_0112542 Ga0501079_0112542_610_1908 418
114 3300005355 Ga0070671_100003762 Ga0070671_1000037622 419
115 3300005543 Ga0070672_100037451 Ga0070672_1000374512 419
116 3300009093 Ga0105240_10001443 Ga0105240_1000144316 419
117 3300021377 Ga0213874_10000475 Ga0213874_100004755 419
118 3300021377 Ga0213874_10001204 Ga0213874_100012044 419
119 3300021384 Ga0213876_10005029 Ga0213876_100050292 419
120 3300021388 Ga0213875_10000098 Ga0213875_1000009855 419
121 3300025913 Ga0207695_10001451 Ga0207695_100014513 419
122 3300025917 Ga0207660_10149084 Ga0207660_101490842 419
123 3300025931 Ga0207644_10000923 Ga0207644_100009232 419
124 3300025940 Ga0207691_10051837 Ga0207691_100518372 419
125 3300031249 Ga0265339_10002813 Ga0265339_100028134 419
126 3300037312 Ga0395899_0001185 Ga0395899_0001185_8929_10212 419
127 3300037418 Ga0395900_0002652 Ga0395900_0002652_8381_9664 419
128 3300037466 Ga0395898_0001615 Ga0395898_0001615_21392_22675 419
129 3300037466 Ga0395898_0035392 Ga0395898_0035392_2422_3708 419
130 3300037471 Ga0395905_0155317 Ga0395905_0155317_640_1926 419
131 3300037853 Ga0436364_0832652 Ga0436364_0832652_396_1679 419
132 3300037853 Ga0436364_1061434 Ga0436364_1061434_1487_2776 419
133 3300037853 Ga0436364_1390920 Ga0436364_1390920_54371_55663 419
134 3300038443 Ga0395901_0045487 Ga0395901_0045487_742_2025 419
135 3300038443 Ga0395901_0135419 Ga0395901_0135419_635_1918 419
136 3300038443 Ga0395901_0211452 Ga0395901_0211452_331_1617 419
137 3300039437 Ga0436365_1793529 Ga0436365_1793529_18202_19494 419
138 3300039450 Ga0436363_0107549 Ga0436363_0107549_1086_2372 419
139 3300039450 Ga0436363_1530268 Ga0436363_1530268_25158_26450 419
140 3300039453 Ga0436362_0434815 Ga0436362_0434815_653_1945 419
141 3300044684 Ga0466966_0072755 Ga0466966_0072755_632_1909 419
142 3300044694 Ga0466963_0006950 Ga0466963_0006950_4295_5578 419
143 3300044694 Ga0466963_0026743 Ga0466963_0026743_1663_2940 419
144 3300044842 Ga0466957_0007948 Ga0466957_0007948_3725_5002 419
145 3300045049 Ga0466959_0051201 Ga0466959_0051201_892_2169 419
146 3300045836 Ga0466958_0025385 Ga0466958_0025385_62_1339 419
147 3300045976 Ga0466967_0017899 Ga0466967_0017899_1146_2429 419
148 3300048924 Ga0496121_0041859 Ga0496121_0041859_1091_2380 419
149 3300049574 Ga0501038_0008868 Ga0501038_0008868_6939_8234 419
150 3300049581 Ga0501047_0029069 Ga0501047_0029069_185_1471 419
151 3300049586 Ga0501070_0005760 Ga0501070_0005760_3285_4571 419
152 3300049589 Ga0501073_0014612 Ga0501073_0014612_4319_5605 419
153 3300049742 Ga0501080_0010310 Ga0501080_0010310_37_1323 419
154 3300049823 Ga0501044_0033097 Ga0501044_0033097_2602_3888 419
155 3300049823 Ga0501044_0224593 Ga0501044_0224593_520_1803 419
156 3300005327 Ga0070658_10088349 Ga0070658_100883492 420
157 3300005530 Ga0070679_100112708 Ga0070679_1001127083 420
158 3300006028 Ga0070717_10010623 Ga0070717_100106235 420
159 3300025909 Ga0207705_10147674 Ga0207705_101476742 420
160 3300025921 Ga0207652_10013845 Ga0207652_100138452 420
161 3300031251 Ga0265327_10021521 Ga0265327_100215213 420
162 3300031344 Ga0265316_10064242 Ga0265316_100642423 420
163 3300037853 Ga0436364_0698940 Ga0436364_0698940_50_1330 420
164 3300037853 Ga0436364_1203706 Ga0436364_1203706_143_1435 420
165 3300044735 Ga0466968_0007656 Ga0466968_0007656_546_1853 420
166 3300049822 Ga0501035_0068158 Ga0501035_0068158_1285_2571 420
167 3300021361 Ga0213872_10000159 Ga0213872_1000015926 421
168 iso_pu_bacteria 2844533157 2844535506 421
169 iso_pu_bacteria 2545555834 2545673091 422
170 iso_pu_bacteria 2861691609 2861694559 422
171 iso_pu_bacteria 2902330777 2902331458 422
172 iso_pu_bacteria 641522639 641642305 422
173 iso_pu_bacteria 643348564 643598213 422
174 iso_pu_bacteria 2508501128 2509152019 423
175 3300005563 Ga0068855_100125578 Ga0068855_1001255782 424
176 3300020080 Ga0206350_10288246 Ga0206350_102882462 424
177 3300021384 Ga0213876_10078828 Ga0213876_100788282 424
178 3300021388 Ga0213875_10006525 Ga0213875_100065255 424
179 3300026142 Ga0207698_10226419 Ga0207698_102264191 424
180 3300044712 Ga0453684_0010952 Ga0453684_0010952_9923_11209 424
181 iso_pu_bacteria 2507262055 2507510798 424
182 iso_pu_bacteria 2508501009 2508544597 424
183 iso_pu_bacteria 2508501042 2508693966 424
184 iso_pu_bacteria 2513237098 2513671270 424
185 iso_pu_bacteria 2513237161 2514017335 424
186 iso_pu_bacteria 2515154112 2515628061 424
187 iso_pu_bacteria 2617270735 2617351229 424
188 iso_pu_bacteria 2617270741 2617378500 424
189 iso_pu_bacteria 2824679649 2824680364 424
190 iso_pu_bacteria 2824704595 2824706011 424
191 iso_pu_bacteria 2824732956 2824737893 424
192 iso_pu_bacteria 2824746037 2824748454 424
193 iso_pu_bacteria 2824753945 2824758871 424
194 iso_pu_bacteria 2824763712 2824769342 424
195 iso_pu_bacteria 2838122688 2838122744 424
196 iso_pu_bacteria 2841941048 2841946203 424
197 iso_pu_bacteria 2841949485 2841951000 424
198 iso_pu_bacteria 2841966195 2841973389 424
199 iso_pu_bacteria 2841974524 2841982523 424
200 iso_pu_bacteria 2841983080 2841988811 424
201 iso_pu_bacteria 2874590934 2874592457 424
202 iso_pu_bacteria 2874645413 2874650154 424
203 iso_pu_bacteria 2876771140 2876775319 424
204 iso_pu_bacteria 2876818435 2876826328 424
205 iso_pu_bacteria 2879074833 2879079593 424
206 iso_pu_bacteria 2879099564 2879102430 424
207 iso_pu_bacteria 2879127579 2879129268 424
208 iso_pu_bacteria 2879142872 2879144910 424
209 iso_pu_bacteria 2881665667 2881667723 424
210 iso_pu_bacteria 2902405164 2902405473 424
211 iso_pu_bacteria 2903768456 2903768686 424
212 iso_pu_bacteria 2904711408 2904720135 424
213 iso_pu_bacteria 2908775508 2908780743 424
214 iso_pu_bacteria 2922386360 2922390366 424
215 iso_pu_bacteria 2922393267 2922397492 424
216 iso_pu_bacteria 2932784394 2932792264 424
217 iso_pu_bacteria 2932818245 2932826369 424
218 iso_pu_bacteria 2932828146 2932836415 424
219 iso_pu_bacteria 2935608549 2935612420 424
220 iso_pu_bacteria 2935648319 2935650254 424
221 iso_pu_bacteria 2935656913 2935658401 424
222 iso_pu_bacteria 2935703347 2935711200 424
223 iso_pu_bacteria 2935769743 2935775334 424
224 iso_pu_bacteria 2935777560 2935779464 424
225 iso_pu_bacteria 2935785616 2935791468 424
226 iso_pu_bacteria 2935793552 2935799780 424
227 iso_pu_bacteria 2935819856 2935823909 424
228 iso_pu_bacteria 2935847175 2935852944 424
229 iso_pu_bacteria 2935908558 2935913402 424
230 iso_pu_bacteria 2935916978 2935923299 424
231 iso_pu_bacteria 2935926038 2935931281 424
232 iso_pu_bacteria 2935934488 2935935563 424
233 iso_pu_bacteria 2935942939 2935947129 424
234 iso_pu_bacteria 2935951376 2935953776 424
235 iso_pu_bacteria 2935967501 2935968802 424
236 iso_pu_bacteria 2935975950 2935979452 424
237 iso_pu_bacteria 2935984226 2935985964 424
238 iso_pu_bacteria 2936011229 2936013187 424
239 iso_pu_bacteria 2936019824 2936021726 424
240 iso_pu_bacteria 2936028420 2936030480 424
241 iso_pu_bacteria 2936046547 2936047920 424
242 iso_pu_bacteria 2936055302 2936057921 424
243 iso_pu_bacteria 3005483717 3005485124 424
244 iso_pu_bacteria 3005587118 3005587450 424
245 iso_pu_bacteria 8016530956 8016536150 424
246 iso_pu_bacteria 8016539877 8016540435 424
247 iso_pu_bacteria 8016548790 8016552806 424
248 iso_pu_bacteria 8016557553 8016561185 424
249 iso_pu_bacteria 8016575299 8016578595 424
250 iso_pu_bacteria 8016595262 8016599043 424
251 iso_pu_bacteria 8016603502 8016612013 424
252 iso_pu_bacteria 8016613128 8016621792 424
253 iso_pu_bacteria 8016622563 8016628057 424
254 iso_pu_bacteria 8016630954 8016637718 424
255 iso_pu_bacteria 8017057580 8017067116 424
256 iso_pu_bacteria 8019530166 8019535875 424
257 iso_pu_bacteria 8019538911 8019543603 424
258 iso_pu_bacteria 8019547302 8019555169 424
259 iso_pu_bacteria 8019576017 8019586085 424
260 iso_pu_bacteria 8019586578 8019586824 424
261 iso_pu_bacteria 8019597564 8019607764 424
262 iso_pu_bacteria 8019619141 8019625540 424
263 iso_pu_bacteria 8019629233 8019636744 424
264 iso_pu_bacteria 8019638758 8019642877 424
265 iso_pu_bacteria 8019659431 8019664550 424
266 iso_pu_bacteria 8019668869 8019674135 424
267 iso_pu_bacteria 8019678201 8019681984 424
268 iso_pu_bacteria 8019687851 8019694483 424
269 iso_pu_bacteria 8056681323 8056682770 424
270 iso_pu_bacteria 8056689827 8056693242 424
271 3300007265 Ga0099794_10012932 Ga0099794_100129322 425
272 3300007788 Ga0099795_10013255 Ga0099795_100132552 425
273 3300027512 Ga0209179_1012926 Ga0209179_10129261 425
274 3300021384 Ga0213876_10000986 Ga0213876_1000098617 426
275 3300037312 Ga0395899_0000003 Ga0395899_0000003_364271_365563 426
276 3300037853 Ga0436364_0157884 Ga0436364_0157884_945_2237 426
277 3300039437 Ga0436365_0736793 Ga0436365_0736793_51423_52715 426
278 3300039438 Ga0436360_0763932 Ga0436360_0763932_1134_2426 426
279 3300039447 Ga0436361_0410868 Ga0436361_0410868_194_1486 426
280 3300039447 Ga0436361_0453834 Ga0436361_0453834_12697_13989 426
281 3300039450 Ga0436363_0612561 Ga0436363_0612561_3076_4368 426
282 3300048927 Ga0496124_0225193 Ga0496124_0225193_52_1344 426
283 3300005981 Ga0081538_10017318 Ga0081538_100173184 427
284 3300005981 Ga0081538_10026450 Ga0081538_100264502 427
285 3300006852 Ga0075433_10031356 Ga0075433_100313562 427
286 3300006871 Ga0075434_100000641 Ga0075434_10000064118 427
287 3300044684 Ga0466966_0054309 Ga0466966_0054309_202_1488 427
288 3300045049 Ga0466959_0019440 Ga0466959_0019440_220_1506 427
289 3300049570 Ga0501033_0072150 Ga0501033_0072150_89_1372 427
290 3300049572 Ga0501036_0003981 Ga0501036_0003981_1582_2865 427
291 3300049574 Ga0501038_0036575 Ga0501038_0036575_672_1955 427
292 3300049575 Ga0501039_0004314 Ga0501039_0004314_495_1778 427
293 3300049576 Ga0501040_0108627 Ga0501040_0108627_580_1863 427
294 3300049577 Ga0501041_0003044 Ga0501041_0003044_2914_4197 427
295 3300049578 Ga0501042_0004805 Ga0501042_0004805_1624_2907 427
296 3300049587 Ga0501071_0014009 Ga0501071_0014009_2931_4214 427
297 3300049589 Ga0501073_0204356 Ga0501073_0204356_14_1297 427
298 3300049592 Ga0501076_0011665 Ga0501076_0011665_3646_4929 427
299 3300049593 Ga0501077_0030244 Ga0501077_0030244_219_1502 427
300 3300049742 Ga0501080_0047224 Ga0501080_0047224_179_1462 427
301 3300049743 Ga0501081_0123527 Ga0501081_0123527_391_1674 427
302 3300049824 Ga0501045_0063188 Ga0501045_0063188_237_1520 427
303 3300050512 nmdc:mga0n895_2275_c1 nmdc:mga0n895_2275_c1_10280_11563 427
304 3300050515 nmdc:mga0a205_6325_c1 nmdc:mga0a205_6325_c1_5055_6338 427
305 3300054114 Ga0501084_0050662 Ga0501084_0050662_1729_3012 427
306 3300061734 Ga0530510_0004248 Ga0530510_0004248_7797_9080 427
307 3300003693 Ga0032354_1057538 Ga0032354_10575382 428
308 3300049741 Ga0501079_0058817 Ga0501079_0058817_1389_2696 428

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04055

Radical_SAM

Radical SAM superfamily

216

369

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
6wtf-assembly1.cif.gz_A structure of radical s-adenosylmethionine methyltransferase, tsrm, from kitasatospora setae with tryptophan substrate and sam analog (aza-sam) bound 0.7889 2 378
6wte-assembly1.cif.gz_A structure of radical s-adenosylmethionine methyltransferase, tsrm, from kitasatospora setae with cobalamin and [4fe-4s] cluster bound 0.7664 2 378
5ul3-assembly1.cif.gz_A structure of cobalamin-dependent s-adenosylmethionine radical enzyme oxsb with aqua-cobalamin bound 0.7662 2 357
6wte-assembly2.cif.gz_B structure of radical s-adenosylmethionine methyltransferase, tsrm, from kitasatospora setae with cobalamin and [4fe-4s] cluster bound 0.7659 2 378
6wtf-assembly2.cif.gz_B structure of radical s-adenosylmethionine methyltransferase, tsrm, from kitasatospora setae with tryptophan substrate and sam analog (aza-sam) bound 0.7658 2 378
ID Description Score Start End Superfamily
af_P96395_164_380_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.795 198 381 3.80.30.20
af_Q58275_166_383_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.7578 199 386 3.80.30.20
af_Q8I5E0_340_540_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.7521 269 348 3.20.20.70
af_Q57722_207_468_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.7485 198 377 3.80.30.20
af_Q58882_171_402_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.7439 199 401 3.80.30.20
ID Description Score Start End GO Terms
AF-A0A531KFH0-F1-model_v4 B12-binding domain-containing radical SAM protein 0.9861 229 384 GO:0005829
GO:0051536
AF-A0A6N1DVX5-F1-model_v4 TIGR04295 family B12-binding domain-containing radical SAM protein 0.9803 1 421 GO:0003824
GO:0005829
GO:0051536
AF-A0A531KFH0-F1-model_v4 B12-binding domain-containing radical SAM protein 0.9738 229 384 GO:0005829
GO:0051536
AF-A0A537SAE9-F1-model_v4 TIGR04295 family B12-binding domain-containing radical SAM protein 0.9728 1 339 GO:0003824
GO:0005829
GO:0051536
AF-A0A537RMN9-F1-model_v4 B12-binding domain-containing radical SAM protein 0.972 207 423 GO:0003824
GO:0005829
GO:0016020
GO:0051536

Feature Viewer

pLDDT pTM Quality
88.6 0.89 High
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Predicted Structure (AlphaFold2)

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