F399945

General Info

Members Datasets Scaffolds Average Seq Length
308 214 616 198

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2515154129|2515721805
Length 225
Sequence SGARPRPLHVVESADYAFPVTVQQSPRAANGDMGSGRRRSRKDEILEIAVGLFAARGYHGVSMDDIGAAAGVTGPALYHHFAGKEAMLVAALIPVSEGLLTGGRERAADHPDDPRAALESLIDFHVDFALAQPAVIALHLHELDRLPDQPRRRIRRLQRLYVEEWVSVLTASHPGLPDNEARVLAHAAFGLMNSTPFLGGVVDRQRRAELLRGATLAALLAPTAR

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
5 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
15 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
16 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
19 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
20 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
26 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
27 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
28 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
29 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
30 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
31 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
32 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
33 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
34 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
35 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
36 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
37 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
38 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
41 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
43 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
44 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
48 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
49 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
50 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
51 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
52 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
53 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
54 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
76 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
77 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
78 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
79 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
80 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
81 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
82 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
83 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
84 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
85 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
86 3300031889 Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Metagenome Rhizosphere
87 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
88 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
89 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
90 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
91 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
92 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
93 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
94 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
95 3300034817 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1 Metagenome Rhizosphere
96 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
97 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
98 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
99 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
100 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
101 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
102 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
103 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
104 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
105 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
106 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
107 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
108 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
109 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
110 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
111 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
112 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
113 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
114 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
115 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
116 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
117 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
118 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
119 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
120 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
121 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
122 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
123 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
124 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
127 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
129 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
135 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
136 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
137 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
138 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
139 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
142 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
143 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
144 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
145 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
146 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
147 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
148 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
149 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
150 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
151 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
152 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
153 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
154 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
155 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
156 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
157 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
158 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
159 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
160 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
161 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
162 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
163 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
164 2501939600 Micromonospora sp. L5 Isolate Unclassified
165 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
166 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
167 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
168 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
169 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
170 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
171 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
172 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
173 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
174 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
175 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
176 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
177 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
178 2855683550 Micromonospora sp. RP3T Isolate Unclassified
179 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
180 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
181 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
182 2858868258 Micromonospora sp. MH33 Isolate Unclassified
183 2858882152 Micromonospora noduli MED15 Isolate Nodule
184 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
185 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
186 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
187 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
188 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
189 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
190 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
191 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
192 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
193 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
194 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
195 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
196 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
197 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
198 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
199 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
200 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
201 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
202 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
203 2902582711 Micromonospora sp. AP08 Isolate Unclassified
204 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
205 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
206 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
207 649633069 Micromonospora sp. L5 Isolate Unclassified
208 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
209 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
210 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
211 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
212 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
213 8054734606 Micromonospora hortensis NIE111 Isolate Nodule
214 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 82.14
Metatranscriptomes 0.97
Isolates 16.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.58
Nodule 1.95
Rhizoplane 1.95
Rhizosphere 66.56
Stem 0
Stem Tuber 0
Unclassified 1.3

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10001944 3300003203 Bacteria 9762
2 Ga0070683_100000557 3300005329 Bacteria 26481
3 Ga0070683_100059441 3300005329 Bacteria 3551
4 Ga0070680_100368040 3300005336 Bacteria 1223
5 Ga0070660_100285120 3300005339 Bacteria 1352
6 Ga0070692_10206740 3300005345 Bacteria 1153
7 Ga0070668_100006041 3300005347 Bacteria 8980
8 Ga0070675_100576560 3300005354 Bacteria 1019
9 Ga0070714_101427979 3300005435 Bacteria 676
10 Ga0070700_100418468 3300005441 Bacteria 1012
11 Ga0070681_10065012 3300005458 Bacteria 3617
12 Ga0070681_10308032 3300005458 Bacteria 1493
13 Ga0070679_100234451 3300005530 Bacteria 1794
14 Ga0070684_100007875 3300005535 Bacteria 8310
15 Ga0070684_100753320 3300005535 Bacteria 909
16 Ga0070665_100212820 3300005548 Bacteria 1934
17 Ga0070664_100661976 3300005564 Bacteria 971
18 Ga0068857_100064756 3300005577 Bacteria 3250
19 Ga0068857_100133666 3300005577 Bacteria 2239
20 Ga0068857_100866975 3300005577 Bacteria 865
21 Ga0068852_100743395 3300005616 Bacteria 993
22 Ga0068859_100036306 3300005617 Bacteria 4948
23 Ga0068859_100462798 3300005617 Bacteria 1364
24 Ga0068864_100106170 3300005618 Bacteria 2497
25 Ga0068861_100073208 3300005719 Bacteria 2661
26 Ga0068870_10099721 3300005840 Bacteria 1639
27 Ga0068863_100164381 3300005841 Bacteria 2128
28 Ga0068858_101231523 3300005842 Bacteria 736
29 Ga0068860_100156089 3300005843 Bacteria 2199
30 Ga0068862_100020398 3300005844 Bacteria 5537
31 Ga0068862_100045528 3300005844 Bacteria 3744
32 Ga0081540_1000517 3300005983 Bacteria 37840
33 Ga0081539_10001196 3300005985 Bacteria 46791
34 Ga0081539_10005421 3300005985 Bacteria 13036
35 Ga0070717_10507906 3300006028 Bacteria 1090
36 Ga0075365_10003912 3300006038 Bacteria 7798
37 Ga0075365_10042245 3300006038 Bacteria 2980
38 Ga0075365_10152742 3300006038 Bacteria 1606
39 Ga0075365_10161126 3300006038 Bacteria 1563
40 Ga0075368_10006332 3300006042 Bacteria 4128
41 Ga0075368_10036049 3300006042 Bacteria 1932
42 Ga0075363_100006808 3300006048 Bacteria 5222
43 Ga0075363_100024852 3300006048 Bacteria 3049
44 Ga0075363_100139224 3300006048 Bacteria 1365
45 Ga0075363_100268098 3300006048 Bacteria 986
46 Ga0075364_10000304 3300006051 Bacteria 23997
47 Ga0075364_10020577 3300006051 Bacteria 4151
48 Ga0075364_10022223 3300006051 Bacteria 4003
49 Ga0075364_10182721 3300006051 Bacteria 1420
50 Ga0075364_10325652 3300006051 Bacteria 1046
51 Ga0075362_10024626 3300006177 Bacteria 2554
52 Ga0075362_10077496 3300006177 Bacteria 1527
53 Ga0075367_10031769 3300006178 Bacteria 3034
54 Ga0075367_10330944 3300006178 Bacteria 960
55 Ga0075367_10436359 3300006178 Bacteria 830
56 Ga0075367_10538573 3300006178 Unclassified 741
57 Ga0075370_10203305 3300006353 Bacteria 1169
58 Ga0075428_100000598 3300006844 Bacteria 36812
59 Ga0075428_100007643 3300006844 Bacteria 11980
60 Ga0075428_100170310 3300006844 Bacteria 2361
61 Ga0075430_100004049 3300006846 Bacteria 12371
62 Ga0075430_100007305 3300006846 Bacteria 9329
63 Ga0075430_100330866 3300006846 Bacteria 1259
64 Ga0075431_100004612 3300006847 Bacteria 13530
65 Ga0075431_100011144 3300006847 Bacteria 9050
66 Ga0075431_100029347 3300006847 Bacteria 5661
67 Ga0075431_100084266 3300006847 Bacteria 3282
68 Ga0075431_100120206 3300006847 Bacteria 2710
69 Ga0075431_100152563 3300006847 Bacteria 2378
70 Ga0075431_100600991 3300006847 Bacteria 1084
71 Ga0097620_100036304 3300006931 Bacteria 4948
72 Ga0097620_100462771 3300006931 Bacteria 1364
73 Ga0111539_11823587 3300009094 Bacteria 705
74 Ga0105247_10308007 3300009101 Bacteria 1101
75 Ga0114129_10000557 3300009147 Bacteria 45780
76 Ga0114129_10020083 3300009147 Bacteria 9508
77 Ga0114129_10536410 3300009147 Bacteria 1523
78 Ga0114129_11115455 3300009147 Bacteria 987
79 Ga0114129_11587111 3300009147 Bacteria 801
80 Ga0105243_10671932 3300009148 Bacteria 1006
81 Ga0105248_10448912 3300009177 Bacteria 1453
82 Ga0105246_10384949 3300011119 Bacteria 1160
83 Ga0105246_10392338 3300011119 Bacteria 1150
84 Ga0157370_10581720 3300013104 Bacteria 1026
85 Ga0157369_10109234 3300013105 Bacteria 2941
86 Ga0157378_10558314 3300013297 Bacteria 1151
87 Ga0157375_10558099 3300013308 Bacteria 1306
88 Ga0163163_10128577 3300014325 Bacteria 2572
89 Ga0163163_11057174 3300014325 Bacteria 875
90 Ga0163163_11198079 3300014325 Bacteria 822
91 Ga0157379_10083578 3300014968 Bacteria 2862
92 Ga0157379_10462549 3300014968 Bacteria 1172
93 Ga0206356_10458047 3300020070 Bacteria 1967
94 Ga0206354_10180487 3300020081 Bacteria 2243
95 Ga0206353_10443563 3300020082 Bacteria 3346
96 Ga0207643_10156039 3300025908 Bacteria 1371
97 Ga0207707_10662120 3300025912 Bacteria 879
98 Ga0207660_10418524 3300025917 Bacteria 1080
99 Ga0207657_10515773 3300025919 Bacteria 936
100 Ga0207649_10421884 3300025920 Bacteria 1002
101 Ga0207700_10109520 3300025928 Bacteria 2220
102 Ga0207664_10402129 3300025929 Bacteria 1218
103 Ga0207661_10041617 3300025944 Bacteria 3617
104 Ga0207679_10631704 3300025945 Bacteria 967
105 Ga0207667_10701402 3300025949 Bacteria 1014
106 Ga0207668_10001164 3300025972 Bacteria 15617
107 Ga0207668_10256986 3300025972 Bacteria 1422
108 Ga0207678_10382629 3300026067 Bacteria 1217
109 Ga0207641_10005373 3300026088 Bacteria 10941
110 Ga0207676_10066988 3300026095 Bacteria 2867
111 Ga0207674_10133881 3300026116 Bacteria 2441
112 Ga0207674_10503374 3300026116 Bacteria 1170
113 Ga0207674_10746970 3300026116 Bacteria 944
114 Ga0207675_100087075 3300026118 Bacteria 2933
115 Ga0207683_10486628 3300026121 Bacteria 1139
116 Ga0207698_10965982 3300026142 Bacteria 861
117 Ga0268266_10153618 3300028379 Bacteria 2077
118 Ga0268266_10164115 3300028379 Bacteria 2011
119 Ga0268265_10002195 3300028380 Bacteria 15067
120 Ga0268264_10122110 3300028381 Bacteria 2297
121 Ga0307515_10000095 3300028794 Bacteria 208513
122 Ga0307512_10089236 3300030522 Bacteria 2158
123 Ga0307512_10294495 3300030522 Bacteria 762
124 Ga0307513_10085783 3300031456 Bacteria 3230
125 Ga0307408_100190124 3300031548 Bacteria 1653
126 Ga0307408_100985928 3300031548 Bacteria 776
127 Ga0307508_10006410 3300031616 Bacteria 11064
128 Ga0307508_10042719 3300031616 Bacteria 4065
129 Ga0307514_10241014 3300031649 Bacteria 1083
130 Ga0307516_10001182 3300031730 Bacteria 36492
131 Ga0307405_10244227 3300031731 Bacteria 1332
132 Ga0307405_10722363 3300031731 Bacteria 827
133 Ga0307413_10059750 3300031824 Bacteria 2344
134 Ga0307413_10222107 3300031824 Bacteria 1381
135 Ga0307413_10908625 3300031824 Bacteria 748
136 Ga0307518_10078407 3300031838 Bacteria 2386
137 Ga0307410_10079745 3300031852 Bacteria 2295
138 Ga0307410_10376984 3300031852 Bacteria 1140
139 Ga0326468_10000567 3300031889 Bacteria 3844
140 Ga0307406_10006740 3300031901 Bacteria 6352
141 Ga0307406_10024910 3300031901 Bacteria 3577
142 Ga0307406_10089941 3300031901 Bacteria 2064
143 Ga0307406_10474825 3300031901 Bacteria 1009
144 Ga0307407_10012707 3300031903 Bacteria 4059
145 Ga0307409_100010423 3300031995 Bacteria 5780
146 Ga0307416_100228288 3300032002 Bacteria 1792
147 Ga0307416_100229863 3300032002 Bacteria 1787
148 Ga0307414_10456741 3300032004 Bacteria 1122
149 Ga0307411_10061973 3300032005 Bacteria 2493
150 Ga0307411_10280101 3300032005 Bacteria 1327
151 Ga0307415_100082494 3300032126 Bacteria 2300
152 Ga0307415_100083434 3300032126 Bacteria 2289
153 Ga0307415_100156268 3300032126 Bacteria 1762
154 Ga0307415_100230832 3300032126 Bacteria 1490
155 Ga0307415_100704464 3300032126 Bacteria 911
156 Ga0307510_10079202 3300033180 Bacteria 3206
157 Ga0373948_0025740 3300034817 Bacteria 1156
158 Ga0373950_0013646 3300034818 Bacteria 1358
159 Ga0373940_0016494 3300035088 Bacteria 1830
160 Ga0373939_0052553 3300035114 Bacteria 1270
161 Ga0373941_0012845 3300035115 Bacteria 2199
162 Ga0373943_0015407 3300035170 Bacteria 3472
163 Ga0373946_0085729 3300035171 Bacteria 1387
164 Ga0373942_0000279 3300035207 Bacteria 13829
165 Ga0373962_0016185 3300035242 Bacteria 1920
166 Ga0373931_0362432 3300035691 Bacteria 910
167 Ga0373935_0027600 3300035692 Bacteria 3510
168 Ga0395900_0004495 3300037418 Bacteria 14766
169 Ga0395900_0125177 3300037418 Bacteria 2636
170 Ga0395898_0183527 3300037466 Bacteria 1999
171 Ga0395905_0014282 3300037471 Bacteria 7586
172 Ga0395905_0115556 3300037471 Bacteria 2522
173 Ga0395901_0141524 3300038443 Bacteria 2528
174 Ga0439465_0033448 3300041413 Bacteria 1644
175 Ga0451795_1006910 3300041456 Bacteria 916
176 Ga0439463_129636 3300042016 Bacteria 653
177 Ga0439434_0026658 3300042435 Bacteria 1746
178 Ga0466957_0033508 3300044842 Bacteria 3082
179 Ga0466957_0069030 3300044842 Bacteria 2183
180 Ga0495629_0183114 3300046459 Bacteria 1451
181 Ga0495594_0002852 3300046499 Bacteria 8982
182 Ga0495668_0000907 3300046616 Bacteria 33233
183 Ga0495625_0001756 3300046660 Bacteria 25058
184 Ga0495581_0116867 3300047315 Bacteria 1551
185 Ga0495626_0000687 3300048091 Bacteria 32458
186 Ga0496104_0164545 3300048907 Bacteria 2127
187 Ga0496108_0000084 3300048911 Bacteria 101818
188 Ga0496112_0034660 3300048915 Bacteria 4912
189 Ga0496112_0490301 3300048915 Bacteria 1165
190 Ga0496112_0518780 3300048915 Bacteria 1126
191 Ga0501032_0093768 3300049569 Bacteria 1991
192 Ga0501036_0107562 3300049572 Bacteria 2358
193 Ga0501037_0030024 3300049573 Bacteria 4016
194 Ga0501038_0079713 3300049574 Bacteria 2760
195 Ga0501039_0135714 3300049575 Bacteria 1932
196 Ga0501039_0366748 3300049575 Bacteria 1131
197 Ga0501040_0821243 3300049576 Bacteria 673
198 Ga0501041_0114889 3300049577 Bacteria 1671
199 Ga0501046_0060191 3300049580 Bacteria 2972
200 Ga0501047_0059423 3300049581 Bacteria 3691
201 Ga0501048_0726858 3300049582 Unclassified 713
202 Ga0501068_0607019 3300049584 Bacteria 713
203 Ga0501074_0014424 3300049590 Bacteria 5750
204 Ga0501075_0614447 3300049591 Bacteria 829
205 Ga0501076_0313350 3300049592 Bacteria 1287
206 Ga0501079_0215478 3300049741 Bacteria 1500
207 Ga0501079_0411031 3300049741 Bacteria 1062
208 Ga0501035_0130516 3300049822 Bacteria 2191
209 Ga0501044_0148261 3300049823 Bacteria 2329
210 Ga0501045_0172075 3300049824 Bacteria 1613
211 nmdc:mga03683_103196_c1 3300050489 Bacteria 1255
212 nmdc:mga03683_113738_c1 3300050489 Bacteria 1199
213 nmdc:mga03n38_100408_c1 3300050490 Bacteria 1395
214 nmdc:mga03n38_1775_c1 3300050490 Bacteria 5645
215 nmdc:mga03n38_44471_c1 3300050490 Bacteria 1951
216 nmdc:mga03n38_5008_c1 3300050490 Bacteria 4462
217 nmdc:mga00v17_166395_c1 3300050491 Bacteria 1421
218 nmdc:mga00v17_24697_c1 3300050491 Bacteria 3488
219 nmdc:mga00v17_29062_c1 3300050491 Bacteria 3242
220 nmdc:mga00v17_79927_c1 3300050491 Bacteria 2040
221 nmdc:mga0yw44_27977_c1 3300050492 Bacteria 3237
222 nmdc:mga0yw44_448702_c1 3300050492 Unclassified 874
223 nmdc:mga0yw44_4744_c1 3300050492 Bacteria 6296
224 nmdc:mga0yw44_6638_c1 3300050492 Bacteria 5609
225 nmdc:mga06z11_21279_c1 3300050494 Bacteria 3012
226 nmdc:mga06z11_226804_c1 3300050494 Bacteria 1093
227 nmdc:mga06z11_40264_c1 3300050494 Bacteria 2331
228 nmdc:mga04h51_115488_c1 3300050495 Unclassified 994
229 nmdc:mga05p37_1070401_c1 3300050507 Bacteria 848
230 nmdc:mga05p37_30312_c1 3300050507 Bacteria 6600
231 nmdc:mga05p37_61_c1 3300050507 Bacteria 94943
232 nmdc:mga05p37_92810_c1 3300050507 Bacteria 3720
233 nmdc:mga09592_17_c1 3300050508 Bacteria 95560
234 nmdc:mga09592_673443_c1 3300050508 Bacteria 882
235 nmdc:mga0qj67_184820_c1 3300050509 Bacteria 1693
236 nmdc:mga0qj67_32_c1 3300050509 Bacteria 98555
237 nmdc:mga06r32_19359_c1 3300050510 Bacteria 6244
238 nmdc:mga06r32_236291_c1 3300050510 Bacteria 1815
239 nmdc:mga06r32_26_c1 3300050510 Bacteria 90558
240 nmdc:mga06r32_300774_c1 3300050510 Bacteria 1590
241 nmdc:mga06r32_342277_c1 3300050510 Bacteria 1480
242 nmdc:mga06r32_604367_c1 3300050510 Bacteria 1067
243 nmdc:mga06r32_615033_c1 3300050510 Bacteria 1056
244 nmdc:mga06r32_731032_c1 3300050510 Bacteria 954
245 nmdc:mga08y16_1164896_c1 3300050511 Bacteria 743
246 Ga0495619_0197983 3300053085 Bacteria 1391
247 Ga0500646_0000143 3300053090 Bacteria 21040
248 Ga0500583_0080105 3300053092 Bacteria 1576
249 Ga0500641_0155631 3300053096 Bacteria 986
250 Ga0500556_0129778 3300053104 Bacteria 987
251 Ga0500594_0015413 3300053118 Bacteria 1844
252 Ga0500588_0000517 3300053146 Bacteria 6189
253 Ga0500600_0138334 3300053149 Bacteria 1229
254 Ga0500633_0178525 3300053160 Bacteria 796
255 Ga0530510_0073100 3300061734 Bacteria 2489
256 Ga0530510_0080270 3300061734 Bacteria 2374
257 2515721805 2515154129 Bacteria 5584369
258 2501943177 2501939600 Bacteria 6907073
259 2515498035 2515154088 Bacteria 5526283
260 2515756210 2515154137 Bacteria 5711575
261 2516086835 2515154202 Bacteria 5471270
262 2516092155 2515154203 Bacteria 5458536
263 2623585849 2622736626 Bacteria 7181580
264 2676486934 2675903059 Bacteria 8644972
265 2676490969 2675903060 Bacteria 10051191
266 2753269781 2751185782 Bacteria 11227053
267 2772642778 2772190715 Bacteria 6959372
268 2831940949 2831935698 Bacteria 5963223
269 2832005279 2832004796 Bacteria 6538017
270 2855674367 2855670206 Bacteria 7120389
271 2855679710 2855676851 Bacteria 7063653
272 2855685709 2855683550 Bacteria 7134265
273 2856859729 2856858025 Bacteria 7255264
274 2857290617 2857288857 Bacteria 7189066
275 2858854633 2858848962 Bacteria 6963058
276 2858871716 2858868258 Bacteria 7683772
277 2858885031 2858882152 Bacteria 7230291
278 2858891829 2858888857 Bacteria 7060307
279 2858899606 2858895516 Bacteria 7378898
280 2858904853 2858902515 Bacteria 7086037
281 2866069594 2866065130 Bacteria 6518152
282 2867304644 2867302475 Bacteria 7087181
283 2867318951 2867312974 Bacteria 7058875
284 2867323899 2867319477 Bacteria 7069771
285 2867509043 2867507094 Bacteria 6506033
286 2869049319 2869048445 Bacteria 6875584
287 2869064064 2869061728 Bacteria 7112407
288 2869072712 2869068681 Bacteria 7205615
289 2880494413 2880489317 Bacteria 7096270
290 2880497897 2880495981 Bacteria 7340502
291 2884701121 2884693830 Bacteria 11273186
292 2887484384 2887478801 Bacteria 8972725
293 2891403524 2891395885 Bacteria 9251614
294 2891556739 2891554331 Bacteria 8812224
295 2895436144 2895427314 Bacteria 13147766
296 2895448824 2895442618 Bacteria 11027144
297 2902588587 2902582711 Bacteria 6187705
298 2929219957 2929219909 Bacteria 6984360
299 2929226472 2929226422 Bacteria 7248583
300 2996225907 2996221748 Bacteria 6799777
301 649810219 649633069 Bacteria 6962533
302 8003836271 8003830390 Bacteria 6541657
303 8003860153 8003856774 Bacteria 7675274
304 8003873732 8003870546 Bacteria 7396674
305 8054710546 8054704163 Bacteria 7247792
306 8054729179 8054727385 Bacteria 7558670
307 8054740534 8054734606 Bacteria 6947278
308 8055415131 8055412473 Bacteria 6257500
309 JGI25406J46586_10001944
310 Ga0070683_100000557
311 Ga0070683_100059441
312 Ga0070680_100368040
313 Ga0070660_100285120
314 Ga0070692_10206740
315 Ga0070668_100006041
316 Ga0070675_100576560
317 Ga0070714_101427979
318 Ga0070700_100418468
319 Ga0070681_10065012
320 Ga0070681_10308032
321 Ga0070679_100234451
322 Ga0070684_100007875
323 Ga0070684_100753320
324 Ga0070665_100212820
325 Ga0070664_100661976
326 Ga0068857_100064756
327 Ga0068857_100133666
328 Ga0068857_100866975
329 Ga0068852_100743395
330 Ga0068859_100036306
331 Ga0068859_100462798
332 Ga0068864_100106170
333 Ga0068861_100073208
334 Ga0068870_10099721
335 Ga0068863_100164381
336 Ga0068858_101231523
337 Ga0068860_100156089
338 Ga0068862_100020398
339 Ga0068862_100045528
340 Ga0081540_1000517
341 Ga0081539_10001196
342 Ga0081539_10005421
343 Ga0070717_10507906
344 Ga0075365_10003912
345 Ga0075365_10042245
346 Ga0075365_10152742
347 Ga0075365_10161126
348 Ga0075368_10006332
349 Ga0075368_10036049
350 Ga0075363_100006808
351 Ga0075363_100024852
352 Ga0075363_100139224
353 Ga0075363_100268098
354 Ga0075364_10000304
355 Ga0075364_10020577
356 Ga0075364_10022223
357 Ga0075364_10182721
358 Ga0075364_10325652
359 Ga0075362_10024626
360 Ga0075362_10077496
361 Ga0075367_10031769
362 Ga0075367_10330944
363 Ga0075367_10436359
364 Ga0075367_10538573
365 Ga0075370_10203305
366 Ga0075428_100000598
367 Ga0075428_100007643
368 Ga0075428_100170310
369 Ga0075430_100004049
370 Ga0075430_100007305
371 Ga0075430_100330866
372 Ga0075431_100004612
373 Ga0075431_100011144
374 Ga0075431_100029347
375 Ga0075431_100084266
376 Ga0075431_100120206
377 Ga0075431_100152563
378 Ga0075431_100600991
379 Ga0097620_100036304
380 Ga0097620_100462771
381 Ga0111539_11823587
382 Ga0105247_10308007
383 Ga0114129_10000557
384 Ga0114129_10020083
385 Ga0114129_10536410
386 Ga0114129_11115455
387 Ga0114129_11587111
388 Ga0105243_10671932
389 Ga0105248_10448912
390 Ga0105246_10384949
391 Ga0105246_10392338
392 Ga0157370_10581720
393 Ga0157369_10109234
394 Ga0157378_10558314
395 Ga0157375_10558099
396 Ga0163163_10128577
397 Ga0163163_11057174
398 Ga0163163_11198079
399 Ga0157379_10083578
400 Ga0157379_10462549
401 Ga0206356_10458047
402 Ga0206354_10180487
403 Ga0206353_10443563
404 Ga0207643_10156039
405 Ga0207707_10662120
406 Ga0207660_10418524
407 Ga0207657_10515773
408 Ga0207649_10421884
409 Ga0207700_10109520
410 Ga0207664_10402129
411 Ga0207661_10041617
412 Ga0207679_10631704
413 Ga0207667_10701402
414 Ga0207668_10001164
415 Ga0207668_10256986
416 Ga0207678_10382629
417 Ga0207641_10005373
418 Ga0207676_10066988
419 Ga0207674_10133881
420 Ga0207674_10503374
421 Ga0207674_10746970
422 Ga0207675_100087075
423 Ga0207683_10486628
424 Ga0207698_10965982
425 Ga0268266_10153618
426 Ga0268266_10164115
427 Ga0268265_10002195
428 Ga0268264_10122110
429 Ga0307515_10000095
430 Ga0307512_10089236
431 Ga0307512_10294495
432 Ga0307513_10085783
433 Ga0307408_100190124
434 Ga0307408_100985928
435 Ga0307508_10006410
436 Ga0307508_10042719
437 Ga0307514_10241014
438 Ga0307516_10001182
439 Ga0307405_10244227
440 Ga0307405_10722363
441 Ga0307413_10059750
442 Ga0307413_10222107
443 Ga0307413_10908625
444 Ga0307518_10078407
445 Ga0307410_10079745
446 Ga0307410_10376984
447 Ga0326468_10000567
448 Ga0307406_10006740
449 Ga0307406_10024910
450 Ga0307406_10089941
451 Ga0307406_10474825
452 Ga0307407_10012707
453 Ga0307409_100010423
454 Ga0307416_100228288
455 Ga0307416_100229863
456 Ga0307414_10456741
457 Ga0307411_10061973
458 Ga0307411_10280101
459 Ga0307415_100082494
460 Ga0307415_100083434
461 Ga0307415_100156268
462 Ga0307415_100230832
463 Ga0307415_100704464
464 Ga0307510_10079202
465 Ga0373948_0025740
466 Ga0373950_0013646
467 Ga0373940_0016494
468 Ga0373939_0052553
469 Ga0373941_0012845
470 Ga0373943_0015407
471 Ga0373946_0085729
472 Ga0373942_0000279
473 Ga0373962_0016185
474 Ga0373931_0362432
475 Ga0373935_0027600
476 Ga0395900_0004495
477 Ga0395900_0125177
478 Ga0395898_0183527
479 Ga0395905_0014282
480 Ga0395905_0115556
481 Ga0395901_0141524
482 Ga0439465_0033448
483 Ga0451795_1006910
484 Ga0439463_129636
485 Ga0439434_0026658
486 Ga0466957_0033508
487 Ga0466957_0069030
488 Ga0495629_0183114
489 Ga0495594_0002852
490 Ga0495668_0000907
491 Ga0495625_0001756
492 Ga0495581_0116867
493 Ga0495626_0000687
494 Ga0496104_0164545
495 Ga0496108_0000084
496 Ga0496112_0034660
497 Ga0496112_0490301
498 Ga0496112_0518780
499 Ga0501032_0093768
500 Ga0501036_0107562
501 Ga0501037_0030024
502 Ga0501038_0079713
503 Ga0501039_0135714
504 Ga0501039_0366748
505 Ga0501040_0821243
506 Ga0501041_0114889
507 Ga0501046_0060191
508 Ga0501047_0059423
509 Ga0501048_0726858
510 Ga0501068_0607019
511 Ga0501074_0014424
512 Ga0501075_0614447
513 Ga0501076_0313350
514 Ga0501079_0215478
515 Ga0501079_0411031
516 Ga0501035_0130516
517 Ga0501044_0148261
518 Ga0501045_0172075
519 nmdc:mga03683_103196_c1
520 nmdc:mga03683_113738_c1
521 nmdc:mga03n38_100408_c1
522 nmdc:mga03n38_1775_c1
523 nmdc:mga03n38_44471_c1
524 nmdc:mga03n38_5008_c1
525 nmdc:mga00v17_166395_c1
526 nmdc:mga00v17_24697_c1
527 nmdc:mga00v17_29062_c1
528 nmdc:mga00v17_79927_c1
529 nmdc:mga0yw44_27977_c1
530 nmdc:mga0yw44_448702_c1
531 nmdc:mga0yw44_4744_c1
532 nmdc:mga0yw44_6638_c1
533 nmdc:mga06z11_21279_c1
534 nmdc:mga06z11_226804_c1
535 nmdc:mga06z11_40264_c1
536 nmdc:mga04h51_115488_c1
537 nmdc:mga05p37_1070401_c1
538 nmdc:mga05p37_30312_c1
539 nmdc:mga05p37_61_c1
540 nmdc:mga05p37_92810_c1
541 nmdc:mga09592_17_c1
542 nmdc:mga09592_673443_c1
543 nmdc:mga0qj67_184820_c1
544 nmdc:mga0qj67_32_c1
545 nmdc:mga06r32_19359_c1
546 nmdc:mga06r32_236291_c1
547 nmdc:mga06r32_26_c1
548 nmdc:mga06r32_300774_c1
549 nmdc:mga06r32_342277_c1
550 nmdc:mga06r32_604367_c1
551 nmdc:mga06r32_615033_c1
552 nmdc:mga06r32_731032_c1
553 nmdc:mga08y16_1164896_c1
554 Ga0495619_0197983
555 Ga0500646_0000143
556 Ga0500583_0080105
557 Ga0500641_0155631
558 Ga0500556_0129778
559 Ga0500594_0015413
560 Ga0500588_0000517
561 Ga0500600_0138334
562 Ga0500633_0178525
563 Ga0530510_0073100
564 Ga0530510_0080270
565 2515721805
566 2501943177
567 2515498035
568 2515756210
569 2516086835
570 2516092155
571 2623585849
572 2676486934
573 2676490969
574 2753269781
575 2772642778
576 2831940949
577 2832005279
578 2855674367
579 2855679710
580 2855685709
581 2856859729
582 2857290617
583 2858854633
584 2858871716
585 2858885031
586 2858891829
587 2858899606
588 2858904853
589 2866069594
590 2867304644
591 2867318951
592 2867323899
593 2867509043
594 2869049319
595 2869064064
596 2869072712
597 2880494413
598 2880497897
599 2884701121
600 2887484384
601 2891403524
602 2891556739
603 2895436144
604 2895448824
605 2902588587
606 2929219957
607 2929226472
608 2996225907
609 649810219
610 8003836271
611 8003860153
612 8003873732
613 8054710546
614 8054729179
615 8054740534
616 8055415131

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

45

91

0.97

PF17932

TetR_C_24

Tetracyclin repressor-like, C-terminal domain

111

197

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
6yj2-assembly2.cif.gz_C structural and dna binding studies of the transcriptional repressor rv2506 (bkar) from mycobacterium tuberculosis supports a role in l-leucine catabolism 0.948 31 206
6yj2-assembly1.cif.gz_A structural and dna binding studies of the transcriptional repressor rv2506 (bkar) from mycobacterium tuberculosis supports a role in l-leucine catabolism 0.9422 27 206
6yl2-assembly1.cif.gz_A structural and dna binding studies of the transcriptional repressor rv2506 (bkar) from mycobacterium tuberculosis supports a role in l-leucine catabolism 0.9397 28 206
6yj2-assembly1.cif.gz_A structural and dna binding studies of the transcriptional repressor rv2506 (bkar) from mycobacterium tuberculosis supports a role in l-leucine catabolism 0.9081 27 206
6yj2-assembly2.cif.gz_C structural and dna binding studies of the transcriptional repressor rv2506 (bkar) from mycobacterium tuberculosis supports a role in l-leucine catabolism 0.8986 31 206
ID Description Score Start End Superfamily
2ibdA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9636 28 68 1.10.10.60
5k7fB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9615 27 68 1.10.10.60
5k7zD01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9615 29 68 1.10.10.60
4mo7A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9497 26 68 1.10.10.60
af_O06169_67_215_1.10.357.10 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;Tetracycline Repressor, domain 2 0.941 70 206 1.10.357.10
ID Description Score Start End GO Terms
AF-A0A1A9ABB0-F1-model_v4 Transcriptional regulator, TetR family 0.9953 25 209 GO:0000976
GO:0003700
AF-A0A1I2KL29-F1-model_v4 Transcriptional regulator, TetR family 0.992 38 209 GO:0000976
GO:0003700
AF-A4X0V9-F1-model_v4 Transcriptional regulator, TetR family 0.989 20 208 GO:0000976
GO:0003700
AF-A0A1I2KL29-F1-model_v4 Transcriptional regulator, TetR family 0.9806 38 209 GO:0000976
GO:0003700
AF-A0A7W0YYU7-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9798 25 209 GO:0000976
GO:0003700

Map