F398356

General Info

Members Datasets Scaffolds Average Seq Length
305 150 610 470

Family's Representative Sequence

Representative Sequence 3300049743|Ga0501081_0056031|Ga0501081_0056031_519_2021
Length 500
Sequence VARTATIPPTTTIGGDPLTVGERARVEELHRVDDVVWELPATARADMRVPARVFADRELVEAIADDRSLEQLQNVATLPGIVDAALGMPDIHQGYGFPVGGVAAIDSATGVISPGGVGYDINCGVRLLALPLSVDELGARREGLVHEISRAVPAGTGKRRRDSFRGEELERVLRDGPRYLVQHGIGTADDLEHTESEGCLEGADPAAVSERARARGNGQLGTIGAGNHFVELQRVDEILDEATAEAFGLREGQATVLIHSGSRGLGHQVCTDFVKLMETVQAGYGIELPDRQLACAPLSSPEGRAYLAAMAAAANFAFANRHVMAHEVREAARRILGEAAADGTRQVYDVAHNVAKTERHGERELCVHRKGATRAFPAGSAEIPAAYRSVGQPVFIPGSMGTASFVLAGEAGSLEHSFGTTCHGAGRRMSRTEARRRVTGAELRRELEAGGIVVRCPSNRGLAEEAPTAYKDVERVVEVVERAGLARRVARLRPVGVVKG

Samples

Sample ID Description Type Environment
1 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
15 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
19 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
20 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
23 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
24 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
25 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
26 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
27 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
28 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
29 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
30 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
34 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
37 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
38 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
39 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
40 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
41 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
65 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
67 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
68 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
69 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
70 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
71 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
72 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
73 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
74 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
75 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
76 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
77 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
78 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
79 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
80 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
81 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
82 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
83 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
84 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
85 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
86 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
87 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
88 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
89 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
90 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
91 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
92 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
93 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
94 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
95 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
96 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
97 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
98 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
99 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
100 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
101 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
102 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
103 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
104 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
105 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
106 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
107 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
108 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
109 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
110 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
111 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
122 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
123 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
124 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
125 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
126 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
127 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
128 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
129 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
130 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
131 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
132 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
133 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
134 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
135 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
138 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
139 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
140 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
141 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
142 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
143 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
144 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
145 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
146 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
147 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
148 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
149 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
150 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 3.61
Rhizosphere 89.51
Stem 0
Stem Tuber 0
Unclassified 1.64

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501081_0056031 3300049743 Bacteria 2723
2 JGI25407J50210_10000098 3300003373 Bacteria 11942
3 Ga0065707_10085597 3300005295 Bacteria 6029
4 Ga0070689_100000234 3300005340 Bacteria 32485
5 Ga0070671_100119443 3300005355 Bacteria 2218
6 Ga0070714_100094650 3300005435 Archaea 2622
7 Ga0070708_100267019 3300005445 Bacteria 1609
8 Ga0070681_10169826 3300005458 Bacteria 2103
9 Ga0070685_10019082 3300005466 Bacteria 3696
10 Ga0070706_100012933 3300005467 Bacteria 7725
11 Ga0070707_100014204 3300005468 Bacteria 7464
12 Ga0070707_100143450 3300005468 Bacteria 2324
13 Ga0070698_100174325 3300005471 Bacteria 2091
14 Ga0070698_100239297 3300005471 Archaea 1748
15 Ga0070699_100071371 3300005518 Bacteria 3020
16 Ga0070686_100023907 3300005544 Bacteria 3658
17 Ga0070693_100064470 3300005547 Bacteria 2139
18 Ga0068855_100095558 3300005563 Bacteria 3425
19 Ga0068857_100013159 3300005577 Bacteria 7210
20 Ga0068854_100045911 3300005578 Bacteria 3108
21 Ga0068864_100203696 3300005618 Bacteria 1819
22 Ga0068870_10001891 3300005840 Bacteria 8634
23 Ga0068858_100001034 3300005842 Bacteria 28755
24 Ga0068858_100119193 3300005842 Bacteria 2467
25 Ga0068860_100026404 3300005843 Bacteria 5599
26 Ga0068862_100073404 3300005844 Bacteria 2957
27 Ga0081455_10013793 3300005937 Bacteria 7953
28 Ga0081455_10056452 3300005937 Bacteria 3333
29 Ga0081538_10000396 3300005981 Bacteria 49639
30 Ga0081538_10001296 3300005981 Bacteria 25915
31 Ga0081538_10003909 3300005981 Bacteria 13897
32 Ga0081538_10004761 3300005981 Bacteria 12410
33 Ga0081538_10008389 3300005981 Bacteria 8781
34 Ga0081538_10009004 3300005981 Bacteria 8383
35 Ga0081538_10009816 3300005981 Bacteria 7920
36 Ga0081538_10017747 3300005981 Bacteria 5384
37 Ga0081538_10047583 3300005981 Bacteria 2628
38 Ga0081538_10058620 3300005981 Bacteria 2231
39 Ga0081538_10061271 3300005981 Bacteria 2155
40 Ga0070717_10210051 3300006028 Bacteria 1708
41 Ga0075431_100007948 3300006847 Bacteria 10573
42 Ga0075431_100219090 3300006847 Bacteria 1942
43 Ga0075433_10045697 3300006852 Bacteria 3807
44 Ga0075436_100001048 3300006914 Bacteria 18673
45 Ga0075435_100032508 3300007076 Bacteria 4121
46 Ga0075435_100115921 3300007076 Bacteria 2231
47 Ga0105245_10000771 3300009098 Bacteria 29002
48 Ga0114129_10399010 3300009147 Bacteria 1813
49 Ga0105241_10174640 3300009174 Archaea 1777
50 Ga0105249_10070720 3300009553 Bacteria 3222
51 Ga0105249_10080134 3300009553 Bacteria 3032
52 Ga0157370_10014747 3300013104 Bacteria 7981
53 Ga0157379_10120802 3300014968 Bacteria 2356
54 Ga0157379_10188774 3300014968 Bacteria 1863
55 Ga0157376_10206445 3300014969 Bacteria 1811
56 Ga0163161_10050988 3300017792 Bacteria 2996
57 Ga0213874_10000807 3300021377 Bacteria 6386
58 Ga0213876_10003014 3300021384 Bacteria 9743
59 Ga0213876_10014989 3300021384 Bacteria 4108
60 Ga0213876_10046778 3300021384 Bacteria 2288
61 Ga0207642_10023131 3300025899 Bacteria 2478
62 Ga0207643_10001645 3300025908 Bacteria 12581
63 Ga0207643_10001831 3300025908 Bacteria 11783
64 Ga0207695_10267353 3300025913 Bacteria 1606
65 Ga0207657_10100384 3300025919 Bacteria 2403
66 Ga0207650_10003396 3300025925 Bacteria 10953
67 Ga0207687_10000525 3300025927 Bacteria 25685
68 Ga0207687_10057005 3300025927 Bacteria 2743
69 Ga0207664_10049245 3300025929 Bacteria 3316
70 Ga0207706_10133390 3300025933 Bacteria 2184
71 Ga0207709_10057329 3300025935 Bacteria 2415
72 Ga0207670_10002074 3300025936 Bacteria 10483
73 Ga0207704_10042604 3300025938 Bacteria 2673
74 Ga0207691_10049389 3300025940 Bacteria 3855
75 Ga0207667_10097410 3300025949 Bacteria 3036
76 Ga0207712_10050232 3300025961 Bacteria 2911
77 Ga0207712_10120071 3300025961 Bacteria 1987
78 Ga0207668_10074426 3300025972 Bacteria 2438
79 Ga0207677_10048263 3300026023 Bacteria 2866
80 Ga0207703_10000081 3300026035 Bacteria 111679
81 Ga0207703_10166386 3300026035 Bacteria 1935
82 Ga0207639_10183908 3300026041 Bacteria 1780
83 Ga0207708_10217737 3300026075 Archaea 1529
84 Ga0207676_10166894 3300026095 Bacteria 1914
85 Ga0207674_10073039 3300026116 Bacteria 3445
86 Ga0207674_10087731 3300026116 Bacteria 3104
87 Ga0207683_10032610 3300026121 Bacteria 4525
88 Ga0207698_10064069 3300026142 Bacteria 2880
89 Ga0207428_10085656 3300027907 Bacteria 2453
90 Ga0268265_10140016 3300028380 Bacteria 2024
91 Ga0265339_10000243 3300031249 Bacteria 43774
92 Ga0265331_10004067 3300031250 Bacteria 9201
93 Ga0265316_10141035 3300031344 Bacteria 1810
94 Ga0265313_10000887 3300031595 Bacteria 30177
95 Ga0265314_10000704 3300031711 Bacteria 40501
96 Ga0265342_10057756 3300031712 Bacteria 2295
97 Ga0307410_10059024 3300031852 Bacteria 2618
98 Ga0307409_100069271 3300031995 Bacteria 2794
99 Ga0373939_0000443 3300035114 Bacteria 10461
100 Ga0373941_0003626 3300035115 Bacteria 3517
101 Ga0316574_0081456 3300035398 Bacteria 2056
102 Ga0373937_0007915 3300036401 Bacteria 9211
103 Ga0316584_0013388 3300036712 Bacteria 5805
104 Ga0395899_0005744 3300037312 Bacteria 9631
105 Ga0395899_0008088 3300037312 Bacteria 8099
106 Ga0395899_0015259 3300037312 Bacteria 5856
107 Ga0395899_0015632 3300037312 Bacteria 5787
108 Ga0395899_0038468 3300037312 Bacteria 3583
109 Ga0395899_0058844 3300037312 Archaea 2833
110 Ga0395899_0067803 3300037312 Bacteria 2618
111 Ga0395899_0128505 3300037312 Archaea 1811
112 Ga0395900_0002342 3300037418 Bacteria 20977
113 Ga0395900_0009673 3300037418 Bacteria 9880
114 Ga0395900_0010099 3300037418 Bacteria 9656
115 Ga0395900_0023587 3300037418 Bacteria 6294
116 Ga0395900_0040503 3300037418 Bacteria 4801
117 Ga0395900_0058882 3300037418 Bacteria 3955
118 Ga0395900_0060533 3300037418 Bacteria 3896
119 Ga0395900_0130604 3300037418 Bacteria 2574
120 Ga0395898_0016594 3300037466 Bacteria 7528
121 Ga0395898_0017419 3300037466 Bacteria 7338
122 Ga0395898_0025241 3300037466 Bacteria 5992
123 Ga0395898_0032724 3300037466 Bacteria 5191
124 Ga0395898_0033533 3300037466 Bacteria 5123
125 Ga0395898_0046851 3300037466 Bacteria 4246
126 Ga0395898_0050824 3300037466 Archaea 4056
127 Ga0395898_0110887 3300037466 Unclassified 2630
128 Ga0395898_0134397 3300037466 Bacteria 2368
129 Ga0395905_0016375 3300037471 Bacteria 7043
130 Ga0395905_0023426 3300037471 Bacteria 5834
131 Ga0395905_0033039 3300037471 Bacteria 4864
132 Ga0395905_0034062 3300037471 Bacteria 4782
133 Ga0395905_0056934 3300037471 Bacteria 3656
134 Ga0395905_0118899 3300037471 Bacteria 2484
135 Ga0395905_0123324 3300037471 Archaea 2436
136 Ga0395905_0125370 3300037471 Unclassified 2415
137 Ga0395905_0168645 3300037471 Bacteria 2056
138 Ga0436364_0193121 3300037853 Bacteria 34052
139 Ga0436364_0239369 3300037853 Bacteria 6757
140 Ga0436364_0705438 3300037853 Bacteria 4893
141 Ga0436364_1072707 3300037853 Bacteria 7014
142 Ga0395901_0001150 3300038443 Bacteria 28057
143 Ga0395901_0004154 3300038443 Bacteria 14608
144 Ga0395901_0005193 3300038443 Bacteria 13144
145 Ga0395901_0009209 3300038443 Bacteria 10002
146 Ga0395901_0015353 3300038443 Bacteria 7793
147 Ga0395901_0015898 3300038443 Bacteria 7668
148 Ga0395901_0020725 3300038443 Bacteria 6729
149 Ga0395901_0024173 3300038443 Bacteria 6234
150 Ga0395901_0030595 3300038443 Bacteria 5547
151 Ga0395901_0035264 3300038443 Bacteria 5168
152 Ga0395901_0051691 3300038443 Bacteria 4273
153 Ga0395901_0199395 3300038443 Bacteria 2098
154 Ga0436365_0153338 3300039437 Bacteria 2770
155 Ga0436365_0184904 3300039437 Bacteria 12539
156 Ga0436365_0263516 3300039437 Bacteria 8106
157 Ga0436365_0687882 3300039437 Bacteria 8579
158 Ga0436365_0982247 3300039437 Bacteria 8833
159 Ga0436365_1143823 3300039437 Bacteria 6699
160 Ga0436365_1751084 3300039437 Bacteria 2077
161 Ga0436365_1801749 3300039437 Bacteria 7672
162 Ga0436365_1937233 3300039437 Unclassified 3510
163 Ga0436363_0230425 3300039450 Bacteria 32869
164 Ga0436363_0870793 3300039450 Bacteria 4068
165 Ga0436363_1329112 3300039450 Bacteria 4688
166 Ga0436363_1371974 3300039450 Bacteria 12908
167 Ga0466969_0024517 3300044656 Bacteria 3103
168 Ga0466965_0024476 3300044683 Bacteria 2921
169 Ga0466961_0006066 3300044693 Bacteria 7662
170 Ga0466963_0095196 3300044694 Bacteria 2032
171 Ga0466963_0113245 3300044694 Bacteria 1863
172 Ga0466971_0004027 3300044719 Bacteria 6322
173 Ga0466968_0026815 3300044735 Bacteria 2368
174 Ga0466957_0065593 3300044842 Bacteria 2236
175 Ga0466960_0037892 3300044901 Bacteria 2264
176 Ga0466959_0151178 3300045049 Bacteria 1636
177 Ga0466958_0000233 3300045836 Bacteria 21201
178 Ga0466958_0011383 3300045836 Bacteria 5010
179 Ga0466958_0016323 3300045836 Bacteria 4274
180 Ga0466958_0068144 3300045836 Bacteria 2175
181 Ga0466967_0012141 3300045976 Bacteria 6570
182 Ga0466967_0045013 3300045976 Bacteria 3833
183 Ga0466967_0049641 3300045976 Bacteria 3670
184 Ga0495594_0034755 3300046499 Unclassified 2743
185 Ga0495667_0000116 3300046559 Bacteria 57861
186 Ga0495623_0002149 3300046679 Bacteria 13167
187 Ga0495602_0036417 3300048088 Bacteria 4580
188 Ga0495602_0127465 3300048088 Bacteria 2036
189 Ga0496100_0019262 3300048903 Bacteria 4067
190 Ga0496102_0039373 3300048905 Bacteria 4271
191 Ga0496104_0000358 3300048907 Bacteria 40736
192 Ga0496105_0038589 3300048908 Bacteria 3935
193 Ga0496106_0015511 3300048909 Bacteria 5637
194 Ga0496106_0154032 3300048909 Bacteria 1814
195 Ga0496107_0009651 3300048910 Bacteria 6693
196 Ga0496109_0121883 3300048912 Bacteria 2429
197 Ga0496114_0059170 3300048917 Bacteria 3201
198 Ga0496114_0129339 3300048917 Bacteria 2179
199 Ga0496115_0015905 3300048918 Bacteria 5718
200 Ga0501031_0016455 3300049568 Bacteria 4804
201 Ga0501031_0062726 3300049568 Bacteria 2422
202 Ga0501031_0089664 3300049568 Bacteria 2005
203 Ga0501033_0038174 3300049570 Bacteria 3593
204 Ga0501033_0090169 3300049570 Bacteria 2243
205 Ga0501034_0022528 3300049571 Bacteria 6419
206 Ga0501034_0107940 3300049571 Bacteria 2775
207 Ga0501036_0025354 3300049572 Bacteria 5002
208 Ga0501036_0077882 3300049572 Bacteria 2805
209 Ga0501036_0124678 3300049572 Bacteria 2175
210 Ga0501036_0147016 3300049572 Bacteria 1988
211 Ga0501039_0038163 3300049575 Bacteria 3711
212 Ga0501039_0063513 3300049575 Unclassified 2861
213 Ga0501039_0212983 3300049575 Bacteria 1519
214 Ga0501040_0101515 3300049576 Archaea 2007
215 Ga0501040_0176111 3300049576 Bacteria 1515
216 Ga0501041_0023595 3300049577 Bacteria 3689
217 Ga0501042_0005689 3300049578 Bacteria 8046
218 Ga0501042_0015161 3300049578 Bacteria 5272
219 Ga0501042_0058331 3300049578 Bacteria 2755
220 Ga0501042_0100913 3300049578 Bacteria 2075
221 Ga0501042_0160167 3300049578 Bacteria 1624
222 Ga0501043_0153786 3300049579 Bacteria 1800
223 Ga0501046_0022767 3300049580 Bacteria 5159
224 Ga0501046_0149156 3300049580 Bacteria 1765
225 Ga0501046_0216157 3300049580 Bacteria 1421
226 Ga0501048_0017557 3300049582 Bacteria 5270
227 Ga0501048_0049104 3300049582 Bacteria 3008
228 Ga0501048_0084674 3300049582 Bacteria 2236
229 Ga0501067_0033821 3300049583 Bacteria 2836
230 Ga0501069_0090766 3300049585 Bacteria 1728
231 Ga0501070_0017006 3300049586 Bacteria 6102
232 Ga0501071_0023452 3300049587 Bacteria 4310
233 Ga0501071_0047007 3300049587 Bacteria 3100
234 Ga0501071_0078864 3300049587 Bacteria 2407
235 Ga0501071_0150631 3300049587 Bacteria 1735
236 Ga0501072_0005807 3300049588 Bacteria 9400
237 Ga0501072_0009543 3300049588 Bacteria 7381
238 Ga0501072_0018344 3300049588 Bacteria 5387
239 Ga0501072_0139351 3300049588 Bacteria 1934
240 Ga0501072_0183855 3300049588 Bacteria 1667
241 Ga0501073_0007822 3300049589 Bacteria 7937
242 Ga0501074_0012812 3300049590 Bacteria 6097
243 Ga0501074_0049129 3300049590 Bacteria 3046
244 Ga0501074_0057851 3300049590 Bacteria 2793
245 Ga0501074_0058576 3300049590 Bacteria 2775
246 Ga0501075_0007458 3300049591 Bacteria 7585
247 Ga0501075_0009039 3300049591 Bacteria 6955
248 Ga0501075_0027780 3300049591 Bacteria 4172
249 Ga0501075_0037871 3300049591 Bacteria 3605
250 Ga0501075_0046640 3300049591 Bacteria 3255
251 Ga0501075_0051844 3300049591 Bacteria 3085
252 Ga0501076_0001711 3300049592 Bacteria 14806
253 Ga0501076_0031329 3300049592 Bacteria 4147
254 Ga0501076_0069048 3300049592 Bacteria 2823
255 Ga0501076_0074591 3300049592 Bacteria 2718
256 Ga0501077_0026578 3300049593 Bacteria 3673
257 Ga0501079_0029707 3300049741 Bacteria 4199
258 Ga0501079_0030534 3300049741 Bacteria 4141
259 Ga0501079_0070972 3300049741 Bacteria 2690
260 Ga0501079_0077302 3300049741 Bacteria 2575
261 Ga0501079_0174881 3300049741 Bacteria 1674
262 Ga0501080_0011298 3300049742 Bacteria 8172
263 Ga0501080_0045625 3300049742 Bacteria 4080
264 Ga0501081_0028310 3300049743 Bacteria 3781
265 Ga0501081_0036561 3300049743 Bacteria 3349
266 Ga0501081_0059243 3300049743 Bacteria 2650
267 Ga0501081_0113525 3300049743 Archaea 1924
268 Ga0501081_0123857 3300049743 Bacteria 1843
269 Ga0501081_0140710 3300049743 Bacteria 1729
270 Ga0501081_0142741 3300049743 Bacteria 1716
271 Ga0501081_0185830 3300049743 Bacteria 1504
272 Ga0501083_0083744 3300049744 Bacteria 2112
273 Ga0501035_0247981 3300049822 Bacteria 1513
274 Ga0501044_0067476 3300049823 Bacteria 3645
275 Ga0501045_0026683 3300049824 Bacteria 4157
276 Ga0501045_0030833 3300049824 Bacteria 3882
277 Ga0501045_0032021 3300049824 Bacteria 3809
278 Ga0501045_0136868 3300049824 Bacteria 1821
279 Ga0501045_0152873 3300049824 Bacteria 1717
280 nmdc:mga05p37_110068_c1 3300050507 Bacteria 3389
281 nmdc:mga09592_7586_c1 3300050508 Bacteria 8823
282 nmdc:mga0qj67_67571_c1 3300050509 Bacteria 2848
283 nmdc:mga06r32_64413_c1 3300050510 Bacteria 3535
284 nmdc:mga08y16_138019_c1 3300050511 Bacteria 2535
285 nmdc:mga08y16_42413_c1 3300050511 Bacteria 4766
286 nmdc:mga0rr50_119839_c1 3300050513 Bacteria 2092
287 nmdc:mga0rr50_177118_c1 3300050513 Bacteria 1741
288 nmdc:mga0rr50_431_c1 3300050513 Bacteria 4050
289 nmdc:mga08x19_345_c1 3300050514 Bacteria 21206
290 nmdc:mga0a205_11338_c1 3300050515 Bacteria 8205
291 Ga0495655_0000197 3300053083 Bacteria 11357
292 Ga0501084_0009986 3300054114 Bacteria 7846
293 Ga0501084_0040662 3300054114 Bacteria 3890
294 Ga0501084_0084131 3300054114 Bacteria 2671
295 Ga0501082_0037596 3300060353 Bacteria 4174
296 Ga0501082_0090345 3300060353 Bacteria 2644
297 Ga0501082_0142544 3300060353 Bacteria 2080
298 Ga0501082_0165424 3300060353 Bacteria 1922
299 Ga0501082_0184448 3300060353 Bacteria 1815
300 Ga0501082_0196080 3300060353 Bacteria 1757
301 Ga0501082_0229131 3300060353 Bacteria 1617
302 Ga0466962_0056888 3300061719 Bacteria 1867
303 Ga0530510_0003115 3300061734 Bacteria 11383
304 Ga0530510_0003524 3300061734 Bacteria 10771
305 Ga0530510_0014916 3300061734 Bacteria 5486
306 Ga0501081_0056031
307 JGI25407J50210_10000098
308 Ga0065707_10085597
309 Ga0070689_100000234
310 Ga0070671_100119443
311 Ga0070714_100094650
312 Ga0070708_100267019
313 Ga0070681_10169826
314 Ga0070685_10019082
315 Ga0070706_100012933
316 Ga0070707_100014204
317 Ga0070707_100143450
318 Ga0070698_100174325
319 Ga0070698_100239297
320 Ga0070699_100071371
321 Ga0070686_100023907
322 Ga0070693_100064470
323 Ga0068855_100095558
324 Ga0068857_100013159
325 Ga0068854_100045911
326 Ga0068864_100203696
327 Ga0068870_10001891
328 Ga0068858_100001034
329 Ga0068858_100119193
330 Ga0068860_100026404
331 Ga0068862_100073404
332 Ga0081455_10013793
333 Ga0081455_10056452
334 Ga0081538_10000396
335 Ga0081538_10001296
336 Ga0081538_10003909
337 Ga0081538_10004761
338 Ga0081538_10008389
339 Ga0081538_10009004
340 Ga0081538_10009816
341 Ga0081538_10017747
342 Ga0081538_10047583
343 Ga0081538_10058620
344 Ga0081538_10061271
345 Ga0070717_10210051
346 Ga0075431_100007948
347 Ga0075431_100219090
348 Ga0075433_10045697
349 Ga0075436_100001048
350 Ga0075435_100032508
351 Ga0075435_100115921
352 Ga0105245_10000771
353 Ga0114129_10399010
354 Ga0105241_10174640
355 Ga0105249_10070720
356 Ga0105249_10080134
357 Ga0157370_10014747
358 Ga0157379_10120802
359 Ga0157379_10188774
360 Ga0157376_10206445
361 Ga0163161_10050988
362 Ga0213874_10000807
363 Ga0213876_10003014
364 Ga0213876_10014989
365 Ga0213876_10046778
366 Ga0207642_10023131
367 Ga0207643_10001645
368 Ga0207643_10001831
369 Ga0207695_10267353
370 Ga0207657_10100384
371 Ga0207650_10003396
372 Ga0207687_10000525
373 Ga0207687_10057005
374 Ga0207664_10049245
375 Ga0207706_10133390
376 Ga0207709_10057329
377 Ga0207670_10002074
378 Ga0207704_10042604
379 Ga0207691_10049389
380 Ga0207667_10097410
381 Ga0207712_10050232
382 Ga0207712_10120071
383 Ga0207668_10074426
384 Ga0207677_10048263
385 Ga0207703_10000081
386 Ga0207703_10166386
387 Ga0207639_10183908
388 Ga0207708_10217737
389 Ga0207676_10166894
390 Ga0207674_10073039
391 Ga0207674_10087731
392 Ga0207683_10032610
393 Ga0207698_10064069
394 Ga0207428_10085656
395 Ga0268265_10140016
396 Ga0265339_10000243
397 Ga0265331_10004067
398 Ga0265316_10141035
399 Ga0265313_10000887
400 Ga0265314_10000704
401 Ga0265342_10057756
402 Ga0307410_10059024
403 Ga0307409_100069271
404 Ga0373939_0000443
405 Ga0373941_0003626
406 Ga0316574_0081456
407 Ga0373937_0007915
408 Ga0316584_0013388
409 Ga0395899_0005744
410 Ga0395899_0008088
411 Ga0395899_0015259
412 Ga0395899_0015632
413 Ga0395899_0038468
414 Ga0395899_0058844
415 Ga0395899_0067803
416 Ga0395899_0128505
417 Ga0395900_0002342
418 Ga0395900_0009673
419 Ga0395900_0010099
420 Ga0395900_0023587
421 Ga0395900_0040503
422 Ga0395900_0058882
423 Ga0395900_0060533
424 Ga0395900_0130604
425 Ga0395898_0016594
426 Ga0395898_0017419
427 Ga0395898_0025241
428 Ga0395898_0032724
429 Ga0395898_0033533
430 Ga0395898_0046851
431 Ga0395898_0050824
432 Ga0395898_0110887
433 Ga0395898_0134397
434 Ga0395905_0016375
435 Ga0395905_0023426
436 Ga0395905_0033039
437 Ga0395905_0034062
438 Ga0395905_0056934
439 Ga0395905_0118899
440 Ga0395905_0123324
441 Ga0395905_0125370
442 Ga0395905_0168645
443 Ga0436364_0193121
444 Ga0436364_0239369
445 Ga0436364_0705438
446 Ga0436364_1072707
447 Ga0395901_0001150
448 Ga0395901_0004154
449 Ga0395901_0005193
450 Ga0395901_0009209
451 Ga0395901_0015353
452 Ga0395901_0015898
453 Ga0395901_0020725
454 Ga0395901_0024173
455 Ga0395901_0030595
456 Ga0395901_0035264
457 Ga0395901_0051691
458 Ga0395901_0199395
459 Ga0436365_0153338
460 Ga0436365_0184904
461 Ga0436365_0263516
462 Ga0436365_0687882
463 Ga0436365_0982247
464 Ga0436365_1143823
465 Ga0436365_1751084
466 Ga0436365_1801749
467 Ga0436365_1937233
468 Ga0436363_0230425
469 Ga0436363_0870793
470 Ga0436363_1329112
471 Ga0436363_1371974
472 Ga0466969_0024517
473 Ga0466965_0024476
474 Ga0466961_0006066
475 Ga0466963_0095196
476 Ga0466963_0113245
477 Ga0466971_0004027
478 Ga0466968_0026815
479 Ga0466957_0065593
480 Ga0466960_0037892
481 Ga0466959_0151178
482 Ga0466958_0000233
483 Ga0466958_0011383
484 Ga0466958_0016323
485 Ga0466958_0068144
486 Ga0466967_0012141
487 Ga0466967_0045013
488 Ga0466967_0049641
489 Ga0495594_0034755
490 Ga0495667_0000116
491 Ga0495623_0002149
492 Ga0495602_0036417
493 Ga0495602_0127465
494 Ga0496100_0019262
495 Ga0496102_0039373
496 Ga0496104_0000358
497 Ga0496105_0038589
498 Ga0496106_0015511
499 Ga0496106_0154032
500 Ga0496107_0009651
501 Ga0496109_0121883
502 Ga0496114_0059170
503 Ga0496114_0129339
504 Ga0496115_0015905
505 Ga0501031_0016455
506 Ga0501031_0062726
507 Ga0501031_0089664
508 Ga0501033_0038174
509 Ga0501033_0090169
510 Ga0501034_0022528
511 Ga0501034_0107940
512 Ga0501036_0025354
513 Ga0501036_0077882
514 Ga0501036_0124678
515 Ga0501036_0147016
516 Ga0501039_0038163
517 Ga0501039_0063513
518 Ga0501039_0212983
519 Ga0501040_0101515
520 Ga0501040_0176111
521 Ga0501041_0023595
522 Ga0501042_0005689
523 Ga0501042_0015161
524 Ga0501042_0058331
525 Ga0501042_0100913
526 Ga0501042_0160167
527 Ga0501043_0153786
528 Ga0501046_0022767
529 Ga0501046_0149156
530 Ga0501046_0216157
531 Ga0501048_0017557
532 Ga0501048_0049104
533 Ga0501048_0084674
534 Ga0501067_0033821
535 Ga0501069_0090766
536 Ga0501070_0017006
537 Ga0501071_0023452
538 Ga0501071_0047007
539 Ga0501071_0078864
540 Ga0501071_0150631
541 Ga0501072_0005807
542 Ga0501072_0009543
543 Ga0501072_0018344
544 Ga0501072_0139351
545 Ga0501072_0183855
546 Ga0501073_0007822
547 Ga0501074_0012812
548 Ga0501074_0049129
549 Ga0501074_0057851
550 Ga0501074_0058576
551 Ga0501075_0007458
552 Ga0501075_0009039
553 Ga0501075_0027780
554 Ga0501075_0037871
555 Ga0501075_0046640
556 Ga0501075_0051844
557 Ga0501076_0001711
558 Ga0501076_0031329
559 Ga0501076_0069048
560 Ga0501076_0074591
561 Ga0501077_0026578
562 Ga0501079_0029707
563 Ga0501079_0030534
564 Ga0501079_0070972
565 Ga0501079_0077302
566 Ga0501079_0174881
567 Ga0501080_0011298
568 Ga0501080_0045625
569 Ga0501081_0028310
570 Ga0501081_0036561
571 Ga0501081_0059243
572 Ga0501081_0113525
573 Ga0501081_0123857
574 Ga0501081_0140710
575 Ga0501081_0142741
576 Ga0501081_0185830
577 Ga0501083_0083744
578 Ga0501035_0247981
579 Ga0501044_0067476
580 Ga0501045_0026683
581 Ga0501045_0030833
582 Ga0501045_0032021
583 Ga0501045_0136868
584 Ga0501045_0152873
585 nmdc:mga05p37_110068_c1
586 nmdc:mga09592_7586_c1
587 nmdc:mga0qj67_67571_c1
588 nmdc:mga06r32_64413_c1
589 nmdc:mga08y16_138019_c1
590 nmdc:mga08y16_42413_c1
591 nmdc:mga0rr50_119839_c1
592 nmdc:mga0rr50_177118_c1
593 nmdc:mga0rr50_431_c1
594 nmdc:mga08x19_345_c1
595 nmdc:mga0a205_11338_c1
596 Ga0495655_0000197
597 Ga0501084_0009986
598 Ga0501084_0040662
599 Ga0501084_0084131
600 Ga0501082_0037596
601 Ga0501082_0090345
602 Ga0501082_0142544
603 Ga0501082_0165424
604 Ga0501082_0184448
605 Ga0501082_0196080
606 Ga0501082_0229131
607 Ga0466962_0056888
608 Ga0530510_0003115
609 Ga0530510_0003524
610 Ga0530510_0014916

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01139

RtcB

tRNA-splicing ligase RtcB

71

500

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
8dcb-assembly2.cif.gz_B rna ligase rtcb from pyrococcus horikoshii in complex with ni2+ and gtp 0.9645 2 449
8dcb-assembly2.cif.gz_B rna ligase rtcb from pyrococcus horikoshii in complex with ni2+ and gtp 0.9603 2 449
7p3b-assembly2.cif.gz_B human rna ligase rtcb in complex with gmp and co(ii) 0.9566 22 449
7p3b-assembly1.cif.gz_A human rna ligase rtcb in complex with gmp and co(ii) 0.9523 24 449
4dwr-assembly3.cif.gz_C rna ligase rtcb/mn2+ complex 0.9425 1 449
ID Description Score Start End Superfamily
af_Q99LF4_9_505_3.90.1860.10 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.9725 22 449 3.90.1860.10
af_Q58095_565_968_3.90.1860.10 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.9657 77 449 3.90.1860.10
1uc2A00 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.9479 1 449 3.90.1860.10
1uc2A00 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.9459 1 449 3.90.1860.10
2epgA00 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.9326 22 449 3.90.1860.10
ID Description Score Start End GO Terms
AF-A0A2I0NX37-F1-model_v4 tRNA-splicing ligase RtcB (EC 6.5.1.8) (3'-phosphate/5'-hydroxy nucleic acid ligase) 0.9798 144 449 GO:0003972
GO:0005525
GO:0006396
GO:0046872
GO:0170057
AF-A0A554ICJ2-F1-model_v4 tRNA-splicing ligase RtcB (EC 6.5.1.-) 0.9783 30 449 GO:0003972
GO:0005525
GO:0006396
GO:0042245
GO:0046872
GO:0170057
AF-A0A2U3CEP2-F1-model_v4 tRNA-splicing ligase RtcB (EC 6.5.1.-) 0.9779 22 449 GO:0003972
GO:0005525
GO:0006396
GO:0046872
GO:0170057
AF-A0A7R9ZCJ5-F1-model_v4 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) 0.9779 139 273 GO:0003972
GO:0005525
GO:0005634
GO:0006396
GO:0046872
GO:0072669
AF-A0A522DYH1-F1-model_v4 tRNA-splicing ligase RtcB (EC 6.5.1.8) (3'-phosphate/5'-hydroxy nucleic acid ligase) 0.9761 139 449 GO:0003972
GO:0005525
GO:0006396
GO:0046872
GO:0170057

Map