F397234

General Info

Members Datasets Scaffolds Average Seq Length
303 197 606 390

Family's Representative Sequence

Representative Sequence 3300047469|Ga0495673_0008213|Ga0495673_0008213_3368_4591
Length 407
Sequence MAALTPIREGVALKVGARKVVVLGSTGSIGVSTLDLFEQAALDVEILALTAGRNVAKLAEQALRWRPQVAVIDDETCLPELRERLAGSGIRVAAGAAALSEAAAMGADWVMSAIVGAAGLAPTLAAARTGAVIALANKESLVCAGPALLAIAREAGGSVIPVDSEHSAIFQVLQRDCIEQVSRLILTASGGPFRTWDKAAMAKATPEQAVAHPNWSMGAKISVDSATMMNKGLEMIEASYLFETPQERIDVVIHPQSVIHSLVEYADGSTLAQLGPPDMRSPISCAFSWPQRLSWPAKPLNLAAYGQLTFEEPDLDRFPSIAIAREALRLGGGAPAAMNAANEVAVAAFLDRQIGFLDIAGAVAGTLERMNGLGEIADSHGDALDSAMMTDASARRIAAEVVGQKRI

Samples

Sample ID Description Type Environment
1 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
4 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
5 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
6 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
7 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
8 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
9 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
10 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
13 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
20 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
26 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
27 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
31 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
32 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
35 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
36 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
40 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
41 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
42 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
43 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
44 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
45 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
47 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
49 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
50 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
52 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
75 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
76 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
77 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
78 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
79 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
80 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
81 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
82 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
83 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
84 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
85 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
86 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
87 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
88 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
89 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
90 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
91 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
92 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
93 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
94 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
95 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
96 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
97 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
98 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
99 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
100 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
101 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
102 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
103 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
104 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
105 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
106 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
107 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
108 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
109 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
110 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
111 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
112 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
113 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
114 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
115 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
116 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
117 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
118 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
119 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
120 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
121 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
122 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
123 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
124 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
125 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
126 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
127 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
128 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
129 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
130 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
131 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
132 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
133 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
134 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
135 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
136 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
137 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
138 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
139 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
140 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
141 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
142 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
143 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
144 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
145 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
146 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
147 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
148 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
149 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
150 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
151 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
152 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
153 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
154 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
155 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
156 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
157 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
158 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
159 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
160 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
161 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
162 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
163 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
164 3300053731 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere Metagenome Endosphere
165 2510917020 Caulobacter sp. AP07 Isolate Rhizosphere
166 2582581279 Caulobacter henricii OK261 Isolate Rhizosphere
167 2582581280 Caulobacter henricii CF287 Isolate Rhizosphere
168 2582581293 Caulobacter henricii YR570 Isolate Rhizosphere
169 2585428106 Caulobacter sp. OV484 Isolate Rhizosphere
170 2599185354 Sphingomonas sp. NFR15 Isolate Rhizoplane
171 2643221545 Caulobacter sp. Root1455 Isolate Unclassified
172 2643221552 Caulobacter sp. Root1472 Isolate Unclassified
173 2643221574 Brevundimonas sp. Root608 Isolate Unclassified
174 2643221583 Caulobacter sp. Root655 Isolate Unclassified
175 2643221584 Caulobacter sp. Root656 Isolate Unclassified
176 2643221598 Phenylobacterium sp. Root700 Isolate Unclassified
177 2643221640 Caulobacter sp. Root342 Isolate Unclassified
178 2643221642 Caulobacter sp. Root343 Isolate Unclassified
179 2643221663 Brevundimonas sp. Root1279 Isolate Unclassified
180 2643221691 Caulobacter sp. Root487D2Y Isolate Unclassified
181 2643221699 Brevundimonas sp. Root1423 Isolate Unclassified
182 2739367756 Asticcacaulis sp. CF398 Isolate Unclassified
183 2751185897 Sphingomonas panacis DCY99 Isolate Unclassified
184 2791355048 Caulobacter flavus CGMCC1 15093 Isolate Rhizosphere
185 2818991435 Caulobacter henricii 536 Isolate Unclassified
186 2818991454 Caulobacter rhizosphaerae 3260 Isolate Rhizosphere
187 2843744320 Caulobacter flavus RHGG3 Isolate Unclassified
188 2849560528 Caulobacter zeae 410 Isolate Unclassified
189 2849573788 Caulobacter endophyticus 774 Isolate Unclassified
190 2851153111 Caulobacter radicis 736 Isolate Unclassified
191 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
192 2884960567 Caulobacter sp. 602-1 Isolate Rhizosphere
193 2898329390 Caulobacter sp. 602-2 Isolate Rhizosphere
194 2928531327 Caulobacter sp. 1776 Isolate Rhizosphere
195 2928972540 Brevundimonas sp. 1080 Isolate Rhizosphere
196 2941485952 Brevundimonas faecalis 2814 Isolate Rhizosphere
197 2977240413 Brevundimonas vesicularis SORGH_AS 431 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 88.45
Metatranscriptomes 0.33
Isolates 11.22

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 23.1
Nodule 0
Rhizoplane 0.99
Rhizosphere 64.69
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495673_0008213 3300047469 Bacteria 5894
2 JGI25406J46586_10032589 3300003203 Bacteria 1935
3 JGI25153J46596_10036154 3300003215 Bacteria 1588
4 Ga0006562J51391_1044565 3300003578 Bacteria 5340
5 Ga0055536_1002268 3300003781 Bacteria 10922
6 Ga0055536_1006546 3300003781 Bacteria 5408
7 Ga0055536_1006549 3300003781 Bacteria 5406
8 Ga0055528_1008381 3300003790 Bacteria 4437
9 Ga0055530_10006183 3300003791 Bacteria 5424
10 Ga0055530_10008664 3300003791 Bacteria 4030
11 Ga0055531_10001289 3300003794 Bacteria 18883
12 Ga0055531_10003885 3300003794 Bacteria 9350
13 Ga0065165_1001772 3300005262 Bacteria 21379
14 Ga0070670_100000037 3300005331 Bacteria 156070
15 Ga0070670_100018130 3300005331 Bacteria 6040
16 Ga0070670_100059513 3300005331 Bacteria 3279
17 Ga0070668_100000745 3300005347 Bacteria 22317
18 Ga0070668_100003730 3300005347 Bacteria 11234
19 Ga0070659_100005114 3300005366 Bacteria 9411
20 Ga0070667_100000083 3300005367 Bacteria 118261
21 Ga0070667_100002362 3300005367 Bacteria 16528
22 Ga0070667_100032238 3300005367 Bacteria 4370
23 Ga0070681_10029574 3300005458 Bacteria 5501
24 Ga0070698_100037791 3300005471 Bacteria 4977
25 Ga0070698_100192792 3300005471 Bacteria 1975
26 Ga0068853_100017706 3300005539 Bacteria 5880
27 Ga0068853_100064970 3300005539 Bacteria 3166
28 Ga0070665_100000483 3300005548 Bacteria 57237
29 Ga0070665_100083324 3300005548 Bacteria 3202
30 Ga0068855_100051821 3300005563 Bacteria 4834
31 Ga0070664_100020264 3300005564 Bacteria 5476
32 Ga0068859_100000391 3300005617 Bacteria 43751
33 Ga0068859_100035948 3300005617 Bacteria 4970
34 Ga0068864_100000116 3300005618 Bacteria 79213
35 Ga0068864_100002763 3300005618 Bacteria 14478
36 Ga0068864_100024841 3300005618 Bacteria 5041
37 Ga0068864_100050995 3300005618 Bacteria 3563
38 Ga0068863_100000007 3300005841 Bacteria 257578
39 Ga0068863_100011066 3300005841 Bacteria 8750
40 Ga0068863_100043637 3300005841 Bacteria 4256
41 Ga0068858_100000031 3300005842 Bacteria 143397
42 Ga0068858_100003203 3300005842 Bacteria 16353
43 Ga0068858_100010268 3300005842 Bacteria 8881
44 Ga0068860_100000348 3300005843 Bacteria 62147
45 Ga0068860_100019770 3300005843 Bacteria 6530
46 Ga0068862_100000235 3300005844 Bacteria 61301
47 Ga0068862_100016230 3300005844 Bacteria 6197
48 Ga0068862_100035458 3300005844 Bacteria 4225
49 Ga0081539_10001263 3300005985 Bacteria 44753
50 Ga0075366_10001431 3300006195 Bacteria 11898
51 Ga0075366_10083470 3300006195 Bacteria 1909
52 Ga0097620_100000391 3300006931 Bacteria 43751
53 Ga0097620_100035948 3300006931 Bacteria 4970
54 Ga0105240_10018121 3300009093 Bacteria 9467
55 Ga0105240_10140045 3300009093 Bacteria 2893
56 Ga0105248_10008920 3300009177 Bacteria 11024
57 Ga0105248_10157280 3300009177 Bacteria 2564
58 Ga0105238_10224470 3300009551 Bacteria 1855
59 Ga0105249_10265939 3300009553 Bacteria 1706
60 Ga0105249_10266980 3300009553 Bacteria 1703
61 Ga0105239_10024722 3300010375 Bacteria 6616
62 Ga0157373_10020380 3300013100 Bacteria 4819
63 Ga0157371_10111401 3300013102 Bacteria 1943
64 Ga0157370_10003703 3300013104 Bacteria 17866
65 Ga0157370_10058742 3300013104 Bacteria 3655
66 Ga0157369_10465106 3300013105 Bacteria 1309
67 Ga0157378_10013994 3300013297 Bacteria 7022
68 Ga0163162_10005214 3300013306 Bacteria 12533
69 Ga0163162_10016992 3300013306 Bacteria 7118
70 Ga0157372_10323163 3300013307 Bacteria 1797
71 Ga0163163_10026798 3300014325 Bacteria 5513
72 Ga0163163_10109167 3300014325 Bacteria 2794
73 Ga0182008_10050907 3300014497 Bacteria 2055
74 Ga0157379_10000578 3300014968 Bacteria 29653
75 Ga0157379_10026584 3300014968 Bacteria 5151
76 Ga0213872_10009215 3300021361 Bacteria 4743
77 Ga0209565_1000332 3300025263 Bacteria 42136
78 Ga0209673_1000523 3300025273 Bacteria 62816
79 Ga0209676_1000061 3300025292 Bacteria 332674
80 Ga0209676_1000327 3300025292 Bacteria 91596
81 Ga0209676_1000409 3300025292 Bacteria 77127
82 Ga0209564_1008702 3300025295 Bacteria 4956
83 Ga0209564_1025848 3300025295 Bacteria 1960
84 Ga0209758_1002872 3300025297 Bacteria 16699
85 Ga0209758_1009102 3300025297 Bacteria 6260
86 Ga0209050_1001254 3300025298 Bacteria 29280
87 Ga0209050_1002240 3300025298 Bacteria 17254
88 Ga0209050_1021019 3300025298 Bacteria 2400
89 Ga0209256_1003815 3300025299 Bacteria 10097
90 Ga0209256_1011919 3300025299 Bacteria 3406
91 Ga0209256_1019233 3300025299 Bacteria 2184
92 Ga0209051_1000338 3300025303 Bacteria 70301
93 Ga0209257_1000178 3300025304 Bacteria 160969
94 Ga0209257_1000386 3300025304 Bacteria 88085
95 Ga0209257_1001334 3300025304 Bacteria 29951
96 Ga0209257_1009028 3300025304 Bacteria 5464
97 Ga0207710_10039176 3300025900 Bacteria 2097
98 Ga0207707_10054533 3300025912 Bacteria 3480
99 Ga0207695_10004001 3300025913 Bacteria 20304
100 Ga0207695_10097298 3300025913 Bacteria 2944
101 Ga0207660_10015410 3300025917 Bacteria 5044
102 Ga0207694_10150174 3300025924 Bacteria 1877
103 Ga0207650_10000062 3300025925 Bacteria 149776
104 Ga0207690_10006268 3300025932 Bacteria 7045
105 Ga0207711_10091576 3300025941 Bacteria 2675
106 Ga0207679_10021157 3300025945 Bacteria 4403
107 Ga0207712_10114123 3300025961 Bacteria 2031
108 Ga0207668_10000130 3300025972 Bacteria 53528
109 Ga0207668_10000879 3300025972 Bacteria 18115
110 Ga0207668_10001036 3300025972 Bacteria 16597
111 Ga0207668_10021714 3300025972 Bacteria 4098
112 Ga0207658_10000218 3300025986 Bacteria 60270
113 Ga0207658_10032310 3300025986 Bacteria 3724
114 Ga0207703_10000038 3300026035 Bacteria 175917
115 Ga0207703_10000843 3300026035 Bacteria 30142
116 Ga0207703_10161381 3300026035 Bacteria 1963
117 Ga0207639_10031475 3300026041 Bacteria 3900
118 Ga0207641_10000012 3300026088 Bacteria 375486
119 Ga0207641_10013293 3300026088 Bacteria 6752
120 Ga0207641_10021669 3300026088 Bacteria 5279
121 Ga0207641_10039479 3300026088 Bacteria 3948
122 Ga0207641_10285002 3300026088 Bacteria 1555
123 Ga0207676_10000179 3300026095 Bacteria 55697
124 Ga0207676_10000716 3300026095 Bacteria 26001
125 Ga0207675_100297042 3300026118 Bacteria 1572
126 Ga0268266_10009920 3300028379 Bacteria 8366
127 Ga0268266_10036660 3300028379 Bacteria 4176
128 Ga0268265_10001998 3300028380 Bacteria 16117
129 Ga0268265_10012436 3300028380 Bacteria 5767
130 Ga0268265_10016685 3300028380 Bacteria 5052
131 Ga0268265_10018083 3300028380 Bacteria 4881
132 Ga0268264_10000059 3300028381 Bacteria 306927
133 Ga0265337_1019192 3300028556 Bacteria 2160
134 Ga0265334_10009641 3300028573 Bacteria 4083
135 Ga0307517_10000497 3300028786 Bacteria 67390
136 Ga0307517_10171969 3300028786 Bacteria 1422
137 Ga0307515_10093409 3300028794 Bacteria 3730
138 Ga0265338_10010137 3300028800 Bacteria 11117
139 Ga0265338_10044635 3300028800 Bacteria 4089
140 Ga0265338_10045414 3300028800 Bacteria 4040
141 Ga0265338_10096334 3300028800 Bacteria 2428
142 Ga0265340_10066465 3300031247 Bacteria 1716
143 Ga0265316_10052330 3300031344 Bacteria 3204
144 Ga0307513_10002007 3300031456 Bacteria 28699
145 Ga0316575_10023309 3300031665 Bacteria 2393
146 Ga0265314_10038482 3300031711 Bacteria 3454
147 Ga0307516_10000004 3300031730 Bacteria 367451
148 Ga0307413_10065023 3300031824 Bacteria 2269
149 Ga0307412_10019941 3300031911 Bacteria 4071
150 Ga0307412_10142302 3300031911 Bacteria 1758
151 Ga0307414_10067550 3300032004 Bacteria 2561
152 Ga0307414_10074703 3300032004 Bacteria 2457
153 Ga0307414_10170907 3300032004 Bacteria 1738
154 Ga0373947_0033622 3300035725 Bacteria 3029
155 Ga0373937_0302509 3300036401 Bacteria 1512
156 Ga0373925_0030105 3300037068 Bacteria 3983
157 Ga0395899_0000013 3300037312 Bacteria 510397
158 Ga0395899_0197907 3300037312 Bacteria 1403
159 Ga0395900_0017326 3300037418 Bacteria 7354
160 Ga0395905_0049417 3300037471 Bacteria 3941
161 Ga0395905_0163002 3300037471 Bacteria 2095
162 Ga0395905_0163263 3300037471 Bacteria 2093
163 Ga0395905_0169469 3300037471 Bacteria 2051
164 Ga0395901_0026561 3300038443 Bacteria 5946
165 Ga0395901_0160282 3300038443 Bacteria 2363
166 Ga0436361_0839784 3300039447 Bacteria 15678
167 Ga0439446_0011696 3300042156 Bacteria 2386
168 Ga0439435_0014309 3300042436 Bacteria 1959
169 Ga0451577_0013485 3300042876 Bacteria 7646
170 Ga0466959_0070236 3300045049 Bacteria 2537
171 Ga0451576_0015089 3300045051 Bacteria 8579
172 Ga0495627_000443 3300046453 Bacteria 36101
173 Ga0495638_0000701 3300046460 Bacteria 36250
174 Ga0495638_0001931 3300046460 Bacteria 17833
175 Ga0495638_0002456 3300046460 Bacteria 15116
176 Ga0495638_0002536 3300046460 Bacteria 14843
177 Ga0495638_0013658 3300046460 Bacteria 5518
178 Ga0495638_0029390 3300046460 Bacteria 3544
179 Ga0495650_0000017 3300046471 Bacteria 542552
180 Ga0495650_0011596 3300046471 Bacteria 4816
181 Ga0495580_0000011 3300046472 Bacteria 99008
182 Ga0495583_0000020 3300046506 Bacteria 296185
183 Ga0495610_0000535 3300046512 Bacteria 38235
184 Ga0495610_0004816 3300046512 Bacteria 9846
185 Ga0495616_0000375 3300046513 Bacteria 34773
186 Ga0495616_0086002 3300046513 Bacteria 1496
187 Ga0495620_0042238 3300046515 Bacteria 1993
188 Ga0495631_0054433 3300046518 Bacteria 1745
189 Ga0495632_0015392 3300046519 Bacteria 4291
190 Ga0495637_0051790 3300046520 Bacteria 1716
191 Ga0495643_0065966 3300046522 Bacteria 1910
192 Ga0495648_0000948 3300046524 Bacteria 30025
193 Ga0495654_0000750 3300046530 Bacteria 25116
194 Ga0495597_0001428 3300046542 Bacteria 17175
195 Ga0495633_0003982 3300046558 Bacteria 9570
196 Ga0495668_0000092 3300046616 Bacteria 142835
197 Ga0495668_0005380 3300046616 Bacteria 8708
198 Ga0495668_0007539 3300046616 Bacteria 6943
199 Ga0495668_0012174 3300046616 Bacteria 5114
200 Ga0495668_0013626 3300046616 Bacteria 4789
201 Ga0495625_0000865 3300046660 Bacteria 41188
202 Ga0495625_0001714 3300046660 Bacteria 25500
203 Ga0495625_0030019 3300046660 Bacteria 4059
204 Ga0495625_0046221 3300046660 Bacteria 3142
205 Ga0495625_0081362 3300046660 Bacteria 2254
206 Ga0495669_0000234 3300046684 Bacteria 32800
207 Ga0495669_0030940 3300046684 Bacteria 2349
208 Ga0495613_0001318 3300046689 Bacteria 18954
209 Ga0495672_0001016 3300047320 Bacteria 28910
210 Ga0495679_007279 3300047446 Bacteria 4635
211 Ga0495673_0000078 3300047469 Bacteria 203066
212 Ga0495673_0000401 3300047469 Bacteria 50743
213 Ga0495686_0005310 3300047472 Bacteria 10211
214 Ga0495686_0011647 3300047472 Bacteria 6191
215 Ga0496101_0058806 3300048904 Bacteria 2785
216 Ga0496107_0000851 3300048910 Bacteria 17893
217 Ga0496121_0001613 3300048924 Bacteria 37440
218 Ga0496122_0002144 3300048925 Bacteria 29000
219 Ga0496123_0002988 3300048926 Bacteria 19605
220 Ga0496125_0001655 3300048928 Bacteria 31374
221 Ga0496125_0164406 3300048928 Bacteria 1502
222 Ga0496126_0005746 3300048929 Bacteria 14039
223 Ga0496126_0051905 3300048929 Bacteria 3731
224 Ga0495678_001694 3300049459 Bacteria 16655
225 Ga0501034_0059651 3300049571 Bacteria 3832
226 Ga0501047_0148960 3300049581 Bacteria 2216
227 Ga0501035_0277718 3300049822 Bacteria 1417
228 Ga0501044_0010085 3300049823 Bacteria 10265
229 Ga0501044_0185146 3300049823 Bacteria 2048
230 Ga0501044_0291511 3300049823 Bacteria 1563
231 nmdc:mga0k408_52213_c1 3300050493 Bacteria 2369
232 nmdc:mga08x19_25291_c1 3300050514 Bacteria 3697
233 Ga0500635_0000257 3300053080 Bacteria 21745
234 Ga0500578_0000420 3300053086 Bacteria 51926
235 Ga0500643_005112 3300053087 Bacteria 5728
236 Ga0500643_015001 3300053087 Bacteria 2671
237 Ga0500644_0000274 3300053088 Bacteria 28730
238 Ga0500647_0007611 3300053091 Bacteria 4665
239 Ga0500651_0032083 3300053093 Bacteria 3311
240 Ga0500641_0001448 3300053096 Bacteria 8453
241 Ga0500556_0001394 3300053104 Bacteria 10542
242 Ga0500562_001527 3300053108 Bacteria 5723
243 Ga0500562_006973 3300053108 Bacteria 2849
244 Ga0500572_000985 3300053111 Bacteria 8629
245 Ga0500594_0000662 3300053118 Bacteria 7329
246 Ga0500595_001259 3300053119 Bacteria 13945
247 Ga0500597_112286 3300053120 Bacteria 1183
248 Ga0500608_000059 3300053122 Bacteria 48253
249 Ga0500608_000412 3300053122 Bacteria 16319
250 Ga0500608_003422 3300053122 Bacteria 5946
251 Ga0500618_000112 3300053125 Bacteria 65643
252 Ga0500642_0013904 3300053130 Bacteria 2977
253 Ga0500658_0004635 3300053134 Bacteria 5130
254 Ga0500559_0000077 3300053136 Bacteria 76287
255 Ga0500559_0000111 3300053136 Bacteria 64064
256 Ga0500559_0006349 3300053136 Bacteria 5339
257 Ga0500559_0007783 3300053136 Bacteria 4733
258 Ga0500564_000021 3300053138 Bacteria 47765
259 Ga0500590_030989 3300053148 Bacteria 2773
260 Ga0500603_006141 3300053150 Bacteria 2606
261 Ga0500622_0000526 3300053156 Bacteria 35500
262 Ga0500622_0006766 3300053156 Bacteria 6599
263 Ga0500622_0011475 3300053156 Bacteria 4822
264 Ga0500638_062174 3300053162 Bacteria 1793
265 Ga0500636_0022264 3300053177 Bacteria 3750
266 Ga0500636_0033578 3300053177 Bacteria 3037
267 Ga0500637_0027195 3300053178 Bacteria 3156
268 Ga0500645_004189 3300053730 Bacteria 5612
269 Ga0500609_000574 3300053731 Bacteria 5563
270 2511125384 2510917020 Bacteria 5657507
271 2585148532 2582581279 Bacteria 4980720
272 2585153124 2582581280 Bacteria 5994497
273 2585196685 2582581293 Bacteria 5907401
274 2587916700 2585428106 Bacteria 5179711
275 2600203873 2599185354 Bacteria 4398675
276 2643751442 2643221545 Bacteria 5083237
277 2643778234 2643221552 Bacteria 5708754
278 2643883268 2643221574 Bacteria 2789653
279 2643923514 2643221583 Bacteria 5218014
280 2643928388 2643221584 Bacteria 5511711
281 2644000259 2643221598 Bacteria 4578346
282 2644225769 2643221640 Bacteria 5258820
283 2644235258 2643221642 Bacteria 5357871
284 2644351911 2643221663 Bacteria 3425771
285 2644510505 2643221691 Bacteria 5093099
286 2644547531 2643221699 Bacteria 5731501
287 2644547913 2643221699 Bacteria 5731501
288 2739791310 2739367756 Bacteria 4553612
289 2753764006 2751185897 Bacteria 5322941
290 2792460602 2791355048 Bacteria 5832535
291 2819536576 2818991435 Bacteria 5433759
292 2819645737 2818991454 Bacteria 5563326
293 2843747797 2843744320 Bacteria 5659202
294 2849562579 2849560528 Bacteria 5393480
295 2849577147 2849573788 Bacteria 5421256
296 2851153783 2851153111 Bacteria 5542585
297 2857506342 2857504554 Bacteria 5369913
298 2884965092 2884960567 Bacteria 5437054
299 2898329543 2898329390 Bacteria 5168154
300 2928535365 2928531327 Bacteria 5101314
301 2928975101 2928972540 Bacteria 3058286
302 2941488453 2941485952 Bacteria 3591484
303 2977241906 2977240413 Bacteria 3191065
304 Ga0495673_0008213
305 JGI25406J46586_10032589
306 JGI25153J46596_10036154
307 Ga0006562J51391_1044565
308 Ga0055536_1002268
309 Ga0055536_1006546
310 Ga0055536_1006549
311 Ga0055528_1008381
312 Ga0055530_10006183
313 Ga0055530_10008664
314 Ga0055531_10001289
315 Ga0055531_10003885
316 Ga0065165_1001772
317 Ga0070670_100000037
318 Ga0070670_100018130
319 Ga0070670_100059513
320 Ga0070668_100000745
321 Ga0070668_100003730
322 Ga0070659_100005114
323 Ga0070667_100000083
324 Ga0070667_100002362
325 Ga0070667_100032238
326 Ga0070681_10029574
327 Ga0070698_100037791
328 Ga0070698_100192792
329 Ga0068853_100017706
330 Ga0068853_100064970
331 Ga0070665_100000483
332 Ga0070665_100083324
333 Ga0068855_100051821
334 Ga0070664_100020264
335 Ga0068859_100000391
336 Ga0068859_100035948
337 Ga0068864_100000116
338 Ga0068864_100002763
339 Ga0068864_100024841
340 Ga0068864_100050995
341 Ga0068863_100000007
342 Ga0068863_100011066
343 Ga0068863_100043637
344 Ga0068858_100000031
345 Ga0068858_100003203
346 Ga0068858_100010268
347 Ga0068860_100000348
348 Ga0068860_100019770
349 Ga0068862_100000235
350 Ga0068862_100016230
351 Ga0068862_100035458
352 Ga0081539_10001263
353 Ga0075366_10001431
354 Ga0075366_10083470
355 Ga0097620_100000391
356 Ga0097620_100035948
357 Ga0105240_10018121
358 Ga0105240_10140045
359 Ga0105248_10008920
360 Ga0105248_10157280
361 Ga0105238_10224470
362 Ga0105249_10265939
363 Ga0105249_10266980
364 Ga0105239_10024722
365 Ga0157373_10020380
366 Ga0157371_10111401
367 Ga0157370_10003703
368 Ga0157370_10058742
369 Ga0157369_10465106
370 Ga0157378_10013994
371 Ga0163162_10005214
372 Ga0163162_10016992
373 Ga0157372_10323163
374 Ga0163163_10026798
375 Ga0163163_10109167
376 Ga0182008_10050907
377 Ga0157379_10000578
378 Ga0157379_10026584
379 Ga0213872_10009215
380 Ga0209565_1000332
381 Ga0209673_1000523
382 Ga0209676_1000061
383 Ga0209676_1000327
384 Ga0209676_1000409
385 Ga0209564_1008702
386 Ga0209564_1025848
387 Ga0209758_1002872
388 Ga0209758_1009102
389 Ga0209050_1001254
390 Ga0209050_1002240
391 Ga0209050_1021019
392 Ga0209256_1003815
393 Ga0209256_1011919
394 Ga0209256_1019233
395 Ga0209051_1000338
396 Ga0209257_1000178
397 Ga0209257_1000386
398 Ga0209257_1001334
399 Ga0209257_1009028
400 Ga0207710_10039176
401 Ga0207707_10054533
402 Ga0207695_10004001
403 Ga0207695_10097298
404 Ga0207660_10015410
405 Ga0207694_10150174
406 Ga0207650_10000062
407 Ga0207690_10006268
408 Ga0207711_10091576
409 Ga0207679_10021157
410 Ga0207712_10114123
411 Ga0207668_10000130
412 Ga0207668_10000879
413 Ga0207668_10001036
414 Ga0207668_10021714
415 Ga0207658_10000218
416 Ga0207658_10032310
417 Ga0207703_10000038
418 Ga0207703_10000843
419 Ga0207703_10161381
420 Ga0207639_10031475
421 Ga0207641_10000012
422 Ga0207641_10013293
423 Ga0207641_10021669
424 Ga0207641_10039479
425 Ga0207641_10285002
426 Ga0207676_10000179
427 Ga0207676_10000716
428 Ga0207675_100297042
429 Ga0268266_10009920
430 Ga0268266_10036660
431 Ga0268265_10001998
432 Ga0268265_10012436
433 Ga0268265_10016685
434 Ga0268265_10018083
435 Ga0268264_10000059
436 Ga0265337_1019192
437 Ga0265334_10009641
438 Ga0307517_10000497
439 Ga0307517_10171969
440 Ga0307515_10093409
441 Ga0265338_10010137
442 Ga0265338_10044635
443 Ga0265338_10045414
444 Ga0265338_10096334
445 Ga0265340_10066465
446 Ga0265316_10052330
447 Ga0307513_10002007
448 Ga0316575_10023309
449 Ga0265314_10038482
450 Ga0307516_10000004
451 Ga0307413_10065023
452 Ga0307412_10019941
453 Ga0307412_10142302
454 Ga0307414_10067550
455 Ga0307414_10074703
456 Ga0307414_10170907
457 Ga0373947_0033622
458 Ga0373937_0302509
459 Ga0373925_0030105
460 Ga0395899_0000013
461 Ga0395899_0197907
462 Ga0395900_0017326
463 Ga0395905_0049417
464 Ga0395905_0163002
465 Ga0395905_0163263
466 Ga0395905_0169469
467 Ga0395901_0026561
468 Ga0395901_0160282
469 Ga0436361_0839784
470 Ga0439446_0011696
471 Ga0439435_0014309
472 Ga0451577_0013485
473 Ga0466959_0070236
474 Ga0451576_0015089
475 Ga0495627_000443
476 Ga0495638_0000701
477 Ga0495638_0001931
478 Ga0495638_0002456
479 Ga0495638_0002536
480 Ga0495638_0013658
481 Ga0495638_0029390
482 Ga0495650_0000017
483 Ga0495650_0011596
484 Ga0495580_0000011
485 Ga0495583_0000020
486 Ga0495610_0000535
487 Ga0495610_0004816
488 Ga0495616_0000375
489 Ga0495616_0086002
490 Ga0495620_0042238
491 Ga0495631_0054433
492 Ga0495632_0015392
493 Ga0495637_0051790
494 Ga0495643_0065966
495 Ga0495648_0000948
496 Ga0495654_0000750
497 Ga0495597_0001428
498 Ga0495633_0003982
499 Ga0495668_0000092
500 Ga0495668_0005380
501 Ga0495668_0007539
502 Ga0495668_0012174
503 Ga0495668_0013626
504 Ga0495625_0000865
505 Ga0495625_0001714
506 Ga0495625_0030019
507 Ga0495625_0046221
508 Ga0495625_0081362
509 Ga0495669_0000234
510 Ga0495669_0030940
511 Ga0495613_0001318
512 Ga0495672_0001016
513 Ga0495679_007279
514 Ga0495673_0000078
515 Ga0495673_0000401
516 Ga0495686_0005310
517 Ga0495686_0011647
518 Ga0496101_0058806
519 Ga0496107_0000851
520 Ga0496121_0001613
521 Ga0496122_0002144
522 Ga0496123_0002988
523 Ga0496125_0001655
524 Ga0496125_0164406
525 Ga0496126_0005746
526 Ga0496126_0051905
527 Ga0495678_001694
528 Ga0501034_0059651
529 Ga0501047_0148960
530 Ga0501035_0277718
531 Ga0501044_0010085
532 Ga0501044_0185146
533 Ga0501044_0291511
534 nmdc:mga0k408_52213_c1
535 nmdc:mga08x19_25291_c1
536 Ga0500635_0000257
537 Ga0500578_0000420
538 Ga0500643_005112
539 Ga0500643_015001
540 Ga0500644_0000274
541 Ga0500647_0007611
542 Ga0500651_0032083
543 Ga0500641_0001448
544 Ga0500556_0001394
545 Ga0500562_001527
546 Ga0500562_006973
547 Ga0500572_000985
548 Ga0500594_0000662
549 Ga0500595_001259
550 Ga0500597_112286
551 Ga0500608_000059
552 Ga0500608_000412
553 Ga0500608_003422
554 Ga0500618_000112
555 Ga0500642_0013904
556 Ga0500658_0004635
557 Ga0500559_0000077
558 Ga0500559_0000111
559 Ga0500559_0006349
560 Ga0500559_0007783
561 Ga0500564_000021
562 Ga0500590_030989
563 Ga0500603_006141
564 Ga0500622_0000526
565 Ga0500622_0006766
566 Ga0500622_0011475
567 Ga0500638_062174
568 Ga0500636_0022264
569 Ga0500636_0033578
570 Ga0500637_0027195
571 Ga0500645_004189
572 Ga0500609_000574
573 2511125384
574 2585148532
575 2585153124
576 2585196685
577 2587916700
578 2600203873
579 2643751442
580 2643778234
581 2643883268
582 2643923514
583 2643928388
584 2644000259
585 2644225769
586 2644235258
587 2644351911
588 2644510505
589 2644547531
590 2644547913
591 2739791310
592 2753764006
593 2792460602
594 2819536576
595 2819645737
596 2843747797
597 2849562579
598 2849577147
599 2851153783
600 2857506342
601 2884965092
602 2898329543
603 2928535365
604 2928975101
605 2941488453
606 2977241906

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08436

DXP_redisom_C

1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain

159

242

0.99

PF02670

DXP_reductoisom

1-deoxy-D-xylulose 5-phosphate reductoisomerase

20

145

0.98

PF13288

DXPR_C

DXP reductoisomerase C-terminal domain

274

397

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
2jcx-assembly1.cif.gz_A x-ray structure of mutant 1-deoxy-d-xylulose 5-phosphate reductoisomerase, dxr, rv2870c, from mycobacterium tuberculosis, in complex with fosmidomycin and nadph 0.9611 5 358
4aic-assembly1.cif.gz_A x-ray structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase, dxr, rv2870c, from mycobacterium tuberculosis, in complex with fosmidomycin, manganese and nadph 0.9608 5 358
4oof-assembly1.cif.gz_B m. tuberculosis 1-deoxy-d-xylulose-5-phosphate reductoisomerase w203f mutant bound to fosmidomycin and nadph 0.9589 6 360
4ooe-assembly2.cif.gz_C m. tuberculosis 1-deoxy-d-xylulose-5-phosphate reductoisomerase w203y mutant bound to fosmidomycin and nadph 0.9558 6 360
7s04-assembly1.cif.gz_A-2 1-deoxy-d-xylulose 5-phosphate reductoisomerase (ispc) from acinetobacter baumannii in complex with fr900098, nadph, and a magnesium ion 0.9505 5 358
ID Description Score Start End Superfamily
4zn6B03 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9876 280 358 1.10.1740.10
2jd0A03 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.981 278 358 1.10.1740.10
3zhyB03 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9802 278 360 1.10.1740.10
3zhzA03 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9794 278 358 1.10.1740.10
1q0hA03 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9752 278 358 1.10.1740.10
ID Description Score Start End GO Terms
AF-A0A7W0Q0W0-F1-model_v4 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) 0.9884 5 358 GO:0016853
GO:0030145
GO:0030604
GO:0051484
GO:0070402
AF-A0A538L4Q4-F1-model_v4 1-deoxy-D-xylulose-5-phosphate reductoisomerase (EC 1.1.1.267) 0.987 5 202 GO:0016853
GO:0030145
GO:0030604
GO:0051484
GO:0070402
AF-A0A538HSL8-F1-model_v4 1-deoxy-D-xylulose-5-phosphate reductoisomerase 0.986 5 136 GO:0016853
GO:0030145
GO:0030604
GO:0051484
GO:0070402
AF-A0A7Y1XAT2-F1-model_v4 1-deoxy-D-xylulose-5-phosphate reductoisomerase (EC 1.1.1.267) 0.9857 72 358 GO:0016853
GO:0030145
GO:0030604
GO:0051484
GO:0070402
AF-A0A368EGC7-F1-model_v4 1-deoxy-D-xylulose-5-phosphate reductoisomerase (EC 1.1.1.267) 0.9822 132 358 GO:0016853
GO:0030145
GO:0030604
GO:0051484
GO:0070402

Map