F396775

General Info

Members Datasets Scaffolds Average Seq Length
302 248 604 384

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2935390628|2935394905
Length 448
Sequence EGGTTGGSAGAATGGLKRSLGVGDAVVVGLGAMVGAGIFAALAPAARAAGGALLTALAVAAVVASCNAWSSARLAARHPASGGTYVYGRERLGPFWGYLAGWAFVIGKTASCAAMALTVGAYLWPGREHVVAVVAVVALTAAGYGGVQKSARIARVIVAVVLAVLAGVVAACLTSGAADVAGAFGRGGSGPDGSGGVRGVLGAAGLLFFAFAGYARITTLGEEVRDPRRTIPRAVPLALGIALAVYAAVAVAVLSVLGVEGLAGSAAPLSDAVRAAGWSGLTPVVRAGAVLAALGSLLALVLGVSRTALAMARDGHLPRALAAVHPRHGTPHRAEAAVGAVVAVLAATVDLRGAIGFSSFGVLVYYAIANASAWTLGGSEEPGTGGRGVDRGGRVVAATGLAGCVALACALPPASVVAGAGVLALGALLYGVGVRRRPGPPAGSGPAR

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
22 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
25 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
26 3300009987 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_213 metaG Metagenome Rhizosphere
27 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
28 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
29 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
30 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
31 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
49 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
50 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
51 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
52 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
53 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
54 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
55 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
56 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
57 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
58 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
59 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
60 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
61 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
62 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
63 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
64 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
65 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
66 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
67 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
68 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
69 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
70 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
71 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
72 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
73 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
74 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
75 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
76 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
77 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
78 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
79 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
80 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
81 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
82 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
83 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
84 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
85 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
86 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
87 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
88 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
89 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
90 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
91 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
92 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
93 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
94 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
95 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
96 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
97 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
98 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
99 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
100 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
101 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
102 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
103 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
104 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
105 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
106 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
107 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
108 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
109 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
110 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
111 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
112 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
113 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
114 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
115 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
116 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
117 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
118 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
119 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
120 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
121 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
124 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
127 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
130 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
133 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
134 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
135 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
136 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
137 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
138 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
139 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
140 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
141 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
142 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
143 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
146 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
147 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
148 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
149 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
150 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
151 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
152 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
153 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
154 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
155 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
156 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
157 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
158 2501939600 Micromonospora sp. L5 Isolate Unclassified
159 2506783011 Frankia datiscae Dg1 Isolate Nodule
160 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
161 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
162 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
163 2515154155 Actinopolymorpha alba DSM 45243 Isolate Rhizosphere
164 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
165 2582580736 Prauserella sp. Am3 Isolate Unclassified
166 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
167 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
168 2626541554 Frankia sp. AvcI.1 Isolate Nodule
169 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
170 2643221670 Streptomyces sp. Root431 Isolate Unclassified
171 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
172 2643221679 Angustibacter sp. Root456 Isolate Unclassified
173 2643221687 Mycobacterium sp. Root135 Isolate Unclassified
174 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
175 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
176 2675903058 Actinopolymorpha cephalotaxi CPCC 202808 Isolate Rhizosphere
177 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
178 2731639228 Motilibacter peucedani DSM 45328 Isolate Rhizosphere
179 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
180 2773857933 Frankia sp. BMG5.30 Isolate Nodule
181 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
182 2811994880 Cellulomonas sp. SLBN-39 Isolate Unclassified
183 2827628540 Actinopolymorpha cephalotaxi DSM 45117 Isolate Rhizosphere
184 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
185 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
186 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
187 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
188 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
189 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
190 2855683550 Micromonospora sp. RP3T Isolate Unclassified
191 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
192 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
193 2857479173 Micrococcus sp. R-74225 Isolate Unclassified
194 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
195 2857632687 Micrococcus sp. R-73081 Isolate Unclassified
196 2857710386 Brevibacterium sp. R-73093 Isolate Unclassified
197 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
198 2858868258 Micromonospora sp. MH33 Isolate Unclassified
199 2858882152 Micromonospora noduli MED15 Isolate Nodule
200 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
201 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
202 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
203 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
204 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
205 2862705112 Streptomyces triticirhizae NEAU-YY642 Isolate Rhizosphere
206 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
207 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
208 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
209 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
210 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
211 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
212 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
213 2870801768 Micrococcus endophyticus DSM 17945 Isolate Unclassified
214 2870804320 Micrococcus yunnanensis DSM 21948 Isolate Unclassified
215 2873314349 Sphaerisporangium siamense DSM 45784 Isolate Rhizosphere
216 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
217 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
218 2891326441 Actinokineospora pegani TRM65233 Isolate Unclassified
219 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
220 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
221 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
222 2902582711 Micromonospora sp. AP08 Isolate Unclassified
223 2902837492 Mycolicibacterium sp. P1-18 Isolate Unclassified
224 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
225 2919713450 Nocardia kruczakiae 4272 Isolate Rhizosphere
226 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
227 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
228 2945941187 Arthrobacter pascens W1I14 Isolate Rhizosphere
229 2946059875 Arthrobacter sp. SLBN-112 Isolate Rhizosphere
230 2956939328 Lolliginicoccus suaedae LNNU 331112 Isolate Rhizosphere
231 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
232 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root
233 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
234 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
235 3001119090 Lolliginicoccus lacisalsi G463 Isolate Rhizosphere
236 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
237 649633069 Micromonospora sp. L5 Isolate Unclassified
238 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
239 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
240 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
241 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
242 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
243 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
244 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
245 8054734606 Micromonospora hortensis NIE111 Isolate Nodule
246 8055157932 Frankia umida Ag45/Mut15 Isolate Nodule
247 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule
248 8057568493 Actinorhabdospora filicis NBRC 111898 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 69.54
Metatranscriptomes 0
Isolates 30.46

Biome Distribution

Category Percentage (%)
Aerial Root 0.33
Bulb 0
Endosphere 2.98
Nodule 3.31
Rhizoplane 4.97
Rhizosphere 64.24
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10004712 3300003203 Bacteria 6344
2 rootH1_10008532 3300003323 Bacteria 11130
3 JGI25160J50197_1000544 3300003354 Bacteria 21428
4 Ga0070658_10000137 3300005327 Bacteria 64236
5 Ga0070658_10093470 3300005327 Bacteria 2481
6 Ga0070683_100092201 3300005329 Bacteria 2845
7 Ga0070670_100031932 3300005331 Bacteria 4534
8 Ga0070666_10029898 3300005335 Bacteria 3585
9 Ga0070660_100123590 3300005339 Bacteria 2067
10 Ga0070671_100003042 3300005355 Bacteria 13052
11 Ga0070671_100040037 3300005355 Bacteria 3891
12 Ga0070709_10044094 3300005434 Bacteria 2761
13 Ga0070714_100165683 3300005435 Bacteria 2003
14 Ga0070713_100065718 3300005436 Bacteria 3048
15 Ga0070678_100022788 3300005456 Bacteria 4159
16 Ga0068867_100018289 3300005459 Bacteria 4981
17 Ga0070684_100383660 3300005535 Bacteria 1294
18 Ga0068855_100017357 3300005563 Bacteria 8660
19 Ga0068857_100237520 3300005577 Bacteria 1668
20 Ga0068861_100007700 3300005719 Bacteria 7395
21 Ga0068860_100011053 3300005843 Bacteria 8901
22 Ga0081455_10000105 3300005937 Bacteria 93356
23 Ga0081540_1012306 3300005983 Bacteria 5647
24 Ga0081539_10000661 3300005985 Bacteria 69277
25 Ga0070717_10041818 3300006028 Bacteria 3737
26 Ga0075363_100018582 3300006048 Bacteria 3466
27 Ga0075430_100007209 3300006846 Bacteria 9383
28 Ga0105030_100315 3300009987 Bacteria 4244
29 Ga0157369_10053898 3300013105 Bacteria 4344
30 Ga0157369_10147869 3300013105 Bacteria 2484
31 Ga0163162_10239324 3300013306 Bacteria 1946
32 Ga0213876_10032737 3300021384 Bacteria 2741
33 Ga0207426_1000741 3300025302 Bacteria 36954
34 Ga0207426_1000749 3300025302 Bacteria 36538
35 Ga0207655_1020243 3300025728 Bacteria 3428
36 Ga0207705_10002420 3300025909 Bacteria 14405
37 Ga0207707_10119248 3300025912 Bacteria 2306
38 Ga0207693_10081272 3300025915 Bacteria 2537
39 Ga0207657_10133849 3300025919 Bacteria 2030
40 Ga0207649_10147554 3300025920 Bacteria 1616
41 Ga0207700_10066219 3300025928 Bacteria 2760
42 Ga0207644_10003992 3300025931 Bacteria 9581
43 Ga0207644_10039138 3300025931 Bacteria 3345
44 Ga0207669_10032677 3300025937 Bacteria 2926
45 Ga0207691_10007397 3300025940 Bacteria 10577
46 Ga0207651_10064191 3300025960 Bacteria 2569
47 Ga0207678_10042448 3300026067 Bacteria 3939
48 Ga0207702_10003725 3300026078 Bacteria 13787
49 Ga0207648_10026013 3300026089 Bacteria 5204
50 Ga0207675_100002399 3300026118 Bacteria 18554
51 Ga0207683_10037680 3300026121 Bacteria 4211
52 Ga0268264_10007845 3300028381 Bacteria 8886
53 Ga0268264_10244404 3300028381 Bacteria 1664
54 Ga0307515_10000167 3300028794 Bacteria 160820
55 Ga0307515_10014041 3300028794 Bacteria 14900
56 Ga0307511_10000963 3300030521 Bacteria 30516
57 Ga0265327_10000367 3300031251 Bacteria 85619
58 Ga0265327_10007685 3300031251 Bacteria 8257
59 Ga0307509_10007359 3300031507 Bacteria 14420
60 Ga0307509_10013573 3300031507 Bacteria 9637
61 Ga0307508_10145391 3300031616 Bacteria 1975
62 Ga0307516_10048466 3300031730 Bacteria 4180
63 Ga0307405_10018184 3300031731 Bacteria 3873
64 Ga0307405_10111439 3300031731 Bacteria 1855
65 Ga0307410_10032489 3300031852 Bacteria 3359
66 Ga0307406_10144127 3300031901 Bacteria 1690
67 Ga0307412_10057837 3300031911 Bacteria 2590
68 Ga0307412_10081929 3300031911 Bacteria 2233
69 Ga0307412_10099094 3300031911 Bacteria 2057
70 Ga0307409_100010888 3300031995 Bacteria 5692
71 Ga0307416_100027595 3300032002 Bacteria 4207
72 Ga0307414_10160114 3300032004 Bacteria 1787
73 Ga0307510_10001830 3300033180 Bacteria 23821
74 Ga0307510_10006665 3300033180 Bacteria 13778
75 Ga0395900_0111100 3300037418 Bacteria 2815
76 Ga0395898_0003940 3300037466 Bacteria 16385
77 Ga0395898_0152513 3300037466 Bacteria 2210
78 Ga0395905_0021839 3300037471 Bacteria 6054
79 Ga0395901_0209716 3300038443 Bacteria 2039
80 Ga0400483_050773 3300039062 Bacteria 27648
81 Ga0400483_228778 3300039062 Bacteria 97865
82 Ga0436365_0350974 3300039437 Bacteria 14303
83 Ga0436365_0529637 3300039437 Bacteria 32938
84 Ga0439442_000222 3300042002 Bacteria 14136
85 Ga0450920_011431 3300042122 Bacteria 1655
86 Ga0466969_0006673 3300044656 Bacteria 6135
87 Ga0466966_0001111 3300044684 Bacteria 17257
88 Ga0466963_0071364 3300044694 Bacteria 2337
89 Ga0466963_0104189 3300044694 Bacteria 1944
90 Ga0466963_0124482 3300044694 Bacteria 1776
91 Ga0466964_0077666 3300044706 Bacteria 1418
92 Ga0466970_0011346 3300044765 Bacteria 4542
93 Ga0466957_0021251 3300044842 Bacteria 3823
94 Ga0466957_0050816 3300044842 Bacteria 2523
95 Ga0466960_0036297 3300044901 Bacteria 2307
96 Ga0466959_0261813 3300045049 Bacteria 1190
97 Ga0466958_0011689 3300045836 Bacteria 4952
98 Ga0495592_0012143 3300046454 Bacteria 6536
99 Ga0495592_0021846 3300046454 Bacteria 4869
100 Ga0495603_0037609 3300046455 Bacteria 2904
101 Ga0495629_0022084 3300046459 Bacteria 4538
102 Ga0495638_0034269 3300046460 Bacteria 3242
103 Ga0495651_0011481 3300046462 Bacteria 6802
104 Ga0495662_0026156 3300046476 Bacteria 2818
105 Ga0495664_0008139 3300046477 Bacteria 5838
106 Ga0495628_0022124 3300046516 Bacteria 5226
107 Ga0495648_0012214 3300046524 Bacteria 6419
108 Ga0495652_0068352 3300046529 Bacteria 2976
109 Ga0495587_0007853 3300046536 Bacteria 6890
110 Ga0495622_0017027 3300046557 Bacteria 3384
111 Ga0495656_0075044 3300046615 Bacteria 1512
112 Ga0495634_0004085 3300046642 Bacteria 11559
113 Ga0495634_0023127 3300046642 Bacteria 4371
114 Ga0495635_0013220 3300046663 Bacteria 5777
115 Ga0495657_0006152 3300046675 Bacteria 9406
116 Ga0495646_0004549 3300046680 Bacteria 8737
117 Ga0495613_0004702 3300046689 Bacteria 10244
118 Ga0495581_0008192 3300047315 Bacteria 6055
119 Ga0495581_0020879 3300047315 Bacteria 3800
120 Ga0495672_0004499 3300047320 Bacteria 11391
121 Ga0495676_0002748 3300047321 Bacteria 15785
122 Ga0495676_0005153 3300047321 Bacteria 11970
123 Ga0495676_0013895 3300047321 Bacteria 7219
124 Ga0495683_0000713 3300047323 Bacteria 24219
125 Ga0495687_010764 3300047443 Bacteria 4983
126 Ga0495675_0019871 3300047444 Bacteria 4269
127 Ga0495677_0020981 3300047445 Bacteria 2368
128 Ga0495673_0000928 3300047469 Bacteria 26577
129 Ga0495684_0069526 3300047471 Bacteria 2677
130 Ga0495593_0000705 3300047673 Bacteria 19295
131 Ga0495602_0030086 3300048088 Bacteria 5158
132 Ga0495614_0001537 3300048089 Bacteria 10001
133 Ga0496102_0077307 3300048905 Bacteria 3063
134 Ga0496102_0127765 3300048905 Bacteria 2377
135 Ga0496102_0233861 3300048905 Bacteria 1732
136 Ga0496105_0051063 3300048908 Bacteria 3417
137 Ga0496107_0073519 3300048910 Bacteria 2486
138 Ga0496107_0242694 3300048910 Bacteria 1340
139 Ga0496108_0148078 3300048911 Bacteria 2025
140 Ga0496109_0205371 3300048912 Bacteria 1852
141 Ga0496109_0228143 3300048912 Bacteria 1751
142 Ga0496109_0369205 3300048912 Bacteria 1355
143 Ga0496110_0023767 3300048913 Bacteria 5216
144 Ga0496110_0272628 3300048913 Bacteria 1540
145 Ga0496111_0007516 3300048914 Bacteria 7150
146 Ga0496111_0125071 3300048914 Bacteria 1900
147 Ga0496113_0092513 3300048916 Bacteria 2332
148 Ga0496118_0009904 3300048921 Bacteria 9525
149 Ga0496119_0000497 3300048922 Bacteria 53611
150 Ga0496119_0063701 3300048922 Bacteria 2192
151 Ga0496120_0002351 3300048923 Bacteria 19430
152 Ga0496126_0121873 3300048929 Bacteria 2260
153 Ga0501031_0000401 3300049568 Bacteria 25310
154 Ga0501032_0009639 3300049569 Bacteria 6996
155 Ga0501032_0041228 3300049569 Bacteria 3136
156 Ga0501033_0008474 3300049570 Bacteria 7959
157 Ga0501034_0000572 3300049571 Bacteria 58406
158 Ga0501034_0006709 3300049571 Bacteria 12342
159 Ga0501034_0007174 3300049571 Bacteria 11891
160 Ga0501034_0094332 3300049571 Bacteria 2989
161 Ga0501036_0001930 3300049572 Bacteria 16093
162 Ga0501036_0110058 3300049572 Bacteria 2328
163 Ga0501036_0175504 3300049572 Bacteria 1804
164 Ga0501037_0007645 3300049573 Bacteria 7912
165 Ga0501037_0058334 3300049573 Bacteria 2817
166 Ga0501040_0001881 3300049576 Bacteria 13463
167 Ga0501040_0022567 3300049576 Bacteria 4214
168 Ga0501040_0120132 3300049576 Bacteria 1844
169 Ga0501041_0000925 3300049577 Bacteria 15890
170 Ga0501042_0073181 3300049578 Bacteria 2452
171 Ga0501046_0001150 3300049580 Bacteria 25719
172 Ga0501046_0021349 3300049580 Bacteria 5344
173 Ga0501047_0031575 3300049581 Bacteria 5108
174 Ga0501047_0036693 3300049581 Bacteria 4738
175 Ga0501048_0007676 3300049582 Bacteria 8177
176 Ga0501048_0136595 3300049582 Bacteria 1733
177 Ga0501069_0007704 3300049585 Bacteria 5650
178 Ga0501072_0244955 3300049588 Bacteria 1428
179 Ga0501073_0082673 3300049589 Bacteria 2234
180 Ga0501074_0052567 3300049590 Bacteria 2940
181 Ga0501074_0077604 3300049590 Bacteria 2384
182 Ga0501075_0023046 3300049591 Bacteria 4554
183 Ga0501075_0075642 3300049591 Bacteria 2546
184 Ga0501076_0001663 3300049592 Bacteria 15028
185 Ga0501076_0150830 3300049592 Bacteria 1891
186 Ga0501079_0076340 3300049741 Bacteria 2592
187 Ga0501080_0025496 3300049742 Bacteria 5488
188 Ga0501081_0043523 3300049743 Bacteria 3080
189 Ga0501083_0051142 3300049744 Bacteria 2779
190 Ga0501035_0001907 3300049822 Bacteria 20932
191 Ga0501035_0012547 3300049822 Bacteria 7828
192 Ga0501035_0034628 3300049822 Bacteria 4587
193 Ga0501035_0219025 3300049822 Bacteria 1626
194 Ga0501044_0004131 3300049823 Bacteria 16298
195 Ga0501044_0004440 3300049823 Bacteria 15696
196 Ga0501044_0015652 3300049823 Bacteria 8168
197 Ga0501045_0005235 3300049824 Bacteria 8974
198 Ga0501045_0208719 3300049824 Bacteria 1455
199 nmdc:mga0qj67_9688_c1 3300050509 Bacteria 7175
200 nmdc:mga06r32_332417_c1 3300050510 Bacteria 1504
201 Ga0500643_005366 3300053087 Bacteria 5540
202 Ga0500640_025300 3300053095 Bacteria 2582
203 Ga0500641_0000705 3300053096 Bacteria 12090
204 Ga0500616_0001638 3300053153 Bacteria 20718
205 Ga0500645_000031 3300053730 Bacteria 119643
206 Ga0501084_0137183 3300054114 Bacteria 2059
207 Ga0501082_0005055 3300060353 Bacteria 11499
208 Ga0466962_0013222 3300061719 Bacteria 3969
209 Ga0530510_0001996 3300061734 Bacteria 13988
210 Ga0530510_0006214 3300061734 Bacteria 8304
211 2935394905 2935390628 Bacteria 7043367
212 2501945519 2501939600 Bacteria 6907073
213 2506864625 2506783011 Bacteria 5323186
214 2515495373 2515154088 Bacteria 5526283
215 2515720011 2515154129 Bacteria 5584369
216 2515759113 2515154137 Bacteria 5711575
217 2515852894 2515154155 Bacteria 7985436
218 2516092182 2515154203 Bacteria 5458536
219 2583149677 2582580736 Bacteria 5325865
220 2585319552 2582581314 Bacteria 11452267
221 2623585330 2622736626 Bacteria 7181580
222 2626635183 2626541554 Bacteria 7741902
223 2643942034 2643221587 Bacteria 7586415
224 2644389682 2643221670 Bacteria 6497041
225 2644429117 2643221677 Bacteria 7584031
226 2644444441 2643221679 Bacteria 3839507
227 2644487371 2643221687 Bacteria 6500351
228 2645719960 2643221961 Bacteria 3919167
229 2645726833 2643221962 Bacteria 3874254
230 2676473410 2675903058 Bacteria 6822861
231 2676482703 2675903059 Bacteria 8644972
232 2731909272 2731639228 Bacteria 4187555
233 2772645390 2772190715 Bacteria 6959372
234 2774904975 2773857933 Bacteria 5818019
235 2784589674 2784132148 Bacteria 8627943
236 2812363113 2811994880 Bacteria 4147780
237 2827631920 2827628540 Bacteria 6858585
238 2831937197 2831935698 Bacteria 5963223
239 2832010106 2832004796 Bacteria 6538017
240 2837268844 2837268691 Bacteria 7850704
241 2852640382 2852635781 Bacteria 8251373
242 2855675937 2855670206 Bacteria 7120389
243 2855677132 2855676851 Bacteria 7063653
244 2855687506 2855683550 Bacteria 7134265
245 2856859258 2856858025 Bacteria 7255264
246 2857289386 2857288857 Bacteria 7189066
247 2857480636 2857479173 Bacteria 2469263
248 2857484810 2857481737 Bacteria 4761446
249 2857634046 2857632687 Bacteria 2448521
250 2857712568 2857710386 Bacteria 3186771
251 2858850167 2858848962 Bacteria 6963058
252 2858872206 2858868258 Bacteria 7683772
253 2858884811 2858882152 Bacteria 7230291
254 2858892178 2858888857 Bacteria 7060307
255 2858900280 2858895516 Bacteria 7378898
256 2858902670 2858902515 Bacteria 7086037
257 2861527568 2861520306 Bacteria 8348283
258 2862293469 2862290372 Bacteria 7471434
259 2862709744 2862705112 Bacteria 6563286
260 2866068067 2866065130 Bacteria 6518152
261 2866614762 2866612099 Bacteria 7543886
262 2867306000 2867302475 Bacteria 7087181
263 2867510633 2867507094 Bacteria 6506033
264 2869053669 2869048445 Bacteria 6875584
265 2869064309 2869061728 Bacteria 7112407
266 2869072275 2869068681 Bacteria 7205615
267 2870802364 2870801768 Bacteria 2710986
268 2870804446 2870804320 Bacteria 2552467
269 2873315695 2873314349 Bacteria 8512634
270 2880494906 2880489317 Bacteria 7096270
271 2880497437 2880495981 Bacteria 7340502
272 2891326819 2891326441 Bacteria 6439512
273 2891398823 2891395885 Bacteria 9251614
274 2895437993 2895427314 Bacteria 13147766
275 2899367112 2899359706 Bacteria 10940472
276 2902584557 2902582711 Bacteria 6187705
277 2902839480 2902837492 Bacteria 6697721
278 2918505769 2918501144 Bacteria 8668083
279 2919713570 2919713450 Bacteria 7431245
280 2929226001 2929219909 Bacteria 6984360
281 2929232661 2929226422 Bacteria 7248583
282 2945942913 2945941187 Bacteria 4682474
283 2946062623 2946059875 Bacteria 4386623
284 2956940095 2956939328 Bacteria 3474458
285 2974319915 2974315732 Bacteria 4602776
286 2984523784 2984523437 Bacteria 4508481
287 2990093358 2990088156 Bacteria 6657676
288 2996221993 2996221748 Bacteria 6799777
289 3001121513 3001119090 Bacteria 3449530
290 3006326945 3006321560 Bacteria 8247479
291 649812874 649633069 Bacteria 6962533
292 8003832426 8003830390 Bacteria 6541657
293 8003863170 8003856774 Bacteria 7675274
294 8003875562 8003870546 Bacteria 7396674
295 8025418303 8025413630 Bacteria 7014048
296 8025532378 8025530807 Bacteria 8495698
297 8054704252 8054704163 Bacteria 7247792
298 8054731653 8054727385 Bacteria 7558670
299 8054739907 8054734606 Bacteria 6947278
300 8055158874 8055157932 Bacteria 6429399
301 8055413515 8055412473 Bacteria 6257500
302 8057570382 8057568493 Bacteria 7221719
303 JGI25406J46586_10004712
304 rootH1_10008532
305 JGI25160J50197_1000544
306 Ga0070658_10000137
307 Ga0070658_10093470
308 Ga0070683_100092201
309 Ga0070670_100031932
310 Ga0070666_10029898
311 Ga0070660_100123590
312 Ga0070671_100003042
313 Ga0070671_100040037
314 Ga0070709_10044094
315 Ga0070714_100165683
316 Ga0070713_100065718
317 Ga0070678_100022788
318 Ga0068867_100018289
319 Ga0070684_100383660
320 Ga0068855_100017357
321 Ga0068857_100237520
322 Ga0068861_100007700
323 Ga0068860_100011053
324 Ga0081455_10000105
325 Ga0081540_1012306
326 Ga0081539_10000661
327 Ga0070717_10041818
328 Ga0075363_100018582
329 Ga0075430_100007209
330 Ga0105030_100315
331 Ga0157369_10053898
332 Ga0157369_10147869
333 Ga0163162_10239324
334 Ga0213876_10032737
335 Ga0207426_1000741
336 Ga0207426_1000749
337 Ga0207655_1020243
338 Ga0207705_10002420
339 Ga0207707_10119248
340 Ga0207693_10081272
341 Ga0207657_10133849
342 Ga0207649_10147554
343 Ga0207700_10066219
344 Ga0207644_10003992
345 Ga0207644_10039138
346 Ga0207669_10032677
347 Ga0207691_10007397
348 Ga0207651_10064191
349 Ga0207678_10042448
350 Ga0207702_10003725
351 Ga0207648_10026013
352 Ga0207675_100002399
353 Ga0207683_10037680
354 Ga0268264_10007845
355 Ga0268264_10244404
356 Ga0307515_10000167
357 Ga0307515_10014041
358 Ga0307511_10000963
359 Ga0265327_10000367
360 Ga0265327_10007685
361 Ga0307509_10007359
362 Ga0307509_10013573
363 Ga0307508_10145391
364 Ga0307516_10048466
365 Ga0307405_10018184
366 Ga0307405_10111439
367 Ga0307410_10032489
368 Ga0307406_10144127
369 Ga0307412_10057837
370 Ga0307412_10081929
371 Ga0307412_10099094
372 Ga0307409_100010888
373 Ga0307416_100027595
374 Ga0307414_10160114
375 Ga0307510_10001830
376 Ga0307510_10006665
377 Ga0395900_0111100
378 Ga0395898_0003940
379 Ga0395898_0152513
380 Ga0395905_0021839
381 Ga0395901_0209716
382 Ga0400483_050773
383 Ga0400483_228778
384 Ga0436365_0350974
385 Ga0436365_0529637
386 Ga0439442_000222
387 Ga0450920_011431
388 Ga0466969_0006673
389 Ga0466966_0001111
390 Ga0466963_0071364
391 Ga0466963_0104189
392 Ga0466963_0124482
393 Ga0466964_0077666
394 Ga0466970_0011346
395 Ga0466957_0021251
396 Ga0466957_0050816
397 Ga0466960_0036297
398 Ga0466959_0261813
399 Ga0466958_0011689
400 Ga0495592_0012143
401 Ga0495592_0021846
402 Ga0495603_0037609
403 Ga0495629_0022084
404 Ga0495638_0034269
405 Ga0495651_0011481
406 Ga0495662_0026156
407 Ga0495664_0008139
408 Ga0495628_0022124
409 Ga0495648_0012214
410 Ga0495652_0068352
411 Ga0495587_0007853
412 Ga0495622_0017027
413 Ga0495656_0075044
414 Ga0495634_0004085
415 Ga0495634_0023127
416 Ga0495635_0013220
417 Ga0495657_0006152
418 Ga0495646_0004549
419 Ga0495613_0004702
420 Ga0495581_0008192
421 Ga0495581_0020879
422 Ga0495672_0004499
423 Ga0495676_0002748
424 Ga0495676_0005153
425 Ga0495676_0013895
426 Ga0495683_0000713
427 Ga0495687_010764
428 Ga0495675_0019871
429 Ga0495677_0020981
430 Ga0495673_0000928
431 Ga0495684_0069526
432 Ga0495593_0000705
433 Ga0495602_0030086
434 Ga0495614_0001537
435 Ga0496102_0077307
436 Ga0496102_0127765
437 Ga0496102_0233861
438 Ga0496105_0051063
439 Ga0496107_0073519
440 Ga0496107_0242694
441 Ga0496108_0148078
442 Ga0496109_0205371
443 Ga0496109_0228143
444 Ga0496109_0369205
445 Ga0496110_0023767
446 Ga0496110_0272628
447 Ga0496111_0007516
448 Ga0496111_0125071
449 Ga0496113_0092513
450 Ga0496118_0009904
451 Ga0496119_0000497
452 Ga0496119_0063701
453 Ga0496120_0002351
454 Ga0496126_0121873
455 Ga0501031_0000401
456 Ga0501032_0009639
457 Ga0501032_0041228
458 Ga0501033_0008474
459 Ga0501034_0000572
460 Ga0501034_0006709
461 Ga0501034_0007174
462 Ga0501034_0094332
463 Ga0501036_0001930
464 Ga0501036_0110058
465 Ga0501036_0175504
466 Ga0501037_0007645
467 Ga0501037_0058334
468 Ga0501040_0001881
469 Ga0501040_0022567
470 Ga0501040_0120132
471 Ga0501041_0000925
472 Ga0501042_0073181
473 Ga0501046_0001150
474 Ga0501046_0021349
475 Ga0501047_0031575
476 Ga0501047_0036693
477 Ga0501048_0007676
478 Ga0501048_0136595
479 Ga0501069_0007704
480 Ga0501072_0244955
481 Ga0501073_0082673
482 Ga0501074_0052567
483 Ga0501074_0077604
484 Ga0501075_0023046
485 Ga0501075_0075642
486 Ga0501076_0001663
487 Ga0501076_0150830
488 Ga0501079_0076340
489 Ga0501080_0025496
490 Ga0501081_0043523
491 Ga0501083_0051142
492 Ga0501035_0001907
493 Ga0501035_0012547
494 Ga0501035_0034628
495 Ga0501035_0219025
496 Ga0501044_0004131
497 Ga0501044_0004440
498 Ga0501044_0015652
499 Ga0501045_0005235
500 Ga0501045_0208719
501 nmdc:mga0qj67_9688_c1
502 nmdc:mga06r32_332417_c1
503 Ga0500643_005366
504 Ga0500640_025300
505 Ga0500641_0000705
506 Ga0500616_0001638
507 Ga0500645_000031
508 Ga0501084_0137183
509 Ga0501082_0005055
510 Ga0466962_0013222
511 Ga0530510_0001996
512 Ga0530510_0006214
513 2935394905
514 2501945519
515 2506864625
516 2515495373
517 2515720011
518 2515759113
519 2515852894
520 2516092182
521 2583149677
522 2585319552
523 2623585330
524 2626635183
525 2643942034
526 2644389682
527 2644429117
528 2644444441
529 2644487371
530 2645719960
531 2645726833
532 2676473410
533 2676482703
534 2731909272
535 2772645390
536 2774904975
537 2784589674
538 2812363113
539 2827631920
540 2831937197
541 2832010106
542 2837268844
543 2852640382
544 2855675937
545 2855677132
546 2855687506
547 2856859258
548 2857289386
549 2857480636
550 2857484810
551 2857634046
552 2857712568
553 2858850167
554 2858872206
555 2858884811
556 2858892178
557 2858900280
558 2858902670
559 2861527568
560 2862293469
561 2862709744
562 2866068067
563 2866614762
564 2867306000
565 2867510633
566 2869053669
567 2869064309
568 2869072275
569 2870802364
570 2870804446
571 2873315695
572 2880494906
573 2880497437
574 2891326819
575 2891398823
576 2895437993
577 2899367112
578 2902584557
579 2902839480
580 2918505769
581 2919713570
582 2929226001
583 2929232661
584 2945942913
585 2946062623
586 2956940095
587 2974319915
588 2984523784
589 2990093358
590 2996221993
591 3001121513
592 3006326945
593 649812874
594 8003832426
595 8003863170
596 8003875562
597 8025418303
598 8025532378
599 8054704252
600 8054731653
601 8054739907
602 8055158874
603 8055413515
604 8057570382

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13520

AA_permease_2

Amino acid permease

20

432

0.84

PF00324

AA_permease

Amino acid permease

24

378

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
6f2g-assembly1.cif.gz_A bacterial asc transporter crystal structure in open to in conformation 0.7457 27 341
5oqt-assembly1.cif.gz_A crystal structure of a bacterial cationic amino acid transporter (cat) homologue 0.739 25 343
6f34-assembly1.cif.gz_A crystal structure of a bacterial cationic amino acid transporter (cat) homologue bound to arginine. 0.733 23 343
6li9-assembly1.cif.gz_B heteromeric amino acid transporter b0,+at-rbat complex bound with arginine 0.7298 30 343
6irt-assembly1.cif.gz_B human lat1-4f2hc complex bound with bch 0.7266 30 341
ID Description Score Start End Superfamily
af_P9WQM3_13_431_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8149 24 358 1.20.1740.10
af_Q4CYX3_37_503_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7498 25 348 1.20.1740.10
af_Q2FYJ4_6_440_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7457 35 354 1.20.1740.10
af_Q22397_14_464_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7417 30 343 1.20.1740.10
af_P71892_30_474_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7411 25 343 1.20.1740.10
ID Description Score Start End GO Terms
AF-A0A3A4BDU4-F1-model_v4 APC family permease 0.8384 24 355 GO:0005886
GO:0022857
AF-A0A4D4J201-F1-model_v4 Putative transporter 0.8154 24 360 GO:0005886
GO:0022857
AF-A0A4R0ISD9-F1-model_v4 APC family permease 0.815 24 357 GO:0005886
GO:0022857
AF-A0A7K1FLA3-F1-model_v4 Amino acid permease 0.8144 25 345 GO:0005886
GO:0022857
AF-A0A1C3NSU8-F1-model_v4 Amino acid permease-associated protein 0.8087 141 349 GO:0016020
GO:0055085

Map