F395687

General Info

Members Datasets Scaffolds Average Seq Length
301 174 602 338

Family's Representative Sequence

Representative Sequence 3300003781|Ga0055536_1000332|Ga0055536_100033212
Length 387
Sequence MTIQWRMRRSRGLTPVDPITIVRRIAAGQGGGWIFRRDPPPAPFPKSIPLDAVTVAESRRKGEVEPLIRLARDDMAVVDALIVERMQSDVPVIPMLADHIVAAGGKRLRPLLTVAAARAVGAPNGMEAAVRLAASVEFIHTATLLHDDIVDASDLRRGKVAAHLIWGAPSSVLVGDFLFARAFELMVETGQMRALGILARASSVISEGEVLQLTRAHDLGLDQDTYLQIISAKTAELFAAAAESGAVGAGADETAVQALRAYGLNLGLAFQLADDALDYGGQAADLGKNTGDDFREGKVTLPLLLAAARTKGHDDGFWERTINKGERHEDDFKRARELVVGAGAVGATLDVAWDYADLAKAALAPLADSEWKTALELLADFAVSRVA

Samples

Sample ID Description Type Environment
1 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
2 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
3 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
4 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
5 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
15 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
16 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
22 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
23 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
33 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
34 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
35 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
36 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
37 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
39 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
43 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
44 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
48 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
49 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
50 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
51 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
52 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
54 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
87 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
88 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
89 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
90 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
91 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
92 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
93 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
94 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
95 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
96 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
97 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
98 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
99 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
100 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
101 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
102 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
103 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
104 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
105 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
106 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
107 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
108 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
109 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
110 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
111 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
112 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
113 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
114 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
115 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
116 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
117 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
118 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
119 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
120 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
121 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
122 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
123 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
124 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
125 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
126 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
127 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
128 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
129 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
130 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
131 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
132 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
133 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
134 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
135 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
136 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
137 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
138 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
139 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
145 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
146 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
147 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
148 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
149 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
150 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
151 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
152 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
153 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
154 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
155 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
156 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
157 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
158 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
159 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
160 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
161 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
162 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
163 3300053729 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere Metagenome Endosphere
164 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
165 2643221574 Brevundimonas sp. Root608 Isolate Unclassified
166 2643221598 Phenylobacterium sp. Root700 Isolate Unclassified
167 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
168 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
169 2643221663 Brevundimonas sp. Root1279 Isolate Unclassified
170 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
171 2643221699 Brevundimonas sp. Root1423 Isolate Unclassified
172 2928972540 Brevundimonas sp. 1080 Isolate Rhizosphere
173 2941485952 Brevundimonas faecalis 2814 Isolate Rhizosphere
174 2977240413 Brevundimonas vesicularis SORGH_AS 431 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.35
Metatranscriptomes 1
Isolates 3.65

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.96
Nodule 0
Rhizoplane 2.33
Rhizosphere 75.08
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055536_1000332 3300003781 Bacteria 34913
2 Ga0006562J51391_1096455 3300003578 Bacteria 3170
3 Ga0006562J51391_1096456 3300003578 Bacteria 3780
4 Ga0055530_10000399 3300003791 Bacteria 38893
5 Ga0055531_10003185 3300003794 Bacteria 10547
6 Ga0055531_10015761 3300003794 Bacteria 3306
7 Ga0065165_1001439 3300005262 Bacteria 25795
8 Ga0065165_1009405 3300005262 Bacteria 4386
9 Ga0070658_10112327 3300005327 Bacteria 2258
10 Ga0068869_100168845 3300005334 Bacteria 1708
11 Ga0070680_100120571 3300005336 Bacteria 2189
12 Ga0070680_100169127 3300005336 Bacteria 1839
13 Ga0070660_100040916 3300005339 Bacteria 3530
14 Ga0070691_10024982 3300005341 Bacteria 2780
15 Ga0070668_100000072 3300005347 Bacteria 62530
16 Ga0070668_100000636 3300005347 Bacteria 23603
17 Ga0070668_100003116 3300005347 Bacteria 12248
18 Ga0070668_100005244 3300005347 Bacteria 9619
19 Ga0070668_100012927 3300005347 Bacteria 6217
20 Ga0070668_100034055 3300005347 Bacteria 3882
21 Ga0070669_100010423 3300005353 Bacteria 6600
22 Ga0070671_100006479 3300005355 Bacteria 9359
23 Ga0070671_100022617 3300005355 Bacteria 5135
24 Ga0070659_100010066 3300005366 Bacteria 6962
25 Ga0070659_100086813 3300005366 Bacteria 2504
26 Ga0070667_100000078 3300005367 Bacteria 119527
27 Ga0070667_100001627 3300005367 Bacteria 20117
28 Ga0070667_100014646 3300005367 Bacteria 6480
29 Ga0070667_100075407 3300005367 Bacteria 2879
30 Ga0070681_10014582 3300005458 Bacteria 7822
31 Ga0070679_100045267 3300005530 Bacteria 4385
32 Ga0070679_100272059 3300005530 Bacteria 1648
33 Ga0068853_100077500 3300005539 Bacteria 2903
34 Ga0068853_100095400 3300005539 Bacteria 2623
35 Ga0070665_100000338 3300005548 Bacteria 71282
36 Ga0070665_100001281 3300005548 Bacteria 30110
37 Ga0070665_100003037 3300005548 Bacteria 18081
38 Ga0070665_100034572 3300005548 Bacteria 5082
39 Ga0070665_100047297 3300005548 Bacteria 4318
40 Ga0070665_100362411 3300005548 Bacteria 1456
41 Ga0068855_100036410 3300005563 Bacteria 5857
42 Ga0068855_100045318 3300005563 Bacteria 5201
43 Ga0068855_100082176 3300005563 Bacteria 3734
44 Ga0068855_100313341 3300005563 Bacteria 1735
45 Ga0068855_100498359 3300005563 Bacteria 1324
46 Ga0070664_100012067 3300005564 Bacteria 7021
47 Ga0068857_100064909 3300005577 Bacteria 3246
48 Ga0068854_100179294 3300005578 Bacteria 1654
49 Ga0068856_100148560 3300005614 Bacteria 2351
50 Ga0068852_100083151 3300005616 Bacteria 2846
51 Ga0068859_100047321 3300005617 Bacteria 4321
52 Ga0068859_100047535 3300005617 Bacteria 4311
53 Ga0068864_100000052 3300005618 Bacteria 133777
54 Ga0068864_100000150 3300005618 Bacteria 65989
55 Ga0068864_100007970 3300005618 Bacteria 8730
56 Ga0068864_100012420 3300005618 Bacteria 7043
57 Ga0068861_100172006 3300005719 Bacteria 1796
58 Ga0068863_100000019 3300005841 Bacteria 205585
59 Ga0068863_100000438 3300005841 Bacteria 42054
60 Ga0068863_100110553 3300005841 Bacteria 2617
61 Ga0068863_100141385 3300005841 Bacteria 2300
62 Ga0068858_100000040 3300005842 Bacteria 135911
63 Ga0068858_100007244 3300005842 Bacteria 10750
64 Ga0068860_100001025 3300005843 Bacteria 30770
65 Ga0068860_100001695 3300005843 Bacteria 23543
66 Ga0068860_100024415 3300005843 Bacteria 5841
67 Ga0068862_100000497 3300005844 Bacteria 41807
68 Ga0068862_100028759 3300005844 Bacteria 4681
69 Ga0068862_100036333 3300005844 Bacteria 4176
70 Ga0075368_10007953 3300006042 Bacteria 3761
71 Ga0075364_10003489 3300006051 Bacteria 8953
72 Ga0075367_10013491 3300006178 Bacteria 4394
73 Ga0068865_100012014 3300006881 Bacteria 5441
74 Ga0097620_100047320 3300006931 Bacteria 4321
75 Ga0097620_100047535 3300006931 Bacteria 4311
76 Ga0105250_10081960 3300009092 Bacteria 1308
77 Ga0105240_10010288 3300009093 Bacteria 13171
78 Ga0105240_10052814 3300009093 Bacteria 5106
79 Ga0105240_10068071 3300009093 Bacteria 4411
80 Ga0105240_10211427 3300009093 Bacteria 2267
81 Ga0105248_10000279 3300009177 Bacteria 60271
82 Ga0105248_10013690 3300009177 Bacteria 8928
83 Ga0105248_10027963 3300009177 Bacteria 6279
84 Ga0105248_10233151 3300009177 Bacteria 2072
85 Ga0105248_10259328 3300009177 Bacteria 1957
86 Ga0105238_10170327 3300009551 Bacteria 2153
87 Ga0105238_10278171 3300009551 Bacteria 1655
88 Ga0157373_10002515 3300013100 Bacteria 13961
89 Ga0157373_10007531 3300013100 Bacteria 8094
90 Ga0157371_10041606 3300013102 Bacteria 3278
91 Ga0157370_10040115 3300013104 Bacteria 4521
92 Ga0157369_10111398 3300013105 Bacteria 2909
93 Ga0163162_10084065 3300013306 Bacteria 3257
94 Ga0163162_10119464 3300013306 Bacteria 2739
95 Ga0163163_10008157 3300014325 Bacteria 9287
96 Ga0163163_10452759 3300014325 Bacteria 1344
97 Ga0163163_10559877 3300014325 Bacteria 1206
98 Ga0157379_10008336 3300014968 Bacteria 9006
99 Ga0157379_10169572 3300014968 Bacteria 1970
100 Ga0157376_10288830 3300014969 Bacteria 1548
101 Ga0213876_10000411 3300021384 Bacteria 35947
102 Ga0209026_1003137 3300025250 Bacteria 5624
103 Ga0209676_1000082 3300025292 Bacteria 280400
104 Ga0209758_1000431 3300025297 Bacteria 71115
105 Ga0209050_1000098 3300025298 Bacteria 236717
106 Ga0209050_1015962 3300025298 Bacteria 3108
107 Ga0209257_1000178 3300025304 Bacteria 160969
108 Ga0209257_1000221 3300025304 Bacteria 134870
109 Ga0207705_10016289 3300025909 Bacteria 5332
110 Ga0207707_10058192 3300025912 Bacteria 3363
111 Ga0207695_10000893 3300025913 Bacteria 54084
112 Ga0207695_10002054 3300025913 Bacteria 30785
113 Ga0207695_10013752 3300025913 Bacteria 9629
114 Ga0207695_10087681 3300025913 Bacteria 3134
115 Ga0207695_10175309 3300025913 Bacteria 2067
116 Ga0207660_10001705 3300025917 Bacteria 14736
117 Ga0207660_10041595 3300025917 Bacteria 3221
118 Ga0207660_10253907 3300025917 Bacteria 1388
119 Ga0207657_10010031 3300025919 Bacteria 9477
120 Ga0207652_10076710 3300025921 Bacteria 2915
121 Ga0207652_10171699 3300025921 Bacteria 1946
122 Ga0207650_10000014 3300025925 Bacteria 398063
123 Ga0207644_10000884 3300025931 Bacteria 18912
124 Ga0207644_10087585 3300025931 Bacteria 2314
125 Ga0207690_10002466 3300025932 Bacteria 11181
126 Ga0207706_10131725 3300025933 Bacteria 2199
127 Ga0207704_10002112 3300025938 Bacteria 8915
128 Ga0207711_10000732 3300025941 Bacteria 32211
129 Ga0207711_10004291 3300025941 Bacteria 12183
130 Ga0207711_10016807 3300025941 Bacteria 6076
131 Ga0207711_10050651 3300025941 Bacteria 3555
132 Ga0207711_10055212 3300025941 Bacteria 3411
133 Ga0207711_10089888 3300025941 Bacteria 2699
134 Ga0207679_10095555 3300025945 Bacteria 2310
135 Ga0207667_10109760 3300025949 Bacteria 2845
136 Ga0207667_10183130 3300025949 Bacteria 2150
137 Ga0207667_10235614 3300025949 Bacteria 1874
138 Ga0207667_10418352 3300025949 Bacteria 1364
139 Ga0207667_10431202 3300025949 Bacteria 1341
140 Ga0207712_10001962 3300025961 Bacteria 13498
141 Ga0207668_10000025 3300025972 Bacteria 131733
142 Ga0207668_10000564 3300025972 Bacteria 23278
143 Ga0207668_10002732 3300025972 Bacteria 10316
144 Ga0207668_10008395 3300025972 Bacteria 6154
145 Ga0207640_10142020 3300025981 Bacteria 1752
146 Ga0207658_10000285 3300025986 Bacteria 52920
147 Ga0207658_10001216 3300025986 Bacteria 20405
148 Ga0207658_10031621 3300025986 Bacteria 3760
149 Ga0207658_10038663 3300025986 Bacteria 3439
150 Ga0207703_10001216 3300026035 Bacteria 24075
151 Ga0207703_10004106 3300026035 Bacteria 12020
152 Ga0207703_10008988 3300026035 Bacteria 7869
153 Ga0207639_10050929 3300026041 Bacteria 3147
154 Ga0207702_10232711 3300026078 Bacteria 1723
155 Ga0207641_10000005 3300026088 Bacteria 470841
156 Ga0207641_10002976 3300026088 Bacteria 15332
157 Ga0207641_10012513 3300026088 Bacteria 6954
158 Ga0207641_10034772 3300026088 Bacteria 4194
159 Ga0207676_10000069 3300026095 Bacteria 104526
160 Ga0207676_10000130 3300026095 Bacteria 66147
161 Ga0207676_10002276 3300026095 Bacteria 13775
162 Ga0207676_10199593 3300026095 Bacteria 1766
163 Ga0207674_10097313 3300026116 Bacteria 2927
164 Ga0207675_100204467 3300026118 Bacteria 1897
165 Ga0207675_100493360 3300026118 Bacteria 1218
166 Ga0207698_10136494 3300026142 Bacteria 2105
167 Ga0209999_1004004 3300027543 Bacteria 2652
168 Ga0268266_10000003 3300028379 Bacteria 1701703
169 Ga0268266_10000533 3300028379 Bacteria 53233
170 Ga0268266_10005276 3300028379 Bacteria 12133
171 Ga0268265_10000695 3300028380 Bacteria 33066
172 Ga0268265_10005664 3300028380 Bacteria 8534
173 Ga0268265_10012523 3300028380 Bacteria 5749
174 Ga0268265_10057548 3300028380 Bacteria 2963
175 Ga0268264_10000029 3300028381 Bacteria 419246
176 Ga0268264_10000199 3300028381 Bacteria 122707
177 Ga0268264_10043654 3300028381 Bacteria 3717
178 Ga0268264_10122857 3300028381 Bacteria 2291
179 Ga0265337_1037597 3300028556 Bacteria 1407
180 Ga0265334_10025594 3300028573 Bacteria 2388
181 Ga0307517_10003704 3300028786 Bacteria 23747
182 Ga0307517_10070728 3300028786 Bacteria 3138
183 Ga0265338_10269637 3300028800 Bacteria 1248
184 Ga0265760_10018855 3300031090 Bacteria 1988
185 Ga0265340_10048032 3300031247 Bacteria 2076
186 Ga0265327_10001443 3300031251 Bacteria 29963
187 Ga0265327_10002949 3300031251 Bacteria 17007
188 Ga0307513_10000303 3300031456 Bacteria 70737
189 Ga0307513_10003525 3300031456 Bacteria 21166
190 Ga0307513_10023952 3300031456 Bacteria 7113
191 Ga0307516_10000808 3300031730 Bacteria 42952
192 Ga0307413_10061099 3300031824 Bacteria 2323
193 Ga0307413_10080492 3300031824 Bacteria 2086
194 Ga0307413_10162014 3300031824 Bacteria 1572
195 Ga0307413_10192315 3300031824 Bacteria 1466
196 Ga0307410_10010018 3300031852 Bacteria 5348
197 Ga0307406_10000721 3300031901 Bacteria 18677
198 Ga0307406_10108108 3300031901 Bacteria 1909
199 Ga0307407_10042974 3300031903 Bacteria 2538
200 Ga0307414_10082130 3300032004 Bacteria 2362
201 Ga0307510_10072384 3300033180 Bacteria 3425
202 Ga0307510_10138708 3300033180 Bacteria 2082
203 Ga0373926_0059544 3300035083 Bacteria 1390
204 Ga0373944_0012341 3300035089 Bacteria 2352
205 Ga0373936_0007282 3300035113 Bacteria 4163
206 Ga0373927_0003876 3300035695 Bacteria 10607
207 Ga0373925_0000247 3300037068 Bacteria 57283
208 Ga0373925_0367855 3300037068 Bacteria 1169
209 Ga0395899_0003238 3300037312 Bacteria 12916
210 Ga0395900_0000016 3300037418 Bacteria 382407
211 Ga0395900_0091256 3300037418 Bacteria 3130
212 Ga0395900_0113893 3300037418 Bacteria 2776
213 Ga0395900_0347923 3300037418 Bacteria 1456
214 Ga0395898_0171701 3300037466 Bacteria 2072
215 Ga0395898_0520789 3300037466 Bacteria 1130
216 Ga0395905_0014635 3300037471 Bacteria 7483
217 Ga0395905_0231101 3300037471 Bacteria 1729
218 Ga0395901_0000028 3300038443 Bacteria 242653
219 Ga0395901_0071933 3300038443 Bacteria 3604
220 Ga0395901_0429490 3300038443 Bacteria 1353
221 Ga0436365_0209892 3300039437 Bacteria 72774
222 Ga0436365_0466878 3300039437 Bacteria 5942
223 Ga0436365_1192862 3300039437 Bacteria 1463
224 Ga0436365_1385297 3300039437 Bacteria 5229
225 Ga0466972_0110250 3300044658 Bacteria 1301
226 Ga0495650_0048095 3300046471 Bacteria 1780
227 Ga0495585_0164527 3300046492 Bacteria 1149
228 Ga0495583_0000001 3300046506 Bacteria 811973
229 Ga0495583_0045310 3300046506 Bacteria 2035
230 Ga0495606_0119033 3300046507 Bacteria 1583
231 Ga0495642_0021568 3300046528 Bacteria 2534
232 Ga0495654_0099097 3300046530 Bacteria 1344
233 Ga0495597_0020241 3300046542 Bacteria 3101
234 Ga0495645_0037979 3300046543 Bacteria 3511
235 Ga0495622_0015583 3300046557 Bacteria 3532
236 Ga0495633_0001747 3300046558 Bacteria 16154
237 Ga0495668_0200416 3300046616 Bacteria 1093
238 Ga0495669_0000004 3300046684 Bacteria 208878
239 Ga0495669_0001267 3300046684 Bacteria 10455
240 Ga0495669_0013061 3300046684 Bacteria 3538
241 Ga0495669_0127103 3300046684 Bacteria 1198
242 Ga0495613_0003587 3300046689 Bacteria 11631
243 Ga0495677_0042240 3300047445 Bacteria 1670
244 Ga0495593_0034433 3300047673 Bacteria 2755
245 Ga0496102_0019808 3300048905 Bacteria 5930
246 Ga0496106_0144702 3300048909 Bacteria 1872
247 Ga0496109_0038040 3300048912 Bacteria 4349
248 Ga0496115_0001627 3300048918 Bacteria 16170
249 Ga0496115_0001955 3300048918 Bacteria 14704
250 Ga0496115_0086988 3300048918 Bacteria 2550
251 Ga0496115_0247567 3300048918 Bacteria 1468
252 Ga0496117_0032518 3300048920 Bacteria 3962
253 Ga0496118_0008572 3300048921 Bacteria 10526
254 Ga0496119_0022339 3300048922 Bacteria 4533
255 Ga0496121_0000067 3300048924 Bacteria 261543
256 Ga0496122_0061851 3300048925 Bacteria 2745
257 Ga0496123_0001927 3300048926 Bacteria 27057
258 Ga0496125_0000462 3300048928 Bacteria 72795
259 Ga0501032_0081494 3300049569 Bacteria 2153
260 Ga0501032_0191174 3300049569 Bacteria 1338
261 Ga0501033_0002601 3300049570 Bacteria 15218
262 Ga0501033_0059585 3300049570 Bacteria 2819
263 Ga0501034_0176586 3300049571 Bacteria 2102
264 Ga0501037_0013817 3300049573 Bacteria 5949
265 Ga0501037_0032240 3300049573 Bacteria 3869
266 Ga0501047_0041041 3300049581 Bacteria 4472
267 Ga0501044_0002366 3300049823 Bacteria 21482
268 Ga0501044_0010238 3300049823 Bacteria 10183
269 nmdc:mga03n38_39724_c1 3300050490 Bacteria 2041
270 nmdc:mga00v17_2835_c1 3300050491 Bacteria 8904
271 Ga0495612_0059052 3300053078 Bacteria 1586
272 Ga0500635_0000099 3300053080 Bacteria 52195
273 Ga0500644_0000939 3300053088 Bacteria 9215
274 Ga0500647_0008351 3300053091 Bacteria 4492
275 Ga0500651_0102368 3300053093 Bacteria 1755
276 Ga0500651_0162388 3300053093 Bacteria 1335
277 Ga0500641_0001611 3300053096 Bacteria 8041
278 Ga0500556_0048547 3300053104 Bacteria 1527
279 Ga0500595_002821 3300053119 Bacteria 8360
280 Ga0500608_014016 3300053122 Bacteria 3568
281 Ga0500614_016896 3300053123 Bacteria 1643
282 Ga0500658_0119039 3300053134 Bacteria 1169
283 Ga0500559_0000010 3300053136 Bacteria 165569
284 Ga0500559_0062706 3300053136 Bacteria 1660
285 Ga0500603_048899 3300053150 Bacteria 1151
286 Ga0500638_041633 3300053162 Bacteria 2231
287 Ga0500636_0051325 3300053177 Bacteria 2425
288 Ga0500637_0036777 3300053178 Bacteria 2749
289 Ga0500625_034527 3300053729 Bacteria 2398
290 Ga0500645_005129 3300053730 Bacteria 4885
291 2643884968 2643221574 Bacteria 2789653
292 2643998965 2643221598 Bacteria 4578346
293 2644086389 2643221614 Bacteria 4260023
294 2644344887 2643221661 Bacteria 4267604
295 2644352249 2643221663 Bacteria 3425771
296 2644367630 2643221666 Bacteria 4265935
297 2644547282 2643221699 Bacteria 5731501
298 2644550897 2643221699 Bacteria 5731501
299 2928975514 2928972540 Bacteria 3058286
300 2941488276 2941485952 Bacteria 3591484
301 2977241545 2977240413 Bacteria 3191065
302 Ga0055536_1000332
303 Ga0006562J51391_1096455
304 Ga0006562J51391_1096456
305 Ga0055530_10000399
306 Ga0055531_10003185
307 Ga0055531_10015761
308 Ga0065165_1001439
309 Ga0065165_1009405
310 Ga0070658_10112327
311 Ga0068869_100168845
312 Ga0070680_100120571
313 Ga0070680_100169127
314 Ga0070660_100040916
315 Ga0070691_10024982
316 Ga0070668_100000072
317 Ga0070668_100000636
318 Ga0070668_100003116
319 Ga0070668_100005244
320 Ga0070668_100012927
321 Ga0070668_100034055
322 Ga0070669_100010423
323 Ga0070671_100006479
324 Ga0070671_100022617
325 Ga0070659_100010066
326 Ga0070659_100086813
327 Ga0070667_100000078
328 Ga0070667_100001627
329 Ga0070667_100014646
330 Ga0070667_100075407
331 Ga0070681_10014582
332 Ga0070679_100045267
333 Ga0070679_100272059
334 Ga0068853_100077500
335 Ga0068853_100095400
336 Ga0070665_100000338
337 Ga0070665_100001281
338 Ga0070665_100003037
339 Ga0070665_100034572
340 Ga0070665_100047297
341 Ga0070665_100362411
342 Ga0068855_100036410
343 Ga0068855_100045318
344 Ga0068855_100082176
345 Ga0068855_100313341
346 Ga0068855_100498359
347 Ga0070664_100012067
348 Ga0068857_100064909
349 Ga0068854_100179294
350 Ga0068856_100148560
351 Ga0068852_100083151
352 Ga0068859_100047321
353 Ga0068859_100047535
354 Ga0068864_100000052
355 Ga0068864_100000150
356 Ga0068864_100007970
357 Ga0068864_100012420
358 Ga0068861_100172006
359 Ga0068863_100000019
360 Ga0068863_100000438
361 Ga0068863_100110553
362 Ga0068863_100141385
363 Ga0068858_100000040
364 Ga0068858_100007244
365 Ga0068860_100001025
366 Ga0068860_100001695
367 Ga0068860_100024415
368 Ga0068862_100000497
369 Ga0068862_100028759
370 Ga0068862_100036333
371 Ga0075368_10007953
372 Ga0075364_10003489
373 Ga0075367_10013491
374 Ga0068865_100012014
375 Ga0097620_100047320
376 Ga0097620_100047535
377 Ga0105250_10081960
378 Ga0105240_10010288
379 Ga0105240_10052814
380 Ga0105240_10068071
381 Ga0105240_10211427
382 Ga0105248_10000279
383 Ga0105248_10013690
384 Ga0105248_10027963
385 Ga0105248_10233151
386 Ga0105248_10259328
387 Ga0105238_10170327
388 Ga0105238_10278171
389 Ga0157373_10002515
390 Ga0157373_10007531
391 Ga0157371_10041606
392 Ga0157370_10040115
393 Ga0157369_10111398
394 Ga0163162_10084065
395 Ga0163162_10119464
396 Ga0163163_10008157
397 Ga0163163_10452759
398 Ga0163163_10559877
399 Ga0157379_10008336
400 Ga0157379_10169572
401 Ga0157376_10288830
402 Ga0213876_10000411
403 Ga0209026_1003137
404 Ga0209676_1000082
405 Ga0209758_1000431
406 Ga0209050_1000098
407 Ga0209050_1015962
408 Ga0209257_1000178
409 Ga0209257_1000221
410 Ga0207705_10016289
411 Ga0207707_10058192
412 Ga0207695_10000893
413 Ga0207695_10002054
414 Ga0207695_10013752
415 Ga0207695_10087681
416 Ga0207695_10175309
417 Ga0207660_10001705
418 Ga0207660_10041595
419 Ga0207660_10253907
420 Ga0207657_10010031
421 Ga0207652_10076710
422 Ga0207652_10171699
423 Ga0207650_10000014
424 Ga0207644_10000884
425 Ga0207644_10087585
426 Ga0207690_10002466
427 Ga0207706_10131725
428 Ga0207704_10002112
429 Ga0207711_10000732
430 Ga0207711_10004291
431 Ga0207711_10016807
432 Ga0207711_10050651
433 Ga0207711_10055212
434 Ga0207711_10089888
435 Ga0207679_10095555
436 Ga0207667_10109760
437 Ga0207667_10183130
438 Ga0207667_10235614
439 Ga0207667_10418352
440 Ga0207667_10431202
441 Ga0207712_10001962
442 Ga0207668_10000025
443 Ga0207668_10000564
444 Ga0207668_10002732
445 Ga0207668_10008395
446 Ga0207640_10142020
447 Ga0207658_10000285
448 Ga0207658_10001216
449 Ga0207658_10031621
450 Ga0207658_10038663
451 Ga0207703_10001216
452 Ga0207703_10004106
453 Ga0207703_10008988
454 Ga0207639_10050929
455 Ga0207702_10232711
456 Ga0207641_10000005
457 Ga0207641_10002976
458 Ga0207641_10012513
459 Ga0207641_10034772
460 Ga0207676_10000069
461 Ga0207676_10000130
462 Ga0207676_10002276
463 Ga0207676_10199593
464 Ga0207674_10097313
465 Ga0207675_100204467
466 Ga0207675_100493360
467 Ga0207698_10136494
468 Ga0209999_1004004
469 Ga0268266_10000003
470 Ga0268266_10000533
471 Ga0268266_10005276
472 Ga0268265_10000695
473 Ga0268265_10005664
474 Ga0268265_10012523
475 Ga0268265_10057548
476 Ga0268264_10000029
477 Ga0268264_10000199
478 Ga0268264_10043654
479 Ga0268264_10122857
480 Ga0265337_1037597
481 Ga0265334_10025594
482 Ga0307517_10003704
483 Ga0307517_10070728
484 Ga0265338_10269637
485 Ga0265760_10018855
486 Ga0265340_10048032
487 Ga0265327_10001443
488 Ga0265327_10002949
489 Ga0307513_10000303
490 Ga0307513_10003525
491 Ga0307513_10023952
492 Ga0307516_10000808
493 Ga0307413_10061099
494 Ga0307413_10080492
495 Ga0307413_10162014
496 Ga0307413_10192315
497 Ga0307410_10010018
498 Ga0307406_10000721
499 Ga0307406_10108108
500 Ga0307407_10042974
501 Ga0307414_10082130
502 Ga0307510_10072384
503 Ga0307510_10138708
504 Ga0373926_0059544
505 Ga0373944_0012341
506 Ga0373936_0007282
507 Ga0373927_0003876
508 Ga0373925_0000247
509 Ga0373925_0367855
510 Ga0395899_0003238
511 Ga0395900_0000016
512 Ga0395900_0091256
513 Ga0395900_0113893
514 Ga0395900_0347923
515 Ga0395898_0171701
516 Ga0395898_0520789
517 Ga0395905_0014635
518 Ga0395905_0231101
519 Ga0395901_0000028
520 Ga0395901_0071933
521 Ga0395901_0429490
522 Ga0436365_0209892
523 Ga0436365_0466878
524 Ga0436365_1192862
525 Ga0436365_1385297
526 Ga0466972_0110250
527 Ga0495650_0048095
528 Ga0495585_0164527
529 Ga0495583_0000001
530 Ga0495583_0045310
531 Ga0495606_0119033
532 Ga0495642_0021568
533 Ga0495654_0099097
534 Ga0495597_0020241
535 Ga0495645_0037979
536 Ga0495622_0015583
537 Ga0495633_0001747
538 Ga0495668_0200416
539 Ga0495669_0000004
540 Ga0495669_0001267
541 Ga0495669_0013061
542 Ga0495669_0127103
543 Ga0495613_0003587
544 Ga0495677_0042240
545 Ga0495593_0034433
546 Ga0496102_0019808
547 Ga0496106_0144702
548 Ga0496109_0038040
549 Ga0496115_0001627
550 Ga0496115_0001955
551 Ga0496115_0086988
552 Ga0496115_0247567
553 Ga0496117_0032518
554 Ga0496118_0008572
555 Ga0496119_0022339
556 Ga0496121_0000067
557 Ga0496122_0061851
558 Ga0496123_0001927
559 Ga0496125_0000462
560 Ga0501032_0081494
561 Ga0501032_0191174
562 Ga0501033_0002601
563 Ga0501033_0059585
564 Ga0501034_0176586
565 Ga0501037_0013817
566 Ga0501037_0032240
567 Ga0501047_0041041
568 Ga0501044_0002366
569 Ga0501044_0010238
570 nmdc:mga03n38_39724_c1
571 nmdc:mga00v17_2835_c1
572 Ga0495612_0059052
573 Ga0500635_0000099
574 Ga0500644_0000939
575 Ga0500647_0008351
576 Ga0500651_0102368
577 Ga0500651_0162388
578 Ga0500641_0001611
579 Ga0500556_0048547
580 Ga0500595_002821
581 Ga0500608_014016
582 Ga0500614_016896
583 Ga0500658_0119039
584 Ga0500559_0000010
585 Ga0500559_0062706
586 Ga0500603_048899
587 Ga0500638_041633
588 Ga0500636_0051325
589 Ga0500637_0036777
590 Ga0500625_034527
591 Ga0500645_005129
592 2643884968
593 2643998965
594 2644086389
595 2644344887
596 2644352249
597 2644367630
598 2644547282
599 2644550897
600 2928975514
601 2941488276
602 2977241545

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00348

polyprenyl_synt

Polyprenyl synthetase

90

339

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
4jxn-assembly1.cif.gz_A-2 crystal structure of polyprenyl synthase isp_b (target efi-509198) from roseobacter denitrificans 0.9545 15 336
3wjn-assembly1.cif.gz_B crystal structure of octaprenyl pyrophosphate synthase from escherichia coli with farnesyl s-thiol-pyrophosphate (fspp) 0.953 16 334
3oyr-assembly1.cif.gz_B crystal structure of polyprenyl synthase from caulobacter crescentus cb15 complexed with calcium and isoprenyl diphosphate 0.9455 10 338
4lob-assembly1.cif.gz_A-2 crystal structure of polyprenyl diphosphate synthase a1s_2732 (target efi-509223) from acinetobacter baumannii 0.9439 19 336
3wjo-assembly1.cif.gz_B crystal structure of octaprenyl pyrophosphate synthase from escherichia coli with isopentenyl pyrophosphate (ipp) 0.9429 14 334
ID Description Score Start End Superfamily
af_P0AD57_1_323_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9535 18 336 1.10.600.10
3oyrB00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9455 10 338 1.10.600.10
4lobA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9439 19 336 1.10.600.10
3oyrB00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.94 10 338 1.10.600.10
3oyrA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9375 11 336 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A2D8FKY7-F1-model_v4 Farnesyltranstransferase 0.9899 125 338 GO:0004659
GO:0008299
AF-A0A526RS86-F1-model_v4 Polyprenyl synthetase family protein 0.9822 117 338 GO:0004659
GO:0008299
AF-A0A2D8FKY7-F1-model_v4 Farnesyltranstransferase 0.9808 125 338 GO:0004659
GO:0008299
AF-A0A382MHH3-F1-model_v4 Polyprenyl synthetase 0.9781 143 338 GO:0004659
GO:0008299
AF-A0A3S1KS72-F1-model_v4 Polyprenyl synthetase family protein 0.9747 143 338 GO:0004659
GO:0008299

Map