F389895

General Info

Members Datasets Scaffolds Average Seq Length
290 169 248 376

Family's Representative Sequence

Representative Sequence 3300041404|Ga0439436_0004578|Ga0439436_0004578_1215_2369
Length 384
Sequence MSGGVDSSVAALLLRDAGEPCAGLFMQNWADDDAQDSASAAEDRKPKAAGSNCRAEDDRRDAVAVCGRLGLPIHFRDFSREYWDSVFEHFLAEYAAGRTPNPDVLCNREIKFKHFLDAAHELGAEFIATGHYARVEHGGGGHRLLRAADRGKDQSYFLHQLGQAQLAATRFPLGGLIKTDVRAMAQAAGLPTAAKKDSTGICFIGERDFREFLARYLPARAGEIRAVDGERADGRVIGTHPGVFYFTLGQREGLNIGGVRGYEPAPWYVVGKDVPGNVLYVDQGSDSRWLRSQALWSERAHWIAGAPPTRRFACTAQTRYRQPDEACEVEVQDDGGLQVRFARPQRAVTPGQSLVLYDGEVCLGGAVIAATDAPLEHHLRVNAA

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2571042365 Lysobacter oryzae DSM 21044 Isolate Rhizosphere
3 2576861471 Stenotrophomonas rhizophila DSM 14405 Isolate Rhizosphere
4 2643221559 Lysobacter sp. Root559 Isolate Unclassified
5 2643221573 Lysobacter sp. Root604 Isolate Unclassified
6 2643221579 Pseudoxanthomonas sp. Root630 Isolate Unclassified
7 2643221581 Pseudoxanthomonas sp. Root65 Isolate Unclassified
8 2643221586 Lysobacter sp. Root667 Isolate Unclassified
9 2643221593 Lysobacter sp. Root690 Isolate Unclassified
10 2643221612 Lysobacter sp. Root76 Isolate Unclassified
11 2643221695 Lysobacter sp. Root494 Isolate Unclassified
12 2643221720 Lysobacter sp. Root916 Isolate Unclassified
13 2643221727 Lysobacter sp. Root96 Isolate Unclassified
14 2643221728 Lysobacter sp. Root983 Isolate Unclassified
15 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
16 2818991457 Xanthomonas translucens 569 Isolate Unclassified
17 2842757796 Stenotrophomonas sp. R-72406 Isolate Unclassified
18 2842780639 Pseudoxanthomonas sp. R-71986 Isolate Unclassified
19 2852649853 Stenotrophomonas sp. JAI102 Isolate Rhizosphere
20 2852684882 Xanthomonas sp. JAI131 Isolate Rhizosphere
21 2857442823 Stenotrophomonas sp. R-74235 Isolate Unclassified
22 2894414249 Luteimonas sp. LNNU 24178 Isolate Rhizosphere
23 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
24 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
25 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
26 2895525241 Pseudoxanthomonas sp. SGT-18 Isolate Rhizosphere
27 2919130084 Xanthomonas sp. 1678 Isolate Rhizosphere
28 2923516293 Pseudoxanthomonas mexicana SLBN-89 Isolate Rhizosphere
29 2929195423 Xanthomonas sp. R-73098 Hybrid assembly Isolate Unclassified
30 2939589442 Stenotrophomonas rhizophila 716 Isolate Rhizosphere
31 2939622612 Stenotrophomonas sp. 2619 Isolate Rhizosphere
32 2941471342 Luteibacter sp. 621 Isolate Unclassified
33 2941475908 Stenotrophomonas rhizophila 2680 Isolate Rhizosphere
34 2941489479 Lysobacter enzymogenes 2943 Isolate Rhizosphere
35 2974307012 Stenotrophomonas sp. SORGH_AS_0282 Isolate Unclassified
36 2977247770 Stenotrophomonas rhizophila SORGH_AS 457 Isolate Unclassified
37 2984514374 Stenotrophomonas sp. SORGH_AS282 Isolate Aerial Root
38 2995948881 Lysobacter enzymogenes B25 Isolate Unclassified
39 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
40 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
41 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
42 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
43 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
44 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
45 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
46 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
47 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
48 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
49 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
50 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
51 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
52 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
53 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
54 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
55 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
56 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
57 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
58 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
59 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
60 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
61 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
62 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
63 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
64 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
65 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
66 3300015689 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A02 Metagenome Rhizosphere
67 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
68 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
69 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
70 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
71 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
73 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
74 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
76 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
77 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
78 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
80 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
81 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
88 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
89 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
91 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
92 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
93 3300030735 Rhizosphere soil microbial communities in a healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 4 Metagenome Rhizosphere
94 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
95 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
96 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
97 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
98 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
99 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
100 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
101 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
102 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
103 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
104 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
105 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
106 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
107 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
108 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
109 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
110 3300041462 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_8 MetaG Metagenome Rhizoplane
111 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
112 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
113 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
114 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
115 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
116 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
117 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
118 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
119 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
120 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
121 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
122 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
123 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
124 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
125 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
126 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
127 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
128 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
129 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
130 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
131 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
132 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
133 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
134 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
135 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
136 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
137 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
138 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
139 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
140 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
141 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
142 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
143 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
144 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
145 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
146 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
147 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
148 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
149 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
150 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
151 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
152 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
153 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
154 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
155 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
156 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
157 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
158 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
159 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
160 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
161 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
162 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
163 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
164 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
165 8002869464 Pseudoxanthomonas helianthi 110414 Isolate Unclassified
166 8003014200 Lysobacter changpingensis Cm-3-T8 Isolate Rhizosphere
167 8021622325 Xanthomonas sp. LMG12462 Isolate Rhizosphere
168 8021626552 Xanthomonas sp. LMG12460 Isolate Rhizosphere
169 8021648035 Xanthomonas sp. LMG 12461 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 85.52
Metatranscriptomes 0
Isolates 14.48

Biome Distribution

Category Percentage (%)
Aerial Root 0.34
Bulb 0
Endosphere 28.28
Nodule 0
Rhizoplane 4.14
Rhizosphere 43.79
Stem 0
Stem Tuber 0
Unclassified 23.45

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_439825 2162886007 Bacteria 2159
2 JGI25150J39212_1000450 3300002774 Bacteria 18199
3 JGI25151J46595_10000176 3300003187 Bacteria 82143
4 JGI25151J46595_10000417 3300003187 Bacteria 42849
5 JGI25153J46596_10000129 3300003215 Bacteria 82143
6 Ga0055526_1000101 3300003771 Bacteria 76352
7 Ga0055526_1000695 3300003771 Bacteria 25669
8 Ga0055526_1021503 3300003771 Bacteria 2241
9 Ga0055537_1000253 3300003773 Bacteria 38963
10 Ga0055537_1000264 3300003773 Bacteria 38263
11 Ga0055537_1000560 3300003773 Bacteria 21020
12 Ga0055524_1000285 3300003775 Bacteria 49311
13 Ga0055536_1003446 3300003781 Bacteria 8483
14 Ga0055536_1009644 3300003781 Bacteria 3956
15 Ga0055536_1013128 3300003781 Bacteria 3014
16 Ga0055536_1013612 3300003781 Bacteria 2916
17 Ga0055536_1028076 3300003781 Bacteria 1541
18 Ga0055534_1000078 3300003784 Bacteria 75996
19 Ga0055534_1000192 3300003784 Bacteria 44891
20 Ga0055528_1000075 3300003790 Bacteria 76054
21 Ga0055528_1000090 3300003790 Bacteria 72486
22 Ga0055530_10001261 3300003791 Bacteria 19164
23 Ga0055530_10003984 3300003791 Bacteria 7968
24 Ga0055530_10007612 3300003791 Bacteria 4523
25 Ga0055531_10005017 3300003794 Bacteria 7847
26 Ga0055531_10015594 3300003794 Bacteria 3336
27 Ga0055531_10018008 3300003794 Bacteria 2944
28 Ga0055531_10018315 3300003794 Bacteria 2897
29 Ga0055531_10018362 3300003794 Bacteria 2892
30 Ga0055531_10023058 3300003794 Bacteria 2349
31 Ga0055531_10041107 3300003794 Bacteria 1344
32 Ga0058692_1000029 3300003856 Bacteria 189475
33 Ga0065704_10000521 3300005289 Bacteria 27858
34 Ga0065704_10070807 3300005289 Bacteria 15869
35 Ga0065715_10126307 3300005293 Bacteria 2111
36 Ga0070670_100016047 3300005331 Bacteria 6427
37 Ga0070669_100055347 3300005353 Bacteria 2907
38 Ga0070672_100050304 3300005543 Bacteria 3245
39 Ga0070665_100045613 3300005548 Bacteria 4402
40 Ga0075364_10010700 3300006051 Bacteria 5548
41 Ga0105251_10000094 3300009011 Bacteria 85749
42 Ga0105251_10006228 3300009011 Bacteria 7649
43 Ga0105243_10005688 3300009148 Bacteria 9697
44 Ga0157371_10000824 3300013102 Bacteria 35546
45 Ga0157369_10000406 3300013105 Bacteria 57192
46 Ga0182008_10004937 3300014497 Bacteria 7688
47 Ga0182008_10014652 3300014497 Bacteria 4100
48 Ga0182006_1017277 3300015261 Bacteria 3067
49 Ga0182006_1031227 3300015261 Bacteria 2148
50 Ga0182007_10000004 3300015262 Bacteria 485875
51 Ga0182005_1000178 3300015265 Bacteria 43680
52 Ga0183360_10001 3300015689 Bacteria 3943671
53 Ga0163161_10030357 3300017792 Bacteria 3846
54 Ga0163161_10030404 3300017792 Bacteria 3844
55 Ga0207425_1000011 3300025245 Bacteria 550735
56 Ga0209129_1000044 3300025258 Bacteria 298971
57 Ga0209565_1000001 3300025263 Bacteria 2950419
58 Ga0209565_1000063 3300025263 Bacteria 183711
59 Ga0209565_1011622 3300025263 Bacteria 2133
60 Ga0209673_1000001 3300025273 Bacteria 3176258
61 Ga0209673_1000405 3300025273 Bacteria 76414
62 Ga0209673_1005455 3300025273 Bacteria 6386
63 Ga0209130_1005435 3300025284 Bacteria 4417
64 Ga0209130_1009984 3300025284 Bacteria 2652
65 Ga0209675_1000001 3300025291 Bacteria 2950293
66 Ga0209675_1000011 3300025291 Bacteria 520597
67 Ga0209675_1024286 3300025291 Bacteria 1552
68 Ga0209676_1000011 3300025292 Bacteria 860463
69 Ga0209676_1000086 3300025292 Bacteria 264155
70 Ga0209676_1000258 3300025292 Bacteria 112153
71 Ga0209676_1001629 3300025292 Bacteria 19852
72 Ga0209676_1001676 3300025292 Bacteria 19226
73 Ga0209676_1012442 3300025292 Bacteria 3342
74 Ga0209676_1013614 3300025292 Bacteria 3116
75 Ga0209676_1030173 3300025292 Bacteria 1662
76 Ga0209025_1000005 3300025294 Bacteria 1272149
77 Ga0209025_1000012 3300025294 Bacteria 924362
78 Ga0209025_1005081 3300025294 Bacteria 10956
79 Ga0209025_1008565 3300025294 Bacteria 7334
80 Ga0209564_1000001 3300025295 Bacteria 3176258
81 Ga0209564_1000190 3300025295 Bacteria 142675
82 Ga0209564_1006398 3300025295 Bacteria 6365
83 Ga0209758_1000018 3300025297 Bacteria 753320
84 Ga0209758_1008440 3300025297 Bacteria 6670
85 Ga0209050_1001155 3300025298 Bacteria 31580
86 Ga0209050_1001293 3300025298 Bacteria 28391
87 Ga0209050_1004782 3300025298 Bacteria 8930
88 Ga0209256_1000002 3300025299 Bacteria 1906740
89 Ga0209256_1004630 3300025299 Bacteria 8487
90 Ga0209256_1005340 3300025299 Bacteria 7465
91 Ga0209256_1011909 3300025299 Bacteria 3409
92 Ga0209256_1013206 3300025299 Bacteria 3082
93 Ga0209051_1002464 3300025303 Bacteria 13243
94 Ga0209051_1004785 3300025303 Bacteria 8171
95 Ga0209257_1000014 3300025304 Bacteria 946850
96 Ga0209257_1000121 3300025304 Bacteria 222588
97 Ga0209257_1000145 3300025304 Bacteria 195152
98 Ga0209257_1000429 3300025304 Bacteria 80831
99 Ga0209257_1007727 3300025304 Bacteria 6405
100 Ga0209257_1008915 3300025304 Bacteria 5525
101 Ga0209257_1014175 3300025304 Bacteria 3452
102 Ga0207713_1000257 3300025735 Bacteria 65404
103 Ga0207713_1011193 3300025735 Bacteria 4903
104 Ga0207647_10000006 3300025904 Bacteria 214791
105 Ga0207681_10022588 3300025923 Bacteria 4014
106 Ga0207681_10045616 3300025923 Bacteria 2944
107 Ga0207650_10011259 3300025925 Bacteria 6154
108 Ga0207650_10072464 3300025925 Bacteria 2593
109 Ga0207644_10067203 3300025931 Bacteria 2612
110 Ga0209371_1000072 3300027312 Bacteria 199942
111 Ga0209999_1000370 3300027543 Bacteria 6857
112 Ga0268266_10067946 3300028379 Bacteria 3085
113 Ga0268256_1000065 3300030500 Bacteria 199943
114 Ga0316177_1050317 3300030731 Bacteria 3595
115 Ga0316176_1083092 3300030732 Bacteria 3221
116 Ga0316178_1182957 3300030735 Bacteria 2207
117 Ga0316183_1202446 3300030742 Bacteria 2867
118 Ga0307513_10093679 3300031456 Bacteria 3052
119 Ga0307405_10107751 3300031731 Bacteria 1881
120 Ga0307406_10005497 3300031901 Bacteria 6935
121 Ga0307414_10001112 3300032004 Bacteria 13729
122 Ga0307414_10021525 3300032004 Bacteria 4048
123 Ga0307414_10041393 3300032004 Bacteria 3121
124 Ga0307414_10077755 3300032004 Bacteria 2416
125 Ga0307414_10290146 3300032004 Bacteria 1379
126 Ga0307411_10118571 3300032005 Bacteria 1909
127 Ga0395898_0258666 3300037466 Bacteria 1660
128 Ga0395905_0012610 3300037471 Bacteria 8130
129 Ga0395905_0124993 3300037471 Bacteria 2419
130 Ga0395901_0045299 3300038443 Bacteria 4564
131 Ga0237819_00005 3300038705 Bacteria 79509
132 Ga0439436_0004578 3300041404 Bacteria 4239
133 Ga0439436_0006836 3300041404 Bacteria 3504
134 Ga0439436_0012360 3300041404 Bacteria 2592
135 Ga0439436_0019353 3300041404 Bacteria 2033
136 Ga0439436_0030014 3300041404 Bacteria 1581
137 Ga0439439_0001207 3300041406 Bacteria 5002
138 Ga0439439_0022301 3300041406 Bacteria 1581
139 Ga0439447_004509 3300041407 Bacteria 4774
140 Ga0439465_0004898 3300041413 Bacteria 4303
141 Ga0439465_0005053 3300041413 Bacteria 4236
142 Ga0451793_1778180 3300041452 Bacteria 2608
143 Ga0451800_1011027 3300041459 Bacteria 7252
144 Ga0451806_581483 3300041462 Bacteria 7977
145 Ga0451804_1057294 3300041463 Bacteria 3366
146 Ga0451807_1996279 3300041486 Bacteria 1580
147 Ga0451807_2361908 3300041486 Bacteria 7587
148 Ga0451843_0012520 3300041509 Bacteria 12259
149 Ga0451843_1714129 3300041509 Bacteria 2115
150 Ga0439433_0018877 3300041999 Bacteria 1536
151 Ga0439445_0003569 3300042004 Bacteria 3486
152 Ga0439432_011679 3300042006 Bacteria 3023
153 Ga0439449_0011238 3300042007 Bacteria 3370
154 Ga0439449_0015972 3300042007 Bacteria 2821
155 Ga0439449_0035808 3300042007 Bacteria 1846
156 Ga0439462_0003809 3300042015 Bacteria 3641
157 Ga0451577_0025324 3300042876 Bacteria 5384
158 Ga0439440_0019974 3300042993 Bacteria 1499
159 Ga0495638_0002246 3300046460 Bacteria 16024
160 Ga0495606_0022324 3300046507 Bacteria 4613
161 Ga0495643_0011364 3300046522 Bacteria 5426
162 Ga0495663_0000202 3300046525 Bacteria 23728
163 Ga0495598_0002868 3300046537 Bacteria 3602
164 Ga0495621_0016867 3300046539 Bacteria 2352
165 Ga0495621_0018924 3300046539 Bacteria 2243
166 Ga0495633_0004299 3300046558 Bacteria 9097
167 Ga0495633_0011435 3300046558 Bacteria 4786
168 Ga0495656_0003400 3300046615 Bacteria 5382
169 Ga0495656_0019236 3300046615 Bacteria 2634
170 Ga0495668_0009557 3300046616 Bacteria 5942
171 Ga0495670_0048644 3300046691 Bacteria 2121
172 Ga0495670_0069666 3300046691 Bacteria 1779
173 Ga0495671_0055962 3300046692 Bacteria 1953
174 Ga0495636_0001129 3300047318 Bacteria 10051
175 Ga0495636_0004604 3300047318 Bacteria 5407
176 Ga0495636_0014048 3300047318 Bacteria 3182
177 Ga0495636_0062750 3300047318 Bacteria 1573
178 Ga0495672_0004495 3300047320 Bacteria 11403
179 Ga0495686_0022377 3300047472 Bacteria 4183
180 Ga0495686_0024370 3300047472 Bacteria 3977
181 Ga0496100_0072479 3300048903 Bacteria 2302
182 Ga0496106_0139532 3300048909 Bacteria 1906
183 Ga0496106_0172439 3300048909 Bacteria 1715
184 Ga0496110_0039749 3300048913 Bacteria 4096
185 Ga0496113_0020892 3300048916 Bacteria 4612
186 Ga0496114_0016296 3300048917 Bacteria 5986
187 Ga0496116_0065881 3300048919 Bacteria 2321
188 Ga0496117_0000728 3300048920 Bacteria 51699
189 Ga0496117_0004177 3300048920 Bacteria 16149
190 Ga0496117_0005918 3300048920 Bacteria 12620
191 Ga0496117_0020108 3300048920 Bacteria 5456
192 Ga0496117_0025168 3300048920 Bacteria 4685
193 Ga0496117_0030994 3300048920 Bacteria 4091
194 Ga0496118_0008737 3300048921 Bacteria 10399
195 Ga0496118_0015584 3300048921 Bacteria 7027
196 Ga0496118_0032373 3300048921 Bacteria 4308
197 Ga0496118_0106078 3300048921 Bacteria 1881
198 Ga0496119_0000821 3300048922 Bacteria 41505
199 Ga0496119_0015531 3300048922 Bacteria 5852
200 Ga0496120_0000285 3300048923 Bacteria 85370
201 Ga0496120_0002655 3300048923 Bacteria 17650
202 Ga0496121_0000129 3300048924 Bacteria 168148
203 Ga0496121_0008127 3300048924 Bacteria 12469
204 Ga0496121_0015793 3300048924 Bacteria 7863
205 Ga0496121_0026888 3300048924 Bacteria 5402
206 Ga0496122_0000913 3300048925 Bacteria 54280
207 Ga0496122_0023410 3300048925 Bacteria 5446
208 Ga0496122_0032824 3300048925 Bacteria 4283
209 Ga0496122_0046763 3300048925 Bacteria 3347
210 Ga0496122_0072374 3300048925 Bacteria 2451
211 Ga0496123_0000068 3300048926 Bacteria 208797
212 Ga0496123_0081612 3300048926 Bacteria 1964
213 Ga0496123_0081994 3300048926 Bacteria 1957
214 Ga0496124_0000732 3300048927 Bacteria 53766
215 Ga0496124_0001801 3300048927 Bacteria 29770
216 Ga0496124_0023068 3300048927 Bacteria 5692
217 Ga0496124_0025347 3300048927 Bacteria 5372
218 Ga0496124_0028364 3300048927 Bacteria 5008
219 Ga0496124_0035890 3300048927 Bacteria 4332
220 Ga0496124_0053305 3300048927 Bacteria 3429
221 Ga0496125_0003729 3300048928 Bacteria 18155
222 Ga0496125_0008340 3300048928 Bacteria 10870
223 Ga0496125_0014336 3300048928 Bacteria 7722
224 Ga0496125_0032885 3300048928 Bacteria 4599
225 Ga0496125_0035351 3300048928 Bacteria 4385
226 Ga0496125_0052960 3300048928 Bacteria 3332
227 Ga0496126_0005733 3300048929 Bacteria 14060
228 Ga0496126_0054599 3300048929 Bacteria 3617
229 Ga0501031_0119909 3300049568 Bacteria 1718
230 Ga0501034_0000923 3300049571 Bacteria 42924
231 Ga0501034_0016079 3300049571 Bacteria 7677
232 Ga0501034_0021863 3300049571 Bacteria 6517
233 Ga0501034_0035289 3300049571 Bacteria 5070
234 Ga0501034_0450306 3300049571 Bacteria 1205
235 Ga0501036_0035333 3300049572 Bacteria 4229
236 Ga0501038_0014117 3300049574 Bacteria 7277
237 Ga0501043_0021135 3300049579 Bacteria 5102
238 Ga0501047_0021327 3300049581 Bacteria 6218
239 Ga0501070_0135522 3300049586 Bacteria 2033
240 Ga0501073_0088395 3300049589 Bacteria 2154
241 Ga0501225_0008213 3300049705 Bacteria 3003
242 Ga0501080_0016883 3300049742 Bacteria 6742
243 Ga0501035_0014880 3300049822 Bacteria 7180
244 Ga0501044_0019187 3300049823 Bacteria 7319
245 nmdc:mga00v17_12783_c1 3300050491 Bacteria 4639
246 nmdc:mga00v17_55623_c1 3300050491 Bacteria 2417
247 nmdc:mga00v17_817_c1 3300050491 Bacteria 16934
248 Ga0500634_0000367 3300053161 Bacteria 14350

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300048920 Ga0496117_0004177 Ga0496117_0004177_9555_10595 322
2 3300042004 Ga0439445_0003569 Ga0439445_0003569_786_1802 338
3 3300048926 Ga0496123_0081612 Ga0496123_0081612_14_1030 338
4 iso_pu_bacteria 2941471342 2941472337 357
5 3300013105 Ga0157369_10000406 Ga0157369_1000040678 361
6 3300025303 Ga0209051_1002464 Ga0209051_10024648 361
7 3300025904 Ga0207647_10000006 Ga0207647_10000006106 361
8 3300048909 Ga0496106_0172439 Ga0496106_0172439_553_1647 361
9 3300048920 Ga0496117_0020108 Ga0496117_0020108_3764_4858 361
10 3300048921 Ga0496118_0106078 Ga0496118_0106078_655_1749 361
11 3300048924 Ga0496121_0000129 Ga0496121_0000129_81613_82707 361
12 3300048928 Ga0496125_0052960 Ga0496125_0052960_91_1185 361
13 3300041404 Ga0439436_0004578 Ga0439436_0004578_1215_2369 362
14 3300041406 Ga0439439_0001207 Ga0439439_0001207_2106_3260 362
15 3300037471 Ga0395905_0124993 Ga0395905_0124993_1249_2340 363
16 3300047318 Ga0495636_0062750 Ga0495636_0062750_408_1529 363
17 3300049571 Ga0501034_0000923 Ga0501034_0000923_39295_40401 363
18 iso_pu_bacteria 2941489479 2941490129 363
19 3300049571 Ga0501034_0035289 Ga0501034_0035289_2227_3339 364
20 3300050491 nmdc:mga00v17_817_c1 nmdc:mga00v17_817_c1_8537_9637 364
21 iso_pu_bacteria 2894414249 2894415635 364
22 3300031901 Ga0307406_10005497 Ga0307406_100054974 365
23 3300041404 Ga0439436_0030014 Ga0439436_0030014_196_1326 365
24 3300015689 Ga0183360_10001 Ga0183360_100011320 366
25 3300025263 Ga0209565_1011622 Ga0209565_10116222 366
26 3300046460 Ga0495638_0002246 Ga0495638_0002246_4037_5158 366
27 3300047472 Ga0495686_0024370 Ga0495686_0024370_527_1648 366
28 3300048919 Ga0496116_0065881 Ga0496116_0065881_936_2057 366
29 3300048924 Ga0496121_0008127 Ga0496121_0008127_8198_9385 366
30 3300048925 Ga0496122_0046763 Ga0496122_0046763_1386_2507 366
31 3300048925 Ga0496122_0072374 Ga0496122_0072374_1028_2128 366
32 3300048927 Ga0496124_0035890 Ga0496124_0035890_809_1930 366
33 3300048927 Ga0496124_0053305 Ga0496124_0053305_1177_2298 366
34 3300048928 Ga0496125_0032885 Ga0496125_0032885_2406_3527 366
35 iso_pu_bacteria 2895498888 2895503755 366
36 iso_pu_bacteria 2895511927 2895515599 366
37 iso_pu_bacteria 2895522137 2895524792 366
38 iso_pu_bacteria 2895525241 2895528356 366
39 3300046558 Ga0495633_0011435 Ga0495633_0011435_3019_4137 367
40 3300053161 Ga0500634_0000367 Ga0500634_0000367_2834_3952 367
41 iso_pu_bacteria 8002869464 8002871891 367
42 3300031731 Ga0307405_10107751 Ga0307405_101077512 368
43 3300032005 Ga0307411_10118571 Ga0307411_101185712 368
44 iso_pu_bacteria 2571042365 2572253886 368
45 iso_pu_bacteria 2576861471 2578458384 368
46 iso_pu_bacteria 2643221559 2643817845 368
47 iso_pu_bacteria 2643221573 2643879078 368
48 iso_pu_bacteria 2643221579 2643907759 368
49 iso_pu_bacteria 2643221581 2643916034 368
50 iso_pu_bacteria 2643221586 2643940539 368
51 iso_pu_bacteria 2643221612 2644079635 368
52 iso_pu_bacteria 2643221695 2644529355 368
53 iso_pu_bacteria 2643221720 2644660380 368
54 iso_pu_bacteria 2643221727 2644695077 368
55 iso_pu_bacteria 2643221728 2644697739 368
56 iso_pu_bacteria 2747842501 2748017956 368
57 iso_pu_bacteria 2818991457 2819663900 368
58 iso_pu_bacteria 2842757796 2842757869 368
59 iso_pu_bacteria 2842780639 2842780747 368
60 iso_pu_bacteria 2852649853 2852650807 368
61 iso_pu_bacteria 2852684882 2852685667 368
62 iso_pu_bacteria 2857442823 2857443470 368
63 iso_pu_bacteria 2919130084 2919131808 368
64 iso_pu_bacteria 2923516293 2923518437 368
65 iso_pu_bacteria 2929195423 2929197821 368
66 iso_pu_bacteria 2939589442 2939591490 368
67 iso_pu_bacteria 2939622612 2939623620 368
68 iso_pu_bacteria 2941475908 2941478349 368
69 iso_pu_bacteria 2974307012 2974308950 368
70 iso_pu_bacteria 2977247770 2977249665 368
71 iso_pu_bacteria 2984514374 2984515843 368
72 iso_pu_bacteria 8021622325 8021625594 368
73 iso_pu_bacteria 8021626552 8021628994 368
74 iso_pu_bacteria 8021648035 8021649954 368
75 3300003771 Ga0055526_1000101 Ga0055526_100010122 369
76 3300003773 Ga0055537_1000253 Ga0055537_10002534 369
77 3300003773 Ga0055537_1000560 Ga0055537_10005608 369
78 3300003775 Ga0055524_1000285 Ga0055524_100028536 369
79 3300003784 Ga0055534_1000078 Ga0055534_100007823 369
80 3300003790 Ga0055528_1000075 Ga0055528_100007522 369
81 3300025263 Ga0209565_1000001 Ga0209565_10000012456 369
82 3300025273 Ga0209673_1000001 Ga0209673_10000012456 369
83 3300025291 Ga0209675_1000001 Ga0209675_100000174 369
84 3300025295 Ga0209564_1000001 Ga0209564_1000001236 369
85 3300025299 Ga0209256_1000002 Ga0209256_10000021314 369
86 3300032004 Ga0307414_10290146 Ga0307414_102901462 369
87 3300042876 Ga0451577_0025324 Ga0451577_0025324_3082_4212 369
88 3300049568 Ga0501031_0119909 Ga0501031_0119909_71_1180 369
89 3300049571 Ga0501034_0021863 Ga0501034_0021863_2061_3170 369
90 3300049571 Ga0501034_0450306 Ga0501034_0450306_19_1131 369
91 3300049572 Ga0501036_0035333 Ga0501036_0035333_1779_2888 369
92 3300049574 Ga0501038_0014117 Ga0501038_0014117_2035_3144 369
93 3300049579 Ga0501043_0021135 Ga0501043_0021135_3815_4924 369
94 3300049581 Ga0501047_0021327 Ga0501047_0021327_1085_2194 369
95 3300049586 Ga0501070_0135522 Ga0501070_0135522_471_1580 369
96 3300049589 Ga0501073_0088395 Ga0501073_0088395_745_1854 369
97 3300049742 Ga0501080_0016883 Ga0501080_0016883_3853_4962 369
98 3300049822 Ga0501035_0014880 Ga0501035_0014880_3993_5102 369
99 3300049823 Ga0501044_0019187 Ga0501044_0019187_2190_3299 369
100 iso_pu_bacteria 2643221593 2643976988 369
101 iso_pu_bacteria 2995948881 2995951932 369
102 iso_pu_bacteria 8003014200 8003015892 369
103 3300038705 Ga0237819_00005 Ga0237819_00005_31151_32287 370
104 3300042993 Ga0439440_0019974 Ga0439440_0019974_43_1155 370
105 3300025304 Ga0209257_1000121 Ga0209257_100012172 371
106 3300041509 Ga0451843_0012520 Ga0451843_0012520_9299_10414 371
107 3300048925 Ga0496122_0032824 Ga0496122_0032824_1739_2854 371
108 3300048926 Ga0496123_0081994 Ga0496123_0081994_500_1615 371
109 3300048929 Ga0496126_0054599 Ga0496126_0054599_1883_2998 371
110 2162886007 SwRhRL2b_contig_439825 SwRhRL2b_0805.00000080 372
111 3300002774 JGI25150J39212_1000450 JGI25150J39212_10004502 372
112 3300003187 JGI25151J46595_10000176 JGI25151J46595_100001762 372
113 3300003187 JGI25151J46595_10000417 JGI25151J46595_1000041714 372
114 3300003215 JGI25153J46596_10000129 JGI25153J46596_100001292 372
115 3300003771 Ga0055526_1000695 Ga0055526_10006956 372
116 3300003771 Ga0055526_1021503 Ga0055526_10215031 372
117 3300003773 Ga0055537_1000264 Ga0055537_100026413 372
118 3300003781 Ga0055536_1003446 Ga0055536_10034467 372
119 3300003781 Ga0055536_1009644 Ga0055536_10096444 372
120 3300003781 Ga0055536_1013128 Ga0055536_10131282 372
121 3300003781 Ga0055536_1013612 Ga0055536_10136124 372
122 3300003781 Ga0055536_1028076 Ga0055536_10280762 372
123 3300003784 Ga0055534_1000192 Ga0055534_100019225 372
124 3300003790 Ga0055528_1000090 Ga0055528_100009041 372
125 3300003791 Ga0055530_10001261 Ga0055530_1000126116 372
126 3300003791 Ga0055530_10003984 Ga0055530_100039843 372
127 3300003791 Ga0055530_10007612 Ga0055530_100076124 372
128 3300003794 Ga0055531_10005017 Ga0055531_100050174 372
129 3300003794 Ga0055531_10015594 Ga0055531_100155943 372
130 3300003794 Ga0055531_10018008 Ga0055531_100180083 372
131 3300003794 Ga0055531_10018315 Ga0055531_100183151 372
132 3300003794 Ga0055531_10018362 Ga0055531_100183624 372
133 3300003794 Ga0055531_10023058 Ga0055531_100230581 372
134 3300003794 Ga0055531_10041107 Ga0055531_100411071 372
135 3300003856 Ga0058692_1000029 Ga0058692_100002980 372
136 3300005289 Ga0065704_10000521 Ga0065704_1000052111 372
137 3300005289 Ga0065704_10070807 Ga0065704_100708074 372
138 3300005293 Ga0065715_10126307 Ga0065715_101263072 372
139 3300005331 Ga0070670_100016047 Ga0070670_1000160473 372
140 3300005353 Ga0070669_100055347 Ga0070669_1000553472 372
141 3300005543 Ga0070672_100050304 Ga0070672_1000503043 372
142 3300005548 Ga0070665_100045613 Ga0070665_1000456135 372
143 3300006051 Ga0075364_10010700 Ga0075364_100107005 372
144 3300009011 Ga0105251_10000094 Ga0105251_1000009466 372
145 3300009011 Ga0105251_10006228 Ga0105251_100062283 372
146 3300009148 Ga0105243_10005688 Ga0105243_100056885 372
147 3300013102 Ga0157371_10000824 Ga0157371_1000082426 372
148 3300014497 Ga0182008_10004937 Ga0182008_100049376 372
149 3300014497 Ga0182008_10014652 Ga0182008_100146523 372
150 3300015261 Ga0182006_1017277 Ga0182006_10172772 372
151 3300015261 Ga0182006_1031227 Ga0182006_10312272 372
152 3300015262 Ga0182007_10000004 Ga0182007_10000004408 372
153 3300015265 Ga0182005_1000178 Ga0182005_100017831 372
154 3300017792 Ga0163161_10030357 Ga0163161_100303572 372
155 3300017792 Ga0163161_10030404 Ga0163161_100304043 372
156 3300025245 Ga0207425_1000011 Ga0207425_100001198 372
157 3300025258 Ga0209129_1000044 Ga0209129_100004489 372
158 3300025263 Ga0209565_1000063 Ga0209565_1000063161 372
159 3300025273 Ga0209673_1000405 Ga0209673_100040556 372
160 3300025273 Ga0209673_1005455 Ga0209673_10054554 372
161 3300025284 Ga0209130_1005435 Ga0209130_10054355 372
162 3300025284 Ga0209130_1009984 Ga0209130_10099843 372
163 3300025291 Ga0209675_1000011 Ga0209675_1000011121 372
164 3300025291 Ga0209675_1024286 Ga0209675_10242862 372
165 3300025292 Ga0209676_1000011 Ga0209676_1000011481 372
166 3300025292 Ga0209676_1000086 Ga0209676_1000086220 372
167 3300025292 Ga0209676_1000258 Ga0209676_100025814 372
168 3300025292 Ga0209676_1001629 Ga0209676_100162916 372
169 3300025292 Ga0209676_1001676 Ga0209676_10016765 372
170 3300025292 Ga0209676_1012442 Ga0209676_10124424 372
171 3300025292 Ga0209676_1013614 Ga0209676_10136143 372
172 3300025292 Ga0209676_1030173 Ga0209676_10301732 372
173 3300025294 Ga0209025_1000005 Ga0209025_1000005932 372
174 3300025294 Ga0209025_1000012 Ga0209025_1000012411 372
175 3300025294 Ga0209025_1005081 Ga0209025_10050818 372
176 3300025294 Ga0209025_1008565 Ga0209025_10085655 372
177 3300025295 Ga0209564_1000190 Ga0209564_100019046 372
178 3300025295 Ga0209564_1006398 Ga0209564_10063983 372
179 3300025297 Ga0209758_1000018 Ga0209758_1000018246 372
180 3300025297 Ga0209758_1008440 Ga0209758_10084405 372
181 3300025298 Ga0209050_1001155 Ga0209050_10011557 372
182 3300025298 Ga0209050_1001293 Ga0209050_10012934 372
183 3300025298 Ga0209050_1004782 Ga0209050_10047824 372
184 3300025299 Ga0209256_1004630 Ga0209256_10046304 372
185 3300025299 Ga0209256_1005340 Ga0209256_10053407 372
186 3300025299 Ga0209256_1011909 Ga0209256_10119093 372
187 3300025299 Ga0209256_1013206 Ga0209256_10132062 372
188 3300025303 Ga0209051_1004785 Ga0209051_10047855 372
189 3300025304 Ga0209257_1000014 Ga0209257_1000014540 372
190 3300025304 Ga0209257_1000145 Ga0209257_1000145126 372
191 3300025304 Ga0209257_1000429 Ga0209257_100042966 372
192 3300025304 Ga0209257_1007727 Ga0209257_10077274 372
193 3300025304 Ga0209257_1008915 Ga0209257_10089155 372
194 3300025304 Ga0209257_1014175 Ga0209257_10141754 372
195 3300025735 Ga0207713_1000257 Ga0207713_10002575 372
196 3300025735 Ga0207713_1011193 Ga0207713_10111933 372
197 3300025923 Ga0207681_10022588 Ga0207681_100225884 372
198 3300025923 Ga0207681_10045616 Ga0207681_100456164 372
199 3300025925 Ga0207650_10011259 Ga0207650_100112593 372
200 3300025925 Ga0207650_10072464 Ga0207650_100724643 372
201 3300025931 Ga0207644_10067203 Ga0207644_100672033 372
202 3300027312 Ga0209371_1000072 Ga0209371_100007286 372
203 3300027543 Ga0209999_1000370 Ga0209999_10003703 372
204 3300028379 Ga0268266_10067946 Ga0268266_100679463 372
205 3300030500 Ga0268256_1000065 Ga0268256_100006586 372
206 3300030731 Ga0316177_1050317 Ga0316177_10503175 372
207 3300030732 Ga0316176_1083092 Ga0316176_10830922 372
208 3300030735 Ga0316178_1182957 Ga0316178_11829573 372
209 3300030742 Ga0316183_1202446 Ga0316183_12024463 372
210 3300031456 Ga0307513_10093679 Ga0307513_100936792 372
211 3300032004 Ga0307414_10001112 Ga0307414_100011128 372
212 3300032004 Ga0307414_10021525 Ga0307414_100215253 372
213 3300032004 Ga0307414_10041393 Ga0307414_100413933 372
214 3300032004 Ga0307414_10077755 Ga0307414_100777552 372
215 3300037466 Ga0395898_0258666 Ga0395898_0258666_57_1181 372
216 3300037471 Ga0395905_0012610 Ga0395905_0012610_2964_4088 372
217 3300038443 Ga0395901_0045299 Ga0395901_0045299_3020_4144 372
218 3300041404 Ga0439436_0006836 Ga0439436_0006836_859_1977 372
219 3300041404 Ga0439436_0012360 Ga0439436_0012360_1024_2196 372
220 3300041404 Ga0439436_0019353 Ga0439436_0019353_225_1343 372
221 3300041406 Ga0439439_0022301 Ga0439439_0022301_292_1410 372
222 3300041407 Ga0439447_004509 Ga0439447_004509_1817_2980 372
223 3300041413 Ga0439465_0004898 Ga0439465_0004898_2109_3227 372
224 3300041413 Ga0439465_0005053 Ga0439465_0005053_2496_3668 372
225 3300041452 Ga0451793_1778180 Ga0451793_1778180_566_1705 372
226 3300041459 Ga0451800_1011027 Ga0451800_1011027_2117_3256 372
227 3300041462 Ga0451806_581483 Ga0451806_581483_4625_5764 372
228 3300041463 Ga0451804_1057294 Ga0451804_1057294_2117_3256 372
229 3300041486 Ga0451807_1996279 Ga0451807_1996279_113_1231 372
230 3300041486 Ga0451807_2361908 Ga0451807_2361908_4296_5435 372
231 3300041509 Ga0451843_1714129 Ga0451843_1714129_846_1976 372
232 3300041999 Ga0439433_0018877 Ga0439433_0018877_375_1496 372
233 3300042006 Ga0439432_011679 Ga0439432_011679_642_1760 372
234 3300042007 Ga0439449_0011238 Ga0439449_0011238_745_1866 372
235 3300042007 Ga0439449_0015972 Ga0439449_0015972_1135_2253 372
236 3300042007 Ga0439449_0035808 Ga0439449_0035808_512_1633 372
237 3300042015 Ga0439462_0003809 Ga0439462_0003809_823_1941 372
238 3300046507 Ga0495606_0022324 Ga0495606_0022324_1948_3066 372
239 3300046522 Ga0495643_0011364 Ga0495643_0011364_1230_2369 372
240 3300046525 Ga0495663_0000202 Ga0495663_0000202_21409_22539 372
241 3300046537 Ga0495598_0002868 Ga0495598_0002868_1900_3024 372
242 3300046539 Ga0495621_0016867 Ga0495621_0016867_991_2115 372
243 3300046539 Ga0495621_0018924 Ga0495621_0018924_535_1653 372
244 3300046558 Ga0495633_0004299 Ga0495633_0004299_1247_2386 372
245 3300046615 Ga0495656_0003400 Ga0495656_0003400_1404_2522 372
246 3300046615 Ga0495656_0019236 Ga0495656_0019236_434_1552 372
247 3300046616 Ga0495668_0009557 Ga0495668_0009557_1907_3067 372
248 3300046691 Ga0495670_0048644 Ga0495670_0048644_632_1750 372
249 3300046691 Ga0495670_0069666 Ga0495670_0069666_49_1167 372
250 3300046692 Ga0495671_0055962 Ga0495671_0055962_173_1303 372
251 3300047318 Ga0495636_0001129 Ga0495636_0001129_3679_4797 372
252 3300047318 Ga0495636_0004604 Ga0495636_0004604_1630_2748 372
253 3300047318 Ga0495636_0014048 Ga0495636_0014048_124_1242 372
254 3300047320 Ga0495672_0004495 Ga0495672_0004495_1219_2358 372
255 3300047472 Ga0495686_0022377 Ga0495686_0022377_1776_2915 372
256 3300048903 Ga0496100_0072479 Ga0496100_0072479_660_1784 372
257 3300048909 Ga0496106_0139532 Ga0496106_0139532_274_1422 372
258 3300048913 Ga0496110_0039749 Ga0496110_0039749_499_1647 372
259 3300048916 Ga0496113_0020892 Ga0496113_0020892_841_1989 372
260 3300048917 Ga0496114_0016296 Ga0496114_0016296_2782_3900 372
261 3300048920 Ga0496117_0000728 Ga0496117_0000728_39455_40651 372
262 3300048920 Ga0496117_0005918 Ga0496117_0005918_3663_4802 372
263 3300048920 Ga0496117_0025168 Ga0496117_0025168_1128_2267 372
264 3300048920 Ga0496117_0030994 Ga0496117_0030994_2650_3789 372
265 3300048921 Ga0496118_0008737 Ga0496118_0008737_3690_4829 372
266 3300048921 Ga0496118_0015584 Ga0496118_0015584_3379_4518 372
267 3300048921 Ga0496118_0032373 Ga0496118_0032373_2088_3227 372
268 3300048922 Ga0496119_0000821 Ga0496119_0000821_1327_2466 372
269 3300048922 Ga0496119_0015531 Ga0496119_0015531_2033_3229 372
270 3300048923 Ga0496120_0000285 Ga0496120_0000285_81805_83001 372
271 3300048923 Ga0496120_0002655 Ga0496120_0002655_9192_10331 372
272 3300048924 Ga0496121_0015793 Ga0496121_0015793_3468_4607 372
273 3300048924 Ga0496121_0026888 Ga0496121_0026888_1165_2304 372
274 3300048925 Ga0496122_0000913 Ga0496122_0000913_2191_3387 372
275 3300048925 Ga0496122_0023410 Ga0496122_0023410_185_1324 372
276 3300048926 Ga0496123_0000068 Ga0496123_0000068_53450_54646 372
277 3300048927 Ga0496124_0000732 Ga0496124_0000732_49460_50656 372
278 3300048927 Ga0496124_0001801 Ga0496124_0001801_3564_4703 372
279 3300048927 Ga0496124_0023068 Ga0496124_0023068_3828_4967 372
280 3300048927 Ga0496124_0025347 Ga0496124_0025347_3805_4944 372
281 3300048927 Ga0496124_0028364 Ga0496124_0028364_2397_3536 372
282 3300048928 Ga0496125_0003729 Ga0496125_0003729_10687_11826 372
283 3300048928 Ga0496125_0008340 Ga0496125_0008340_8613_9752 372
284 3300048928 Ga0496125_0014336 Ga0496125_0014336_2144_3283 372
285 3300048928 Ga0496125_0035351 Ga0496125_0035351_2086_3207 372
286 3300048929 Ga0496126_0005733 Ga0496126_0005733_3714_4853 372
287 3300049571 Ga0501034_0016079 Ga0501034_0016079_5164_6282 372
288 3300049705 Ga0501225_0008213 Ga0501225_0008213_294_1415 372
289 3300050491 nmdc:mga00v17_12783_c1 nmdc:mga00v17_12783_c1_2017_3138 372
290 3300050491 nmdc:mga00v17_55623_c1 nmdc:mga00v17_55623_c1_540_1679 372

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03054

tRNA_Me_trans

tRNA methyl transferase HUP domain

1

206

0.97

PF20258

tRNA_Me_trans_C

Aminomethyltransferase beta-barrel domain

292

368

0.97

PF20259

tRNA_Me_trans_M

tRNA methyl transferase PRC-barrel domain

210

283

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
2der-assembly1.cif.gz_A cocrystal structure of an rna sulfuration enzyme mnma and trna-glu in the initial trna binding state 0.9609 4 359
2deu-assembly2.cif.gz_B cocrystal structure of an rna sulfuration enzyme mnma and trna-glu in the adenylated intermediate state 0.9599 4 359
2hma-assembly1.cif.gz_A-2 the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmu from streptococcus pneumoniae 0.9513 2 359
2der-assembly1.cif.gz_A cocrystal structure of an rna sulfuration enzyme mnma and trna-glu in the initial trna binding state 0.9421 4 359
2deu-assembly2.cif.gz_B cocrystal structure of an rna sulfuration enzyme mnma and trna-glu in the adenylated intermediate state 0.9367 4 359
ID Description Score Start End Superfamily
af_O75648_300_387_2.40.30.10 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9729 278 359 2.40.30.10
2derA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9465 4 208 3.40.50.620
2derA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.937 4 208 3.40.50.620
2detA03 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9366 278 359 2.40.30.10
af_Q9W5B6_2_218_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9343 6 207 3.40.50.620
ID Description Score Start End GO Terms
AF-A0A4Q3TL06-F1-model_v4 tRNA-uridine 2-sulfurtransferase (EC 2.8.1.13) 0.9877 1 182 GO:0002143
GO:0103016
AF-A0A5C5TTQ6-F1-model_v4 tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) 0.9799 1 372 GO:0000049
GO:0002143
GO:0005524
GO:0005737
GO:0103016
AF-A0A7W7XYX6-F1-model_v4 tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) 0.9777 1 372 GO:0000049
GO:0002143
GO:0005524
GO:0005737
GO:0016783
AF-A0A5B7QZZ3-F1-model_v4 deleted 0.9774 2 364
AF-A0A5C5TTQ6-F1-model_v4 tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) 0.9773 1 372 GO:0000049
GO:0002143
GO:0005524
GO:0005737
GO:0103016

Feature Viewer

pLDDT pTM Quality
88.78 0.88 High
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Predicted Structure (AlphaFold2)

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