F385241

General Info

Members Datasets Scaffolds Average Seq Length
282 249 564 1038

Family's Representative Sequence

Representative Sequence 3300053077|Ga0495601_0001659|Ga0495601_0001659_8444_12256
Length 1189
Sequence MFSRFFIDRPIFAAVVSIIIAVAGGLALANLPVSEYPAITPPAVTISITYPGASARVVADTVAAPIEQQVNGVPGMLYMSSNSGNDGSYSLTVTFEIGTNLNAALVMVQNRVQLAMPVLPSSVQQQGITVRKRTPDMLLIINFDSPDGRYDNVFLSNFATIHVRDQLLRVEGVSDITVFGQRDYSMRLWLDPHELAARGVTAMDVAAAVRKQNIEAAPGGVGQALSGRTRSFQFPLDTRGRLVETDEFANIIVKTGRPRRPAMQTGTGTAAGARPGSSPTRTGPGLLSGGTATAAAGLTSVQLATDTGNLLAPGPATVGANALAGGAMDLGPDPAAGIVRVKDVARVELAAATYDNGATLDGRPSCGLAVRLLPDANALEVGDRVRAKMAELKTRFPEGVDYAIVYDTTPFIRESIRDVVFTLFEAVGLVALVVLVFLQSWRATLIPMVAVPVAILGTFAVMLALGFTLNNISLFGLVLAIGIVVDDAIVVVENVERWLDHGLAPRDAAYRAMGEVTGPIVAIALILCAVFVPCAFVGGIPGQFYRQFAVTITASTVFSAINSLTLSPALAAILLQSKARREARKGFVGRAVGVVFWPLKFGGRLFNRTFGLGTRVYAWSIARLLRVSLLVLAVYGGLLWLTYDTFMRAPLGFVPQQDMGRLYVSVQLPDSASLNRTQAVMARADEISRRTPGVAHTTSAIGLSILAGANSSNFGTIFVILDPFDDRQDPSLRGDAIAARLRREFAQIKDADIKVFGPAPVRGLSAAGGFKLMVEDRGGLGLLELQKQTDTLVRKLQTDPTTVGVVTQFRSRTPQLYLDVDRTKVESLGVDINDVNQTMQIYLGSSYVNSFNAFGRHWQVKLQAEGQFRNQLTDVNLLQVRNKFGEMVPLGTLVRLREVNGPVSVGRYDLYPAAAINGNVPPDVSSGETINAVNRAAAESLPRAMAAEWTDVFYLQIRTGNTGIYVFLLAVVFVFLALAALYESWALPLAVILVVPLCLLCSVEGVRWAGKSVDIYVQIGLIVLIGLACKNAILIVEFAEVLHHQGRSRAEAAVEASRLRIRPIIMTSLAFIFGVVPLILSSGAGAEMRRSLGLAVFWGMLGVTLFGVFLTPVFFVLIQRGVDARLFAAALTRWGAAALLGALLGTTIGFLLARLKVGELPANAVIGGLAGAVTLVLVPLTWRWVRPRK

Samples

Sample ID Description Type Environment
1 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
2 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
3 3300002771 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB Metagenome Endosphere
4 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
5 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
6 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
7 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
8 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
9 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
10 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
11 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
12 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
13 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
14 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
15 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
16 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
17 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
18 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
19 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
20 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
21 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
22 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
23 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
24 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
25 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
26 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
27 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
28 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
29 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
30 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
31 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
32 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
33 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
34 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
35 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
36 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
37 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
38 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
39 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
40 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
41 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
42 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
43 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
44 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
45 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
46 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
47 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
48 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
49 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
50 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
51 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
52 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
53 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
54 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
55 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
56 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
57 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
58 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
59 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
60 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
61 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
62 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
63 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
64 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
65 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
66 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
67 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
68 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
69 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
70 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
71 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
72 3300025207 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
73 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
78 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
79 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
81 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
83 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
84 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
115 3300027364 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes) (version 2) Metagenome Rhizosphere
116 3300027462 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes) (version 2) Metagenome Rhizosphere
117 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
118 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
119 3300027617 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes) (version 2) Metagenome Rhizosphere
120 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
121 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
122 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
123 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
124 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
125 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
126 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
127 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
128 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
129 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
130 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
131 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
132 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
133 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
134 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
135 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
136 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
137 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
138 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
139 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
140 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
141 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
142 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
143 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
144 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
145 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
146 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
147 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
148 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
149 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
150 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
151 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
152 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
153 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
154 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
155 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
156 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
157 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
158 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
159 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
160 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
161 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
162 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
163 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
164 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
165 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
166 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
167 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
168 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
169 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
170 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
171 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
172 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
173 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
174 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
175 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
176 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
177 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
178 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
179 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
180 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
181 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
182 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
183 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
184 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
185 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
186 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
187 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
188 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
189 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
190 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
191 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
192 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
193 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
194 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
195 2508501122 Ensifer yinggardensis WSM1721 Isolate Nodule
196 2509276019 Ensifer aridi TW10 Isolate Nodule
197 2511231004 Pseudomonas sp. GM102 Isolate Nodule
198 2511231006 Pseudomonas sp. GM17 Isolate Nodule
199 2511231016 Pseudomonas sp. GM50 Isolate Nodule
200 2512047018 Pseudomonas chlororaphis chlororaphis GP72 Isolate Rhizosphere
201 2513237088 Rhizobium mesoamericanum STM6155 Isolate Nodule
202 2554235234 Klebsiella michiganensis SA2 Isolate Unclassified
203 2558860100 Sinorhizobium sp. PC2 Isolate Nodule
204 2582580891 Pseudomonas chlororaphis YL-1 Isolate Unclassified
205 2585427591 Rahnella aquatilis OV744 Isolate Rhizosphere
206 2585427592 Rahnella aquatilis OV588 Isolate Rhizosphere
207 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
208 2597489887 Pseudomonas chlororaphis aureofaciens 30-84 Isolate Rhizosphere
209 2599185257 Pseudomonas sp. NFACC41-3 Isolate Rhizoplane
210 2599185302 Pseudomonas sp. NFACC43 Isolate Rhizoplane
211 2599185304 Pseudomonas sp. NFACC47-1 Isolate Rhizoplane
212 2599185309 Pseudomonas sp. NFACC49-2 Isolate Rhizoplane
213 2599185310 Pseudomonas sp. NFACC09-4 Isolate Rhizoplane
214 2599185312 Pseudomonas sp. NFACC32-1 Isolate Rhizoplane
215 2599185320 Pseudomonas sp. NFACC36 Isolate Rhizoplane
216 2602042109 Klebsiella aerogenes NFIX39 Isolate Rhizoplane
217 2643221557 Ensifer sp. Root558 Isolate Unclassified
218 2643221610 Ensifer sp. Root74 Isolate Unclassified
219 2643221653 Rhizobium sp. Root1240 Isolate Unclassified
220 2643221668 Ensifer sp. Root423 Isolate Unclassified
221 2643221675 Ensifer sp. Root1298 Isolate Unclassified
222 2643221680 Ensifer sp. Root1312 Isolate Unclassified
223 2643221719 Rhizobium sp. Root274 Isolate Unclassified
224 2643221726 Ensifer sp. Root954 Isolate Unclassified
225 2667528173 Rahnella sp. NFIX50 Isolate Rhizoplane
226 2671180172 Pseudomonas sp. NFIX51 Isolate Rhizoplane
227 2671180531 Gemmata sp. SH-PL17 Isolate Unclassified
228 2687453257 Planctomyces sp. SH-PL62 Isolate Unclassified
229 2740892503 Pseudomonas chlororaphis piscium PCL1391 Isolate Unclassified
230 2767802442 Phyllobacterium brassicacearum 29-15 Isolate Rhizoplane
231 2850079185 Ensifer aridi JNVU TP6 Isolate Unclassified
232 2852103415 Edaphovirga cremea DSM 105170 Isolate Rhizosphere
233 2904474040 Rahnella aquatilis 4485 Isolate Rhizosphere
234 2919150387 Rahnella aceris 1817 Isolate Unclassified
235 2920107658 Aquisphaera insulae JC669 Isolate Rhizosphere
236 2923153595 Pseudomonas chlororaphis piscium PCL1391 Isolate Unclassified
237 2927143783 Rahnella sp. 2050 Isolate Unclassified
238 2945934425 Paraburkholderia graminis W1I13 Isolate Rhizosphere
239 2971820967 Klebsiella sp. MPUS7 Isolate Rhizosphere
240 2984286254 Pseudomonas chlororaphis aurantiaca JD37 Isolate Rhizosphere
241 2988728565 Pseudomonas corrugata RM1-1-4 Isolate Rhizosphere
242 2989776772 Rhizobium glycinendophyticum CL12 Isolate Unclassified
243 2996336353 Mesorhizobium sp. YM1C-6-2 Isolate Unclassified
244 3000376612 Enterobacteriaceae bacterium 4M9 Isolate Rhizosphere
245 3007395558 Pseudomonas chlororaphis PCL1601 Isolate Rhizosphere
246 641736154 Burkholderia ambifaria IOP40-10 Isolate Rhizosphere
247 8005246636 Rhizobium wuzhouense W44 Isolate Rhizosphere
248 8015687852 Pseudomonas chlororaphis aurantiaca RP4 Isolate Rhizosphere
249 8055770955 Pseudomonas chlororaphis qlu-1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 79.79
Metatranscriptomes 0.35
Isolates 19.86

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.22
Nodule 4.61
Rhizoplane 6.38
Rhizosphere 67.73
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495601_0001659 3300053077 Bacteria 12286
2 JGI25162J39368_1000084 3300002737 Bacteria 108880
3 JGI25163J39215_1000245 3300002771 Bacteria 19957
4 JGI25164J39214_1000062 3300002772 Bacteria 108882
5 JGI25160J50197_1000025 3300003354 Bacteria 186706
6 Ga0055538_1000060 3300003751 Bacteria 108880
7 Ga0055539_1000092 3300003752 Bacteria 108880
8 Ga0055533_1000101 3300003756 Bacteria 108880
9 Ga0055525_1000134 3300003759 Bacteria 108880
10 Ga0055541_1000062 3300003841 Bacteria 108880
11 Ga0065165_1000173 3300005262 Bacteria 114553
12 Ga0065165_1000555 3300005262 Bacteria 55601
13 Ga0065704_10007224 3300005289 Bacteria 6088
14 Ga0065707_10083057 3300005295 Bacteria 10666
15 Ga0070658_10003487 3300005327 Bacteria 12922
16 Ga0070676_10006143 3300005328 Bacteria 6415
17 Ga0070690_100004071 3300005330 Bacteria 8090
18 Ga0070670_100003844 3300005331 Bacteria 12520
19 Ga0070670_100020704 3300005331 Bacteria 5657
20 Ga0070670_100039463 3300005331 Bacteria 4060
21 Ga0070677_10002114 3300005333 Bacteria 6340
22 Ga0068869_100000152 3300005334 Bacteria 34316
23 Ga0070680_100004342 3300005336 Bacteria 10662
24 Ga0070660_100034924 3300005339 Bacteria 3802
25 Ga0070689_100003594 3300005340 Bacteria 10334
26 Ga0070668_100008277 3300005347 Bacteria 7719
27 Ga0070668_100013507 3300005347 Bacteria 6096
28 Ga0070669_100019384 3300005353 Bacteria 4857
29 Ga0070674_100006574 3300005356 Bacteria 6795
30 Ga0070673_100016069 3300005364 Bacteria 5281
31 Ga0070659_100002797 3300005366 Bacteria 12421
32 Ga0070659_100028305 3300005366 Bacteria 4326
33 Ga0070667_100000813 3300005367 Bacteria 29150
34 Ga0070708_100000053 3300005445 Bacteria 77258
35 Ga0070678_100001901 3300005456 Bacteria 11252
36 Ga0070662_100018510 3300005457 Bacteria 4712
37 Ga0070681_10024096 3300005458 Bacteria 6127
38 Ga0068867_100006637 3300005459 Bacteria 8181
39 Ga0070706_100032590 3300005467 Bacteria 4806
40 Ga0070699_100007636 3300005518 Bacteria 9402
41 Ga0070697_100006065 3300005536 Bacteria 9353
42 Ga0070686_100000881 3300005544 Bacteria 17426
43 Ga0070695_100000348 3300005545 Bacteria 23615
44 Ga0070665_100000029 3300005548 Bacteria 342699
45 Ga0068855_100004782 3300005563 Bacteria 16532
46 Ga0068859_100000697 3300005617 Bacteria 33649
47 Ga0068864_100001811 3300005618 Bacteria 17534
48 Ga0068861_100001626 3300005719 Bacteria 14332
49 Ga0068863_100000894 3300005841 Bacteria 30053
50 Ga0068858_100000345 3300005842 Bacteria 49147
51 Ga0068860_100002661 3300005843 Bacteria 18597
52 Ga0068860_100017945 3300005843 Bacteria 6892
53 Ga0068860_100030442 3300005843 Bacteria 5191
54 Ga0068862_100001435 3300005844 Bacteria 22006
55 Ga0081455_10000317 3300005937 Bacteria 63219
56 Ga0081539_10002722 3300005985 Bacteria 23921
57 Ga0097621_100000021 3300006237 Bacteria 85595
58 Ga0068871_100000016 3300006358 Bacteria 92842
59 Ga0068865_100009004 3300006881 Bacteria 6174
60 Ga0097620_100000697 3300006931 Bacteria 33649
61 Ga0079104_1000121 3300006946 Bacteria 111689
62 Ga0099826_10000023 3300006948 Bacteria 154989
63 Ga0105251_10000530 3300009011 Bacteria 36002
64 Ga0105244_10000418 3300009036 Bacteria 39533
65 Ga0105240_10013819 3300009093 Bacteria 11059
66 Ga0111539_10000047 3300009094 Bacteria 119739
67 Ga0111539_10004993 3300009094 Bacteria 17245
68 Ga0105247_10020435 3300009101 Bacteria 3981
69 Ga0114129_10017566 3300009147 Bacteria 10182
70 Ga0105242_10000663 3300009176 Bacteria 26947
71 Ga0105248_10003189 3300009177 Bacteria 18180
72 Ga0105239_10006157 3300010375 Bacteria 13960
73 Ga0157371_10000145 3300013102 Bacteria 103500
74 Ga0157370_10000978 3300013104 Bacteria 36196
75 Ga0157370_10019585 3300013104 Bacteria 6782
76 Ga0157370_10034291 3300013104 Bacteria 4944
77 Ga0157374_10000034 3300013296 Bacteria 180660
78 Ga0157378_10004613 3300013297 Bacteria 12090
79 Ga0157379_10000443 3300014968 Bacteria 33618
80 Ga0157376_10023510 3300014969 Bacteria 4823
81 Ga0214543_1000027 3300021327 Bacteria 215065
82 Ga0209760_100001 3300025207 Bacteria 348781
83 Ga0209784_100001 3300025224 Bacteria 3600592
84 Ga0209566_100001 3300025225 Bacteria 3600765
85 Ga0209674_100002 3300025226 Bacteria 3600592
86 Ga0209563_100008 3300025230 Bacteria 1554545
87 Ga0207427_100002 3300025231 Bacteria 1355321
88 Ga0209437_100007 3300025233 Bacteria 938377
89 Ga0209677_100004 3300025253 Bacteria 1554545
90 Ga0209130_1002978 3300025284 Bacteria 7692
91 Ga0209676_1000027 3300025292 Bacteria 560222
92 Ga0209676_1001236 3300025292 Bacteria 26898
93 Ga0207426_1000020 3300025302 Bacteria 558084
94 Ga0209051_1000998 3300025303 Bacteria 27177
95 Ga0207696_1000625 3300025711 Bacteria 25945
96 Ga0207655_1000894 3300025728 Bacteria 31361
97 Ga0207713_1000003 3300025735 Bacteria 860698
98 Ga0207645_10002859 3300025907 Bacteria 13384
99 Ga0207643_10006324 3300025908 Bacteria 6342
100 Ga0207684_10007110 3300025910 Bacteria 10117
101 Ga0207695_10060655 3300025913 Bacteria 3914
102 Ga0207662_10013556 3300025918 Bacteria 4560
103 Ga0207657_10043970 3300025919 Bacteria 3931
104 Ga0207646_10008638 3300025922 Bacteria 10184
105 Ga0207646_10016413 3300025922 Bacteria 6948
106 Ga0207681_10003154 3300025923 Bacteria 10364
107 Ga0207650_10006186 3300025925 Bacteria 8158
108 Ga0207650_10006309 3300025925 Bacteria 8081
109 Ga0207706_10015137 3300025933 Bacteria 6980
110 Ga0207686_10005172 3300025934 Bacteria 7010
111 Ga0207670_10004414 3300025936 Bacteria 7572
112 Ga0207704_10009731 3300025938 Bacteria 4654
113 Ga0207691_10007089 3300025940 Bacteria 10821
114 Ga0207689_10000946 3300025942 Bacteria 27914
115 Ga0207689_10001762 3300025942 Bacteria 20417
116 Ga0207679_10009266 3300025945 Bacteria 6297
117 Ga0207667_10001018 3300025949 Bacteria 35714
118 Ga0207667_10009710 3300025949 Bacteria 11317
119 Ga0207651_10002839 3300025960 Bacteria 8341
120 Ga0207668_10003084 3300025972 Bacteria 9769
121 Ga0207658_10016831 3300025986 Bacteria 5031
122 Ga0207703_10000292 3300026035 Bacteria 54983
123 Ga0207708_10000072 3300026075 Bacteria 81023
124 Ga0207641_10001732 3300026088 Bacteria 21075
125 Ga0207641_10003390 3300026088 Bacteria 14137
126 Ga0207648_10000057 3300026089 Bacteria 104605
127 Ga0207648_10001002 3300026089 Bacteria 31804
128 Ga0207676_10001008 3300026095 Bacteria 21634
129 Ga0207676_10005793 3300026095 Bacteria 8735
130 Ga0207675_100008668 3300026118 Bacteria 9560
131 Ga0207675_100034168 3300026118 Bacteria 4740
132 Ga0207683_10003947 3300026121 Bacteria 12870
133 Ga0209281_1000001 3300027111 Bacteria 1933496
134 Ga0209967_1000022 3300027364 Bacteria 19654
135 Ga0210000_1000119 3300027462 Bacteria 11047
136 Ga0209995_1000245 3300027471 Bacteria 8655
137 Ga0209968_1000197 3300027526 Bacteria 10431
138 Ga0210002_1000030 3300027617 Bacteria 21934
139 Ga0209282_1000047 3300027666 Bacteria 114735
140 Ga0209971_1000105 3300027682 Bacteria 24700
141 Ga0209998_10000160 3300027717 Bacteria 24712
142 Ga0209974_10000127 3300027876 Bacteria 22596
143 Ga0207428_10000003 3300027907 Bacteria 799783
144 Ga0207428_10014531 3300027907 Bacteria 6830
145 Ga0268266_10000109 3300028379 Bacteria 171899
146 Ga0268265_10001824 3300028380 Bacteria 17021
147 Ga0268264_10000854 3300028381 Bacteria 32463
148 Ga0265760_10002071 3300031090 Bacteria 5901
149 Ga0316579_10008759 3300031691 Bacteria 4231
150 Ga0307412_10000069 3300031911 Bacteria 108218
151 Ga0307414_10010205 3300032004 Bacteria 5438
152 Ga0373935_0004168 3300035692 Bacteria 8468
153 Ga0316584_0029300 3300036712 Bacteria 4063
154 Ga0395899_0012258 3300037312 Bacteria 6566
155 Ga0395900_0049446 3300037418 Bacteria 4332
156 Ga0395898_0045001 3300037466 Bacteria 4339
157 Ga0395901_0000742 3300038443 Bacteria 36831
158 Ga0439448_0000010 3300042005 Bacteria 33604
159 Ga0439449_0000370 3300042007 Bacteria 16526
160 Ga0439463_000148 3300042016 Bacteria 18006
161 Ga0451576_0007058 3300045051 Bacteria 13569
162 Ga0495650_0000016 3300046471 Bacteria 554693
163 Ga0495605_0001596 3300046474 Bacteria 14687
164 Ga0495584_0000322 3300046491 Bacteria 33438
165 Ga0495606_0003074 3300046507 Bacteria 18194
166 Ga0495637_0000697 3300046520 Bacteria 23127
167 Ga0495644_0000925 3300046523 Bacteria 12202
168 Ga0495622_0001817 3300046557 Bacteria 10510
169 Ga0495611_0001379 3300046648 Bacteria 12184
170 Ga0495625_0006863 3300046660 Bacteria 10055
171 Ga0495635_0002850 3300046663 Bacteria 11880
172 Ga0495657_0000615 3300046675 Bacteria 32383
173 Ga0495671_0000052 3300046692 Bacteria 133684
174 Ga0495660_0000189 3300046810 Bacteria 64823
175 Ga0495581_0005853 3300047315 Bacteria 7126
176 Ga0495683_0000474 3300047323 Bacteria 31190
177 Ga0495626_0002622 3300048091 Bacteria 12237
178 Ga0496100_0000094 3300048903 Bacteria 50690
179 Ga0496101_0000181 3300048904 Bacteria 50837
180 Ga0496102_0000397 3300048905 Bacteria 50794
181 Ga0496103_0000361 3300048906 Bacteria 41064
182 Ga0496104_0002756 3300048907 Bacteria 15133
183 Ga0496104_0015755 3300048907 Bacteria 6856
184 Ga0496105_0014035 3300048908 Bacteria 6373
185 Ga0496116_0000158 3300048919 Bacteria 140604
186 Ga0496117_0000210 3300048920 Bacteria 112808
187 Ga0496117_0001514 3300048920 Bacteria 33282
188 Ga0496118_0000788 3300048921 Bacteria 50781
189 Ga0496118_0001836 3300048921 Bacteria 30415
190 Ga0496119_0006954 3300048922 Bacteria 10322
191 Ga0496120_0003400 3300048923 Bacteria 14549
192 Ga0496121_0000457 3300048924 Bacteria 80467
193 Ga0496122_0000013 3300048925 Bacteria 501039
194 Ga0496123_0000010 3300048926 Bacteria 501039
195 Ga0496124_0000152 3300048927 Bacteria 140118
196 Ga0496124_0033635 3300048927 Bacteria 4508
197 Ga0496125_0000546 3300048928 Bacteria 64890
198 Ga0496125_0028950 3300048928 Bacteria 4989
199 Ga0496126_0000284 3300048929 Bacteria 107119
200 Ga0495678_001257 3300049459 Bacteria 20628
201 Ga0501031_0001196 3300049568 Bacteria 15831
202 Ga0501031_0008285 3300049568 Bacteria 6762
203 Ga0501032_0000195 3300049569 Bacteria 50432
204 Ga0501032_0001766 3300049569 Bacteria 17061
205 Ga0501034_0012942 3300049571 Bacteria 8600
206 Ga0501036_0004141 3300049572 Bacteria 11663
207 Ga0501037_0000883 3300049573 Bacteria 22360
208 Ga0501038_0000392 3300049574 Bacteria 37955
209 Ga0501039_0003896 3300049575 Bacteria 11205
210 Ga0501039_0036064 3300049575 Bacteria 3815
211 Ga0501041_0006001 3300049577 Bacteria 7106
212 Ga0501041_0028098 3300049577 Bacteria 3392
213 Ga0501042_0000972 3300049578 Bacteria 16197
214 Ga0501043_0002936 3300049579 Bacteria 14238
215 Ga0501068_0001088 3300049584 Bacteria 14394
216 Ga0501079_0017952 3300049741 Bacteria 5402
217 Ga0501081_0006576 3300049743 Bacteria 7554
218 Ga0501081_0013886 3300049743 Bacteria 5301
219 Ga0501044_0003381 3300049823 Bacteria 17981
220 Ga0501044_0005379 3300049823 Bacteria 14221
221 Ga0501045_0002170 3300049824 Bacteria 13300
222 nmdc:mga08y16_14879_c1 3300050511 Bacteria 8182
223 nmdc:mga08y16_4_c1 3300050511 Bacteria 916963
224 Ga0500636_0001396 3300053177 Bacteria 13128
225 Ga0500637_0002902 3300053178 Bacteria 7744
226 Ga0501084_0040036 3300054114 Bacteria 3920
227 2509108992 2508501122 Bacteria 6292184
228 2509375286 2509276019 Bacteria 6802256
229 2511253389 2511231004 Bacteria 6669789
230 2511264776 2511231006 Bacteria 6794709
231 2511324240 2511231016 Bacteria 6704427
232 2512327989 2512047018 Bacteria 6663241
233 2513596959 2513237088 Bacteria 6927906
234 2555257883 2554235234 Bacteria 5762085
235 2558866374 2558860100 Bacteria 8458965
236 2583794899 2582580891 Bacteria 6800976
237 2585825625 2585427591 Bacteria 5482980
238 2585832237 2585427592 Bacteria 5370892
239 2586000689 2585427634 Bacteria 6455027
240 2597858693 2597489887 Bacteria 6666321
241 2599805807 2599185257 Bacteria 6492581
242 2599944393 2599185302 Bacteria 5954930
243 2599954865 2599185304 Bacteria 5951361
244 2599984206 2599185309 Bacteria 5969593
245 2599991414 2599185310 Bacteria 6014457
246 2600001206 2599185312 Bacteria 5912071
247 2600048995 2599185320 Bacteria 5963263
248 2603866801 2602042109 Bacteria 5152801
249 2643806016 2643221557 Bacteria 7184309
250 2644066192 2643221610 Bacteria 7480339
251 2644298251 2643221653 Bacteria 4569637
252 2644377276 2643221668 Bacteria 7306521
253 2644417523 2643221675 Bacteria 7473456
254 2644450919 2643221680 Bacteria 7473610
255 2644656503 2643221719 Bacteria 4568197
256 2644692658 2643221726 Bacteria 7455827
257 2671108036 2667528173 Bacteria 5375747
258 2671773128 2671180172 Bacteria 6495783
259 2673165556 2671180531 Bacteria 9045424
260 2688066423 2687453257 Bacteria 6784659
261 2743738186 2740892503 Bacteria 6855563
262 2770198863 2767802442 Bacteria 5747986
263 2850079649 2850079185 Bacteria 6848280
264 2852105467 2852103415 Bacteria 5193810
265 2904475289 2904474040 Bacteria 5504324
266 2919151635 2919150387 Bacteria 5500879
267 2920111711 2920107658 Bacteria 10042636
268 2923157236 2923153595 Bacteria 6870622
269 2927146509 2927143783 Bacteria 5504251
270 2945940924 2945934425 Bacteria 7444609
271 2971823685 2971820967 Bacteria 5823634
272 2984287058 2984286254 Bacteria 6702062
273 2988729340 2988728565 Bacteria 6124362
274 2989776791 2989776772 Bacteria 4843317
275 2996338786 2996336353 Bacteria 5511628
276 3000378183 3000376612 Bacteria 4705565
277 3007398751 3007395558 Bacteria 6755444
278 642416985 641736154 Bacteria 7689995
279 8005247923 8005246636 Bacteria 4933972
280 8015691451 8015687852 Bacteria 6613826
281 8015693189 8015687852 Bacteria 6613826
282 8055776438 8055770955 Bacteria 6827675
283 Ga0495601_0001659
284 JGI25162J39368_1000084
285 JGI25163J39215_1000245
286 JGI25164J39214_1000062
287 JGI25160J50197_1000025
288 Ga0055538_1000060
289 Ga0055539_1000092
290 Ga0055533_1000101
291 Ga0055525_1000134
292 Ga0055541_1000062
293 Ga0065165_1000173
294 Ga0065165_1000555
295 Ga0065704_10007224
296 Ga0065707_10083057
297 Ga0070658_10003487
298 Ga0070676_10006143
299 Ga0070690_100004071
300 Ga0070670_100003844
301 Ga0070670_100020704
302 Ga0070670_100039463
303 Ga0070677_10002114
304 Ga0068869_100000152
305 Ga0070680_100004342
306 Ga0070660_100034924
307 Ga0070689_100003594
308 Ga0070668_100008277
309 Ga0070668_100013507
310 Ga0070669_100019384
311 Ga0070674_100006574
312 Ga0070673_100016069
313 Ga0070659_100002797
314 Ga0070659_100028305
315 Ga0070667_100000813
316 Ga0070708_100000053
317 Ga0070678_100001901
318 Ga0070662_100018510
319 Ga0070681_10024096
320 Ga0068867_100006637
321 Ga0070706_100032590
322 Ga0070699_100007636
323 Ga0070697_100006065
324 Ga0070686_100000881
325 Ga0070695_100000348
326 Ga0070665_100000029
327 Ga0068855_100004782
328 Ga0068859_100000697
329 Ga0068864_100001811
330 Ga0068861_100001626
331 Ga0068863_100000894
332 Ga0068858_100000345
333 Ga0068860_100002661
334 Ga0068860_100017945
335 Ga0068860_100030442
336 Ga0068862_100001435
337 Ga0081455_10000317
338 Ga0081539_10002722
339 Ga0097621_100000021
340 Ga0068871_100000016
341 Ga0068865_100009004
342 Ga0097620_100000697
343 Ga0079104_1000121
344 Ga0099826_10000023
345 Ga0105251_10000530
346 Ga0105244_10000418
347 Ga0105240_10013819
348 Ga0111539_10000047
349 Ga0111539_10004993
350 Ga0105247_10020435
351 Ga0114129_10017566
352 Ga0105242_10000663
353 Ga0105248_10003189
354 Ga0105239_10006157
355 Ga0157371_10000145
356 Ga0157370_10000978
357 Ga0157370_10019585
358 Ga0157370_10034291
359 Ga0157374_10000034
360 Ga0157378_10004613
361 Ga0157379_10000443
362 Ga0157376_10023510
363 Ga0214543_1000027
364 Ga0209760_100001
365 Ga0209784_100001
366 Ga0209566_100001
367 Ga0209674_100002
368 Ga0209563_100008
369 Ga0207427_100002
370 Ga0209437_100007
371 Ga0209677_100004
372 Ga0209130_1002978
373 Ga0209676_1000027
374 Ga0209676_1001236
375 Ga0207426_1000020
376 Ga0209051_1000998
377 Ga0207696_1000625
378 Ga0207655_1000894
379 Ga0207713_1000003
380 Ga0207645_10002859
381 Ga0207643_10006324
382 Ga0207684_10007110
383 Ga0207695_10060655
384 Ga0207662_10013556
385 Ga0207657_10043970
386 Ga0207646_10008638
387 Ga0207646_10016413
388 Ga0207681_10003154
389 Ga0207650_10006186
390 Ga0207650_10006309
391 Ga0207706_10015137
392 Ga0207686_10005172
393 Ga0207670_10004414
394 Ga0207704_10009731
395 Ga0207691_10007089
396 Ga0207689_10000946
397 Ga0207689_10001762
398 Ga0207679_10009266
399 Ga0207667_10001018
400 Ga0207667_10009710
401 Ga0207651_10002839
402 Ga0207668_10003084
403 Ga0207658_10016831
404 Ga0207703_10000292
405 Ga0207708_10000072
406 Ga0207641_10001732
407 Ga0207641_10003390
408 Ga0207648_10000057
409 Ga0207648_10001002
410 Ga0207676_10001008
411 Ga0207676_10005793
412 Ga0207675_100008668
413 Ga0207675_100034168
414 Ga0207683_10003947
415 Ga0209281_1000001
416 Ga0209967_1000022
417 Ga0210000_1000119
418 Ga0209995_1000245
419 Ga0209968_1000197
420 Ga0210002_1000030
421 Ga0209282_1000047
422 Ga0209971_1000105
423 Ga0209998_10000160
424 Ga0209974_10000127
425 Ga0207428_10000003
426 Ga0207428_10014531
427 Ga0268266_10000109
428 Ga0268265_10001824
429 Ga0268264_10000854
430 Ga0265760_10002071
431 Ga0316579_10008759
432 Ga0307412_10000069
433 Ga0307414_10010205
434 Ga0373935_0004168
435 Ga0316584_0029300
436 Ga0395899_0012258
437 Ga0395900_0049446
438 Ga0395898_0045001
439 Ga0395901_0000742
440 Ga0439448_0000010
441 Ga0439449_0000370
442 Ga0439463_000148
443 Ga0451576_0007058
444 Ga0495650_0000016
445 Ga0495605_0001596
446 Ga0495584_0000322
447 Ga0495606_0003074
448 Ga0495637_0000697
449 Ga0495644_0000925
450 Ga0495622_0001817
451 Ga0495611_0001379
452 Ga0495625_0006863
453 Ga0495635_0002850
454 Ga0495657_0000615
455 Ga0495671_0000052
456 Ga0495660_0000189
457 Ga0495581_0005853
458 Ga0495683_0000474
459 Ga0495626_0002622
460 Ga0496100_0000094
461 Ga0496101_0000181
462 Ga0496102_0000397
463 Ga0496103_0000361
464 Ga0496104_0002756
465 Ga0496104_0015755
466 Ga0496105_0014035
467 Ga0496116_0000158
468 Ga0496117_0000210
469 Ga0496117_0001514
470 Ga0496118_0000788
471 Ga0496118_0001836
472 Ga0496119_0006954
473 Ga0496120_0003400
474 Ga0496121_0000457
475 Ga0496122_0000013
476 Ga0496123_0000010
477 Ga0496124_0000152
478 Ga0496124_0033635
479 Ga0496125_0000546
480 Ga0496125_0028950
481 Ga0496126_0000284
482 Ga0495678_001257
483 Ga0501031_0001196
484 Ga0501031_0008285
485 Ga0501032_0000195
486 Ga0501032_0001766
487 Ga0501034_0012942
488 Ga0501036_0004141
489 Ga0501037_0000883
490 Ga0501038_0000392
491 Ga0501039_0003896
492 Ga0501039_0036064
493 Ga0501041_0006001
494 Ga0501041_0028098
495 Ga0501042_0000972
496 Ga0501043_0002936
497 Ga0501068_0001088
498 Ga0501079_0017952
499 Ga0501081_0006576
500 Ga0501081_0013886
501 Ga0501044_0003381
502 Ga0501044_0005379
503 Ga0501045_0002170
504 nmdc:mga08y16_14879_c1
505 nmdc:mga08y16_4_c1
506 Ga0500636_0001396
507 Ga0500637_0002902
508 Ga0501084_0040036
509 2509108992
510 2509375286
511 2511253389
512 2511264776
513 2511324240
514 2512327989
515 2513596959
516 2555257883
517 2558866374
518 2583794899
519 2585825625
520 2585832237
521 2586000689
522 2597858693
523 2599805807
524 2599944393
525 2599954865
526 2599984206
527 2599991414
528 2600001206
529 2600048995
530 2603866801
531 2643806016
532 2644066192
533 2644298251
534 2644377276
535 2644417523
536 2644450919
537 2644656503
538 2644692658
539 2671108036
540 2671773128
541 2673165556
542 2688066423
543 2743738186
544 2770198863
545 2850079649
546 2852105467
547 2904475289
548 2919151635
549 2920111711
550 2923157236
551 2927146509
552 2945940924
553 2971823685
554 2984287058
555 2988729340
556 2989776791
557 2996338786
558 3000378183
559 3007398751
560 642416985
561 8005247923
562 8015691451
563 8015693189
564 8055776438

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00873

ACR_tran

AcrB/AcrD/AcrF family

330

1119

0.99

PF00873

ACR_tran

AcrB/AcrD/AcrF family

2

260

0.98

PF03176

MMPL

MMPL family

403

601

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
4u95-assembly1.cif.gz_C coupling of remote alternating-access transport mechanisms for protons and substrates in the multidrug efflux pump acrb 0.9515 1 988
4u8y-assembly1.cif.gz_C coupling of remote alternating-access transport mechanisms for protons and substrates in the multidrug efflux pump acrb 0.9506 1 988
5lq3-assembly2.cif.gz_D structures and transport dynamics of the campylobacter jejuni multidrug efflux pump cmeb 0.9481 5 993
7rr7-assembly1.cif.gz_C multidrug efflux pump subunit acrb 0.9478 1 988
6vkt-assembly1.cif.gz_C cryo-electron microscopy structures of a gonococcal multidrug efflux pump illuminate a mechanism of erythromycin drug recognition 0.9453 1 989
ID Description Score Start End Superfamily
af_P24181_41_133_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9924 41 133 3.30.70.1430
5t0oC02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9825 38 132 3.30.70.1430
af_P24181_41_133_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9819 41 133 3.30.70.1430
3aobB02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9782 38 132 3.30.70.1430
4zjlF05 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9742 823 988 1.20.1640.10
ID Description Score Start End GO Terms
AF-A0A4Q6D1A4-F1-model_v4 deleted 0.9878 863 990
AF-A0A5R8QME5-F1-model_v4 deleted 0.9831 773 991
AF-A0A0C1ITC4-F1-model_v4 Efflux pump membrane transporter 0.9708 1 996 GO:0005886
GO:0015562
GO:0042910
AF-A0A0C1ITC4-F1-model_v4 Efflux pump membrane transporter 0.9699 1 996 GO:0005886
GO:0015562
GO:0042910
AF-K9Y168-F1-model_v4 Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 0.967 1 995 GO:0005886
GO:0015562
GO:0042910

Map