F384321

General Info

Members Datasets Scaffolds Average Seq Length
281 178 562 367

Family's Representative Sequence

Representative Sequence 3300025711|Ga0207696_1000069|Ga0207696_1000069205
Length 407
Sequence MSSPPVTGGETERGRFDIRVRCPTSIIRAMISPSNQLVIVGMSGGVDSSVAAHLLLQQGYRVEGLFMSNWEEDEDGYCTTAQDFQDARHVCNQLNIPLHKVSFAREYRDRVFEHFLSEYRAGRTPNPDVLCNREIKFGVCFDYAKRLGADLIATGHYARVVHDSTPQLLRGLDPGKDQSYFLHAMPASALAKTLFPVGELHKEEVRCIAKQLALPTHDKKDSTGICFIGERPFAEFLAKYLPAQPGEIRSIDGELLGRHTGLMYYTLGQRQGLGIGGKANHDEAPWFVAAKDLQRNQLIVVQGHDHPFMQQRALDAVELSWIAGAPPSTRFTCTAKARYRQADQRCTVVIGENNTARVEFAVPQRAITPGQYVVFYDGDICLGGGVINSTEPVQTENSLRQGAQKWC

Samples

Sample ID Description Type Environment
1 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
10 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
13 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
14 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
15 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
16 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
17 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
18 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
19 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
20 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
21 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
22 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
23 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
24 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
25 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
26 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
27 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
28 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
29 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
30 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
31 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
32 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
33 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
34 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
35 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
36 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
37 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
38 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
39 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
40 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
41 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
42 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
43 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
44 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
45 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
46 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
47 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
48 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
49 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
50 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
51 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
52 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
53 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
54 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
55 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
56 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
57 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
58 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
59 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
60 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
61 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
62 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
63 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
64 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
65 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
66 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
67 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
68 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
69 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
70 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
71 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
72 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
74 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
104 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
105 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
109 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
110 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
111 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
112 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
113 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
114 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
115 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
116 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
117 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
118 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
119 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
120 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
121 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
122 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
123 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
124 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
125 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
126 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
127 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
128 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
129 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
130 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
131 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
132 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
133 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
134 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
135 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
136 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
137 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
138 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
139 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
140 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
141 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
142 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
143 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
144 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
145 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
146 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
147 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
148 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
149 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
150 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
151 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
152 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
153 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
154 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
155 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
156 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
157 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
158 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
159 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
160 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
161 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
162 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
163 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
164 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
165 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
166 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
167 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
168 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
169 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
170 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
171 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
172 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
173 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
174 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
175 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
176 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
177 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
178 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.29
Metatranscriptomes 0.71
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.78
Nodule 0
Rhizoplane 3.2
Rhizosphere 92.53
Stem 0
Stem Tuber 0
Unclassified 0.71

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207696_1000069 3300025711 Bacteria 227744
2 JGI25156J39149_1000141 3300002705 Bacteria 53180
3 Ga0065704_10071233 3300005289 Bacteria 12352
4 Ga0065712_10013234 3300005290 Bacteria 1981
5 Ga0065707_10082586 3300005295 Bacteria 13562
6 Ga0070658_10090677 3300005327 Bacteria 2518
7 Ga0070690_100009211 3300005330 Bacteria 5713
8 Ga0070690_100039229 3300005330 Bacteria 2992
9 Ga0070670_100067875 3300005331 Bacteria 3060
10 Ga0070677_10073699 3300005333 Bacteria 1443
11 Ga0068869_100014729 3300005334 Bacteria 5229
12 Ga0068869_100123521 3300005334 Bacteria 1983
13 Ga0068868_100032925 3300005338 Bacteria 3992
14 Ga0068868_100207013 3300005338 Bacteria 1638
15 Ga0070689_100011292 3300005340 Bacteria 6394
16 Ga0070689_100041370 3300005340 Bacteria 3538
17 Ga0070689_100063924 3300005340 Bacteria 2863
18 Ga0070689_100141068 3300005340 Bacteria 1938
19 Ga0070691_10009003 3300005341 Bacteria 4567
20 Ga0070661_100081714 3300005344 Bacteria 2386
21 Ga0070669_100016548 3300005353 Bacteria 5264
22 Ga0070675_100046217 3300005354 Bacteria 3565
23 Ga0070675_100116265 3300005354 Bacteria 2268
24 Ga0070674_100071894 3300005356 Bacteria 2448
25 Ga0070674_100098561 3300005356 Bacteria 2125
26 Ga0070673_100003534 3300005364 Bacteria 9749
27 Ga0070688_100035990 3300005365 Bacteria 3009
28 Ga0070667_100010636 3300005367 Bacteria 7598
29 Ga0070667_100204565 3300005367 Bacteria 1753
30 Ga0070701_10034044 3300005438 Bacteria 2550
31 Ga0070705_100013628 3300005440 Bacteria 4162
32 Ga0070700_100011710 3300005441 Bacteria 4867
33 Ga0070694_100021562 3300005444 Bacteria 4119
34 Ga0068867_100016025 3300005459 Bacteria 5322
35 Ga0068867_100103292 3300005459 Bacteria 2179
36 Ga0070679_100025160 3300005530 Bacteria 5839
37 Ga0070684_100000750 3300005535 Bacteria 22478
38 Ga0070684_100011340 3300005535 Bacteria 7098
39 Ga0070672_100003687 3300005543 Bacteria 9957
40 Ga0070686_100002993 3300005544 Bacteria 9264
41 Ga0070696_100086162 3300005546 Bacteria 2230
42 Ga0070693_100002077 3300005547 Bacteria 9167
43 Ga0070693_100082903 3300005547 Bacteria 1915
44 Ga0070665_100002801 3300005548 Bacteria 18901
45 Ga0070665_100156123 3300005548 Bacteria 2284
46 Ga0070665_100386137 3300005548 Bacteria 1408
47 Ga0070704_100024729 3300005549 Bacteria 3944
48 Ga0068855_100043041 3300005563 Bacteria 5351
49 Ga0070664_100000919 3300005564 Bacteria 22956
50 Ga0070702_100001501 3300005615 Bacteria 9584
51 Ga0068852_100041192 3300005616 Bacteria 3902
52 Ga0068859_100028068 3300005617 Bacteria 5643
53 Ga0068864_100002391 3300005618 Bacteria 15507
54 Ga0068864_100024117 3300005618 Bacteria 5114
55 Ga0068861_100010500 3300005719 Bacteria 6428
56 Ga0068861_100191960 3300005719 Bacteria 1708
57 Ga0068863_100003225 3300005841 Bacteria 16160
58 Ga0068863_100199616 3300005841 Bacteria 1924
59 Ga0068858_100000826 3300005842 Bacteria 32308
60 Ga0068858_100035491 3300005842 Bacteria 4625
61 Ga0068858_100238599 3300005842 Bacteria 1724
62 Ga0068860_100070632 3300005843 Bacteria 3319
63 Ga0068860_100084282 3300005843 Bacteria 3024
64 Ga0068860_100187148 3300005843 Bacteria 2002
65 Ga0068860_100443637 3300005843 Bacteria 1290
66 Ga0068862_100008512 3300005844 Bacteria 8487
67 Ga0068862_100110517 3300005844 Bacteria 2412
68 Ga0097621_100028730 3300006237 Bacteria 4386
69 Ga0097621_100031013 3300006237 Bacteria 4238
70 Ga0068871_100071764 3300006358 Bacteria 2849
71 Ga0068871_100134894 3300006358 Bacteria 2096
72 Ga0068871_100159340 3300006358 Bacteria 1929
73 Ga0068871_100184249 3300006358 Bacteria 1795
74 Ga0075428_100004688 3300006844 Bacteria 15134
75 Ga0075428_100012400 3300006844 Bacteria 9480
76 Ga0075428_100017881 3300006844 Bacteria 7833
77 Ga0075430_100005463 3300006846 Bacteria 10735
78 Ga0075430_100027883 3300006846 Bacteria 4797
79 Ga0075430_100057328 3300006846 Bacteria 3277
80 Ga0075431_100021260 3300006847 Bacteria 6632
81 Ga0075431_100049798 3300006847 Bacteria 4319
82 Ga0075431_100230226 3300006847 Bacteria 1888
83 Ga0075433_10027027 3300006852 Bacteria 4865
84 Ga0075433_10087419 3300006852 Bacteria 2753
85 Ga0075429_100004438 3300006880 Bacteria 12059
86 Ga0075429_100069050 3300006880 Bacteria 3076
87 Ga0068865_100027034 3300006881 Bacteria 3787
88 Ga0097620_100028071 3300006931 Bacteria 5643
89 Ga0105250_10000006 3300009092 Bacteria 390071
90 Ga0111539_10004402 3300009094 Bacteria 18415
91 Ga0111539_10017497 3300009094 Bacteria 8874
92 Ga0111539_10027509 3300009094 Bacteria 6946
93 Ga0111539_10278027 3300009094 Bacteria 1948
94 Ga0105245_10022449 3300009098 Bacteria 5539
95 Ga0105247_10006648 3300009101 Bacteria 7138
96 Ga0114129_10002340 3300009147 Bacteria 26307
97 Ga0114129_10097359 3300009147 Bacteria 4073
98 Ga0105243_10134659 3300009148 Bacteria 2101
99 Ga0105242_10029596 3300009176 Bacteria 4368
100 Ga0105242_10089904 3300009176 Bacteria 2582
101 Ga0105248_10002350 3300009177 Bacteria 20990
102 Ga0105248_10007073 3300009177 Bacteria 12292
103 Ga0105248_10213739 3300009177 Bacteria 2172
104 Ga0105248_10281983 3300009177 Bacteria 1871
105 Ga0105249_10111149 3300009553 Bacteria 2590
106 Ga0105246_10009025 3300011119 Bacteria 6139
107 Ga0157374_10010883 3300013296 Bacteria 7851
108 Ga0157374_10043272 3300013296 Bacteria 4159
109 Ga0157378_10100337 3300013297 Bacteria 2642
110 Ga0163162_10009958 3300013306 Bacteria 9247
111 Ga0163162_10025235 3300013306 Bacteria 5873
112 Ga0163162_10164619 3300013306 Bacteria 2341
113 Ga0157375_10007695 3300013308 Bacteria 9427
114 Ga0157375_10029214 3300013308 Bacteria 5182
115 Ga0157375_10085988 3300013308 Bacteria 3195
116 Ga0163163_10002593 3300014325 Bacteria 15319
117 Ga0163163_10021329 3300014325 Bacteria 6111
118 Ga0157380_10022213 3300014326 Bacteria 4772
119 Ga0157380_10079087 3300014326 Bacteria 2684
120 Ga0157380_10152023 3300014326 Bacteria 2002
121 Ga0157380_10238270 3300014326 Bacteria 1639
122 Ga0157379_10000337 3300014968 Bacteria 37644
123 Ga0157379_10005235 3300014968 Bacteria 11142
124 Ga0157379_10087598 3300014968 Bacteria 2791
125 Ga0157376_10025928 3300014969 Bacteria 4624
126 Ga0157376_10042984 3300014969 Bacteria 3707
127 Ga0157376_10226451 3300014969 Bacteria 1734
128 Ga0209258_100442 3300025242 Bacteria 46898
129 Ga0209759_1003961 3300025256 Bacteria 5689
130 Ga0207656_10019533 3300025321 Bacteria 2681
131 Ga0207680_10033674 3300025903 Bacteria 2925
132 Ga0207645_10028319 3300025907 Bacteria 3617
133 Ga0207705_10055617 3300025909 Bacteria 2853
134 Ga0207705_10132020 3300025909 Bacteria 1859
135 Ga0207695_10148171 3300025913 Bacteria 2288
136 Ga0207660_10042924 3300025917 Bacteria 3176
137 Ga0207662_10015603 3300025918 Bacteria 4276
138 Ga0207649_10057745 3300025920 Bacteria 2427
139 Ga0207652_10065599 3300025921 Bacteria 3144
140 Ga0207681_10041662 3300025923 Bacteria 3063
141 Ga0207659_10002583 3300025926 Bacteria 10784
142 Ga0207659_10254459 3300025926 Bacteria 1426
143 Ga0207644_10068140 3300025931 Bacteria 2595
144 Ga0207686_10007725 3300025934 Bacteria 5798
145 Ga0207704_10070141 3300025938 Bacteria 2218
146 Ga0207691_10006329 3300025940 Bacteria 11432
147 Ga0207691_10018380 3300025940 Bacteria 6623
148 Ga0207711_10085848 3300025941 Bacteria 2758
149 Ga0207711_10127092 3300025941 Bacteria 2282
150 Ga0207689_10024103 3300025942 Bacteria 5105
151 Ga0207689_10035550 3300025942 Bacteria 4139
152 Ga0207689_10051774 3300025942 Bacteria 3384
153 Ga0207689_10204035 3300025942 Bacteria 1632
154 Ga0207679_10001302 3300025945 Bacteria 15774
155 Ga0207679_10026199 3300025945 Bacteria 4019
156 Ga0207651_10005901 3300025960 Bacteria 6337
157 Ga0207651_10090114 3300025960 Bacteria 2241
158 Ga0207651_10192458 3300025960 Bacteria 1628
159 Ga0207677_10005432 3300026023 Bacteria 6918
160 Ga0207703_10010391 3300026035 Bacteria 7283
161 Ga0207703_10060196 3300026035 Bacteria 3104
162 Ga0207639_10144017 3300026041 Bacteria 1989
163 Ga0207702_10159968 3300026078 Bacteria 2056
164 Ga0207641_10004740 3300026088 Bacteria 11723
165 Ga0207641_10019771 3300026088 Bacteria 5528
166 Ga0207648_10005492 3300026089 Bacteria 12774
167 Ga0207648_10014531 3300026089 Bacteria 7270
168 Ga0207676_10005344 3300026095 Bacteria 9096
169 Ga0207676_10012014 3300026095 Bacteria 6196
170 Ga0207676_10538569 3300026095 Bacteria 1114
171 Ga0207674_10012183 3300026116 Bacteria 9623
172 Ga0207675_100002705 3300026118 Bacteria 17469
173 Ga0207675_100025067 3300026118 Bacteria 5551
174 Ga0207675_100141493 3300026118 Bacteria 2286
175 Ga0207675_100422358 3300026118 Bacteria 1317
176 Ga0207683_10019692 3300026121 Bacteria 5766
177 Ga0207683_10027888 3300026121 Bacteria 4881
178 Ga0207683_10142134 3300026121 Bacteria 2163
179 Ga0209966_1009098 3300027695 Bacteria 1769
180 Ga0207428_10006041 3300027907 Bacteria 11192
181 Ga0207428_10010110 3300027907 Bacteria 8439
182 Ga0207428_10033125 3300027907 Bacteria 4245
183 Ga0268266_10252617 3300028379 Bacteria 1631
184 Ga0268265_10104317 3300028380 Bacteria 2297
185 Ga0268265_10337746 3300028380 Bacteria 1370
186 Ga0268264_10116510 3300028381 Bacteria 2348
187 Ga0265326_10027462 3300028558 Bacteria 1622
188 Ga0307511_10089990 3300030521 Bacteria 2088
189 Ga0265770_1000029 3300030878 Bacteria 14245
190 Ga0265760_10000319 3300031090 Bacteria 13341
191 Ga0265327_10000014 3300031251 Bacteria 506288
192 Ga0307513_10034603 3300031456 Bacteria 5666
193 Ga0307509_10000781 3300031507 Bacteria 54552
194 Ga0307408_100098239 3300031548 Bacteria 2225
195 Ga0316575_10008231 3300031665 Bacteria 3793
196 Ga0316576_10067667 3300031727 Bacteria 2630
197 Ga0316578_10132739 3300031728 Bacteria 1499
198 Ga0307410_10016393 3300031852 Bacteria 4419
199 Ga0307410_10208564 3300031852 Bacteria 1496
200 Ga0307410_10244568 3300031852 Bacteria 1392
201 Ga0307411_10019521 3300032005 Bacteria 3917
202 Ga0373930_0010551 3300034816 Bacteria 1654
203 Ga0373943_0046886 3300035170 Bacteria 2111
204 Ga0316574_0085622 3300035398 Bacteria 2005
205 Ga0373931_0074792 3300035691 Bacteria 1856
206 Ga0373937_0139093 3300036401 Bacteria 2271
207 Ga0373937_0161106 3300036401 Bacteria 2103
208 Ga0316582_0035099 3300036647 Unclassified 3094
209 Ga0395898_0083739 3300037466 Bacteria 3074
210 Ga0395905_0084914 3300037471 Bacteria 2967
211 Ga0395901_0007734 3300038443 Bacteria 10842
212 Ga0395901_0183594 3300038443 Bacteria 2194
213 Ga0451841_0232065 3300041498 Bacteria 1370
214 Ga0451577_0000099 3300042876 Bacteria 191842
215 Ga0451577_0011331 3300042876 Bacteria 8441
216 Ga0451577_0027450 3300042876 Bacteria 5153
217 Ga0451577_0164788 3300042876 Bacteria 1997
218 Ga0451577_0418477 3300042876 Bacteria 1217
219 Ga0453684_0000350 3300044712 Bacteria 191841
220 Ga0453684_0022142 3300044712 Bacteria 9450
221 Ga0453684_0022787 3300044712 Bacteria 9273
222 Ga0453684_0094385 3300044712 Bacteria 3680
223 Ga0453684_0221891 3300044712 Unclassified 2189
224 Ga0451576_0027811 3300045051 Bacteria 6069
225 Ga0451576_0032229 3300045051 Bacteria 5584
226 Ga0451576_0109140 3300045051 Bacteria 2879
227 Ga0495617_049330 3300046452 Bacteria 1401
228 Ga0495592_0007814 3300046454 Bacteria 8016
229 Ga0495638_0006945 3300046460 Bacteria 8170
230 Ga0495651_0058960 3300046462 Bacteria 2945
231 Ga0495653_0021840 3300046463 Bacteria 5180
232 Ga0495650_0059082 3300046471 Bacteria 1545
233 Ga0495664_0019860 3300046477 Bacteria 3869
234 Ga0495583_0000090 3300046506 Bacteria 158988
235 Ga0495608_0028731 3300046511 Bacteria 3779
236 Ga0495652_0046143 3300046529 Bacteria 3742
237 Ga0495587_0017638 3300046536 Bacteria 4433
238 Ga0495645_0004668 3300046543 Bacteria 9351
239 Ga0495667_0021096 3300046559 Bacteria 4394
240 Ga0495625_0004921 3300046660 Bacteria 12434
241 Ga0495625_0014240 3300046660 Bacteria 6357
242 Ga0495635_0009713 3300046663 Bacteria 6725
243 Ga0495657_0080366 3300046675 Bacteria 2110
244 Ga0495599_0014465 3300046678 Bacteria 4887
245 Ga0495647_0008513 3300046681 Bacteria 3450
246 Ga0495649_0000203 3300046694 Bacteria 52758
247 Ga0495600_0141590 3300046809 Bacteria 1560
248 Ga0496101_0089499 3300048904 Bacteria 2288
249 Ga0496105_0286772 3300048908 Bacteria 1326
250 Ga0496107_0134062 3300048910 Bacteria 1830
251 Ga0496108_0057775 3300048911 Bacteria 3260
252 Ga0496110_0108035 3300048913 Bacteria 2498
253 Ga0496112_0133132 3300048915 Bacteria 2457
254 Ga0496113_0125064 3300048916 Bacteria 2013
255 Ga0496114_0002261 3300048917 Bacteria 14665
256 Ga0496114_0281056 3300048917 Bacteria 1468
257 Ga0496117_0001320 3300048920 Bacteria 36466
258 Ga0501071_0052611 3300049587 Bacteria 2937
259 Ga0501072_0105418 3300049588 Bacteria 2242
260 Ga0501225_0033132 3300049705 Bacteria 1421
261 Ga0501080_0057836 3300049742 Bacteria 3609
262 Ga0501044_0097036 3300049823 Bacteria 2969
263 nmdc:mga05p37_848_c1 3300050507 Bacteria 34369
264 nmdc:mga09592_46630_c1 3300050508 Bacteria 3651
265 nmdc:mga0qj67_33926_c1 3300050509 Bacteria 3984
266 nmdc:mga0qj67_7858_c1 3300050509 Bacteria 7879
267 nmdc:mga06r32_30269_c1 3300050510 Bacteria 5080
268 nmdc:mga06r32_6802_c1 3300050510 Bacteria 10280
269 nmdc:mga08y16_126791_c1 3300050511 Bacteria 2655
270 nmdc:mga08y16_137886_c1 3300050511 Bacteria 2536
271 nmdc:mga08y16_19207_c1 3300050511 Bacteria 7201
272 nmdc:mga08y16_5565_c1 3300050511 Bacteria 13194
273 nmdc:mga0a205_4918_c1 3300050515 Bacteria 11429
274 nmdc:mga0a205_56012_c1 3300050515 Bacteria 3807
275 Ga0495601_0015362 3300053077 Bacteria 4628
276 Ga0495595_0030077 3300053084 Bacteria 2434
277 Ga0495619_0033938 3300053085 Bacteria 3316
278 Ga0500568_0050582 3300053139 Bacteria 1637
279 Ga0500568_0053684 3300053139 Bacteria 1579
280 Ga0500622_0000763 3300053156 Bacteria 28106
281 Ga0500622_0002673 3300053156 Bacteria 12640
282 Ga0207696_1000069
283 JGI25156J39149_1000141
284 Ga0065704_10071233
285 Ga0065712_10013234
286 Ga0065707_10082586
287 Ga0070658_10090677
288 Ga0070690_100009211
289 Ga0070690_100039229
290 Ga0070670_100067875
291 Ga0070677_10073699
292 Ga0068869_100014729
293 Ga0068869_100123521
294 Ga0068868_100032925
295 Ga0068868_100207013
296 Ga0070689_100011292
297 Ga0070689_100041370
298 Ga0070689_100063924
299 Ga0070689_100141068
300 Ga0070691_10009003
301 Ga0070661_100081714
302 Ga0070669_100016548
303 Ga0070675_100046217
304 Ga0070675_100116265
305 Ga0070674_100071894
306 Ga0070674_100098561
307 Ga0070673_100003534
308 Ga0070688_100035990
309 Ga0070667_100010636
310 Ga0070667_100204565
311 Ga0070701_10034044
312 Ga0070705_100013628
313 Ga0070700_100011710
314 Ga0070694_100021562
315 Ga0068867_100016025
316 Ga0068867_100103292
317 Ga0070679_100025160
318 Ga0070684_100000750
319 Ga0070684_100011340
320 Ga0070672_100003687
321 Ga0070686_100002993
322 Ga0070696_100086162
323 Ga0070693_100002077
324 Ga0070693_100082903
325 Ga0070665_100002801
326 Ga0070665_100156123
327 Ga0070665_100386137
328 Ga0070704_100024729
329 Ga0068855_100043041
330 Ga0070664_100000919
331 Ga0070702_100001501
332 Ga0068852_100041192
333 Ga0068859_100028068
334 Ga0068864_100002391
335 Ga0068864_100024117
336 Ga0068861_100010500
337 Ga0068861_100191960
338 Ga0068863_100003225
339 Ga0068863_100199616
340 Ga0068858_100000826
341 Ga0068858_100035491
342 Ga0068858_100238599
343 Ga0068860_100070632
344 Ga0068860_100084282
345 Ga0068860_100187148
346 Ga0068860_100443637
347 Ga0068862_100008512
348 Ga0068862_100110517
349 Ga0097621_100028730
350 Ga0097621_100031013
351 Ga0068871_100071764
352 Ga0068871_100134894
353 Ga0068871_100159340
354 Ga0068871_100184249
355 Ga0075428_100004688
356 Ga0075428_100012400
357 Ga0075428_100017881
358 Ga0075430_100005463
359 Ga0075430_100027883
360 Ga0075430_100057328
361 Ga0075431_100021260
362 Ga0075431_100049798
363 Ga0075431_100230226
364 Ga0075433_10027027
365 Ga0075433_10087419
366 Ga0075429_100004438
367 Ga0075429_100069050
368 Ga0068865_100027034
369 Ga0097620_100028071
370 Ga0105250_10000006
371 Ga0111539_10004402
372 Ga0111539_10017497
373 Ga0111539_10027509
374 Ga0111539_10278027
375 Ga0105245_10022449
376 Ga0105247_10006648
377 Ga0114129_10002340
378 Ga0114129_10097359
379 Ga0105243_10134659
380 Ga0105242_10029596
381 Ga0105242_10089904
382 Ga0105248_10002350
383 Ga0105248_10007073
384 Ga0105248_10213739
385 Ga0105248_10281983
386 Ga0105249_10111149
387 Ga0105246_10009025
388 Ga0157374_10010883
389 Ga0157374_10043272
390 Ga0157378_10100337
391 Ga0163162_10009958
392 Ga0163162_10025235
393 Ga0163162_10164619
394 Ga0157375_10007695
395 Ga0157375_10029214
396 Ga0157375_10085988
397 Ga0163163_10002593
398 Ga0163163_10021329
399 Ga0157380_10022213
400 Ga0157380_10079087
401 Ga0157380_10152023
402 Ga0157380_10238270
403 Ga0157379_10000337
404 Ga0157379_10005235
405 Ga0157379_10087598
406 Ga0157376_10025928
407 Ga0157376_10042984
408 Ga0157376_10226451
409 Ga0209258_100442
410 Ga0209759_1003961
411 Ga0207656_10019533
412 Ga0207680_10033674
413 Ga0207645_10028319
414 Ga0207705_10055617
415 Ga0207705_10132020
416 Ga0207695_10148171
417 Ga0207660_10042924
418 Ga0207662_10015603
419 Ga0207649_10057745
420 Ga0207652_10065599
421 Ga0207681_10041662
422 Ga0207659_10002583
423 Ga0207659_10254459
424 Ga0207644_10068140
425 Ga0207686_10007725
426 Ga0207704_10070141
427 Ga0207691_10006329
428 Ga0207691_10018380
429 Ga0207711_10085848
430 Ga0207711_10127092
431 Ga0207689_10024103
432 Ga0207689_10035550
433 Ga0207689_10051774
434 Ga0207689_10204035
435 Ga0207679_10001302
436 Ga0207679_10026199
437 Ga0207651_10005901
438 Ga0207651_10090114
439 Ga0207651_10192458
440 Ga0207677_10005432
441 Ga0207703_10010391
442 Ga0207703_10060196
443 Ga0207639_10144017
444 Ga0207702_10159968
445 Ga0207641_10004740
446 Ga0207641_10019771
447 Ga0207648_10005492
448 Ga0207648_10014531
449 Ga0207676_10005344
450 Ga0207676_10012014
451 Ga0207676_10538569
452 Ga0207674_10012183
453 Ga0207675_100002705
454 Ga0207675_100025067
455 Ga0207675_100141493
456 Ga0207675_100422358
457 Ga0207683_10019692
458 Ga0207683_10027888
459 Ga0207683_10142134
460 Ga0209966_1009098
461 Ga0207428_10006041
462 Ga0207428_10010110
463 Ga0207428_10033125
464 Ga0268266_10252617
465 Ga0268265_10104317
466 Ga0268265_10337746
467 Ga0268264_10116510
468 Ga0265326_10027462
469 Ga0307511_10089990
470 Ga0265770_1000029
471 Ga0265760_10000319
472 Ga0265327_10000014
473 Ga0307513_10034603
474 Ga0307509_10000781
475 Ga0307408_100098239
476 Ga0316575_10008231
477 Ga0316576_10067667
478 Ga0316578_10132739
479 Ga0307410_10016393
480 Ga0307410_10208564
481 Ga0307410_10244568
482 Ga0307411_10019521
483 Ga0373930_0010551
484 Ga0373943_0046886
485 Ga0316574_0085622
486 Ga0373931_0074792
487 Ga0373937_0139093
488 Ga0373937_0161106
489 Ga0316582_0035099
490 Ga0395898_0083739
491 Ga0395905_0084914
492 Ga0395901_0007734
493 Ga0395901_0183594
494 Ga0451841_0232065
495 Ga0451577_0000099
496 Ga0451577_0011331
497 Ga0451577_0027450
498 Ga0451577_0164788
499 Ga0451577_0418477
500 Ga0453684_0000350
501 Ga0453684_0022142
502 Ga0453684_0022787
503 Ga0453684_0094385
504 Ga0453684_0221891
505 Ga0451576_0027811
506 Ga0451576_0032229
507 Ga0451576_0109140
508 Ga0495617_049330
509 Ga0495592_0007814
510 Ga0495638_0006945
511 Ga0495651_0058960
512 Ga0495653_0021840
513 Ga0495650_0059082
514 Ga0495664_0019860
515 Ga0495583_0000090
516 Ga0495608_0028731
517 Ga0495652_0046143
518 Ga0495587_0017638
519 Ga0495645_0004668
520 Ga0495667_0021096
521 Ga0495625_0004921
522 Ga0495625_0014240
523 Ga0495635_0009713
524 Ga0495657_0080366
525 Ga0495599_0014465
526 Ga0495647_0008513
527 Ga0495649_0000203
528 Ga0495600_0141590
529 Ga0496101_0089499
530 Ga0496105_0286772
531 Ga0496107_0134062
532 Ga0496108_0057775
533 Ga0496110_0108035
534 Ga0496112_0133132
535 Ga0496113_0125064
536 Ga0496114_0002261
537 Ga0496114_0281056
538 Ga0496117_0001320
539 Ga0501071_0052611
540 Ga0501072_0105418
541 Ga0501225_0033132
542 Ga0501080_0057836
543 Ga0501044_0097036
544 nmdc:mga05p37_848_c1
545 nmdc:mga09592_46630_c1
546 nmdc:mga0qj67_33926_c1
547 nmdc:mga0qj67_7858_c1
548 nmdc:mga06r32_30269_c1
549 nmdc:mga06r32_6802_c1
550 nmdc:mga08y16_126791_c1
551 nmdc:mga08y16_137886_c1
552 nmdc:mga08y16_19207_c1
553 nmdc:mga08y16_5565_c1
554 nmdc:mga0a205_4918_c1
555 nmdc:mga0a205_56012_c1
556 Ga0495601_0015362
557 Ga0495595_0030077
558 Ga0495619_0033938
559 Ga0500568_0050582
560 Ga0500568_0053684
561 Ga0500622_0000763
562 Ga0500622_0002673

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03054

tRNA_Me_trans

tRNA methyl transferase HUP domain

36

230

0.98

PF20258

tRNA_Me_trans_C

Aminomethyltransferase beta-barrel domain

311

387

0.97

PF20259

tRNA_Me_trans_M

tRNA methyl transferase PRC-barrel domain

234

302

0.97

PF02540

NAD_synthase

NAD synthase

23

162

0.69

PF02568

ThiI

Thiamine biosynthesis protein (ThiI)

34

165

0.62

Structural Annotation

Top 5 Hits

ID Description Score Start End
2hma-assembly1.cif.gz_A-2 the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmu from streptococcus pneumoniae 0.9517 4 369
2der-assembly1.cif.gz_A cocrystal structure of an rna sulfuration enzyme mnma and trna-glu in the initial trna binding state 0.9464 3 369
2deu-assembly2.cif.gz_B cocrystal structure of an rna sulfuration enzyme mnma and trna-glu in the adenylated intermediate state 0.9441 3 369
2der-assembly1.cif.gz_A cocrystal structure of an rna sulfuration enzyme mnma and trna-glu in the initial trna binding state 0.9437 3 369
2deu-assembly2.cif.gz_B cocrystal structure of an rna sulfuration enzyme mnma and trna-glu in the adenylated intermediate state 0.9416 3 369
ID Description Score Start End Superfamily
2hmaA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.96 4 205 3.40.50.620
af_Q9W5B6_2_218_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.955 4 205 3.40.50.620
af_Q503J2_4_234_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9472 4 204 3.40.50.620
2derA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9457 3 186 3.40.50.620
af_Q17440_1_218_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9447 4 204 3.40.50.620
ID Description Score Start End GO Terms
AF-A0A2V9C1I3-F1-model_v4 tRNA 2-thiouridine(34) synthase MnmA 0.9796 105 197 GO:0002143
AF-A0A2M7PUB2-F1-model_v4 tRNA-uridine 2-sulfurtransferase (EC 2.8.1.13) 0.9794 3 190 GO:0002143
GO:0103016
AF-A0A534A254-F1-model_v4 tRNA 2-thiouridine(34) synthase MnmA 0.9766 3 123 GO:0002143
AF-A0A496M753-F1-model_v4 deleted 0.9741 4 183
AF-A0A2S5T5A1-F1-model_v4 tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) 0.9739 4 365 GO:0000049
GO:0002143
GO:0005524
GO:0005737
GO:0103016

Map