F379571

General Info

Members Datasets Scaffolds Average Seq Length
274 197 548 198

Family's Representative Sequence

Representative Sequence 3300005530|Ga0070679_100008839|Ga0070679_1000088396
Length 225
Sequence MGYHPKLYAFAPHHSIRSFMPIRGPRLRVIRRLGVQLPGLTRKDGERRPYPPGQHGPTGSKRRKTSMFRRLLEEKQKVRFNYGVTETQLRRYFAEAQRLPGKTGDNLLGLLERRLDNVVFRLGFAPTIPAARQLVSHGHVRINGKKVDRASFLVEVGETVGLPEGKIRERAGVLESVSRGPQVRIPGYLALDPDDKFTGRVIGTPSRADIPFVVNEAAIVEFYAR

Samples

Sample ID Description Type Environment
1 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
4 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
5 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
6 3300004798 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
11 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
12 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
15 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
16 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
17 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
18 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
19 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
22 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
23 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
24 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
27 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
28 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
29 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
30 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
31 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
32 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
33 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
34 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
39 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
40 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
41 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
42 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
43 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
48 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
50 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
52 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
73 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
74 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
75 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
76 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
77 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
78 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
79 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
80 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
81 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
82 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
83 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
84 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
85 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
86 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
87 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
88 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
89 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
90 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
91 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
92 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
93 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
94 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
95 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
96 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
97 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
98 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
99 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
100 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
101 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
102 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
103 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
104 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
105 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
106 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
107 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
108 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
109 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
110 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
111 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
112 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
113 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
114 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
115 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
116 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
117 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
118 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
119 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
120 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
121 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
122 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
123 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
124 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
125 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
126 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
127 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
128 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
129 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
130 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
131 3300049527 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
132 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
133 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
134 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
135 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
141 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
142 3300049765 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought Metagenome Rhizosphere
143 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
146 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
147 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
148 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
149 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
150 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
151 2547132512 Azospira oryzae 6a3 Isolate Unclassified
152 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
153 2563366752 Paenibacillus pini JCM 16418 Isolate Rhizosphere
154 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
155 2571042588 Paenibacillus zanthoxyli JH29 Isolate Unclassified
156 2576861424 Paenibacillus sabinae T27 Isolate Rhizosphere
157 2579778775 Paenibacillus durus P3L-5 Isolate Unclassified
158 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
159 2619619294 Paenibacillus durus ATCC 35681 Isolate Unclassified
160 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
161 2728369359 Paenibacillus polymyxa YC0136 Isolate Rhizosphere
162 2751185905 Paenibacillus kribbensis 6hRe76 Isolate Unclassified
163 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
164 2802428803 Paenibacillus peoriae NMA1017 Isolate Rhizosphere
165 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
166 2864733723 Paenibacillus sp. JGP012 Isolate Rhizosphere
167 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
168 2881636855 Paenibacillus sp. 7197 Isolate Rhizosphere
169 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
170 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
171 2889276214 Paenibacillus sp. PvR133 Isolate Rhizosphere
172 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
173 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
174 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
175 2904595352 Paenibacillus sp. 1182 Isolate Unclassified
176 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
177 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
178 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
179 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
180 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
181 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
182 2939702853 Paenibacillus sp. PvR008 Isolate Rhizosphere
183 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
184 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
185 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
186 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
187 2971511577 Paenibacillus apii 7124 Isolate Rhizosphere
188 2980176882 Paenibacillus apii 7028 Isolate Rhizosphere
189 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
190 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
191 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
192 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
193 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere
194 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
195 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
196 8055632911 Paenibacillus radicibacter N1-5-1-14 Isolate Unclassified
197 8057733483 Paenibacillus apiarius MW-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 80.66
Metatranscriptomes 1.82
Isolates 17.52

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.74
Nodule 0.36
Rhizoplane 1.82
Rhizosphere 77.37
Stem 0
Stem Tuber 0
Unclassified 10.22

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070679_100008839 3300005530 Bacteria 9505
2 rootL2_10364188 3300003322 Unclassified 1046
3 Ga0006562J51391_1002221 3300003578 Bacteria 798
4 Ga0055535_1006782 3300003761 Bacteria 2271
5 Ga0055541_1000212 3300003841 Bacteria 24534
6 Ga0058859_11778114 3300004798 Bacteria 3341
7 Ga0070658_10023873 3300005327 Bacteria 4905
8 Ga0070658_10110498 3300005327 Bacteria 2277
9 Ga0070683_100019641 3300005329 Bacteria 6003
10 Ga0070683_100073769 3300005329 Unclassified 3186
11 Ga0070680_100049791 3300005336 Bacteria 3416
12 Ga0070680_100124260 3300005336 Bacteria 2155
13 Ga0070680_100535722 3300005336 Bacteria 1003
14 Ga0070687_100536941 3300005343 Unclassified 793
15 Ga0070661_100485157 3300005344 Bacteria 987
16 Ga0070668_100019015 3300005347 Bacteria 5163
17 Ga0070659_100441179 3300005366 Bacteria 1103
18 Ga0070714_100002472 3300005435 Bacteria 13634
19 Ga0070714_100586280 3300005435 Bacteria 1070
20 Ga0070713_100187283 3300005436 Bacteria 1863
21 Ga0070701_10086419 3300005438 Unclassified 1709
22 Ga0070700_100212021 3300005441 Bacteria 1367
23 Ga0070663_100552460 3300005455 Bacteria 963
24 Ga0070663_100821291 3300005455 Bacteria 798
25 Ga0070662_100000136 3300005457 Bacteria 41314
26 Ga0070681_10050553 3300005458 Unclassified 4147
27 Ga0070681_10250364 3300005458 Bacteria 1684
28 Ga0070681_10286391 3300005458 Bacteria 1558
29 Ga0070681_10789909 3300005458 Bacteria 866
30 Ga0070685_10000298 3300005466 Bacteria 31379
31 Ga0070707_100297399 3300005468 Unclassified 1569
32 Ga0070707_100698851 3300005468 Bacteria 977
33 Ga0070707_100788581 3300005468 Bacteria 914
34 Ga0070698_100341347 3300005471 Bacteria 1429
35 Ga0070698_101041697 3300005471 Bacteria 766
36 Ga0070679_100035388 3300005530 Bacteria 4954
37 Ga0070679_100099600 3300005530 Bacteria 2893
38 Ga0070679_100125086 3300005530 Bacteria 2554
39 Ga0070684_100534735 3300005535 Bacteria 1087
40 Ga0068853_100017615 3300005539 Bacteria 5896
41 Ga0070686_100000083 3300005544 Bacteria 68787
42 Ga0070696_100000852 3300005546 Bacteria 19690
43 Ga0070665_100000046 3300005548 Bacteria 271885
44 Ga0070665_100166119 3300005548 Bacteria 2209
45 Ga0068856_100221934 3300005614 Bacteria 1905
46 Ga0068852_100053972 3300005616 Bacteria 3462
47 Ga0068864_100288010 3300005618 Bacteria 1535
48 Ga0068861_100186361 3300005719 Bacteria 1731
49 Ga0068861_100610570 3300005719 Bacteria 1002
50 Ga0068862_100217322 3300005844 Bacteria 1729
51 Ga0081539_10006420 3300005985 Bacteria 11291
52 Ga0075431_100499165 3300006847 Bacteria 1208
53 Ga0075436_100220358 3300006914 Bacteria 1346
54 Ga0105240_10044877 3300009093 Bacteria 5611
55 Ga0105241_10553887 3300009174 Bacteria 1033
56 Ga0105248_11009894 3300009177 Bacteria 940
57 Ga0105238_10000015 3300009551 Bacteria 241590
58 Ga0105238_10031318 3300009551 Bacteria 5413
59 Ga0105249_10834465 3300009553 Unclassified 987
60 Ga0157373_10048918 3300013100 Bacteria 3014
61 Ga0157370_10061267 3300013104 Bacteria 3571
62 Ga0157370_10082410 3300013104 Bacteria 3026
63 Ga0157372_10010954 3300013307 Bacteria 9650
64 Ga0157372_10554207 3300013307 Bacteria 1340
65 Ga0209784_100183 3300025224 Bacteria 50174
66 Ga0209566_100054 3300025225 Bacteria 221422
67 Ga0209566_100587 3300025225 Bacteria 23195
68 Ga0209566_102844 3300025225 Bacteria 2937
69 Ga0209437_100774 3300025233 Bacteria 15126
70 Ga0209258_101055 3300025242 Bacteria 12066
71 Ga0209675_1002137 3300025291 Bacteria 10427
72 Ga0209676_1016377 3300025292 Bacteria 2680
73 Ga0209025_1005210 3300025294 Bacteria 10726
74 Ga0209025_1043091 3300025294 Bacteria 1907
75 Ga0207655_1021315 3300025728 Bacteria 3293
76 Ga0207705_10012141 3300025909 Bacteria 6225
77 Ga0207705_10125850 3300025909 Bacteria 1905
78 Ga0207705_10419557 3300025909 Bacteria 1036
79 Ga0207705_10536034 3300025909 Unclassified 910
80 Ga0207684_11161816 3300025910 Unclassified 640
81 Ga0207707_10003921 3300025912 Bacteria 13212
82 Ga0207707_10006959 3300025912 Bacteria 9862
83 Ga0207707_10173858 3300025912 Bacteria 1882
84 Ga0207695_10052154 3300025913 Bacteria 4288
85 Ga0207695_10447694 3300025913 Bacteria 1175
86 Ga0207663_10191161 3300025916 Bacteria 1470
87 Ga0207660_10016085 3300025917 Bacteria 4946
88 Ga0207660_10020502 3300025917 Bacteria 4437
89 Ga0207660_10060226 3300025917 Bacteria 2728
90 Ga0207662_10436131 3300025918 Unclassified 894
91 Ga0207652_10046276 3300025921 Bacteria 3712
92 Ga0207652_10052139 3300025921 Bacteria 3510
93 Ga0207652_10096663 3300025921 Bacteria 2602
94 Ga0207652_10436364 3300025921 Bacteria 1181
95 Ga0207646_10171236 3300025922 Unclassified 1961
96 Ga0207646_10468357 3300025922 Bacteria 1136
97 Ga0207694_10000017 3300025924 Bacteria 342100
98 Ga0207700_10586063 3300025928 Bacteria 992
99 Ga0207664_10001926 3300025929 Bacteria 13635
100 Ga0207664_10595551 3300025929 Unclassified 993
101 Ga0207706_10000273 3300025933 Bacteria 56145
102 Ga0207661_10010764 3300025944 Bacteria 6595
103 Ga0207661_10042019 3300025944 Unclassified 3603
104 Ga0207678_10746984 3300026067 Bacteria 862
105 Ga0207676_10256405 3300026095 Bacteria 1577
106 Ga0207675_100218234 3300026118 Bacteria 1837
107 Ga0207675_100367816 3300026118 Unclassified 1412
108 Ga0207698_10072542 3300026142 Bacteria 2737
109 Ga0268266_10000170 3300028379 Bacteria 119083
110 Ga0268266_10128194 3300028379 Bacteria 2267
111 Ga0265332_10000010 3300031238 Bacteria 289041
112 Ga0307408_100242917 3300031548 Unclassified 1481
113 Ga0307408_100460683 3300031548 Bacteria 1105
114 Ga0307405_10119847 3300031731 Bacteria 1799
115 Ga0307405_10210167 3300031731 Unclassified 1420
116 Ga0307410_10125849 3300031852 Bacteria 1876
117 Ga0307410_10279595 3300031852 Bacteria 1309
118 Ga0307406_10278550 3300031901 Unclassified 1274
119 Ga0307406_10510071 3300031901 Bacteria 977
120 Ga0307406_10936764 3300031901 Unclassified 739
121 Ga0307407_10117414 3300031903 Bacteria 1681
122 Ga0307407_10264042 3300031903 Unclassified 1185
123 Ga0307407_10451278 3300031903 Bacteria 933
124 Ga0307407_10604439 3300031903 Bacteria 817
125 Ga0307409_100058980 3300031995 Bacteria 2984
126 Ga0307409_101264397 3300031995 Bacteria 762
127 Ga0307416_100191155 3300032002 Bacteria 1931
128 Ga0307416_100626272 3300032002 Bacteria 1158
129 Ga0307416_100778222 3300032002 Unclassified 1051
130 Ga0307414_10514731 3300032004 Unclassified 1061
131 Ga0307414_10516363 3300032004 Unclassified 1059
132 Ga0373930_0007358 3300034816 Bacteria 1893
133 Ga0373959_0000193 3300034820 Bacteria 13629
134 Ga0373934_0188189 3300035086 Bacteria 849
135 Ga0373946_0291152 3300035171 Unclassified 805
136 Ga0395899_0039275 3300037312 Bacteria 3543
137 Ga0395899_0049953 3300037312 Bacteria 3107
138 Ga0395905_0022040 3300037471 Bacteria 6026
139 Ga0395905_0039915 3300037471 Bacteria 4403
140 Ga0395905_0554066 3300037471 Bacteria 1051
141 Ga0395901_0003423 3300038443 Bacteria 15991
142 Ga0395901_0012699 3300038443 Bacteria 8544
143 Ga0436365_0308250 3300039437 Bacteria 1280
144 Ga0436365_0412461 3300039437 Bacteria 1894
145 Ga0439439_0024967 3300041406 Bacteria 1502
146 Ga0439449_0000010 3300042007 Bacteria 58004
147 Ga0439449_0040980 3300042007 Bacteria 1722
148 Ga0439462_0000966 3300042015 Bacteria 6113
149 Ga0451577_0021060 3300042876 Bacteria 5975
150 Ga0466969_0019847 3300044656 Bacteria 3486
151 Ga0466969_0205294 3300044656 Bacteria 898
152 Ga0466966_0153401 3300044684 Bacteria 1404
153 Ga0466961_0002367 3300044693 Bacteria 11710
154 Ga0466961_0027017 3300044693 Bacteria 3690
155 Ga0453684_0000532 3300044712 Bacteria 145255
156 Ga0453684_0003133 3300044712 Bacteria 38076
157 Ga0466968_0005835 3300044735 Bacteria 4622
158 Ga0466959_0002329 3300045049 Bacteria 12127
159 Ga0451576_1089070 3300045051 Unclassified 836
160 Ga0495591_065187 3300046458 Bacteria 958
161 Ga0495651_0325711 3300046462 Unclassified 1023
162 Ga0495664_0007964 3300046477 Bacteria 5900
163 Ga0495630_0221589 3300046517 Bacteria 1444
164 Ga0495637_0116958 3300046520 Bacteria 1029
165 Ga0495666_0275225 3300046526 Bacteria 764
166 Ga0495657_0165093 3300046675 Bacteria 1367
167 Ga0495658_0008357 3300046683 Bacteria 5125
168 Ga0495624_0462982 3300046690 Bacteria 759
169 Ga0495660_0043817 3300046810 Bacteria 2465
170 Ga0495581_0104017 3300047315 Bacteria 1650
171 Ga0495674_0005186 3300047319 Bacteria 12515
172 Ga0495672_0001505 3300047320 Bacteria 22838
173 Ga0495675_0135715 3300047444 Bacteria 1528
174 Ga0495684_0142431 3300047471 Bacteria 1797
175 Ga0495626_0099646 3300048091 Bacteria 1268
176 Ga0496110_0024188 3300048913 Bacteria 5173
177 Ga0496111_0369476 3300048914 Bacteria 1061
178 Ga0496112_0756332 3300048915 Bacteria 898
179 Ga0496115_0725059 3300048918 Unclassified 780
180 Ga0496116_0018777 3300048919 Bacteria 5313
181 Ga0496116_0059858 3300048919 Bacteria 2473
182 Ga0496116_0076259 3300048919 Bacteria 2101
183 Ga0496117_0008233 3300048920 Bacteria 9937
184 Ga0496118_0028211 3300048921 Bacteria 4734
185 Ga0496119_0004698 3300048922 Bacteria 13436
186 Ga0496121_0325806 3300048924 Bacteria 1032
187 Ga0496121_0395085 3300048924 Bacteria 907
188 Ga0496122_0006281 3300048925 Bacteria 13716
189 Ga0496122_0018675 3300048925 Bacteria 6385
190 Ga0496122_0051603 3300048925 Bacteria 3123
191 Ga0496123_0009804 3300048926 Bacteria 8554
192 Ga0496123_0010754 3300048926 Bacteria 8036
193 Ga0496124_0000620 3300048927 Bacteria 59508
194 Ga0496124_0064432 3300048927 Bacteria 3059
195 Ga0496124_0135266 3300048927 Bacteria 1952
196 Ga0496125_0001772 3300048928 Bacteria 29886
197 Ga0496125_0003260 3300048928 Bacteria 19981
198 Ga0496125_0024533 3300048928 Bacteria 5544
199 Ga0496126_0027462 3300048929 Bacteria 5435
200 Ga0501305_034891 3300049161 Bacteria 799
201 Ga0501311_029314 3300049527 Bacteria 789
202 Ga0501311_032025 3300049527 Bacteria 765
203 Ga0501033_0538250 3300049570 Bacteria 805
204 Ga0501034_0038657 3300049571 Bacteria 4832
205 Ga0501036_0121965 3300049572 Bacteria 2201
206 Ga0501037_0089395 3300049573 Bacteria 2229
207 Ga0501038_0172500 3300049574 Bacteria 1749
208 Ga0501043_0098251 3300049579 Bacteria 2301
209 Ga0501043_0149186 3300049579 Bacteria 1830
210 Ga0501046_0097401 3300049580 Bacteria 2259
211 Ga0501047_0005124 3300049581 Bacteria 12294
212 Ga0501047_0006865 3300049581 Bacteria 10697
213 Ga0501070_0060860 3300049586 Bacteria 3129
214 Ga0501070_0337605 3300049586 Bacteria 1224
215 Ga0501072_0072615 3300049588 Bacteria 2720
216 Ga0501268_026593 3300049765 Unclassified 1024
217 Ga0501035_0000594 3300049822 Bacteria 39868
218 Ga0501035_0921144 3300049822 Bacteria 691
219 Ga0501044_0002324 3300049823 Bacteria 21666
220 Ga0501044_0062525 3300049823 Bacteria 3805
221 Ga0501044_0469906 3300049823 Bacteria 1162
222 Ga0501045_0226768 3300049824 Bacteria 1391
223 nmdc:mga06r32_478995_c1 3300050510 Bacteria 1223
224 Ga0500643_000549 3300053087 Bacteria 26157
225 Ga0501084_0717400 3300054114 Bacteria 843
226 Ga0590071_052101 3300059421 Unclassified 993
227 2524186465 2524023129 Bacteria 6762600
228 2548848122 2547132512 Bacteria 3416496
229 2550900919 2548877040 Bacteria 7507281
230 2563927063 2563366752 Bacteria 4961801
231 2571528007 2571042143 Bacteria 6986194
232 2573036819 2571042588 Bacteria 5045676
233 2578336738 2576861424 Bacteria 5270569
234 2580933315 2579778775 Bacteria 5360914
235 2601638651 2600255286 Bacteria 5390125
236 2621274948 2619619294 Bacteria 5575484
237 2728532499 2728368933 Bacteria 7044283
238 2730135466 2728369359 Bacteria 5621728
239 2753809731 2751185905 Bacteria 6142767
240 2793184564 2791355222 Bacteria 5898266
241 2802437083 2802428803 Bacteria 5806948
242 2821114575 2821111986 Bacteria 6894338
243 2864737540 2864733723 Bacteria 6770668
244 2865004195 2865002811 Bacteria 6333767
245 2881640409 2881636855 Bacteria 5205297
246 2885527530 2885526491 Bacteria 7164189
247 2889046722 2889042446 Bacteria 7618936
248 2889280739 2889276214 Bacteria 5979355
249 2904114890 2904113452 Bacteria 7796941
250 2904163310 2904162308 Bacteria 7086713
251 2904493543 2904490793 Bacteria 7046938
252 2904598469 2904595352 Bacteria 6124848
253 2907205693 2907202186 Bacteria 6632024
254 2919162708 2919160200 Bacteria 6929020
255 2929210468 2929206907 Bacteria 5918291
256 2931390170 2931384279 Bacteria 7299545
257 2938649809 2938649242 Bacteria 7118381
258 2939679809 2939679117 Bacteria 6921672
259 2939706714 2939702853 Bacteria 5139229
260 2945997601 2945991243 Bacteria 7008369
261 2946053817 2946053406 Bacteria 6978655
262 2968561234 2968558590 Bacteria 6956864
263 2971405742 2971403814 Bacteria 7370929
264 2971515610 2971511577 Bacteria 5404012
265 2980180113 2980176882 Bacteria 5397533
266 2988229374 2988225383 Bacteria 7221625
267 2996639032 2996632988 Bacteria 6921523
268 648170869 648028048 Bacteria 5394884
269 8002322276 8002317523 Bacteria 8051857
270 8046997732 8046991243 Bacteria 8497463
271 8054467932 8054465665 Bacteria 7323556
272 8054795816 8054795415 Bacteria 9785225
273 8055634962 8055632911 Bacteria 5283357
274 8057737709 8057733483 Bacteria 6578323
275 Ga0070679_100008839
276 rootL2_10364188
277 Ga0006562J51391_1002221
278 Ga0055535_1006782
279 Ga0055541_1000212
280 Ga0058859_11778114
281 Ga0070658_10023873
282 Ga0070658_10110498
283 Ga0070683_100019641
284 Ga0070683_100073769
285 Ga0070680_100049791
286 Ga0070680_100124260
287 Ga0070680_100535722
288 Ga0070687_100536941
289 Ga0070661_100485157
290 Ga0070668_100019015
291 Ga0070659_100441179
292 Ga0070714_100002472
293 Ga0070714_100586280
294 Ga0070713_100187283
295 Ga0070701_10086419
296 Ga0070700_100212021
297 Ga0070663_100552460
298 Ga0070663_100821291
299 Ga0070662_100000136
300 Ga0070681_10050553
301 Ga0070681_10250364
302 Ga0070681_10286391
303 Ga0070681_10789909
304 Ga0070685_10000298
305 Ga0070707_100297399
306 Ga0070707_100698851
307 Ga0070707_100788581
308 Ga0070698_100341347
309 Ga0070698_101041697
310 Ga0070679_100035388
311 Ga0070679_100099600
312 Ga0070679_100125086
313 Ga0070684_100534735
314 Ga0068853_100017615
315 Ga0070686_100000083
316 Ga0070696_100000852
317 Ga0070665_100000046
318 Ga0070665_100166119
319 Ga0068856_100221934
320 Ga0068852_100053972
321 Ga0068864_100288010
322 Ga0068861_100186361
323 Ga0068861_100610570
324 Ga0068862_100217322
325 Ga0081539_10006420
326 Ga0075431_100499165
327 Ga0075436_100220358
328 Ga0105240_10044877
329 Ga0105241_10553887
330 Ga0105248_11009894
331 Ga0105238_10000015
332 Ga0105238_10031318
333 Ga0105249_10834465
334 Ga0157373_10048918
335 Ga0157370_10061267
336 Ga0157370_10082410
337 Ga0157372_10010954
338 Ga0157372_10554207
339 Ga0209784_100183
340 Ga0209566_100054
341 Ga0209566_100587
342 Ga0209566_102844
343 Ga0209437_100774
344 Ga0209258_101055
345 Ga0209675_1002137
346 Ga0209676_1016377
347 Ga0209025_1005210
348 Ga0209025_1043091
349 Ga0207655_1021315
350 Ga0207705_10012141
351 Ga0207705_10125850
352 Ga0207705_10419557
353 Ga0207705_10536034
354 Ga0207684_11161816
355 Ga0207707_10003921
356 Ga0207707_10006959
357 Ga0207707_10173858
358 Ga0207695_10052154
359 Ga0207695_10447694
360 Ga0207663_10191161
361 Ga0207660_10016085
362 Ga0207660_10020502
363 Ga0207660_10060226
364 Ga0207662_10436131
365 Ga0207652_10046276
366 Ga0207652_10052139
367 Ga0207652_10096663
368 Ga0207652_10436364
369 Ga0207646_10171236
370 Ga0207646_10468357
371 Ga0207694_10000017
372 Ga0207700_10586063
373 Ga0207664_10001926
374 Ga0207664_10595551
375 Ga0207706_10000273
376 Ga0207661_10010764
377 Ga0207661_10042019
378 Ga0207678_10746984
379 Ga0207676_10256405
380 Ga0207675_100218234
381 Ga0207675_100367816
382 Ga0207698_10072542
383 Ga0268266_10000170
384 Ga0268266_10128194
385 Ga0265332_10000010
386 Ga0307408_100242917
387 Ga0307408_100460683
388 Ga0307405_10119847
389 Ga0307405_10210167
390 Ga0307410_10125849
391 Ga0307410_10279595
392 Ga0307406_10278550
393 Ga0307406_10510071
394 Ga0307406_10936764
395 Ga0307407_10117414
396 Ga0307407_10264042
397 Ga0307407_10451278
398 Ga0307407_10604439
399 Ga0307409_100058980
400 Ga0307409_101264397
401 Ga0307416_100191155
402 Ga0307416_100626272
403 Ga0307416_100778222
404 Ga0307414_10514731
405 Ga0307414_10516363
406 Ga0373930_0007358
407 Ga0373959_0000193
408 Ga0373934_0188189
409 Ga0373946_0291152
410 Ga0395899_0039275
411 Ga0395899_0049953
412 Ga0395905_0022040
413 Ga0395905_0039915
414 Ga0395905_0554066
415 Ga0395901_0003423
416 Ga0395901_0012699
417 Ga0436365_0308250
418 Ga0436365_0412461
419 Ga0439439_0024967
420 Ga0439449_0000010
421 Ga0439449_0040980
422 Ga0439462_0000966
423 Ga0451577_0021060
424 Ga0466969_0019847
425 Ga0466969_0205294
426 Ga0466966_0153401
427 Ga0466961_0002367
428 Ga0466961_0027017
429 Ga0453684_0000532
430 Ga0453684_0003133
431 Ga0466968_0005835
432 Ga0466959_0002329
433 Ga0451576_1089070
434 Ga0495591_065187
435 Ga0495651_0325711
436 Ga0495664_0007964
437 Ga0495630_0221589
438 Ga0495637_0116958
439 Ga0495666_0275225
440 Ga0495657_0165093
441 Ga0495658_0008357
442 Ga0495624_0462982
443 Ga0495660_0043817
444 Ga0495581_0104017
445 Ga0495674_0005186
446 Ga0495672_0001505
447 Ga0495675_0135715
448 Ga0495684_0142431
449 Ga0495626_0099646
450 Ga0496110_0024188
451 Ga0496111_0369476
452 Ga0496112_0756332
453 Ga0496115_0725059
454 Ga0496116_0018777
455 Ga0496116_0059858
456 Ga0496116_0076259
457 Ga0496117_0008233
458 Ga0496118_0028211
459 Ga0496119_0004698
460 Ga0496121_0325806
461 Ga0496121_0395085
462 Ga0496122_0006281
463 Ga0496122_0018675
464 Ga0496122_0051603
465 Ga0496123_0009804
466 Ga0496123_0010754
467 Ga0496124_0000620
468 Ga0496124_0064432
469 Ga0496124_0135266
470 Ga0496125_0001772
471 Ga0496125_0003260
472 Ga0496125_0024533
473 Ga0496126_0027462
474 Ga0501305_034891
475 Ga0501311_029314
476 Ga0501311_032025
477 Ga0501033_0538250
478 Ga0501034_0038657
479 Ga0501036_0121965
480 Ga0501037_0089395
481 Ga0501038_0172500
482 Ga0501043_0098251
483 Ga0501043_0149186
484 Ga0501046_0097401
485 Ga0501047_0005124
486 Ga0501047_0006865
487 Ga0501070_0060860
488 Ga0501070_0337605
489 Ga0501072_0072615
490 Ga0501268_026593
491 Ga0501035_0000594
492 Ga0501035_0921144
493 Ga0501044_0002324
494 Ga0501044_0062525
495 Ga0501044_0469906
496 Ga0501045_0226768
497 nmdc:mga06r32_478995_c1
498 Ga0500643_000549
499 Ga0501084_0717400
500 Ga0590071_052101
501 2524186465
502 2548848122
503 2550900919
504 2563927063
505 2571528007
506 2573036819
507 2578336738
508 2580933315
509 2601638651
510 2621274948
511 2728532499
512 2730135466
513 2753809731
514 2793184564
515 2802437083
516 2821114575
517 2864737540
518 2865004195
519 2881640409
520 2885527530
521 2889046722
522 2889280739
523 2904114890
524 2904163310
525 2904493543
526 2904598469
527 2907205693
528 2919162708
529 2929210468
530 2931390170
531 2938649809
532 2939679809
533 2939706714
534 2945997601
535 2946053817
536 2968561234
537 2971405742
538 2971515610
539 2980180113
540 2988229374
541 2996639032
542 648170869
543 8002322276
544 8046997732
545 8054467932
546 8054795816
547 8055634962
548 8057737709

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01479

S4

S4 domain

113

160

0.98

PF00163

Ribosomal_S4

Ribosomal protein S4/S9 N-terminal domain

21

112

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
4v5z-assembly1.cif.gz_Ad structure of a mammalian 80s ribosome obtained by docking homology models of the rna and proteins into an 8.7 a cryo-em map 0.9732 51 152
4v5z-assembly1.cif.gz_Ad structure of a mammalian 80s ribosome obtained by docking homology models of the rna and proteins into an 8.7 a cryo-em map 0.9549 51 152
1qd7-assembly1.cif.gz_C partial model for 30s ribosomal subunit 0.9432 49 206
1c05-assembly1.cif.gz_A solution structure of ribosomal protein s4 delta 41, refined with dipolar couplings (minimized average structure) 0.9163 49 206
1fka-assembly1.cif.gz_D structure of functionally activated small ribosomal subunit at 3.3 a resolution 0.9153 46 206
ID Description Score Start End Superfamily
af_Q9LXG1_108_164_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9933 95 138 3.10.290.10
af_A0A0P0Y445_123_179_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9851 96 139 3.10.290.10
af_C6TBL4_107_182_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9696 96 138 3.10.290.10
af_A0A144A2N8_107_181_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9575 96 138 3.10.290.10
af_Q9XPI8_145_195_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9536 95 143 3.10.290.10
ID Description Score Start End GO Terms
AF-M1XMV3-F1-model_v4 Small ribosomal subunit protein uS4c 0.9538 52 207 GO:0003735
GO:0006412
GO:0009507
GO:0015935
GO:0019843
GO:0042274
AF-D5FUW1-F1-model_v4 Small ribosomal subunit protein uS4c 0.9524 49 207 GO:0003735
GO:0006412
GO:0009507
GO:0015935
GO:0019843
GO:0042274
AF-A0A0H4TJV6-F1-model_v4 Small ribosomal subunit protein uS4 0.9488 49 206 GO:0003735
GO:0006412
GO:0015935
GO:0019843
GO:0042274
AF-A0A6I2VZC4-F1-model_v4 deleted 0.9446 45 206
AF-V9ZWC7-F1-model_v4 deleted 0.9431 54 206

Map