F377335

General Info

Members Datasets Scaffolds Average Seq Length
270 210 217 753

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2984576629|2984580307
Length 827
Sequence AGSGDVVSVPAPRLAKVSDERAGSTGAEVRPRDDDAAVPSDAPDADGDDAGRAAWLRTRRPTPGRDVATAPTRSTEAVTSARSMRARLARIGTRSQPGNPVLDPLFRAVRANHPKADLALLERAYLTAERMHGTQMRKSGDPYITHPLAVTTILAEIGMTEPTLVAALLHDTVEDTPYTLDELRADFGDEVALLVDGVTKLDKVQYGDSAQAETIRKMIVAMSRDIRVLVIKLADRLHNMRTLRYVKQETQERKARETLDIFAPLAHRLGMNTLKWELEDLAFATLHPKIYDEIVRLVADRAPSRDQFLAEVIAQVTADLKDAKIKATVTGRPKHYYSIYQKMIVGGREFTDIYDLVGIRVLVEEDRDCYTVMGTVHQRWNPVLGRFKDFIAMPKFNMYQSLHTTVIGPQGKPVEIQIRTFAMHKRAEYGVAAHWKYKEDNRAGVDTDRLGDPDDMNWVRQLLDWQSDVEDPSEFLDSLRYEINRAEVYVFTPRGDVIALPTGATPVDFAYAVHTEVGHHTIGARVNGRLVPLESTLDNGDVVEVFTSKAQTAAPSQDWLTFVKSPRARSKIRAWFTKERREEAIERGKDQLAKLMRKEGLPLKRLMSAETLRLAAVHFKLDDITALYAAVGEGNLSAQAVVRRVIDLHGGEEGAREHAAEGVTITSPRRARKVTPSSTESGVIVRGVADVWVKLAKCCTPVPPDPILGFVTKGGGVSVHRQDCTNAGNLQGQPERLVEVEWAPTAQSTFLVNIQVEALDRARLLSDITMVLSDAHVNILSATLSTTRDRVAKSRFTFEMADAKHLDTVLRAVRTVPGVFDAYRVTQ

Samples

Sample ID Description Type Environment
1 2537561592 Arthrobacter crystallopoietes BAB-32 Isolate Rhizosphere
2 2643221561 Nocardioides sp. Root151 Isolate Unclassified
3 2643221576 Nocardioides sp. Root614 Isolate Unclassified
4 2643221590 Nocardioides sp. Root682 Isolate Unclassified
5 2643221604 Nocardioides sp. Root190 Isolate Unclassified
6 2643221613 Oerskovia sp. Root22 Isolate Unclassified
7 2643221615 Nocardioides sp. Root224 Isolate Unclassified
8 2643221617 Nocardioides sp. Root79 Isolate Unclassified
9 2643221620 Nocardioides sp. Root240 Isolate Unclassified
10 2643221641 Nocardioides sp. Root122 Isolate Unclassified
11 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
12 2643221681 Aeromicrobium sp. Root472D3 Isolate Unclassified
13 2643221696 Nocardioides sp. Root140 Isolate Unclassified
14 2643221711 Terrabacter sp. Root85 Isolate Unclassified
15 2643221721 Oerskovia sp. Root918 Isolate Unclassified
16 2728369276 Kineococcus rhizosphaerae DSM 19711 Isolate Rhizosphere
17 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
18 2738541305 Nocardioides sp. CF167 Isolate Unclassified
19 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
20 2784132109 Dermacoccus sp. DS28 SAI-028 Isolate Unclassified
21 2808606700 Arthrobacter agilis UMCV2 Isolate Rhizosphere
22 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
23 2811994880 Cellulomonas sp. SLBN-39 Isolate Unclassified
24 2811994882 Terrabacter sp. SLBN-196 Isolate Unclassified
25 2818991318 Humibacillus xanthopallidus SLBN-155 Isolate Unclassified
26 2818991458 Terrabacter sp. 3211 Isolate Rhizosphere
27 2818991462 Terrabacter sp. 3264 Isolate Rhizosphere
28 2818991469 Terrabacter lapilli 3265 Isolate Rhizosphere
29 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
30 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
31 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
32 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
33 2919051321 Sinomonas atrocyanea 1003 Isolate Rhizosphere
34 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
35 2919446982 Phycicoccus sp. 3266 Isolate Rhizosphere
36 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
37 2928153084 Leifsonia sp. 563 Isolate Unclassified
38 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
39 2935890801 Oerskovia enterophila 3230 Isolate Rhizosphere
40 2946003308 Arthrobacter agilis W3I6 Isolate Rhizosphere
41 2946024296 Arthrobacter woluwensis W4I2 Isolate Rhizosphere
42 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
43 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
44 2984592036 Aeromicrobium sp. SORGH_AS981 Isolate Aerial Root
45 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
46 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
47 3001889506 Janibacter sp. YIM B02568 Isolate Unclassified
48 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
49 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
50 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
51 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
52 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
53 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
54 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
55 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
56 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
57 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
58 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
59 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
60 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
61 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
62 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
63 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
64 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
65 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
66 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
67 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
68 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
69 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
70 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
71 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
72 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
73 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
74 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
75 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
76 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
77 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
78 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
79 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
80 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
81 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
82 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
83 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
84 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
85 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
86 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
87 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
88 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
89 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
90 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
91 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
92 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
93 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
94 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
95 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
96 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
97 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
98 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
99 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
100 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
111 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
112 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
115 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
116 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
117 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
118 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
119 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
120 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
121 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
122 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
123 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
124 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
125 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
126 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
127 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
128 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
129 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
130 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
131 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
132 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
133 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
134 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
135 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
136 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
137 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
138 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
139 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
140 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
141 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
142 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
143 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
144 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
145 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
146 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
147 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
148 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
149 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
150 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
151 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
152 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
153 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
154 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
155 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
156 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
157 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
158 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
159 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
160 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
161 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
162 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
163 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
164 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
165 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
166 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
167 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
168 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
169 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
170 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
171 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
172 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
173 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
174 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
175 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
176 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
177 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
178 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
179 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
180 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
181 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
182 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
183 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
184 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
185 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
186 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
187 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
188 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
189 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
190 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
191 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
192 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
193 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
194 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
195 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
196 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
197 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
198 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
199 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
200 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
201 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
202 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
203 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
204 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
205 8004021418 Arthrobacter sp. SDTb3-6 Isolate Rhizosphere
206 8004025490 Arthrobacter wenxiniae AETb3-4 Isolate Rhizosphere
207 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
208 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule
209 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
210 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 80
Metatranscriptomes 0.37
Isolates 19.63

Biome Distribution

Category Percentage (%)
Aerial Root 1.11
Bulb 0
Endosphere 12.22
Nodule 0.37
Rhizoplane 8.52
Rhizosphere 64.44
Stem 0
Stem Tuber 0
Unclassified 13.33

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 LJQas_1000412 3300000549 Bacteria 7231
2 JGI24735J21928_10006390 3300002067 Bacteria 3881
3 Ga0006562J51391_1047600 3300003578 Bacteria 11341
4 Ga0055539_1000008 3300003752 Bacteria 537665
5 Ga0055533_1000001 3300003756 Bacteria 1863437
6 Ga0055525_1000510 3300003759 Bacteria 19192
7 Ga0055527_1000001 3300003760 Bacteria 850044
8 Ga0055529_1000018 3300003763 Bacteria 344344
9 Ga0070683_100003420 3300005329 Bacteria 12879
10 Ga0070682_100004692 3300005337 Bacteria 7593
11 Ga0070674_100021339 3300005356 Bacteria 4155
12 Ga0070701_10014861 3300005438 Bacteria 3578
13 Ga0070708_100011453 3300005445 Bacteria 7220
14 Ga0070707_100040044 3300005468 Bacteria 4481
15 Ga0070698_100001263 3300005471 Bacteria 28255
16 Ga0070698_100002553 3300005471 Bacteria 20034
17 Ga0070679_100024142 3300005530 Bacteria 5958
18 Ga0070684_100010611 3300005535 Bacteria 7305
19 Ga0070684_100064127 3300005535 Bacteria 3222
20 Ga0070672_100036205 3300005543 Bacteria 3758
21 Ga0070665_100000863 3300005548 Bacteria 39318
22 Ga0070664_100074509 3300005564 Bacteria 2913
23 Ga0068854_100035469 3300005578 Bacteria 3491
24 Ga0068856_100067855 3300005614 Bacteria 3525
25 Ga0070702_100011445 3300005615 Bacteria 4414
26 Ga0068852_100040160 3300005616 Bacteria 3946
27 Ga0068861_100050836 3300005719 Bacteria 3144
28 Ga0068858_100057642 3300005842 Bacteria 3590
29 Ga0068860_100000393 3300005843 Bacteria 57188
30 Ga0081455_10000909 3300005937 Bacteria 37956
31 Ga0081455_10002872 3300005937 Bacteria 20284
32 Ga0081538_10000625 3300005981 Bacteria 39268
33 Ga0081539_10002629 3300005985 Bacteria 24557
34 Ga0075365_10004436 3300006038 Bacteria 7434
35 Ga0075368_10005037 3300006042 Bacteria 4520
36 Ga0075363_100003701 3300006048 Bacteria 6576
37 Ga0075364_10000263 3300006051 Bacteria 25539
38 Ga0075428_100006162 3300006844 Bacteria 13345
39 Ga0075431_100005456 3300006847 Bacteria 12564
40 Ga0075429_100000128 3300006880 Bacteria 45143
41 Ga0105239_10007799 3300010375 Bacteria 12246
42 Ga0105246_10002293 3300011119 Bacteria 11539
43 Ga0157372_10001640 3300013307 Bacteria 24319
44 Ga0157375_10003295 3300013308 Bacteria 13980
45 Ga0157379_10002928 3300014968 Bacteria 14411
46 Ga0157379_10017786 3300014968 Bacteria 6261
47 Ga0157376_10055450 3300014969 Bacteria 3307
48 Ga0213873_10000219 3300021358 Bacteria 10125
49 Ga0209566_100050 3300025225 Bacteria 234653
50 Ga0209674_100001 3300025226 Bacteria 4013750
51 Ga0209672_100006 3300025228 Bacteria 1004497
52 Ga0209147_100486 3300025229 Bacteria 23814
53 Ga0209563_100001 3300025230 Bacteria 4013775
54 Ga0209677_100001 3300025253 Bacteria 4013787
55 Ga0209677_100187 3300025253 Bacteria 50389
56 Ga0209148_1000015 3300025254 Bacteria 850103
57 Ga0209455_1000013 3300025272 Bacteria 850103
58 Ga0209455_1001835 3300025272 Bacteria 8907
59 Ga0207647_10023735 3300025904 Bacteria 4052
60 Ga0207647_10025587 3300025904 Bacteria 3874
61 Ga0207643_10001085 3300025908 Bacteria 16092
62 Ga0207652_10023978 3300025921 Bacteria 5061
63 Ga0207646_10071447 3300025922 Bacteria 3099
64 Ga0207664_10017948 3300025929 Bacteria 5200
65 Ga0207686_10016692 3300025934 Bacteria 4123
66 Ga0207639_10030448 3300026041 Bacteria 3958
67 Ga0207708_10000537 3300026075 Bacteria 29305
68 Ga0207708_10047049 3300026075 Bacteria 3286
69 Ga0207648_10006002 3300026089 Bacteria 12132
70 Ga0207675_100021484 3300026118 Bacteria 6011
71 Ga0207675_100089396 3300026118 Bacteria 2894
72 Ga0209813_10002513 3300027866 Bacteria 4201
73 Ga0207428_10029110 3300027907 Bacteria 4581
74 Ga0268266_10033961 3300028379 Bacteria 4335
75 Ga0268264_10000468 3300028381 Bacteria 54851
76 Ga0265320_10005815 3300031240 Bacteria 7857
77 Ga0307408_100037614 3300031548 Bacteria 3410
78 Ga0307405_10020405 3300031731 Bacteria 3702
79 Ga0307405_10046403 3300031731 Bacteria 2669
80 Ga0307410_10004145 3300031852 Bacteria 7433
81 Ga0307410_10032223 3300031852 Bacteria 3370
82 Ga0307406_10061619 3300031901 Bacteria 2423
83 Ga0307416_100002419 3300032002 Bacteria 10711
84 Ga0307416_100020285 3300032002 Bacteria 4739
85 Ga0307411_10042175 3300032005 Bacteria 2909
86 Ga0307415_100019311 3300032126 Bacteria 4136
87 Ga0307415_100043441 3300032126 Bacteria 2999
88 Ga0395900_0026695 3300037418 Bacteria 5912
89 Ga0395900_0075150 3300037418 Bacteria 3473
90 Ga0395898_0015892 3300037466 Bacteria 7713
91 Ga0395898_0090678 3300037466 Bacteria 2941
92 Ga0395905_0005801 3300037471 Bacteria 12544
93 Ga0395901_0023355 3300038443 Bacteria 6337
94 Ga0395901_0044708 3300038443 Bacteria 4593
95 Ga0395901_0047411 3300038443 Bacteria 4461
96 Ga0400485_10266 3300038735 Bacteria 19559
97 Ga0400486_11169 3300038742 Bacteria 23690
98 Ga0436365_1929713 3300039437 Bacteria 3381
99 Ga0436362_0312532 3300039453 Bacteria 15116
100 Ga0451833_0377646 3300041491 Bacteria 11656
101 Ga0466966_0012780 3300044684 Bacteria 5562
102 Ga0466961_0009030 3300044693 Bacteria 6358
103 Ga0466963_0065701 3300044694 Bacteria 2432
104 Ga0466964_0013662 3300044706 Bacteria 3081
105 Ga0466971_0004472 3300044719 Bacteria 6040
106 Ga0466971_0006494 3300044719 Bacteria 5082
107 Ga0466970_0001325 3300044765 Bacteria 11977
108 Ga0466957_0004120 3300044842 Bacteria 8053
109 Ga0466960_0002774 3300044901 Bacteria 6638
110 Ga0466960_0009809 3300044901 Bacteria 3958
111 Ga0466959_0042207 3300045049 Bacteria 3364
112 Ga0466958_0025019 3300045836 Bacteria 3516
113 Ga0466967_0030893 3300045976 Bacteria 4501
114 Ga0466967_0044601 3300045976 Bacteria 3847
115 Ga0496102_0014458 3300048905 Bacteria 6858
116 Ga0496102_0057212 3300048905 Bacteria 3559
117 Ga0496102_0104292 3300048905 Bacteria 2637
118 Ga0496103_0018490 3300048906 Bacteria 4180
119 Ga0496104_0001924 3300048907 Bacteria 17991
120 Ga0496104_0004085 3300048907 Bacteria 12667
121 Ga0496105_0004252 3300048908 Bacteria 10770
122 Ga0496105_0015057 3300048908 Bacteria 6155
123 Ga0496106_0012030 3300048909 Bacteria 6386
124 Ga0496107_0048725 3300048910 Bacteria 3053
125 Ga0496108_0002914 3300048911 Bacteria 13752
126 Ga0496108_0028450 3300048911 Bacteria 4625
127 Ga0496108_0061118 3300048911 Bacteria 3170
128 Ga0496109_0000317 3300048912 Bacteria 45298
129 Ga0496110_0059658 3300048913 Bacteria 3363
130 Ga0496111_0004923 3300048914 Bacteria 8480
131 Ga0496111_0004931 3300048914 Bacteria 8475
132 Ga0496112_0050440 3300048915 Bacteria 4081
133 Ga0496114_0006742 3300048917 Bacteria 9046
134 Ga0496114_0016378 3300048917 Bacteria 5972
135 Ga0496114_0021013 3300048917 Bacteria 5303
136 Ga0496114_0031932 3300048917 Bacteria 4332
137 Ga0496115_0002147 3300048918 Bacteria 14097
138 Ga0496117_0009561 3300048920 Bacteria 8990
139 Ga0496118_0010535 3300048921 Bacteria 9144
140 Ga0496119_0019967 3300048922 Bacteria 4907
141 Ga0496124_0027192 3300048927 Bacteria 5141
142 Ga0501031_0001642 3300049568 Bacteria 14030
143 Ga0501032_0014543 3300049569 Bacteria 5573
144 Ga0501032_0032492 3300049569 Bacteria 3577
145 Ga0501033_0003639 3300049570 Bacteria 12567
146 Ga0501033_0021364 3300049570 Bacteria 4883
147 Ga0501036_0000932 3300049572 Bacteria 21959
148 Ga0501036_0016249 3300049572 Bacteria 6216
149 Ga0501036_0022190 3300049572 Bacteria 5339
150 Ga0501037_0002518 3300049573 Bacteria 13235
151 Ga0501038_0012988 3300049574 Bacteria 7597
152 Ga0501038_0017862 3300049574 Bacteria 6408
153 Ga0501040_0006367 3300049576 Bacteria 7666
154 Ga0501040_0008764 3300049576 Bacteria 6571
155 Ga0501040_0070353 3300049576 Bacteria 2414
156 Ga0501041_0012954 3300049577 Bacteria 4939
157 Ga0501042_0002629 3300049578 Bacteria 11040
158 Ga0501042_0071788 3300049578 Bacteria 2477
159 Ga0501046_0039958 3300049580 Bacteria 3753
160 Ga0501047_0000089 3300049581 Bacteria 117033
161 Ga0501047_0002115 3300049581 Bacteria 19007
162 Ga0501047_0017362 3300049581 Bacteria 6891
163 Ga0501048_0007352 3300049582 Bacteria 8348
164 Ga0501048_0008995 3300049582 Bacteria 7518
165 Ga0501048_0025601 3300049582 Bacteria 4300
166 Ga0501067_0003207 3300049583 Bacteria 9012
167 Ga0501067_0003684 3300049583 Bacteria 8445
168 Ga0501069_0010558 3300049585 Bacteria 4891
169 Ga0501070_0000593 3300049586 Bacteria 33023
170 Ga0501070_0005416 3300049586 Bacteria 10892
171 Ga0501070_0005883 3300049586 Bacteria 10461
172 Ga0501070_0037810 3300049586 Bacteria 4028
173 Ga0501070_0060441 3300049586 Bacteria 3141
174 Ga0501071_0024589 3300049587 Bacteria 4213
175 Ga0501072_0005676 3300049588 Bacteria 9503
176 Ga0501073_0005322 3300049589 Bacteria 9649
177 Ga0501073_0009274 3300049589 Bacteria 7260
178 Ga0501074_0002479 3300049590 Bacteria 12871
179 Ga0501074_0003018 3300049590 Bacteria 11855
180 Ga0501075_0004432 3300049591 Bacteria 9501
181 Ga0501075_0009620 3300049591 Bacteria 6767
182 Ga0501076_0000863 3300049592 Bacteria 19702
183 Ga0501076_0006688 3300049592 Bacteria 8366
184 Ga0501079_0005516 3300049741 Bacteria 9431
185 Ga0501079_0048532 3300049741 Bacteria 3276
186 Ga0501080_0101686 3300049742 Bacteria 2667
187 Ga0501081_0037010 3300049743 Bacteria 3329
188 Ga0501035_0001646 3300049822 Bacteria 22574
189 Ga0501035_0033421 3300049822 Bacteria 4677
190 Ga0501035_0060225 3300049822 Bacteria 3380
191 Ga0501044_0068872 3300049823 Bacteria 3603
192 Ga0501045_0009921 3300049824 Bacteria 6663
193 Ga0501045_0030193 3300049824 Bacteria 3921
194 nmdc:mga03n38_2614_c1 3300050490 Bacteria 5613
195 nmdc:mga00v17_1529_c2 3300050491 Bacteria 10795
196 nmdc:mga00v17_9733_c1 3300050491 Bacteria 5217
197 nmdc:mga0yw44_16829_c1 3300050492 Bacteria 3581
198 nmdc:mga04h51_3904_c1 3300050495 Bacteria 3666
199 nmdc:mga07m45_14418_c1 3300050496 Bacteria 4210
200 nmdc:mga05p37_997_c1 3300050507 Bacteria 32250
201 nmdc:mga09592_1183_c1 3300050508 Bacteria 20832
202 nmdc:mga06r32_2877_c1 3300050510 Bacteria 15449
203 nmdc:mga06r32_751_c1 3300050510 Bacteria 28489
204 nmdc:mga08y16_52690_c1 3300050511 Bacteria 4257
205 nmdc:mga08y16_6305_c1 3300050511 Bacteria 12437
206 Ga0500644_0000129 3300053088 Bacteria 46233
207 Ga0500641_0000783 3300053096 Bacteria 11492
208 Ga0500556_0000724 3300053104 Bacteria 19897
209 Ga0500593_000276 3300053117 Bacteria 20922
210 Ga0500559_0000194 3300053136 Bacteria 48792
211 Ga0500616_0001245 3300053153 Bacteria 25543
212 Ga0500616_0001955 3300053153 Bacteria 18371
213 Ga0501084_0018934 3300054114 Bacteria 5732
214 Ga0501082_0032618 3300060353 Bacteria 4493
215 Ga0501082_0039145 3300060353 Bacteria 4090
216 Ga0466962_0003158 3300061719 Bacteria 7825
217 Ga0530510_0036611 3300061734 Bacteria 3536

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044694 Ga0466963_0065701 Ga0466963_0065701_418_2421 652
2 3300037471 Ga0395905_0005801 Ga0395905_0005801_611_2767 673
3 3300038443 Ga0395901_0044708 Ga0395901_0044708_589_2745 673
4 3300049583 Ga0501067_0003207 Ga0501067_0003207_6718_8931 693
5 3300049585 Ga0501069_0010558 Ga0501069_0010558_37_2250 693
6 3300050496 nmdc:mga07m45_14418_c1 nmdc:mga07m45_14418_c1_15_2108 695
7 3300048909 Ga0496106_0012030 Ga0496106_0012030_2260_4608 696
8 3300049572 Ga0501036_0022190 Ga0501036_0022190_2829_5156 698
9 3300049576 Ga0501040_0070353 Ga0501040_0070353_60_2387 698
10 3300049591 Ga0501075_0009620 Ga0501075_0009620_785_3112 698
11 3300049741 Ga0501079_0048532 Ga0501079_0048532_891_3218 698
12 3300049742 Ga0501080_0101686 Ga0501080_0101686_20_2302 698
13 3300049743 Ga0501081_0037010 Ga0501081_0037010_16_2343 698
14 3300060353 Ga0501082_0032618 Ga0501082_0032618_1622_3949 698
15 3300061734 Ga0530510_0036611 Ga0530510_0036611_389_2716 698
16 3300031240 Ga0265320_10005815 Ga0265320_100058155 703
17 3300049569 Ga0501032_0014543 Ga0501032_0014543_387_2669 707
18 3300049576 Ga0501040_0006367 Ga0501040_0006367_122_2404 707
19 3300049582 Ga0501048_0025601 Ga0501048_0025601_1922_4204 707
20 3300049587 Ga0501071_0024589 Ga0501071_0024589_648_2930 707
21 3300049588 Ga0501072_0005676 Ga0501072_0005676_6911_9193 707
22 3300049592 Ga0501076_0006688 Ga0501076_0006688_5869_8151 707
23 3300049824 Ga0501045_0009921 Ga0501045_0009921_2236_4518 707
24 3300005937 Ga0081455_10000909 Ga0081455_1000090916 710
25 3300044765 Ga0466970_0001325 Ga0466970_0001325_3884_6145 710
26 3300006844 Ga0075428_100006162 Ga0075428_1000061625 711
27 3300006880 Ga0075429_100000128 Ga0075429_1000001284 711
28 3300027907 Ga0207428_10029110 Ga0207428_100291104 711
29 3300050507 nmdc:mga05p37_997_c1 nmdc:mga05p37_997_c1_12638_14983 711
30 3300050508 nmdc:mga09592_1183_c1 nmdc:mga09592_1183_c1_15557_17902 711
31 3300050510 nmdc:mga06r32_751_c1 nmdc:mga06r32_751_c1_8811_11156 711
32 3300050511 nmdc:mga08y16_52690_c1 nmdc:mga08y16_52690_c1_1699_4044 711
33 3300044706 Ga0466964_0013662 Ga0466964_0013662_454_2835 712
34 3300049586 Ga0501070_0005416 Ga0501070_0005416_718_3060 712
35 3300049589 Ga0501073_0009274 Ga0501073_0009274_4259_6601 712
36 3300049590 Ga0501074_0003018 Ga0501074_0003018_5357_7699 712
37 3300049741 Ga0501079_0005516 Ga0501079_0005516_6364_8706 712
38 3300005937 Ga0081455_10002872 Ga0081455_100028722 713
39 3300005445 Ga0070708_100011453 Ga0070708_1000114535 714
40 3300005471 Ga0070698_100002553 Ga0070698_10000255312 714
41 3300037418 Ga0395900_0075150 Ga0395900_0075150_39_2225 714
42 3300044719 Ga0466971_0004472 Ga0466971_0004472_665_3004 715
43 3300045976 Ga0466967_0030893 Ga0466967_0030893_2184_4415 715
44 3300006042 Ga0075368_10005037 Ga0075368_100050373 716
45 3300006048 Ga0075363_100003701 Ga0075363_1000037014 716
46 3300027866 Ga0209813_10002513 Ga0209813_100025133 716
47 3300050495 nmdc:mga04h51_3904_c1 nmdc:mga04h51_3904_c1_250_2646 716
48 3300048917 Ga0496114_0006742 Ga0496114_0006742_4420_6987 717
49 3300053088 Ga0500644_0000129 Ga0500644_0000129_24377_26611 718
50 3300005981 Ga0081538_10000625 Ga0081538_1000062523 719
51 3300006847 Ga0075431_100005456 Ga0075431_10000545612 719
52 3300014969 Ga0157376_10055450 Ga0157376_100554502 719
53 3300048905 Ga0496102_0104292 Ga0496102_0104292_81_2546 719
54 3300048907 Ga0496104_0004085 Ga0496104_0004085_2295_4760 719
55 3300048908 Ga0496105_0004252 Ga0496105_0004252_329_2794 719
56 3300048911 Ga0496108_0002914 Ga0496108_0002914_153_2618 719
57 3300048911 Ga0496108_0028450 Ga0496108_0028450_1747_4227 719
58 3300048912 Ga0496109_0000317 Ga0496109_0000317_35364_37829 719
59 3300048914 Ga0496111_0004931 Ga0496111_0004931_5525_7990 719
60 3300048917 Ga0496114_0031932 Ga0496114_0031932_534_3014 719
61 3300050510 nmdc:mga06r32_2877_c1 nmdc:mga06r32_2877_c1_6237_8579 719
62 3300053153 Ga0500616_0001955 Ga0500616_0001955_6092_8623 721
63 3300005535 Ga0070684_100010611 Ga0070684_1000106114 722
64 3300005614 Ga0068856_100067855 Ga0068856_1000678552 722
65 3300005842 Ga0068858_100057642 Ga0068858_1000576422 722
66 3300010375 Ga0105239_10007799 Ga0105239_100077997 722
67 3300011119 Ga0105246_10002293 Ga0105246_100022937 722
68 3300013307 Ga0157372_10001640 Ga0157372_1000164018 722
69 3300013308 Ga0157375_10003295 Ga0157375_100032959 722
70 3300014968 Ga0157379_10017786 Ga0157379_100177864 722
71 3300025934 Ga0207686_10016692 Ga0207686_100166922 722
72 3300038735 Ga0400485_10266 Ga0400485_10266_12094_14343 722
73 3300038742 Ga0400486_11169 Ga0400486_11169_4041_6290 722
74 3300048906 Ga0496103_0018490 Ga0496103_0018490_349_2709 722
75 3300048913 Ga0496110_0059658 Ga0496110_0059658_497_2857 722
76 3300048914 Ga0496111_0004923 Ga0496111_0004923_450_2810 722
77 3300049583 Ga0501067_0003684 Ga0501067_0003684_6026_8371 722
78 3300049586 Ga0501070_0037810 Ga0501070_0037810_997_3342 722
79 3300049589 Ga0501073_0005322 Ga0501073_0005322_6572_8917 722
80 3300049590 Ga0501074_0002479 Ga0501074_0002479_9460_11805 722
81 3300054114 Ga0501084_0018934 Ga0501084_0018934_2884_5229 722
82 3300060353 Ga0501082_0039145 Ga0501082_0039145_1528_3873 722
83 3300005337 Ga0070682_100004692 Ga0070682_1000046924 724
84 3300005356 Ga0070674_100021339 Ga0070674_1000213393 724
85 3300005438 Ga0070701_10014861 Ga0070701_100148613 724
86 3300005543 Ga0070672_100036205 Ga0070672_1000362053 724
87 3300005564 Ga0070664_100074509 Ga0070664_1000745092 724
88 3300005578 Ga0068854_100035469 Ga0068854_1000354693 724
89 3300005615 Ga0070702_100011445 Ga0070702_1000114452 724
90 3300005719 Ga0068861_100050836 Ga0068861_1000508361 724
91 3300025908 Ga0207643_10001085 Ga0207643_1000108510 724
92 3300026041 Ga0207639_10030448 Ga0207639_100304481 724
93 3300026075 Ga0207708_10000537 Ga0207708_100005376 724
94 3300026089 Ga0207648_10006002 Ga0207648_100060027 724
95 3300026118 Ga0207675_100021484 Ga0207675_1000214841 724
96 3300050511 nmdc:mga08y16_6305_c1 nmdc:mga08y16_6305_c1_9608_11893 724
97 3300025904 Ga0207647_10023735 Ga0207647_100237352 726
98 3300037466 Ga0395898_0090678 Ga0395898_0090678_488_2884 727
99 3300038443 Ga0395901_0023355 Ga0395901_0023355_152_2548 727
100 iso_pu_bacteria 2537561592 2537898013 727
101 3300005535 Ga0070684_100064127 Ga0070684_1000641272 728
102 3300044719 Ga0466971_0006494 Ga0466971_0006494_2408_4735 728
103 3300044842 Ga0466957_0004120 Ga0466957_0004120_5711_8038 728
104 3300045976 Ga0466967_0044601 Ga0466967_0044601_1337_3664 728
105 3300005548 Ga0070665_100000863 Ga0070665_1000008638 729
106 3300026118 Ga0207675_100089396 Ga0207675_1000893961 729
107 3300028379 Ga0268266_10033961 Ga0268266_100339613 729
108 3300048920 Ga0496117_0009561 Ga0496117_0009561_451_2655 730
109 3300005616 Ga0068852_100040160 Ga0068852_1000401602 731
110 3300005985 Ga0081539_10002629 Ga0081539_1000262910 731
111 3300031548 Ga0307408_100037614 Ga0307408_1000376142 731
112 3300031852 Ga0307410_10004145 Ga0307410_100041456 731
113 3300032002 Ga0307416_100002419 Ga0307416_1000024193 731
114 iso_pu_bacteria 8004021418 8004024739 731
115 iso_pu_bacteria 8004025490 8004029075 731
116 3300032126 Ga0307415_100043441 Ga0307415_1000434412 732
117 3300048911 Ga0496108_0061118 Ga0496108_0061118_192_2630 732
118 iso_pu_bacteria 8004212874 8004214226 732
119 3300003752 Ga0055539_1000008 Ga0055539_1000008120 733
120 3300003756 Ga0055533_1000001 Ga0055533_1000001951 733
121 3300003759 Ga0055525_1000510 Ga0055525_10005105 733
122 3300021358 Ga0213873_10000219 Ga0213873_100002196 733
123 3300025225 Ga0209566_100050 Ga0209566_10005037 733
124 3300025226 Ga0209674_100001 Ga0209674_100001951 733
125 3300025230 Ga0209563_100001 Ga0209563_100001951 733
126 3300025253 Ga0209677_100001 Ga0209677_100001951 733
127 3300025253 Ga0209677_100187 Ga0209677_10018733 733
128 3300025272 Ga0209455_1001835 Ga0209455_10018354 733
129 3300037418 Ga0395900_0026695 Ga0395900_0026695_433_2730 733
130 3300039437 Ga0436365_1929713 Ga0436365_1929713_1031_3358 733
131 3300039453 Ga0436362_0312532 Ga0436362_0312532_7217_9544 733
132 3300044693 Ga0466961_0009030 Ga0466961_0009030_2652_4898 733
133 3300045049 Ga0466959_0042207 Ga0466959_0042207_147_2393 733
134 3300045836 Ga0466958_0025019 Ga0466958_0025019_974_3220 733
135 3300048921 Ga0496118_0010535 Ga0496118_0010535_3263_5509 733
136 3300061719 Ga0466962_0003158 Ga0466962_0003158_3928_6174 733
137 iso_pu_bacteria 2919523602 2919524673 733
138 iso_pu_bacteria 2946024296 2946025619 733
139 3300002067 JGI24735J21928_10006390 JGI24735J21928_100063904 734
140 3300003578 Ga0006562J51391_1047600 Ga0006562J51391_10476003 734
141 3300003760 Ga0055527_1000001 Ga0055527_1000001419 734
142 3300003763 Ga0055529_1000018 Ga0055529_100001877 734
143 3300005468 Ga0070707_100040044 Ga0070707_1000400442 734
144 3300006051 Ga0075364_10000263 Ga0075364_1000026322 734
145 3300014968 Ga0157379_10002928 Ga0157379_100029289 734
146 3300025228 Ga0209672_100006 Ga0209672_100006557 734
147 3300025229 Ga0209147_100486 Ga0209147_1004864 734
148 3300025254 Ga0209148_1000015 Ga0209148_1000015401 734
149 3300025272 Ga0209455_1000013 Ga0209455_1000013401 734
150 3300048908 Ga0496105_0015057 Ga0496105_0015057_247_2496 734
151 3300048917 Ga0496114_0016378 Ga0496114_0016378_561_2810 734
152 3300048922 Ga0496119_0019967 Ga0496119_0019967_2146_4395 734
153 3300049586 Ga0501070_0000593 Ga0501070_0000593_19686_21935 734
154 3300049822 Ga0501035_0060225 Ga0501035_0060225_411_2660 734
155 3300050491 nmdc:mga00v17_1529_c2 nmdc:mga00v17_1529_c2_3795_6098 734
156 3300053096 Ga0500641_0000783 Ga0500641_0000783_6868_9171 734
157 3300053153 Ga0500616_0001245 Ga0500616_0001245_22433_24673 734
158 iso_pu_bacteria 2643221681 2644456887 734
159 iso_pu_bacteria 2811994880 2812365248 734
160 iso_pu_bacteria 2844841374 2844842616 734
161 iso_pu_bacteria 2919055335 2919058300 734
162 iso_pu_bacteria 2928153084 2928156398 734
163 iso_pu_bacteria 2966921586 2966923268 734
164 iso_pu_bacteria 2995726249 2995727896 734
165 iso_pu_bacteria 8055034563 8055036118 734
166 iso_pu_bacteria 8055037949 8055038369 734
167 3300025922 Ga0207646_10071447 Ga0207646_100714472 735
168 3300044901 Ga0466960_0002774 Ga0466960_0002774_4181_6430 735
169 3300044901 Ga0466960_0009809 Ga0466960_0009809_390_2600 735
170 3300048927 Ga0496124_0027192 Ga0496124_0027192_326_2632 735
171 3300049573 Ga0501037_0002518 Ga0501037_0002518_7239_9527 735
172 3300049581 Ga0501047_0002115 Ga0501047_0002115_9463_11751 735
173 3300049822 Ga0501035_0001646 Ga0501035_0001646_7509_9797 735
174 3300050490 nmdc:mga03n38_2614_c1 nmdc:mga03n38_2614_c1_930_3275 735
175 3300050491 nmdc:mga00v17_9733_c1 nmdc:mga00v17_9733_c1_828_3173 735
176 iso_pu_bacteria 2643221613 2644083291 735
177 iso_pu_bacteria 2643221721 2644666425 735
178 iso_pu_bacteria 2808606700 2810363867 735
179 iso_pu_bacteria 2905926851 2905930997 735
180 iso_pu_bacteria 2935890801 2935890983 735
181 iso_pu_bacteria 2946003308 2946004326 735
182 iso_pu_bacteria 3001889506 3001891397 735
183 3300049581 Ga0501047_0000089 Ga0501047_0000089_36579_38939 736
184 iso_pu_bacteria 2728369276 2729904870 736
185 iso_pu_bacteria 2984592036 2984594612 736
186 3300037466 Ga0395898_0015892 Ga0395898_0015892_4614_6914 737
187 3300038443 Ga0395901_0047411 Ga0395901_0047411_786_3086 737
188 3300048905 Ga0496102_0057212 Ga0496102_0057212_541_2826 737
189 3300048910 Ga0496107_0048725 Ga0496107_0048725_608_2893 737
190 3300048915 Ga0496112_0050440 Ga0496112_0050440_1628_3928 737
191 3300048917 Ga0496114_0021013 Ga0496114_0021013_1449_3734 737
192 iso_pu_bacteria 2643221711 2644609636 737
193 iso_pu_bacteria 2738541272 2738696098 737
194 iso_pu_bacteria 2738543027 2739324914 737
195 iso_pu_bacteria 2811994882 2812374870 737
196 iso_pu_bacteria 2818991318 2819427607 737
197 iso_pu_bacteria 2818991458 2819666465 737
198 iso_pu_bacteria 2818991462 2819691631 737
199 iso_pu_bacteria 2818991469 2819729589 737
200 iso_pu_bacteria 2919051321 2919054404 737
201 iso_pu_bacteria 2919446982 2919450286 737
202 iso_pu_bacteria 2932431166 2932431969 737
203 3300032002 Ga0307416_100020285 Ga0307416_1000202852 738
204 3300032005 Ga0307411_10042175 Ga0307411_100421752 738
205 3300041491 Ga0451833_0377646 Ga0451833_0377646_1898_4228 738
206 3300044684 Ga0466966_0012780 Ga0466966_0012780_189_2612 738
207 3300049570 Ga0501033_0021364 Ga0501033_0021364_1973_4285 738
208 3300049576 Ga0501040_0008764 Ga0501040_0008764_832_3144 738
209 3300049577 Ga0501041_0012954 Ga0501041_0012954_676_2988 738
210 3300049580 Ga0501046_0039958 Ga0501046_0039958_514_2826 738
211 3300049582 Ga0501048_0007352 Ga0501048_0007352_5581_7893 738
212 3300049591 Ga0501075_0004432 Ga0501075_0004432_2571_4883 738
213 3300049592 Ga0501076_0000863 Ga0501076_0000863_8257_10569 738
214 3300049824 Ga0501045_0030193 Ga0501045_0030193_757_3069 738
215 3300053136 Ga0500559_0000194 Ga0500559_0000194_29591_31849 738
216 iso_pu_bacteria 2643221576 2643891634 738
217 iso_pu_bacteria 2643221590 2643960682 738
218 iso_pu_bacteria 2643221604 2644035802 738
219 iso_pu_bacteria 2643221615 2644093896 738
220 iso_pu_bacteria 2643221657 2644323740 738
221 iso_pu_bacteria 2784132109 2784472087 738
222 iso_pu_bacteria 8054609563 8054612816 740
223 3300005329 Ga0070683_100003420 Ga0070683_1000034202 741
224 3300005530 Ga0070679_100024142 Ga0070679_1000241424 741
225 3300025904 Ga0207647_10025587 Ga0207647_100255873 741
226 3300025921 Ga0207652_10023978 Ga0207652_100239781 741
227 3300031731 Ga0307405_10020405 Ga0307405_100204051 741
228 3300031852 Ga0307410_10032223 Ga0307410_100322231 741
229 3300048905 Ga0496102_0014458 Ga0496102_0014458_2326_4557 741
230 3300048907 Ga0496104_0001924 Ga0496104_0001924_8294_10525 741
231 3300048918 Ga0496115_0002147 Ga0496115_0002147_11202_13433 741
232 3300049568 Ga0501031_0001642 Ga0501031_0001642_3756_5987 741
233 3300049569 Ga0501032_0032492 Ga0501032_0032492_1162_3492 741
234 3300049570 Ga0501033_0003639 Ga0501033_0003639_2444_4774 741
235 3300049572 Ga0501036_0000932 Ga0501036_0000932_5184_7415 741
236 3300049572 Ga0501036_0016249 Ga0501036_0016249_2147_4477 741
237 3300049574 Ga0501038_0012988 Ga0501038_0012988_1855_4086 741
238 3300049574 Ga0501038_0017862 Ga0501038_0017862_544_2874 741
239 3300049578 Ga0501042_0002629 Ga0501042_0002629_2838_5069 741
240 3300049578 Ga0501042_0071788 Ga0501042_0071788_72_2363 741
241 3300049581 Ga0501047_0017362 Ga0501047_0017362_224_2455 741
242 3300049582 Ga0501048_0008995 Ga0501048_0008995_1798_4029 741
243 3300049586 Ga0501070_0005883 Ga0501070_0005883_676_2907 741
244 3300049822 Ga0501035_0033421 Ga0501035_0033421_1090_3321 741
245 3300049823 Ga0501044_0068872 Ga0501044_0068872_16_2247 741
246 iso_pu_bacteria 2643221641 2644229285 741
247 iso_pu_bacteria 2984576629 2984580307 741
248 iso_pu_bacteria 2990256926 2990259157 741
249 3300005471 Ga0070698_100001263 Ga0070698_1000012632 742
250 3300005843 Ga0068860_100000393 Ga0068860_10000039352 742
251 3300006038 Ga0075365_10004436 Ga0075365_100044365 742
252 3300025929 Ga0207664_10017948 Ga0207664_100179483 742
253 3300026075 Ga0207708_10047049 Ga0207708_100470492 742
254 3300028381 Ga0268264_10000468 Ga0268264_1000046810 742
255 3300049586 Ga0501070_0060441 Ga0501070_0060441_180_2564 742
256 3300050492 nmdc:mga0yw44_16829_c1 nmdc:mga0yw44_16829_c1_402_2717 742
257 3300053104 Ga0500556_0000724 Ga0500556_0000724_3836_6145 742
258 3300053117 Ga0500593_000276 Ga0500593_000276_10346_12577 742
259 iso_pu_bacteria 2643221561 2643825856 742
260 iso_pu_bacteria 2643221617 2644102302 742
261 iso_pu_bacteria 2643221620 2644115526 742
262 iso_pu_bacteria 2643221696 2644531848 742
263 iso_pu_bacteria 2738541305 2738872128 742
264 iso_pu_bacteria 2811994874 2812333183 742
265 iso_pu_bacteria 2855386786 2855386907 742
266 iso_pu_bacteria 2857481737 2857484666 742
267 3300000549 LJQas_1000412 LJQas_10004125 745
268 3300031731 Ga0307405_10046403 Ga0307405_100464031 745
269 3300031901 Ga0307406_10061619 Ga0307406_100616191 745
270 3300032126 Ga0307415_100019311 Ga0307415_1000193113 745

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02824

TGS

TGS domain

488

547

0.99

PF04607

RelA_SpoT

Region found in RelA / SpoT proteins

331

442

0.99

PF13291

ACT_4

ACT domain

746

824

0.97

PF13328

HD_4

HD domain

124

272

0.97

PF01842

ACT

ACT domain

752

818

0.96

PF01966

HD

HD domain

143

240

0.84

PF19296

RelA_AH_RIS

RelA/SpoT, AH and RIS domains

561

737

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
7oiw-assembly1.cif.gz_A structure of s. aureus rel catalytic domains in complex with pppgpp 0.9286 16 352
7oiw-assembly2.cif.gz_B structure of s. aureus rel catalytic domains in complex with pppgpp 0.9232 15 352
7oiw-assembly2.cif.gz_B structure of s. aureus rel catalytic domains in complex with pppgpp 0.9205 15 352
7oiw-assembly1.cif.gz_A structure of s. aureus rel catalytic domains in complex with pppgpp 0.9177 16 352
2pa3-assembly1.cif.gz_A crystal structure of serine bound g336v mutant of e.coli phosphoglycerate dehydrogenase 0.9146 670 742
ID Description Score Start End Superfamily
af_P9WHG9_657_737_3.30.70.260 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;ACT domain 0.9884 666 745 3.30.70.260
af_A0A1D6F177_170_222_3.30.70.260 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;ACT domain 0.9822 671 716 3.30.70.260
af_P27249_708_769_3.30.70.260 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;ACT domain 0.9755 671 716 3.30.70.260
af_P0AG20_664_743_3.30.70.260 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;ACT domain 0.9668 669 745 3.30.70.260
af_P9WHG9_657_737_3.30.70.260 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;ACT domain 0.9645 666 745 3.30.70.260
ID Description Score Start End GO Terms
AF-A0A2G9MKS4-F1-model_v4 (P)ppGpp synthetase 0.9716 18 120 GO:0005886
AF-A0A1Q3CVQ0-F1-model_v4 RelA_SpoT domain-containing protein 0.971 227 335 GO:0009507
GO:0015969
AF-A0A7Y2KHW1-F1-model_v4 Bifunctional (P)ppGpp synthetase/guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase 0.9674 19 96 GO:0016787
AF-A0A383ET57-F1-model_v4 HD domain-containing protein 0.9638 22 218 GO:0005886
GO:0008728
GO:0008893
GO:0015969
GO:0042594
AF-A0A2N1QM86-F1-model_v4 ACT domain-containing protein 0.9586 669 743

Feature Viewer

pLDDT pTM Quality
77.73 0.51 Medium
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Predicted Structure (AlphaFold2)

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