F374501

General Info

Members Datasets Scaffolds Average Seq Length
267 186 228 368

Family's Representative Sequence

Representative Sequence 3300005293|Ga0065715_10020278|Ga0065715_100202782
Length 419
Sequence MRRPGMTLTIRTMTSGGFLESGMGDIHTYNTSLQAPDMRPSPIAPRPDRARPLALLLLCTLFAGVLVLGACKKGEGDAQAANGDPASKGPEAVPVEVAVATRRPIAASYSGTAPLEARGESQVIAKTSGVALMVMAEEGQQVRAGQVLLRLDSARAALQAAQTASQMRKLESNYARSRQLAEQKLISANDIDQIKYDLENARAANRLANLELSYANVTAPISGVIAQRSIKPGNFVQINTPIFRIVDTSRLEATLNVPERELETLKPGLPVLLQVDALPGKTFSGSVDRVAPVVDSGSGTFRVICAFNGGGVLQPGMFGRVRIDYDNRANALVVPRLALLDDEGDPAVFAIRAGKAVRVPVKLGYLDGEWAEVRSGVALGDQVVIAGKTALRDGSVVQVLGAPNAKAPVASAKSPTKKQ

Samples

Sample ID Description Type Environment
1 2524614729 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
2 2576861471 Stenotrophomonas rhizophila DSM 14405 Isolate Rhizosphere
3 2627854209 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
4 2643221559 Lysobacter sp. Root559 Isolate Unclassified
5 2643221573 Lysobacter sp. Root604 Isolate Unclassified
6 2643221579 Pseudoxanthomonas sp. Root630 Isolate Unclassified
7 2643221581 Pseudoxanthomonas sp. Root65 Isolate Unclassified
8 2643221586 Lysobacter sp. Root667 Isolate Unclassified
9 2643221593 Lysobacter sp. Root690 Isolate Unclassified
10 2643221612 Lysobacter sp. Root76 Isolate Unclassified
11 2643221720 Lysobacter sp. Root916 Isolate Unclassified
12 2643221727 Lysobacter sp. Root96 Isolate Unclassified
13 2643221728 Lysobacter sp. Root983 Isolate Unclassified
14 2818991457 Xanthomonas translucens 569 Isolate Unclassified
15 2842757796 Stenotrophomonas sp. R-72406 Isolate Unclassified
16 2852649853 Stenotrophomonas sp. JAI102 Isolate Rhizosphere
17 2852684882 Xanthomonas sp. JAI131 Isolate Rhizosphere
18 2857442823 Stenotrophomonas sp. R-74235 Isolate Unclassified
19 2894414249 Luteimonas sp. LNNU 24178 Isolate Rhizosphere
20 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
21 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
22 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
23 2895525241 Pseudoxanthomonas sp. SGT-18 Isolate Rhizosphere
24 2919130084 Xanthomonas sp. 1678 Isolate Rhizosphere
25 2923516293 Pseudoxanthomonas mexicana SLBN-89 Isolate Rhizosphere
26 2929195423 Xanthomonas sp. R-73098 Hybrid assembly Isolate Unclassified
27 2937610967 Stenotrophomonas maltophilia EP20 Isolate Unclassified
28 2939622612 Stenotrophomonas sp. 2619 Isolate Rhizosphere
29 2941475908 Stenotrophomonas rhizophila 2680 Isolate Rhizosphere
30 2941489479 Lysobacter enzymogenes 2943 Isolate Rhizosphere
31 2974307012 Stenotrophomonas sp. SORGH_AS_0282 Isolate Unclassified
32 2977247770 Stenotrophomonas rhizophila SORGH_AS 457 Isolate Unclassified
33 2984514374 Stenotrophomonas sp. SORGH_AS282 Isolate Aerial Root
34 2995948881 Lysobacter enzymogenes B25 Isolate Unclassified
35 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
36 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
37 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
38 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
39 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
40 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
41 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
42 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
43 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
44 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
45 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
46 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
47 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
48 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
49 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
50 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
51 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
52 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
53 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
54 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
55 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
56 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
57 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
58 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
59 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
60 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
61 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
62 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
63 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
64 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
65 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
66 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
67 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
68 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
69 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
70 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
71 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
72 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
73 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
74 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
75 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
76 3300012512 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510 Metagenome Rhizosphere
77 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
78 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
79 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
80 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
81 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
82 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
83 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
84 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
85 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
86 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
87 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
88 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
89 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
90 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
91 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
92 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
93 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
94 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
95 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
96 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
97 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
98 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
99 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
100 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
113 3300027360 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes) (version 2) Metagenome Rhizosphere
114 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
115 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
116 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
117 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
118 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
119 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
120 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
121 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
122 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
123 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
124 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
125 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
126 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
127 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
128 3300039145 Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JP6-T1 Metagenome Unclassified
129 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
130 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
131 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
132 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
133 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
134 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
135 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
136 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
137 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
138 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
139 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
140 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
141 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
142 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
143 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
144 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
145 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
146 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
147 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
148 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
149 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
150 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
151 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
152 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
153 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
154 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
155 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
156 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
157 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
158 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
159 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
160 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
161 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
162 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
163 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
164 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
165 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
166 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
167 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
168 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
169 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
170 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
171 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
172 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
173 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
174 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
175 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
176 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
177 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
178 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
179 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
180 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
181 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
182 8002869464 Pseudoxanthomonas helianthi 110414 Isolate Unclassified
183 8003014200 Lysobacter changpingensis Cm-3-T8 Isolate Rhizosphere
184 8021622325 Xanthomonas sp. LMG12462 Isolate Rhizosphere
185 8021626552 Xanthomonas sp. LMG12460 Isolate Rhizosphere
186 8021648035 Xanthomonas sp. LMG 12461 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 85.39
Metatranscriptomes 0
Isolates 14.61

Biome Distribution

Category Percentage (%)
Aerial Root 0.37
Bulb 0
Endosphere 18.73
Nodule 0
Rhizoplane 4.12
Rhizosphere 53.56
Stem 0
Stem Tuber 0
Unclassified 23.22

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25152J39213_1000036 3300002773 Bacteria 93679
2 JGI25150J39212_1000344 3300002774 Bacteria 22850
3 JGI25151J46595_10000551 3300003187 Bacteria 34153
4 JGI25151J46595_10000561 3300003187 Bacteria 33691
5 JGI25153J46596_10000058 3300003215 Bacteria 132614
6 rootH1_10047596 3300003323 Bacteria 2556
7 Ga0055526_1008668 3300003771 Bacteria 5024
8 Ga0055537_1000914 3300003773 Bacteria 13894
9 Ga0055524_1025192 3300003775 Bacteria 1868
10 Ga0055534_1000364 3300003784 Bacteria 28397
11 Ga0055528_1000453 3300003790 Bacteria 32772
12 Ga0055530_10006205 3300003791 Bacteria 5404
13 Ga0058692_1000002 3300003856 Bacteria 508401
14 Ga0058692_1000023 3300003856 Bacteria 237263
15 Ga0065165_1018475 3300005262 Bacteria 2522
16 Ga0065714_10009669 3300005288 Bacteria 2893
17 Ga0065704_10072741 3300005289 Bacteria 8074
18 Ga0065715_10020278 3300005293 Bacteria 1968
19 Ga0070670_100259529 3300005331 Bacteria 1514
20 Ga0070680_100050855 3300005336 Bacteria 3381
21 Ga0070660_100041385 3300005339 Bacteria 3512
22 Ga0070668_100050864 3300005347 Bacteria 3191
23 Ga0070669_100290657 3300005353 Bacteria 1312
24 Ga0070675_100223125 3300005354 Bacteria 1642
25 Ga0070671_100004662 3300005355 Bacteria 10874
26 Ga0070671_100020476 3300005355 Bacteria 5395
27 Ga0070674_100032818 3300005356 Bacteria 3451
28 Ga0070659_100110045 3300005366 Bacteria 2224
29 Ga0070714_100194212 3300005435 Bacteria 1854
30 Ga0070679_100089479 3300005530 Bacteria 3065
31 Ga0068853_100213009 3300005539 Bacteria 1762
32 Ga0070693_100007344 3300005547 Bacteria 5384
33 Ga0070664_100057618 3300005564 Bacteria 3302
34 Ga0075363_100121805 3300006048 Bacteria 1457
35 Ga0075364_10000189 3300006051 Bacteria 28350
36 Ga0075364_10015439 3300006051 Bacteria 4737
37 Ga0097621_100030866 3300006237 Bacteria 4246
38 Ga0068871_100028502 3300006358 Bacteria 4377
39 Ga0105251_10002140 3300009011 Bacteria 15876
40 Ga0105244_10016523 3300009036 Bacteria 4202
41 Ga0105245_10108532 3300009098 Bacteria 2578
42 Ga0105243_10050359 3300009148 Bacteria 3290
43 Ga0105242_10071381 3300009176 Bacteria 2881
44 Ga0105032_100666 3300009979 Bacteria 3358
45 Ga0105028_106953 3300009993 Bacteria 1182
46 Ga0157327_1000200 3300012512 Bacteria 2992
47 Ga0157373_10160509 3300013100 Bacteria 1582
48 Ga0157373_10199246 3300013100 Bacteria 1411
49 Ga0157371_10000337 3300013102 Bacteria 60433
50 Ga0157371_10151298 3300013102 Bacteria 1655
51 Ga0157369_10095881 3300013105 Bacteria 3165
52 Ga0157374_10049256 3300013296 Bacteria 3913
53 Ga0157372_10128511 3300013307 Bacteria 2914
54 Ga0157372_10133972 3300013307 Bacteria 2852
55 Ga0182008_10000115 3300014497 Bacteria 61294
56 Ga0182008_10014349 3300014497 Bacteria 4150
57 Ga0182006_1032819 3300015261 Bacteria 2084
58 Ga0182007_10000103 3300015262 Bacteria 59975
59 Ga0182005_1000251 3300015265 Bacteria 34134
60 Ga0163161_10061625 3300017792 Bacteria 2731
61 Ga0207425_1000011 3300025245 Bacteria 550735
62 Ga0207425_1023692 3300025245 Bacteria 1282
63 Ga0209129_1000031 3300025258 Bacteria 383039
64 Ga0209565_1000014 3300025263 Bacteria 530302
65 Ga0209673_1000065 3300025273 Bacteria 252799
66 Ga0209673_1010517 3300025273 Bacteria 3895
67 Ga0209675_1000011 3300025291 Bacteria 520597
68 Ga0209675_1011964 3300025291 Bacteria 2830
69 Ga0209676_1000170 3300025292 Bacteria 154647
70 Ga0209676_1001686 3300025292 Bacteria 19134
71 Ga0209676_1002207 3300025292 Bacteria 14526
72 Ga0209676_1002230 3300025292 Bacteria 14345
73 Ga0209676_1015094 3300025292 Bacteria 2863
74 Ga0209025_1000012 3300025294 Bacteria 924362
75 Ga0209025_1000015 3300025294 Bacteria 808120
76 Ga0209025_1001366 3300025294 Bacteria 32743
77 Ga0209025_1003545 3300025294 Bacteria 14639
78 Ga0209564_1000775 3300025295 Bacteria 44355
79 Ga0209564_1006112 3300025295 Bacteria 6609
80 Ga0209758_1000143 3300025297 Bacteria 171093
81 Ga0209758_1045075 3300025297 Bacteria 1604
82 Ga0209050_1000689 3300025298 Bacteria 50775
83 Ga0209050_1003287 3300025298 Bacteria 12143
84 Ga0209050_1006429 3300025298 Bacteria 6960
85 Ga0209256_1005445 3300025299 Bacteria 7327
86 Ga0209256_1006850 3300025299 Bacteria 5858
87 Ga0209256_1007188 3300025299 Bacteria 5588
88 Ga0209051_1003546 3300025303 Bacteria 10159
89 Ga0209257_1000014 3300025304 Bacteria 946850
90 Ga0209257_1000170 3300025304 Bacteria 169384
91 Ga0209257_1000462 3300025304 Bacteria 74803
92 Ga0209257_1004180 3300025304 Bacteria 11455
93 Ga0209257_1009439 3300025304 Bacteria 5222
94 Ga0209257_1027817 3300025304 Bacteria 1873
95 Ga0207713_1007609 3300025735 Bacteria 6346
96 Ga0207705_10067227 3300025909 Bacteria 2593
97 Ga0207657_10025092 3300025919 Bacteria 5505
98 Ga0207657_10084428 3300025919 Bacteria 2661
99 Ga0207652_10093628 3300025921 Bacteria 2644
100 Ga0207681_10027758 3300025923 Bacteria 3663
101 Ga0207650_10038715 3300025925 Bacteria 3484
102 Ga0207664_10236329 3300025929 Bacteria 1590
103 Ga0207709_10016136 3300025935 Bacteria 4149
104 Ga0207691_10001681 3300025940 Bacteria 21848
105 Ga0207691_10043563 3300025940 Bacteria 4135
106 Ga0207711_10036138 3300025941 Bacteria 4191
107 Ga0207711_10210261 3300025941 Bacteria 1777
108 Ga0207668_10123502 3300025972 Bacteria 1964
109 Ga0207683_10110965 3300026121 Bacteria 2455
110 Ga0209371_1000004 3300027312 Bacteria 1098197
111 Ga0209371_1000059 3300027312 Bacteria 237154
112 Ga0209969_1002778 3300027360 Bacteria 2425
113 Ga0209999_1000861 3300027543 Bacteria 5049
114 Ga0209971_1001015 3300027682 Bacteria 7179
115 Ga0209974_10005272 3300027876 Bacteria 4561
116 Ga0209974_10008697 3300027876 Bacteria 3460
117 Ga0268256_1000005 3300030500 Bacteria 1082342
118 Ga0268256_1000055 3300030500 Bacteria 237299
119 Ga0316177_1200453 3300030731 Bacteria 5380
120 Ga0316183_1021352 3300030742 Bacteria 6690
121 Ga0307513_10035909 3300031456 Bacteria 5540
122 Ga0307513_10077701 3300031456 Bacteria 3436
123 Ga0307406_10093358 3300031901 Bacteria 2031
124 Ga0307412_10129803 3300031911 Bacteria 1829
125 Ga0307414_10004638 3300032004 Bacteria 7483
126 Ga0307414_10198900 3300032004 Bacteria 1628
127 Ga0307414_10235021 3300032004 Bacteria 1514
128 Ga0307411_10134840 3300032005 Bacteria 1811
129 Ga0395900_0017424 3300037418 Bacteria 7333
130 Ga0395905_0001513 3300037471 Bacteria 27801
131 Ga0395905_0026215 3300037471 Bacteria 5497
132 Ga0237819_01037 3300038705 Bacteria 8299
133 Ga0237816_00225 3300039145 Bacteria 4703
134 Ga0439436_0021894 3300041404 Bacteria 1896
135 Ga0439436_0024040 3300041404 Bacteria 1800
136 Ga0439465_0002731 3300041413 Bacteria 5769
137 Ga0439465_0033374 3300041413 Bacteria 1646
138 Ga0451837_0506415 3300041494 Bacteria 5131
139 Ga0451843_0278408 3300041509 Bacteria 1788
140 Ga0451843_0516816 3300041509 Bacteria 2897
141 Ga0439432_044456 3300042006 Bacteria 1399
142 Ga0439449_0000042 3300042007 Bacteria 38864
143 Ga0439449_0008170 3300042007 Bacteria 3978
144 Ga0439449_0011457 3300042007 Bacteria 3336
145 Ga0439449_0027891 3300042007 Bacteria 2106
146 Ga0439434_0031108 3300042435 Bacteria 1622
147 Ga0495638_0001916 3300046460 Bacteria 17928
148 Ga0495638_0044637 3300046460 Bacteria 2791
149 Ga0495610_0015182 3300046512 Bacteria 4488
150 Ga0495631_0011755 3300046518 Bacteria 4293
151 Ga0495643_0006783 3300046522 Bacteria 7485
152 Ga0495663_0003189 3300046525 Bacteria 4778
153 Ga0495663_0009666 3300046525 Bacteria 2675
154 Ga0495598_0000443 3300046537 Bacteria 7523
155 Ga0495621_0001234 3300046539 Bacteria 6589
156 Ga0495633_0054499 3300046558 Bacteria 1881
157 Ga0495672_0000596 3300047320 Bacteria 40742
158 Ga0495686_0025951 3300047472 Bacteria 3836
159 Ga0496101_0051736 3300048904 Bacteria 2960
160 Ga0496102_0251122 3300048905 Bacteria 1668
161 Ga0496107_0260657 3300048910 Bacteria 1290
162 Ga0496108_0071601 3300048911 Bacteria 2925
163 Ga0496109_0011395 3300048912 Bacteria 7641
164 Ga0496109_0135386 3300048912 Bacteria 2301
165 Ga0496112_0008841 3300048915 Bacteria 9037
166 Ga0496112_0078357 3300048915 Bacteria 3268
167 Ga0496113_0012334 3300048916 Bacteria 5741
168 Ga0496113_0019855 3300048916 Bacteria 4711
169 Ga0496115_0223525 3300048918 Bacteria 1554
170 Ga0496116_0018428 3300048919 Bacteria 5383
171 Ga0496117_0001291 3300048920 Bacteria 36931
172 Ga0496117_0002052 3300048920 Bacteria 26646
173 Ga0496117_0032220 3300048920 Bacteria 3985
174 Ga0496117_0039640 3300048920 Bacteria 3473
175 Ga0496118_0000579 3300048921 Bacteria 60445
176 Ga0496118_0029200 3300048921 Bacteria 4629
177 Ga0496118_0039898 3300048921 Bacteria 3740
178 Ga0496119_0001105 3300048922 Bacteria 33982
179 Ga0496119_0005954 3300048922 Bacteria 11468
180 Ga0496120_0000161 3300048923 Bacteria 112351
181 Ga0496120_0000511 3300048923 Bacteria 60526
182 Ga0496121_0195032 3300048924 Bacteria 1448
183 Ga0496121_0195410 3300048924 Bacteria 1446
184 Ga0496122_0000647 3300048925 Bacteria 70731
185 Ga0496122_0000977 3300048925 Bacteria 51324
186 Ga0496122_0049039 3300048925 Bacteria 3240
187 Ga0496122_0080571 3300048925 Bacteria 2269
188 Ga0496122_0148792 3300048925 Bacteria 1449
189 Ga0496122_0149600 3300048925 Bacteria 1443
190 Ga0496123_0000234 3300048926 Bacteria 112524
191 Ga0496123_0000789 3300048926 Bacteria 51201
192 Ga0496123_0027221 3300048926 Bacteria 4263
193 Ga0496123_0123603 3300048926 Bacteria 1449
194 Ga0496124_0000415 3300048927 Bacteria 76192
195 Ga0496124_0001594 3300048927 Bacteria 32654
196 Ga0496124_0024795 3300048927 Bacteria 5445
197 Ga0496124_0026540 3300048927 Bacteria 5219
198 Ga0496124_0165158 3300048927 Bacteria 1721
199 Ga0496124_0203475 3300048927 Bacteria 1503
200 Ga0496124_0207408 3300048927 Bacteria 1485
201 Ga0496125_0149323 3300048928 Bacteria 1608
202 Ga0496126_0017577 3300048929 Bacteria 7125
203 Ga0496126_0049333 3300048929 Bacteria 3844
204 Ga0496126_0200570 3300048929 Bacteria 1685
205 Ga0501031_0084358 3300049568 Bacteria 2071
206 Ga0501032_0041868 3300049569 Bacteria 3108
207 Ga0501033_0001054 3300049570 Bacteria 25186
208 Ga0501034_0000563 3300049571 Bacteria 58800
209 Ga0501034_0012192 3300049571 Bacteria 8890
210 Ga0501034_0026565 3300049571 Bacteria 5895
211 Ga0501034_0095308 3300049571 Bacteria 2973
212 Ga0501034_0109319 3300049571 Bacteria 2756
213 Ga0501036_0136500 3300049572 Bacteria 2070
214 Ga0501037_0028361 3300049573 Bacteria 4134
215 Ga0501038_0057346 3300049574 Bacteria 3344
216 Ga0501039_0010368 3300049575 Bacteria 7108
217 Ga0501043_0011978 3300049579 Bacteria 6785
218 Ga0501043_0042217 3300049579 Bacteria 3584
219 Ga0501047_0075473 3300049581 Bacteria 3244
220 Ga0501068_0054347 3300049584 Bacteria 2426
221 Ga0501070_0016824 3300049586 Bacteria 6139
222 Ga0501225_0004237 3300049705 Bacteria 4282
223 Ga0501080_0035807 3300049742 Bacteria 4633
224 Ga0501035_0017618 3300049822 Bacteria 6591
225 Ga0501035_0041722 3300049822 Bacteria 4143
226 Ga0501044_0019698 3300049823 Bacteria 7210
227 Ga0501044_0199130 3300049823 Bacteria 1962
228 nmdc:mga00v17_534_c1 3300050491 Bacteria 21373

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300006237 Ga0097621_100030866 Ga0097621_1000308665 301
2 3300006358 Ga0068871_100028502 Ga0068871_1000285022 301
3 3300048910 Ga0496107_0260657 Ga0496107_0260657_250_1278 322
4 3300042007 Ga0439449_0011457 Ga0439449_0011457_1318_2436 329
5 3300041404 Ga0439436_0021894 Ga0439436_0021894_354_1499 332
6 3300003187 JGI25151J46595_10000551 JGI25151J46595_1000055120 335
7 3300025294 Ga0209025_1000015 Ga0209025_1000015551 335
8 3300005347 Ga0070668_100050864 Ga0070668_1000508641 336
9 3300025972 Ga0207668_10123502 Ga0207668_101235022 336
10 3300037418 Ga0395900_0017424 Ga0395900_0017424_834_1952 338
11 3300037471 Ga0395905_0001513 Ga0395905_0001513_17871_18989 338
12 3300015262 Ga0182007_10000103 Ga0182007_100001033 339
13 3300025292 Ga0209676_1015094 Ga0209676_10150942 339
14 3300025294 Ga0209025_1001366 Ga0209025_100136627 339
15 3300025297 Ga0209758_1045075 Ga0209758_10450751 339
16 3300025304 Ga0209257_1027817 Ga0209257_10278171 339
17 3300003323 rootH1_10047596 rootH1_100475962 340
18 3300005355 Ga0070671_100004662 Ga0070671_1000046623 340
19 3300025941 Ga0207711_10210261 Ga0207711_102102612 340
20 3300032004 Ga0307414_10198900 Ga0307414_101989002 340
21 3300048904 Ga0496101_0051736 Ga0496101_0051736_1602_2723 340
22 3300048911 Ga0496108_0071601 Ga0496108_0071601_868_1989 340
23 3300048912 Ga0496109_0011395 Ga0496109_0011395_5813_6934 340
24 3300048915 Ga0496112_0008841 Ga0496112_0008841_2215_3336 340
25 3300048916 Ga0496113_0012334 Ga0496113_0012334_4579_5700 340
26 3300048918 Ga0496115_0223525 Ga0496115_0223525_387_1523 341
27 3300005355 Ga0070671_100020476 Ga0070671_1000204764 342
28 3300012512 Ga0157327_1000200 Ga0157327_10002002 342
29 3300048905 Ga0496102_0251122 Ga0496102_0251122_310_1512 342
30 3300048912 Ga0496109_0135386 Ga0496109_0135386_1116_2252 342
31 3300048915 Ga0496112_0078357 Ga0496112_0078357_412_1614 342
32 3300048916 Ga0496113_0019855 Ga0496113_0019855_1874_3076 342
33 3300048927 Ga0496124_0203475 Ga0496124_0203475_100_1248 342
34 3300031911 Ga0307412_10129803 Ga0307412_101298032 344
35 3300042007 Ga0439449_0008170 Ga0439449_0008170_613_1749 344
36 3300048929 Ga0496126_0200570 Ga0496126_0200570_137_1285 344
37 3300048927 Ga0496124_0165158 Ga0496124_0165158_298_1443 345
38 3300049571 Ga0501034_0000563 Ga0501034_0000563_6225_7310 345
39 3300003775 Ga0055524_1025192 Ga0055524_10251922 346
40 3300005262 Ga0065165_1018475 Ga0065165_10184751 346
41 3300025292 Ga0209676_1001686 Ga0209676_10016867 346
42 3300025299 Ga0209256_1006850 Ga0209256_10068504 346
43 3300025304 Ga0209257_1004180 Ga0209257_10041807 346
44 3300046537 Ga0495598_0000443 Ga0495598_0000443_1377_2516 346
45 3300048927 Ga0496124_0001594 Ga0496124_0001594_2558_3712 346
46 3300032004 Ga0307414_10004638 Ga0307414_100046388 347
47 3300041494 Ga0451837_0506415 Ga0451837_0506415_761_1894 347
48 3300003773 Ga0055537_1000914 Ga0055537_10009147 348
49 3300003784 Ga0055534_1000364 Ga0055534_10003643 348
50 3300003790 Ga0055528_1000453 Ga0055528_10004536 348
51 3300006051 Ga0075364_10015439 Ga0075364_100154392 348
52 3300014497 Ga0182008_10014349 Ga0182008_100143492 348
53 3300015261 Ga0182006_1032819 Ga0182006_10328193 348
54 3300025263 Ga0209565_1000014 Ga0209565_100001456 348
55 3300025273 Ga0209673_1000065 Ga0209673_1000065193 348
56 3300025291 Ga0209675_1000011 Ga0209675_1000011336 348
57 3300025292 Ga0209676_1002207 Ga0209676_10022074 348
58 3300025295 Ga0209564_1000775 Ga0209564_10007756 348
59 3300025298 Ga0209050_1000689 Ga0209050_100068933 348
60 3300025298 Ga0209050_1003287 Ga0209050_10032874 348
61 3300025299 Ga0209256_1007188 Ga0209256_10071882 348
62 3300025303 Ga0209051_1003546 Ga0209051_10035464 348
63 3300025304 Ga0209257_1000014 Ga0209257_1000014814 348
64 3300042006 Ga0439432_044456 Ga0439432_044456_118_1266 348
65 3300046522 Ga0495643_0006783 Ga0495643_0006783_5998_7146 348
66 3300047320 Ga0495672_0000596 Ga0495672_0000596_36385_37533 348
67 3300048920 Ga0496117_0039640 Ga0496117_0039640_2286_3434 348
68 3300048921 Ga0496118_0039898 Ga0496118_0039898_2299_3447 348
69 3300048928 Ga0496125_0149323 Ga0496125_0149323_435_1583 348
70 3300003856 Ga0058692_1000023 Ga0058692_100002383 349
71 3300009148 Ga0105243_10050359 Ga0105243_100503592 349
72 3300025935 Ga0207709_10016136 Ga0207709_100161364 349
73 3300027312 Ga0209371_1000059 Ga0209371_100005983 349
74 3300030500 Ga0268256_1000055 Ga0268256_1000055115 349
75 3300030742 Ga0316183_1021352 Ga0316183_10213523 349
76 3300005547 Ga0070693_100007344 Ga0070693_1000073445 350
77 3300032005 Ga0307411_10134840 Ga0307411_101348401 350
78 3300037471 Ga0395905_0026215 Ga0395905_0026215_691_1761 350
79 3300039145 Ga0237816_00225 Ga0237816_00225_183_1253 350
80 3300041413 Ga0439465_0033374 Ga0439465_0033374_21_1094 350
81 3300048925 Ga0496122_0000977 Ga0496122_0000977_41028_42161 350
82 3300048926 Ga0496123_0000789 Ga0496123_0000789_41015_42148 350
83 3300009036 Ga0105244_10016523 Ga0105244_100165232 351
84 3300015265 Ga0182005_1000251 Ga0182005_10002513 351
85 3300030731 Ga0316177_1200453 Ga0316177_12004532 351
86 3300048919 Ga0496116_0018428 Ga0496116_0018428_1773_2918 351
87 3300005564 Ga0070664_100057618 Ga0070664_1000576184 352
88 3300009098 Ga0105245_10108532 Ga0105245_101085321 352
89 3300041509 Ga0451843_0516816 Ga0451843_0516816_731_1861 352
90 3300048920 Ga0496117_0001291 Ga0496117_0001291_35426_36571 352
91 3300048921 Ga0496118_0000579 Ga0496118_0000579_6136_7281 352
92 3300048927 Ga0496124_0207408 Ga0496124_0207408_139_1284 352
93 3300005354 Ga0070675_100223125 Ga0070675_1002231251 353
94 3300046512 Ga0495610_0015182 Ga0495610_0015182_2988_4229 354
95 3300046518 Ga0495631_0011755 Ga0495631_0011755_2743_3984 354
96 3300013296 Ga0157374_10049256 Ga0157374_100492564 355
97 3300046460 Ga0495638_0044637 Ga0495638_0044637_394_1479 355
98 3300005539 Ga0068853_100213009 Ga0068853_1002130092 356
99 3300032004 Ga0307414_10235021 Ga0307414_102350211 357
100 3300042007 Ga0439449_0000042 Ga0439449_0000042_17949_19043 357
101 iso_pu_bacteria 2894414249 2894415524 357
102 iso_pu_bacteria 8002869464 8002871975 357
103 3300025929 Ga0207664_10236329 Ga0207664_102363291 358
104 3300031456 Ga0307513_10077701 Ga0307513_100777013 358
105 3300049579 Ga0501043_0011978 Ga0501043_0011978_2443_3576 358
106 3300006048 Ga0075363_100121805 Ga0075363_1001218052 359
107 3300017792 Ga0163161_10061625 Ga0163161_100616251 359
108 3300048925 Ga0496122_0148792 Ga0496122_0148792_56_1318 359
109 3300048926 Ga0496123_0123603 Ga0496123_0123603_132_1394 359
110 3300048927 Ga0496124_0024795 Ga0496124_0024795_2618_3880 359
111 iso_pu_bacteria 2643221573 2643879176 359
112 iso_pu_bacteria 2643221720 2644660477 359
113 iso_pu_bacteria 2643221728 2644697837 359
114 3300013102 Ga0157371_10000337 Ga0157371_100003373 360
115 3300026121 Ga0207683_10110965 Ga0207683_101109652 360
116 3300048922 Ga0496119_0005954 Ga0496119_0005954_4209_5354 360
117 3300048923 Ga0496120_0000511 Ga0496120_0000511_6157_7302 360
118 3300048924 Ga0496121_0195032 Ga0496121_0195032_155_1300 360
119 3300048929 Ga0496126_0017577 Ga0496126_0017577_4785_5930 360
120 iso_pu_bacteria 2524614729 2525556636 360
121 iso_pu_bacteria 2627854209 2630648232 360
122 iso_pu_bacteria 2643221559 2643815141 360
123 iso_pu_bacteria 2643221586 2643938027 360
124 iso_pu_bacteria 2643221612 2644076877 360
125 iso_pu_bacteria 2643221727 2644695192 360
126 iso_pu_bacteria 8003014200 8003014384 360
127 3300049571 Ga0501034_0109319 Ga0501034_0109319_1246_2343 361
128 3300025304 Ga0209257_1000170 Ga0209257_100017093 362
129 3300031456 Ga0307513_10035909 Ga0307513_100359091 362
130 iso_pu_bacteria 2895498888 2895504087 362
131 iso_pu_bacteria 2895511927 2895515441 362
132 iso_pu_bacteria 2895522137 2895525048 362
133 iso_pu_bacteria 2895525241 2895527757 362
134 3300014497 Ga0182008_10000115 Ga0182008_1000011555 363
135 3300041404 Ga0439436_0024040 Ga0439436_0024040_353_1462 363
136 3300041413 Ga0439465_0002731 Ga0439465_0002731_3151_4260 363
137 3300041509 Ga0451843_0278408 Ga0451843_0278408_378_1487 363
138 3300042007 Ga0439449_0027891 Ga0439449_0027891_620_1729 363
139 3300042435 Ga0439434_0031108 Ga0439434_0031108_183_1292 363
140 3300046525 Ga0495663_0003189 Ga0495663_0003189_2210_3319 363
141 3300048920 Ga0496117_0032220 Ga0496117_0032220_2598_3746 363
142 3300048921 Ga0496118_0029200 Ga0496118_0029200_887_2035 363
143 3300003771 Ga0055526_1008668 Ga0055526_10086686 364
144 3300003791 Ga0055530_10006205 Ga0055530_100062056 364
145 3300005353 Ga0070669_100290657 Ga0070669_1002906571 364
146 3300005356 Ga0070674_100032818 Ga0070674_1000328182 364
147 3300009176 Ga0105242_10071381 Ga0105242_100713812 364
148 3300013102 Ga0157371_10151298 Ga0157371_101512981 364
149 3300013105 Ga0157369_10095881 Ga0157369_100958813 364
150 3300025295 Ga0209564_1006112 Ga0209564_10061126 364
151 3300025298 Ga0209050_1006429 Ga0209050_10064297 364
152 3300025299 Ga0209256_1005445 Ga0209256_10054452 364
153 3300025304 Ga0209257_1009439 Ga0209257_10094392 364
154 3300025923 Ga0207681_10027758 Ga0207681_100277582 364
155 3300025940 Ga0207691_10001681 Ga0207691_1000168112 364
156 3300048925 Ga0496122_0149600 Ga0496122_0149600_56_1204 364
157 3300048927 Ga0496124_0026540 Ga0496124_0026540_2021_3166 364
158 iso_pu_bacteria 2643221579 2643905980 364
159 iso_pu_bacteria 2643221581 2643916548 364
160 iso_pu_bacteria 2923516293 2923518324 364
161 iso_pu_bacteria 2941489479 2941490758 364
162 iso_pu_bacteria 2995948881 2995951289 364
163 3300009993 Ga0105028_106953 Ga0105028_1069531 365
164 3300025245 Ga0207425_1023692 Ga0207425_10236921 365
165 3300025273 Ga0209673_1010517 Ga0209673_10105172 365
166 3300025291 Ga0209675_1011964 Ga0209675_10119643 365
167 3300025292 Ga0209676_1002230 Ga0209676_10022302 365
168 3300025304 Ga0209257_1000462 Ga0209257_100046246 365
169 3300048929 Ga0496126_0049333 Ga0496126_0049333_1541_2680 365
170 3300049569 Ga0501032_0041868 Ga0501032_0041868_776_1912 365
171 3300049571 Ga0501034_0012192 Ga0501034_0012192_1109_2245 365
172 3300049571 Ga0501034_0026565 Ga0501034_0026565_4463_5599 365
173 3300049572 Ga0501036_0136500 Ga0501036_0136500_882_2018 365
174 3300049573 Ga0501037_0028361 Ga0501037_0028361_2236_3372 365
175 3300049574 Ga0501038_0057346 Ga0501038_0057346_610_1746 365
176 3300049575 Ga0501039_0010368 Ga0501039_0010368_1794_2930 365
177 3300049579 Ga0501043_0042217 Ga0501043_0042217_124_1260 365
178 3300049581 Ga0501047_0075473 Ga0501047_0075473_801_1937 365
179 3300049584 Ga0501068_0054347 Ga0501068_0054347_1001_2137 365
180 3300049586 Ga0501070_0016824 Ga0501070_0016824_3133_4269 365
181 3300049742 Ga0501080_0035807 Ga0501080_0035807_864_2000 365
182 3300049822 Ga0501035_0017618 Ga0501035_0017618_2393_3529 365
183 3300049823 Ga0501044_0019698 Ga0501044_0019698_3190_4326 365
184 3300049823 Ga0501044_0199130 Ga0501044_0199130_746_1882 365
185 iso_pu_bacteria 2643221593 2643974032 365
186 iso_pu_bacteria 8021622325 8021624555 365
187 iso_pu_bacteria 8021626552 8021627885 365
188 iso_pu_bacteria 8021648035 8021649527 365
189 3300005435 Ga0070714_100194212 Ga0070714_1001942122 366
190 3300009011 Ga0105251_10002140 Ga0105251_100021402 366
191 3300046525 Ga0495663_0009666 Ga0495663_0009666_738_1877 366
192 3300046539 Ga0495621_0001234 Ga0495621_0001234_4128_5267 366
193 3300048920 Ga0496117_0002052 Ga0496117_0002052_5752_6861 366
194 3300048922 Ga0496119_0001105 Ga0496119_0001105_6725_7834 366
195 3300048923 Ga0496120_0000161 Ga0496120_0000161_39849_40958 366
196 3300048925 Ga0496122_0000647 Ga0496122_0000647_13998_15107 366
197 3300048926 Ga0496123_0000234 Ga0496123_0000234_39813_40922 366
198 3300048927 Ga0496124_0000415 Ga0496124_0000415_68845_69954 366
199 3300049568 Ga0501031_0084358 Ga0501031_0084358_330_1496 366
200 3300049571 Ga0501034_0095308 Ga0501034_0095308_1013_2179 366
201 3300049822 Ga0501035_0041722 Ga0501035_0041722_28_1194 366
202 iso_pu_bacteria 2818991457 2819663118 366
203 iso_pu_bacteria 2852684882 2852685899 366
204 iso_pu_bacteria 2919130084 2919133745 366
205 iso_pu_bacteria 2929195423 2929197520 366
206 3300005288 Ga0065714_10009669 Ga0065714_100096693 367
207 3300005289 Ga0065704_10072741 Ga0065704_100727411 367
208 3300005331 Ga0070670_100259529 Ga0070670_1002595291 367
209 3300025294 Ga0209025_1003545 Ga0209025_100354513 367
210 3300025735 Ga0207713_1007609 Ga0207713_10076092 367
211 3300025925 Ga0207650_10038715 Ga0207650_100387151 367
212 3300025940 Ga0207691_10043563 Ga0207691_100435632 367
213 3300027876 Ga0209974_10008697 Ga0209974_100086974 367
214 3300049570 Ga0501033_0001054 Ga0501033_0001054_19254_20399 367
215 3300005366 Ga0070659_100110045 Ga0070659_1001100452 368
216 3300009979 Ga0105032_100666 Ga0105032_1006664 368
217 3300013307 Ga0157372_10133972 Ga0157372_101339722 368
218 3300025292 Ga0209676_1000170 Ga0209676_100017056 368
219 3300025919 Ga0207657_10084428 Ga0207657_100844282 368
220 3300025941 Ga0207711_10036138 Ga0207711_100361382 368
221 3300005336 Ga0070680_100050855 Ga0070680_1000508552 369
222 3300005339 Ga0070660_100041385 Ga0070660_1000413852 369
223 3300005530 Ga0070679_100089479 Ga0070679_1000894791 369
224 3300013307 Ga0157372_10128511 Ga0157372_101285111 369
225 3300025909 Ga0207705_10067227 Ga0207705_100672274 369
226 3300025919 Ga0207657_10025092 Ga0207657_100250922 369
227 3300025921 Ga0207652_10093628 Ga0207652_100936281 369
228 3300031901 Ga0307406_10093358 Ga0307406_100933582 369
229 3300048925 Ga0496122_0080571 Ga0496122_0080571_417_1562 370
230 iso_pu_bacteria 2842757796 2842758366 370
231 3300005293 Ga0065715_10020278 Ga0065715_100202782 371
232 3300047472 Ga0495686_0025951 Ga0495686_0025951_1438_2589 371
233 3300048925 Ga0496122_0049039 Ga0496122_0049039_346_1488 371
234 3300048926 Ga0496123_0027221 Ga0496123_0027221_2462_3604 371
235 3300049705 Ga0501225_0004237 Ga0501225_0004237_2031_3173 371
236 3300027360 Ga0209969_1002778 Ga0209969_10027782 372
237 3300027543 Ga0209999_1000861 Ga0209999_10008612 372
238 3300027682 Ga0209971_1001015 Ga0209971_10010153 372
239 3300027876 Ga0209974_10005272 Ga0209974_100052724 372
240 3300038705 Ga0237819_01037 Ga0237819_01037_1746_2894 372
241 iso_pu_bacteria 2576861471 2578458643 372
242 iso_pu_bacteria 2852649853 2852651033 372
243 iso_pu_bacteria 2857442823 2857446018 372
244 iso_pu_bacteria 2937610967 2937612174 372
245 iso_pu_bacteria 2939622612 2939623012 372
246 iso_pu_bacteria 2941475908 2941478090 372
247 iso_pu_bacteria 2974307012 2974309162 372
248 iso_pu_bacteria 2977247770 2977249880 372
249 iso_pu_bacteria 2984514374 2984515630 372
250 3300006051 Ga0075364_10000189 Ga0075364_1000018918 373
251 3300050491 nmdc:mga00v17_534_c1 nmdc:mga00v17_534_c1_17130_18281 373
252 3300003856 Ga0058692_1000002 Ga0058692_10000023 375
253 3300027312 Ga0209371_1000004 Ga0209371_1000004211 375
254 3300030500 Ga0268256_1000005 Ga0268256_1000005834 375
255 3300013100 Ga0157373_10160509 Ga0157373_101605092 376
256 3300013100 Ga0157373_10199246 Ga0157373_101992462 376
257 3300046460 Ga0495638_0001916 Ga0495638_0001916_14219_15367 376
258 3300046558 Ga0495633_0054499 Ga0495633_0054499_36_1187 376
259 3300048924 Ga0496121_0195410 Ga0496121_0195410_118_1269 376
260 3300002773 JGI25152J39213_1000036 JGI25152J39213_100003611 378
261 3300002774 JGI25150J39212_1000344 JGI25150J39212_10003445 378
262 3300003187 JGI25151J46595_10000561 JGI25151J46595_1000056115 378
263 3300003215 JGI25153J46596_10000058 JGI25153J46596_10000058105 378
264 3300025245 Ga0207425_1000011 Ga0207425_1000011445 378
265 3300025258 Ga0209129_1000031 Ga0209129_1000031259 378
266 3300025294 Ga0209025_1000012 Ga0209025_1000012759 378
267 3300025297 Ga0209758_1000143 Ga0209758_100014347 378

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13437

HlyD_3

HlyD family secretion protein

216

316

0.93

PF13533

Biotin_lipoyl_2

Biotin-lipoyl like

120

168

0.86

PF00529

CusB_dom_1

Cation efflux system protein CusB domain 1

80

385

0.82

PF16576

HlyD_D23

Barrel-sandwich domain of CusB or HlyD membrane-fusion

106

319

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
1wp1-assembly2.cif.gz_B crystal structure of the drug-discharge outer membrane protein, oprm 0.9603 108 170
3mxz-assembly1.cif.gz_A crystal structure of tubulin folding cofactor a from arabidopsis thaliana 0.9453 108 170
3tul-assembly5.cif.gz_C crystal structure of n-terminal region of type iii secretion major translocator sipb (residues 82-226) 0.9352 108 170
7ybu-assembly1.cif.gz_A human propionyl-coenzyme a carboxylase 0.92 76 200
3qo5-assembly1.cif.gz_A-2 crystal structure of the seryl-trna synthetase from candida albicans 0.9156 108 170
ID Description Score Start End Superfamily
af_Q9XUS7_9_301_1.20.1270.60 Mainly Alpha;Up-down Bundle;Substrate Binding Domain Of Dnak; Chain:A; Domain 2;Arfaptin homology (AH) domain/BAR domain 0.9632 108 170 1.20.1270.60
2f1mA03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9625 108 170 1.10.287.470
1wp1B01 Mainly Alpha;Up-down Bundle;Outer membrane efflux proteins (OEP);Outer membrane efflux proteins (OEP) 0.9603 108 170 1.20.1600.10
1vf7M03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9573 110 167 1.10.287.470
4l8jA03 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.9566 74 202 2.40.50.100
ID Description Score Start End GO Terms
AF-A0A7V5FP10-F1-model_v4 Biotin/lipoyl-binding protein 0.9697 76 172 GO:0016020
AF-A0A1J4QCI9-F1-model_v4 RND efflux pump membrane fusion protein barrel-sandwich domain-containing protein 0.922 89 278 GO:0015562
GO:1990281
AF-A0A1J4QCI9-F1-model_v4 RND efflux pump membrane fusion protein barrel-sandwich domain-containing protein 0.9037 89 278 GO:0015562
GO:1990281
AF-A0A157SNJ6-F1-model_v4 HlyD family secretion protein 0.9019 88 278 GO:0015562
GO:1990281
AF-A0A2R7PYC3-F1-model_v4 deleted 0.8963 39 320

Feature Viewer

pLDDT pTM Quality
80.01 0.6 Medium
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Predicted Structure (AlphaFold2)

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