F374431

General Info

Members Datasets Scaffolds Average Seq Length
266 228 532 486

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2861691609|2861694360
Length 552
Sequence TADTETQRSAEHSGKGTKPGKKPGKNPDKRAGKGRGKSGGKGAAKKALRKASRNTVGTEPSRSEEDLAVATVRKVAMETAKTRPEHDLLGEGEVPADALWGIHTKRAVANFPITGVPVGHYPELVRALALVKQAAARANHRLGYLSKAKAEVIDEACTLVATDPVYAEAFVVDAIQGGAGTSTNMNANEVIANVGLRLMGRAPGDYAALHPNDDVNMAQSTNDAYPTALRLAVIFATQPLVKALDDLAYAFKSKAVEFADVLKMGRTQLQDAVPMTLGQEFDGFHATIKEDVARLTEIVGLFREVNLGATAIGTGINADPRYAALAVEELSRLSGQPMVLASNLIEATSDLGAFVLFSGTLKRVAVKLSKICNDLRLLSSGPRTGLGEIRLPAVQAGSSIMPGKVNPVIPEVVNQVAYMVIGHDLTVTLCAEGGQLQLNAFEPTIGYCVLSSLRMLSAAIDTLTKRCVEGIEADRERCRSLVQGSIGLVTALAPTLGYEASSRIARRALKENRPVAELVLEEGLLTEAQLNALLELEAMTHPTRRQKAGTAG

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
6 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
7 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
11 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
18 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
19 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
20 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
21 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
22 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
23 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
24 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
25 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
26 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
29 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
30 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
31 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
32 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
33 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
41 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
45 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
46 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
47 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
48 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
49 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
50 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
68 3300027357 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes) (version 2) Metagenome Nodule
69 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
70 3300027363 Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW (SPAdes) (version 2) Metagenome Nodule
71 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
72 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
73 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
74 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
75 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
76 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
77 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
78 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
79 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
80 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
81 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
82 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
83 3300033442 Root nodule microbial communities collected in Santa Monica, California, United States - Edamame nodules 1 Metagenome Nodule
84 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
85 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
86 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
87 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
88 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
89 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
90 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
91 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
92 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
93 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
94 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
95 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
96 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
97 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
98 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
99 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
100 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
101 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
102 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
103 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
104 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
105 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
106 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
107 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
108 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
109 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
110 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
111 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
112 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
113 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
114 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
115 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
116 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
117 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
118 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
119 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
120 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
121 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
122 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
123 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
124 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
125 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
126 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
127 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
128 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
129 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
132 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
133 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
135 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
137 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
138 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
139 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
140 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
141 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
142 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
143 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
144 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
145 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
146 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
147 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
148 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
149 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
150 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
151 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
152 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
153 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
154 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
155 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
156 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
157 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
158 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
159 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
160 2861691609 Methylorubrum thiocyanatum DSM 11490 Isolate Rhizosphere
161 2508501128 Bradyrhizobium sp. ARR65 Isolate Nodule
162 2513237096 Bradyrhizobium pachyrhizi USDA 3259 Isolate Nodule
163 2513237137 Bradyrhizobium elkanii USDA 94 Isolate Nodule
164 2513237141 Bradyrhizobium sp. TV2a.2 Isolate Nodule
165 2513237145 Bradyrhizobium elkanii USDA 3254 Isolate Nodule
166 2516143018 Ensifer sp. BR816 Isolate Nodule
167 2517572143 Bradyrhizobium elkanii USDA 76 Isolate Nodule
168 2523231067 Pleomorphomonas oryzae DSM 16300 Isolate Unclassified
169 2524023228 Bradyrhizobium sp. Th.b2 Isolate Nodule
170 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
171 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
172 2643221546 Microbacterium sp. Root53 Isolate Unclassified
173 2643221549 Agromyces sp. Root1464 Isolate Unclassified
174 2643221572 Leifsonia sp. Root60 Isolate Unclassified
175 2643221619 Agromyces sp. Root81 Isolate Unclassified
176 2643221649 Leifsonia sp. Root4 Isolate Unclassified
177 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
178 2643221736 Bosea sp. Root483D1 Isolate Unclassified
179 2667528175 Rhizobium tropici NFR14 Isolate Rhizoplane
180 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
181 2728368998 Bradyrhizobium macuxiense BR 10303 Isolate Nodule
182 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
183 2739367866 Hymenobacter sp. YR204 Isolate Unclassified
184 2791355197 Bradyrhizobium sp. C9 Isolate Nodule
185 2808606372 Agromyces sp. 23-23 Isolate Unclassified
186 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
187 2818991318 Humibacillus xanthopallidus SLBN-155 Isolate Unclassified
188 2818991462 Terrabacter sp. 3264 Isolate Rhizosphere
189 2829745981 Methylorubrum rhodinum DSM 2163 Isolate Rhizosphere
190 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
191 2840677318 Chitinophaga alhagiae T22 Isolate Unclassified
192 2841760612 Bosea sp. Tri-49 Isolate Nodule
193 2842205361 Rhizobium etli SEMIA 471 Isolate Nodule
194 2842278818 Rhizobium etli SEMIA 489 Isolate Nodule
195 2842698319 Methylobacterium sp. R-72139 Isolate Unclassified
196 2844104063 Bosea sp. Tri-39 Isolate Nodule
197 2851246043 Bosea sp. Tri-54 Isolate Nodule
198 2885374607 Bradyrhizobium sp. NAS96.2 Isolate Unclassified
199 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
200 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
201 2903748898 Bradyrhizobium uaiense UFLA 03-164 Isolate Nodule
202 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
203 2904690495 Bradyrhizobium ivorense CI-1B Isolate Nodule
204 2904699407
205 2906610324
206 2906635258 Bradyrhizobium sp. USDA 3458 Isolate Unclassified
207 2906660503 Bradyrhizobium brasilense UFLA 03-321 Isolate Unclassified
208 2908739725 Bradyrhizobium sp. UFLA03-84 Isolate Nodule
209 2908756301 Bradyrhizobium ivorense CI-41S Isolate Nodule
210 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
211 2922425934
212 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
213 2935630451 Bradyrhizobium sp. I1.14.4 Isolate Nodule
214 2941507105 Bradyrhizobium sp. i1.12.3 Isolate Nodule
215 2941515067 Bradyrhizobium sp. i1.14.1 Isolate Nodule
216 2941523033 Bradyrhizobium sp. i1.8.4 Isolate Nodule
217 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
218 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
219 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
220 3005474847 Bradyrhizobium sp. CCBAU 53421 Isolate Nodule
221 8002745576 Marinomonas spartinae USM8 Isolate Rhizosphere
222 8005289223 Rhizobium bangladeshense 1002 Isolate Nodule
223 8006933436 Bradyrhizobium septentrionale 7(2017) Isolate Unclassified
224 8006973647 Bradyrhizobium septentrionale 162S2 Isolate Nodule
225 8019555841 Bradyrhizobium sp. JR6.1 Isolate Nodule
226 8019565922 Bradyrhizobium sp. JR3.5 Isolate Nodule
227 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
228 8056689827 Bradyrhizobium semiaridum WSM 1704 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 74.9
Metatranscriptomes 0
Isolates 25.1

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.89
Nodule 13.16
Rhizoplane 5.26
Rhizosphere 60.53
Stem 0
Stem Tuber 0
Unclassified 0.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2307802 2162886007 Bacteria 1748
2 Ga0070683_100000133 3300005329 Bacteria 48074
3 Ga0070670_100011025 3300005331 Bacteria 7722
4 Ga0070666_10001556 3300005335 Bacteria 13925
5 Ga0070691_10000568 3300005341 Bacteria 14107
6 Ga0070692_10016448 3300005345 Bacteria 3518
7 Ga0070688_100039262 3300005365 Bacteria 2896
8 Ga0070709_10001753 3300005434 Bacteria 11794
9 Ga0070714_100006751 3300005435 Bacteria 8894
10 Ga0070710_10002982 3300005437 Bacteria 8043
11 Ga0070694_100000391 3300005444 Bacteria 23747
12 Ga0070681_10283471 3300005458 Bacteria 1568
13 Ga0070706_100003193 3300005467 Bacteria 16177
14 Ga0070706_100004960 3300005467 Bacteria 12741
15 Ga0070707_100010585 3300005468 Bacteria 8588
16 Ga0070698_100091318 3300005471 Bacteria 3028
17 Ga0070684_100000092 3300005535 Bacteria 58818
18 Ga0070697_100000090 3300005536 Bacteria 75895
19 Ga0070696_100016833 3300005546 Bacteria 4931
20 Ga0070696_100055074 3300005546 Bacteria 2774
21 Ga0070704_100002756 3300005549 Bacteria 9934
22 Ga0070664_100004299 3300005564 Bacteria 11454
23 Ga0068857_100000059 3300005577 Bacteria 61937
24 Ga0068856_100004667 3300005614 Bacteria 13610
25 Ga0075365_10014288 3300006038 Bacteria 4774
26 Ga0070716_100007891 3300006173 Bacteria 5267
27 Ga0070712_100104068 3300006175 Bacteria 2106
28 Ga0075369_10003014 3300006186 Bacteria 6094
29 Ga0075428_100036945 3300006844 Bacteria 5379
30 Ga0075430_100054325 3300006846 Bacteria 3370
31 Ga0075430_100172676 3300006846 Bacteria 1798
32 Ga0075431_100158695 3300006847 Bacteria 2326
33 Ga0075433_10211873 3300006852 Bacteria 1721
34 Ga0075429_100053589 3300006880 Bacteria 3510
35 Ga0075436_100058486 3300006914 Bacteria 2662
36 Ga0079104_1000179 3300006946 Bacteria 90381
37 Ga0105240_10000009 3300009093 Bacteria 591332
38 Ga0111539_10121037 3300009094 Bacteria 3067
39 Ga0114129_10019849 3300009147 Bacteria 9565
40 Ga0105237_10000140 3300009545 Bacteria 101776
41 Ga0105237_10173243 3300009545 Bacteria 2158
42 Ga0105238_10071292 3300009551 Bacteria 3472
43 Ga0105238_10252131 3300009551 Bacteria 1743
44 Ga0105239_10033611 3300010375 Bacteria 5631
45 Ga0157373_10000002 3300013100 Bacteria 750094
46 Ga0157371_10101121 3300013102 Bacteria 2045
47 Ga0157370_10000136 3300013104 Bacteria 88390
48 Ga0157369_10000621 3300013105 Bacteria 46122
49 Ga0157369_10001631 3300013105 Bacteria 27415
50 Ga0157378_10033152 3300013297 Bacteria 4565
51 Ga0157375_10184149 3300013308 Bacteria 2241
52 Ga0163163_10007591 3300014325 Bacteria 9578
53 Ga0157380_10011659 3300014326 Bacteria 6355
54 Ga0213874_10012744 3300021377 Bacteria 2163
55 Ga0209233_1015038 3300025261 Bacteria 2167
56 Ga0209455_1003863 3300025272 Bacteria 5115
57 Ga0207692_10001864 3300025898 Bacteria 8008
58 Ga0207680_10000569 3300025903 Bacteria 17460
59 Ga0207647_10080753 3300025904 Bacteria 1950
60 Ga0207699_10000519 3300025906 Bacteria 19081
61 Ga0207684_10004096 3300025910 Bacteria 13881
62 Ga0207684_10075956 3300025910 Bacteria 2855
63 Ga0207695_10000038 3300025913 Bacteria 475092
64 Ga0207671_10000004 3300025914 Bacteria 1022356
65 Ga0207693_10005522 3300025915 Bacteria 10526
66 Ga0207663_10001163 3300025916 Bacteria 12146
67 Ga0207646_10013318 3300025922 Bacteria 7868
68 Ga0207694_10139053 3300025924 Bacteria 1952
69 Ga0207700_10000275 3300025928 Bacteria 30749
70 Ga0207700_10087719 3300025928 Bacteria 2447
71 Ga0207665_10001352 3300025939 Bacteria 16519
72 Ga0207661_10000389 3300025944 Bacteria 28457
73 Ga0207702_10004314 3300026078 Bacteria 12681
74 Ga0207674_10000152 3300026116 Bacteria 81433
75 Ga0209281_1000116 3300027111 Bacteria 209707
76 Ga0209589_1000015 3300027357 Bacteria 225913
77 Ga0209489_100015 3300027361 Bacteria 225913
78 Ga0209700_100025 3300027363 Bacteria 225913
79 Ga0265338_10000354 3300028800 Bacteria 83047
80 Ga0265338_10097116 3300028800 Bacteria 2415
81 Ga0265330_10001195 3300031235 Bacteria 15396
82 Ga0265330_10033907 3300031235 Bacteria 2281
83 Ga0265325_10059211 3300031241 Bacteria 1948
84 Ga0265327_10000038 3300031251 Bacteria 292416
85 Ga0265327_10004697 3300031251 Bacteria 11942
86 Ga0265316_10016311 3300031344 Bacteria 6449
87 Ga0265316_10057303 3300031344 Bacteria 3039
88 Ga0307508_10003931 3300031616 Bacteria 14746
89 Ga0316575_10006442 3300031665 Bacteria 4222
90 Ga0316576_10055071 3300031727 Bacteria 2902
91 Ga0316576_10113021 3300031727 Bacteria 2036
92 Ga0307405_10068759 3300031731 Bacteria 2268
93 Ga0307409_100148737 3300031995 Bacteria 2030
94 Ga0307416_100030422 3300032002 Bacteria 4050
95 Ga0307411_10094755 3300032005 Bacteria 2094
96 Ga0315911_1000047 3300033442 Bacteria 41134
97 Ga0373951_0000875 3300035091 Bacteria 8127
98 Ga0316574_0035270 3300035398 Bacteria 3056
99 Ga0373927_0039842 3300035695 Bacteria 3049
100 Ga0373947_0020149 3300035725 Bacteria 3849
101 Ga0373937_0069345 3300036401 Bacteria 3251
102 Ga0395905_0000221 3300037471 Bacteria 87203
103 Ga0395905_0000596 3300037471 Bacteria 48287
104 Ga0395905_0003330 3300037471 Bacteria 17245
105 Ga0395905_0025187 3300037471 Bacteria 5611
106 Ga0395905_0112689 3300037471 Bacteria 2555
107 Ga0436364_0243659 3300037853 Bacteria 2357
108 Ga0436364_0393163 3300037853 Bacteria 17103
109 Ga0436364_1323747 3300037853 Bacteria 3096
110 Ga0436365_0147566 3300039437 Bacteria 24744
111 Ga0436365_0399554 3300039437 Bacteria 7909
112 Ga0436365_1914043 3300039437 Bacteria 2280
113 Ga0436361_0788280 3300039447 Bacteria 2503
114 Ga0436361_1076339 3300039447 Bacteria 4419
115 Ga0436363_0198704 3300039450 Bacteria 4922
116 Ga0436363_1068861 3300039450 Bacteria 5791
117 Ga0436362_0029274 3300039453 Bacteria 2328
118 Ga0436362_1247210 3300039453 Bacteria 1924
119 Ga0439439_0018977 3300041406 Bacteria 1703
120 Ga0439461_0001630 3300041410 Bacteria 3484
121 Ga0439457_009231 3300042014 Bacteria 2301
122 Ga0450920_004428 3300042122 Bacteria 2467
123 Ga0450894_001150 3300042131 Bacteria 3960
124 Ga0450896_004371 3300042133 Bacteria 1915
125 Ga0450918_004006 3300042531 Bacteria 2706
126 Ga0453683_0110689 3300044673 Bacteria 1727
127 Ga0466966_0023849 3300044684 Bacteria 4004
128 Ga0453684_0012992 3300044712 Bacteria 13615
129 Ga0453684_0160100 3300044712 Bacteria 2664
130 Ga0453684_0277344 3300044712 Unclassified 1913
131 Ga0466960_0007710 3300044901 Bacteria 4386
132 Ga0451576_0054929 3300045051 Bacteria 4168
133 Ga0495653_0090924 3300046463 Bacteria 2232
134 Ga0495580_0043334 3300046472 Bacteria 3203
135 Ga0495674_0067105 3300047319 Bacteria 3109
136 Ga0495684_0037560 3300047471 Bacteria 3715
137 Ga0496102_0016485 3300048905 Bacteria 6458
138 Ga0496103_0031717 3300048906 Bacteria 3222
139 Ga0496104_0003087 3300048907 Bacteria 14352
140 Ga0496105_0003137 3300048908 Bacteria 12168
141 Ga0496108_0004490 3300048911 Bacteria 11236
142 Ga0496109_0020645 3300048912 Bacteria 5819
143 Ga0496110_0020037 3300048913 Bacteria 5639
144 Ga0496111_0001948 3300048914 Bacteria 12240
145 Ga0496112_0004985 3300048915 Bacteria 11383
146 Ga0496112_0015603 3300048915 Bacteria 7095
147 Ga0496113_0071948 3300048916 Bacteria 2631
148 Ga0496115_0007916 3300048918 Bacteria 7839
149 Ga0496115_0150299 3300048918 Bacteria 1923
150 Ga0496116_0000047 3300048919 Bacteria 315121
151 Ga0496119_0024948 3300048922 Bacteria 4188
152 Ga0496121_0006674 3300048924 Bacteria 14195
153 Ga0496122_0033372 3300048925 Bacteria 4235
154 Ga0496123_0051732 3300048926 Bacteria 2733
155 Ga0496125_0000050 3300048928 Bacteria 286703
156 Ga0496125_0083839 3300048928 Bacteria 2423
157 Ga0496126_0008241 3300048929 Bacteria 11256
158 Ga0496126_0172926 3300048929 Bacteria 1839
159 Ga0501031_0024021 3300049568 Bacteria 3975
160 Ga0501032_0030826 3300049569 Bacteria 3679
161 Ga0501036_0066073 3300049572 Bacteria 3060
162 Ga0501037_0113508 3300049573 Bacteria 1951
163 Ga0501039_0041515 3300049575 Bacteria 3554
164 Ga0501039_0153273 3300049575 Bacteria 1810
165 Ga0501039_0180102 3300049575 Bacteria 1662
166 Ga0501040_0057336 3300049576 Bacteria 2674
167 Ga0501041_0068150 3300049577 Bacteria 2181
168 Ga0501048_0026107 3300049582 Bacteria 4254
169 Ga0501071_0059938 3300049587 Bacteria 2754
170 Ga0501072_0169707 3300049588 Bacteria 1741
171 Ga0501075_0076406 3300049591 Bacteria 2533
172 Ga0501076_0023401 3300049592 Bacteria 4763
173 Ga0501076_0052354 3300049592 Bacteria 3234
174 Ga0501076_0082118 3300049592 Bacteria 2587
175 Ga0501077_0056586 3300049593 Bacteria 2490
176 Ga0501079_0054517 3300049741 Bacteria 3084
177 Ga0501079_0084137 3300049741 Bacteria 2461
178 Ga0501080_0052214 3300049742 Bacteria 3805
179 Ga0501080_0106855 3300049742 Bacteria 2594
180 Ga0501081_0006167 3300049743 Bacteria 7764
181 Ga0501045_0032073 3300049824 Bacteria 3806
182 Ga0501045_0090056 3300049824 Bacteria 2266
183 nmdc:mga09592_103877_c1 3300050508 Bacteria 2435
184 nmdc:mga08y16_408454_c1 3300050511 Bacteria 1389
185 nmdc:mga0n895_52545_c1 3300050512 Bacteria 4000
186 nmdc:mga08x19_16741_c1 3300050514 Bacteria 4476
187 nmdc:mga0a205_103288_c2 3300050515 Bacteria 2100
188 nmdc:mga0a205_67214_c1 3300050515 Bacteria 3462
189 nmdc:mga0sz30_16832_c1 3300050516 Bacteria 2908
190 Ga0500643_000516 3300053087 Bacteria 27378
191 Ga0500566_0016663 3300053094 Bacteria 4313
192 Ga0500595_000660 3300053119 Bacteria 20694
193 Ga0500618_005943 3300053125 Bacteria 3642
194 Ga0500559_0028686 3300053136 Bacteria 2379
195 Ga0500616_0000047 3300053153 Bacteria 322354
196 Ga0500637_0002886 3300053178 Bacteria 7753
197 Ga0500661_000474 3300055283 Bacteria 7443
198 2861694360 2861691609 Bacteria 5628931
199 2509149130 2508501128 Bacteria 8613869
200 2513659438 2513237096 Bacteria 8722461
201 2513860619 2513237137 Bacteria 9558895
202 2513894397 2513237141 Bacteria 8496279
203 2513919027 2513237145 Bacteria 8979722
204 2516206422 2516143018 Bacteria 6951533
205 2517888348 2517572143 Bacteria 9484767
206 2523467949 2523231067 Bacteria 5230452
207 2524539843 2524023228 Bacteria 10118060
208 2587863221 2585428094 Bacteria 3604039
209 2588106623 2585428157 Bacteria 3018951
210 2643754159 2643221546 Bacteria 2910897
211 2643769423 2643221549 Bacteria 4042819
212 2643874830 2643221572 Bacteria 3614809
213 2644114037 2643221619 Bacteria 4158469
214 2644277201 2643221649 Bacteria 3867359
215 2644381886 2643221669 Bacteria 3611286
216 2644744996 2643221736 Bacteria 6608466
217 2671123306 2667528175 Bacteria 7532676
218 2723642717 2721755702 Bacteria 4373124
219 2728750766 2728368998 Bacteria 8720350
220 2739349978 2738543031 Bacteria 5769731
221 2740033603 2739367866 Bacteria 4215900
222 2793067169 2791355197 Bacteria 8420563
223 2808902683 2808606372 Bacteria 4649509
224 2817415831 2816332280 Bacteria 5109718
225 2819424897 2818991318 Bacteria 5266538
226 2819690596 2818991462 Bacteria 4320267
227 2829750804 2829745981 Bacteria 5406054
228 2833710419 2833709550 Bacteria 4008291
229 2840678693 2840677318 Bacteria 2664183
230 2841765919 2841760612 Bacteria 6454112
231 2842205662 2842205361 Bacteria 6340321
232 2842279119 2842278818 Bacteria 6340002
233 2842699192 2842698319 Bacteria 5190321
234 2844107529 2844104063 Bacteria 6440972
235 2851249569 2851246043 Bacteria 6439203
236 2885380481 2885374607 Bacteria 8927485
237 2896086511 2896085136 Bacteria 6129793
238 2896113195 2896109856 Bacteria 7140722
239 2903753612 2903748898 Bacteria 9972761
240 2903896188 2903895155 Bacteria 5258610
241 2904692234 2904690495 Bacteria 9412302
242 2904707686
243 2906614295
244 2906641863 2906635258 Bacteria 8601019
245 2906666775 2906660503 Bacteria 8595048
246 2908746880 2908739725 Bacteria 8628932
247 2908756767 2908756301 Bacteria 8864324
248 2919443272 2919443155 Bacteria 4072969
249 2922426122
250 2935413112 2935409751 Bacteria 4179611
251 2935632520 2935630451 Bacteria 8169952
252 2941508816 2941507105 Bacteria 8166816
253 2941516646 2941515067 Bacteria 8166720
254 2941524338 2941523033 Bacteria 8169134
255 2958460869 2958458903 Bacteria 5301041
256 2966923951 2966921586 Bacteria 3092803
257 2977253528 2977251589 Bacteria 2952848
258 3005483420 3005474847 Bacteria 9259049
259 8002747422 8002745576 Bacteria 4840272
260 8005293456 8005289223 Bacteria 6634003
261 8006936831 8006933436 Bacteria 10410654
262 8006976801 8006973647 Bacteria 10679141
263 8019561864 8019555841 Bacteria 9642137
264 8019571940 8019565922 Bacteria 9639779
265 8046355966 8046352972 Bacteria 3613806
266 8056692630 8056689827 Bacteria 6712655
267 SwRhRL2b_contig_2307802
268 Ga0070683_100000133
269 Ga0070670_100011025
270 Ga0070666_10001556
271 Ga0070691_10000568
272 Ga0070692_10016448
273 Ga0070688_100039262
274 Ga0070709_10001753
275 Ga0070714_100006751
276 Ga0070710_10002982
277 Ga0070694_100000391
278 Ga0070681_10283471
279 Ga0070706_100003193
280 Ga0070706_100004960
281 Ga0070707_100010585
282 Ga0070698_100091318
283 Ga0070684_100000092
284 Ga0070697_100000090
285 Ga0070696_100016833
286 Ga0070696_100055074
287 Ga0070704_100002756
288 Ga0070664_100004299
289 Ga0068857_100000059
290 Ga0068856_100004667
291 Ga0075365_10014288
292 Ga0070716_100007891
293 Ga0070712_100104068
294 Ga0075369_10003014
295 Ga0075428_100036945
296 Ga0075430_100054325
297 Ga0075430_100172676
298 Ga0075431_100158695
299 Ga0075433_10211873
300 Ga0075429_100053589
301 Ga0075436_100058486
302 Ga0079104_1000179
303 Ga0105240_10000009
304 Ga0111539_10121037
305 Ga0114129_10019849
306 Ga0105237_10000140
307 Ga0105237_10173243
308 Ga0105238_10071292
309 Ga0105238_10252131
310 Ga0105239_10033611
311 Ga0157373_10000002
312 Ga0157371_10101121
313 Ga0157370_10000136
314 Ga0157369_10000621
315 Ga0157369_10001631
316 Ga0157378_10033152
317 Ga0157375_10184149
318 Ga0163163_10007591
319 Ga0157380_10011659
320 Ga0213874_10012744
321 Ga0209233_1015038
322 Ga0209455_1003863
323 Ga0207692_10001864
324 Ga0207680_10000569
325 Ga0207647_10080753
326 Ga0207699_10000519
327 Ga0207684_10004096
328 Ga0207684_10075956
329 Ga0207695_10000038
330 Ga0207671_10000004
331 Ga0207693_10005522
332 Ga0207663_10001163
333 Ga0207646_10013318
334 Ga0207694_10139053
335 Ga0207700_10000275
336 Ga0207700_10087719
337 Ga0207665_10001352
338 Ga0207661_10000389
339 Ga0207702_10004314
340 Ga0207674_10000152
341 Ga0209281_1000116
342 Ga0209589_1000015
343 Ga0209489_100015
344 Ga0209700_100025
345 Ga0265338_10000354
346 Ga0265338_10097116
347 Ga0265330_10001195
348 Ga0265330_10033907
349 Ga0265325_10059211
350 Ga0265327_10000038
351 Ga0265327_10004697
352 Ga0265316_10016311
353 Ga0265316_10057303
354 Ga0307508_10003931
355 Ga0316575_10006442
356 Ga0316576_10055071
357 Ga0316576_10113021
358 Ga0307405_10068759
359 Ga0307409_100148737
360 Ga0307416_100030422
361 Ga0307411_10094755
362 Ga0315911_1000047
363 Ga0373951_0000875
364 Ga0316574_0035270
365 Ga0373927_0039842
366 Ga0373947_0020149
367 Ga0373937_0069345
368 Ga0395905_0000221
369 Ga0395905_0000596
370 Ga0395905_0003330
371 Ga0395905_0025187
372 Ga0395905_0112689
373 Ga0436364_0243659
374 Ga0436364_0393163
375 Ga0436364_1323747
376 Ga0436365_0147566
377 Ga0436365_0399554
378 Ga0436365_1914043
379 Ga0436361_0788280
380 Ga0436361_1076339
381 Ga0436363_0198704
382 Ga0436363_1068861
383 Ga0436362_0029274
384 Ga0436362_1247210
385 Ga0439439_0018977
386 Ga0439461_0001630
387 Ga0439457_009231
388 Ga0450920_004428
389 Ga0450894_001150
390 Ga0450896_004371
391 Ga0450918_004006
392 Ga0453683_0110689
393 Ga0466966_0023849
394 Ga0453684_0012992
395 Ga0453684_0160100
396 Ga0453684_0277344
397 Ga0466960_0007710
398 Ga0451576_0054929
399 Ga0495653_0090924
400 Ga0495580_0043334
401 Ga0495674_0067105
402 Ga0495684_0037560
403 Ga0496102_0016485
404 Ga0496103_0031717
405 Ga0496104_0003087
406 Ga0496105_0003137
407 Ga0496108_0004490
408 Ga0496109_0020645
409 Ga0496110_0020037
410 Ga0496111_0001948
411 Ga0496112_0004985
412 Ga0496112_0015603
413 Ga0496113_0071948
414 Ga0496115_0007916
415 Ga0496115_0150299
416 Ga0496116_0000047
417 Ga0496119_0024948
418 Ga0496121_0006674
419 Ga0496122_0033372
420 Ga0496123_0051732
421 Ga0496125_0000050
422 Ga0496125_0083839
423 Ga0496126_0008241
424 Ga0496126_0172926
425 Ga0501031_0024021
426 Ga0501032_0030826
427 Ga0501036_0066073
428 Ga0501037_0113508
429 Ga0501039_0041515
430 Ga0501039_0153273
431 Ga0501039_0180102
432 Ga0501040_0057336
433 Ga0501041_0068150
434 Ga0501048_0026107
435 Ga0501071_0059938
436 Ga0501072_0169707
437 Ga0501075_0076406
438 Ga0501076_0023401
439 Ga0501076_0052354
440 Ga0501076_0082118
441 Ga0501077_0056586
442 Ga0501079_0054517
443 Ga0501079_0084137
444 Ga0501080_0052214
445 Ga0501080_0106855
446 Ga0501081_0006167
447 Ga0501045_0032073
448 Ga0501045_0090056
449 nmdc:mga09592_103877_c1
450 nmdc:mga08y16_408454_c1
451 nmdc:mga0n895_52545_c1
452 nmdc:mga08x19_16741_c1
453 nmdc:mga0a205_103288_c2
454 nmdc:mga0a205_67214_c1
455 nmdc:mga0sz30_16832_c1
456 Ga0500643_000516
457 Ga0500566_0016663
458 Ga0500595_000660
459 Ga0500618_005943
460 Ga0500559_0028686
461 Ga0500616_0000047
462 Ga0500637_0002886
463 Ga0500661_000474
464 2861694360
465 2509149130
466 2513659438
467 2513860619
468 2513894397
469 2513919027
470 2516206422
471 2517888348
472 2523467949
473 2524539843
474 2587863221
475 2588106623
476 2643754159
477 2643769423
478 2643874830
479 2644114037
480 2644277201
481 2644381886
482 2644744996
483 2671123306
484 2723642717
485 2728750766
486 2739349978
487 2740033603
488 2793067169
489 2808902683
490 2817415831
491 2819424897
492 2819690596
493 2829750804
494 2833710419
495 2840678693
496 2841765919
497 2842205662
498 2842279119
499 2842699192
500 2844107529
501 2851249569
502 2885380481
503 2896086511
504 2896113195
505 2903753612
506 2903896188
507 2904692234
508 2904707686
509 2906614295
510 2906641863
511 2906666775
512 2908746880
513 2908756767
514 2919443272
515 2922426122
516 2935413112
517 2935632520
518 2941508816
519 2941516646
520 2941524338
521 2958460869
522 2966923951
523 2977253528
524 3005483420
525 8002747422
526 8005293456
527 8006936831
528 8006976801
529 8019561864
530 8019571940
531 8046355966
532 8056692630

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10415

FumaraseC_C

Fumarase C C-terminus

488

541

0.99

PF00206

Lyase_1

Lyase

90

422

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
3r6y-assembly1.cif.gz_C crystal structure of chymotrypsin-treated aspartase from bacillus sp. ym55-1 0.973 4 394
3oce-assembly1.cif.gz_B crystal structure of fumarate lyase:delta crystallin from brucella melitensis bound to cobalt 0.9715 2 463
3ocf-assembly1.cif.gz_C crystal structure of fumarate lyase:delta crystallin from brucella melitensis in native form 0.9703 4 442
3ocf-assembly1.cif.gz_D crystal structure of fumarate lyase:delta crystallin from brucella melitensis in native form 0.9702 1 440
1jsw-assembly1.cif.gz_C native l-aspartate ammonia lyase 0.9695 4 414
ID Description Score Start End Superfamily
af_P0AC38_6_142_1.10.275.10 Mainly Alpha;Orthogonal Bundle;Fumarase C; Chain B, domain 1;Fumarase/aspartase (N-terminal domain) 0.9913 4 136 1.10.275.10
3r6yC02 Mainly Alpha;Up-down Bundle;Fumarase C; Chain A, domain 2;Fumarase/aspartase (Central domain) 0.9763 140 394 1.20.200.10
3ocfB02 Mainly Alpha;Up-down Bundle;Fumarase C; Chain A, domain 2;Fumarase/aspartase (Central domain) 0.9734 140 405 1.20.200.10
3r6yC02 Mainly Alpha;Up-down Bundle;Fumarase C; Chain A, domain 2;Fumarase/aspartase (Central domain) 0.9725 140 394 1.20.200.10
af_P9WN93_11_137_1.10.275.10 Mainly Alpha;Orthogonal Bundle;Fumarase C; Chain B, domain 1;Fumarase/aspartase (N-terminal domain) 0.9689 4 139 1.10.275.10
ID Description Score Start End GO Terms
AF-A0A4R7AJ33-F1-model_v4 deleted 0.9973 37 152
AF-A0A828KF19-F1-model_v4 deleted 0.9958 2 110
AF-A0A6I5JDV2-F1-model_v4 deleted 0.9953 46 148
AF-A0A2N1VAN4-F1-model_v4 Aspartate ammonia-lyase 0.9951 3 140 GO:0005829
GO:0006531
GO:0008797
AF-A0A6G3C9A8-F1-model_v4 Aspartate ammonia-lyase (EC 4.3.1.1) 0.9944 2 140 GO:0005829
GO:0006531
GO:0008797

Map