F367672

General Info

Members Datasets Scaffolds Average Seq Length
257 166 514 293

Family's Representative Sequence

Representative Sequence 3300050512|nmdc:mga0n895_274909_c1|nmdc:mga0n895_274909_c1_675_1673
Length 332
Sequence LITHPDKVLFPDDGITKGELAAYYEMIAPVMLPHIRGRPITMERFHRGIGEKGFFQKDVVKGFPEWLERVEVQKKGGTVHHPIVTDTRSLVWLANQNSITPHVWIARVPDLWHPDICVFDLDPSEEQSEILSAAGIALRDLLSELGLESWVKTSGSKGFHVVVPLDGSADYGDVGRFANAAGALLVRRYPEHLTQEFNKADRGGRILVDTGRNAYHATFAAVYSVRAKPGAPVSAPCRWDEIKNGTGPRSFLLRGMADRVSTAGDLWSEMLFRGQTLRPAIERLRRLQTLNRARGFQRLPARPCAYTLNSHGLLPVVSGARVHVRVGRFPAM

Samples

Sample ID Description Type Environment
1 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
2 3300000532 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled Metagenome Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
12 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
13 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
14 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
15 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
16 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
17 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
18 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
19 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
20 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
21 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
22 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
23 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
24 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
25 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
26 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
27 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
28 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
29 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
30 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
31 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
32 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
33 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
34 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
35 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
36 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
37 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
38 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
39 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
40 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
41 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
42 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
43 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
44 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
45 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
46 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
47 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
48 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
49 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
50 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
51 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
52 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
53 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
54 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
55 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
56 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
57 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
58 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
59 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
60 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
61 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
62 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
63 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
64 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
65 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
66 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
67 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
68 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
69 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
70 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
71 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
72 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
73 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
74 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
75 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
76 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
77 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
78 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
79 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
115 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
116 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
117 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
119 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
120 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
121 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
122 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
123 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
124 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
125 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
126 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
127 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
128 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
129 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
130 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
131 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
132 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
133 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
134 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
135 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
136 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
137 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
138 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
139 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
140 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
141 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
142 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
143 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
144 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
145 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
146 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
147 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
148 3300049654 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_A_0_control Metagenome Rhizosphere
149 3300049660 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_B_0_control Metagenome Rhizosphere
150 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
151 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
152 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
153 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
154 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
155 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
156 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
157 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
158 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
159 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
160 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
161 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
162 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
163 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
164 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
165 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
166 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.78
Nodule 0
Rhizoplane 2.33
Rhizosphere 96.5
Stem 0
Stem Tuber 0
Unclassified 19.84

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 nmdc:mga0n895_274909_c1 3300050512 Unclassified 1708
2 CNAas_1000571 3300000532 Unclassified 3559
3 Ga0065704_10106143 3300005289 Unclassified 2091
4 Ga0065715_10134509 3300005293 Bacteria 1946
5 Ga0065707_10202464 3300005295 Bacteria 1269
6 Ga0070683_100000024 3300005329 Bacteria 173376
7 Ga0070683_100032449 3300005329 Bacteria 4756
8 Ga0070690_100167962 3300005330 Unclassified 1508
9 Ga0070670_100240249 3300005331 Bacteria 1577
10 Ga0070670_100320568 3300005331 Bacteria 1358
11 Ga0068869_100099968 3300005334 Bacteria 2193
12 Ga0070680_100001080 3300005336 Bacteria 19582
13 Ga0070680_100029004 3300005336 Unclassified 4443
14 Ga0070689_100160425 3300005340 Bacteria 1817
15 Ga0070692_10075405 3300005345 Bacteria 1806
16 Ga0070669_100000733 3300005353 Bacteria 23920
17 Ga0070675_100000952 3300005354 Bacteria 20655
18 Ga0070671_100027551 3300005355 Bacteria 4678
19 Ga0070673_100154084 3300005364 Bacteria 1949
20 Ga0070688_100037970 3300005365 Bacteria 2938
21 Ga0070688_100053458 3300005365 Bacteria 2526
22 Ga0070701_10031338 3300005438 Bacteria 2638
23 Ga0070701_10061976 3300005438 Bacteria 1974
24 Ga0070705_100010268 3300005440 Bacteria 4681
25 Ga0070705_100067182 3300005440 Bacteria 2153
26 Ga0070705_100295586 3300005440 Unclassified 1158
27 Ga0070694_100131713 3300005444 Bacteria 1807
28 Ga0070694_100290544 3300005444 Unclassified 1249
29 Ga0070694_100435799 3300005444 Unclassified 1032
30 Ga0070694_100460966 3300005444 Bacteria 1005
31 Ga0070678_100059706 3300005456 Unclassified 2804
32 Ga0070681_10002053 3300005458 Bacteria 18262
33 Ga0068867_100163171 3300005459 Bacteria 1758
34 Ga0068867_100472879 3300005459 Unclassified 1072
35 Ga0070685_10058558 3300005466 Unclassified 2246
36 Ga0070706_100458425 3300005467 Bacteria 1186
37 Ga0070698_100248407 3300005471 Bacteria 1712
38 Ga0070698_100315111 3300005471 Bacteria 1495
39 Ga0070699_100025203 3300005518 Bacteria 5129
40 Ga0070679_100000502 3300005530 Bacteria 33348
41 Ga0070684_100000023 3300005535 Bacteria 127415
42 Ga0070697_100214346 3300005536 Unclassified 1640
43 Ga0068853_100086253 3300005539 Bacteria 2752
44 Ga0070695_100003346 3300005545 Bacteria 9366
45 Ga0070695_100159803 3300005545 Bacteria 1581
46 Ga0070696_100016406 3300005546 Bacteria 4987
47 Ga0070696_100171306 3300005546 Bacteria 1605
48 Ga0070696_100258480 3300005546 Bacteria 1320
49 Ga0070693_100045736 3300005547 Bacteria 2482
50 Ga0070665_100001926 3300005548 Bacteria 23413
51 Ga0070704_100002088 3300005549 Bacteria 11109
52 Ga0070704_100039691 3300005549 Bacteria 3234
53 Ga0070664_100284635 3300005564 Bacteria 1491
54 Ga0068854_100140165 3300005578 Bacteria 1855
55 Ga0068856_100075381 3300005614 Bacteria 3341
56 Ga0070702_100011421 3300005615 Bacteria 4418
57 Ga0068852_100416182 3300005616 Bacteria 1325
58 Ga0068859_100003410 3300005617 Bacteria 16165
59 Ga0068859_100034570 3300005617 Bacteria 5072
60 Ga0068859_100056571 3300005617 Bacteria 3949
61 Ga0068859_100057853 3300005617 Bacteria 3905
62 Ga0068859_100087768 3300005617 Bacteria 3159
63 Ga0068859_100088915 3300005617 Bacteria 3138
64 Ga0068859_100098054 3300005617 Unclassified 2985
65 Ga0068859_100829480 3300005617 Bacteria 1011
66 Ga0068864_100107966 3300005618 Bacteria 2476
67 Ga0068864_100142288 3300005618 Unclassified 2165
68 Ga0068864_100200636 3300005618 Bacteria 1832
69 Ga0068861_100006992 3300005719 Bacteria 7711
70 Ga0068858_100039338 3300005842 Bacteria 4385
71 Ga0068858_100217730 3300005842 Bacteria 1808
72 Ga0075364_10096995 3300006051 Bacteria 1961
73 Ga0070716_100021002 3300006173 Bacteria 3435
74 Ga0068871_100160233 3300006358 Bacteria 1924
75 Ga0075428_100050062 3300006844 Unclassified 4582
76 Ga0075428_100074187 3300006844 Bacteria 3716
77 Ga0075428_100149788 3300006844 Unclassified 2535
78 Ga0075430_100026167 3300006846 Bacteria 4965
79 Ga0075431_100003444 3300006847 Bacteria 15352
80 Ga0075431_100037264 3300006847 Bacteria 5011
81 Ga0075431_100054735 3300006847 Bacteria 4114
82 Ga0075431_100114234 3300006847 Unclassified 2787
83 Ga0075433_10123657 3300006852 Bacteria 2299
84 Ga0075433_10184768 3300006852 Bacteria 1854
85 Ga0075433_10346233 3300006852 Bacteria 1314
86 Ga0075434_100191365 3300006871 Bacteria 2066
87 Ga0075434_100245289 3300006871 Bacteria 1811
88 Ga0075434_100325122 3300006871 Unclassified 1558
89 Ga0075434_100339906 3300006871 Bacteria 1522
90 Ga0075429_100172281 3300006880 Bacteria 1896
91 Ga0097620_100003410 3300006931 Bacteria 16165
92 Ga0097620_100034570 3300006931 Bacteria 5072
93 Ga0097620_100056571 3300006931 Bacteria 3949
94 Ga0097620_100057852 3300006931 Bacteria 3905
95 Ga0097620_100087768 3300006931 Bacteria 3159
96 Ga0097620_100088915 3300006931 Bacteria 3138
97 Ga0097620_100098055 3300006931 Unclassified 2985
98 Ga0097620_100829531 3300006931 Bacteria 1011
99 Ga0075435_100183567 3300007076 Bacteria 1768
100 Ga0075435_100235525 3300007076 Bacteria 1556
101 Ga0105240_10086846 3300009093 Bacteria 3831
102 Ga0105240_10112906 3300009093 Bacteria 3284
103 Ga0111539_10004156 3300009094 Bacteria 18976
104 Ga0111539_10008088 3300009094 Bacteria 13403
105 Ga0111539_10049912 3300009094 Bacteria 4987
106 Ga0111539_10078923 3300009094 Bacteria 3871
107 Ga0111539_10093646 3300009094 Unclassified 3529
108 Ga0111539_10141077 3300009094 Unclassified 2821
109 Ga0111539_10225456 3300009094 Unclassified 2183
110 Ga0111539_10310945 3300009094 Bacteria 1834
111 Ga0111539_10393896 3300009094 Viruses 1613
112 Ga0111539_10577052 3300009094 Bacteria 1310
113 Ga0105247_10015744 3300009101 Bacteria 4528
114 Ga0105247_10070368 3300009101 Bacteria 2185
115 Ga0114129_10035636 3300009147 Bacteria 7029
116 Ga0114129_10037470 3300009147 Bacteria 6845
117 Ga0114129_10141909 3300009147 Bacteria 3292
118 Ga0114129_10179012 3300009147 Unclassified 2887
119 Ga0114129_10300676 3300009147 Bacteria 2139
120 Ga0114129_10353222 3300009147 Bacteria 1947
121 Ga0114129_10569506 3300009147 Unclassified 1471
122 Ga0105243_10005789 3300009148 Bacteria 9594
123 Ga0105241_10579092 3300009174 Bacteria 1011
124 Ga0105248_10155287 3300009177 Bacteria 2582
125 Ga0105248_10610308 3300009177 Unclassified 1231
126 Ga0105237_10106844 3300009545 Bacteria 2791
127 Ga0105238_10032972 3300009551 Bacteria 5271
128 Ga0105249_10039357 3300009553 Unclassified 4292
129 Ga0105239_10687978 3300010375 Bacteria 1169
130 Ga0105246_10108194 3300011119 Bacteria 2037
131 Ga0105246_10241017 3300011119 Bacteria 1429
132 Ga0157373_10007941 3300013100 Bacteria 7890
133 Ga0157378_10054840 3300013297 Bacteria 3550
134 Ga0163162_10307752 3300013306 Unclassified 1717
135 Ga0157372_10051465 3300013307 Unclassified 4584
136 Ga0157375_10826862 3300013308 Unclassified 1074
137 Ga0163163_10027829 3300014325 Bacteria 5421
138 Ga0163163_10231172 3300014325 Bacteria 1898
139 Ga0157380_10077157 3300014326 Bacteria 2714
140 Ga0157380_10077235 3300014326 Bacteria 2713
141 Ga0157380_10120541 3300014326 Bacteria 2221
142 Ga0157377_10112787 3300014745 Bacteria 1636
143 Ga0157379_10400198 3300014968 Bacteria 1262
144 Ga0157376_10036835 3300014969 Bacteria 3965
145 Ga0157376_10412017 3300014969 Bacteria 1309
146 Ga0207682_10019897 3300025893 Bacteria 2632
147 Ga0207710_10125686 3300025900 Bacteria 1228
148 Ga0207688_10223036 3300025901 Bacteria 1136
149 Ga0207647_10099406 3300025904 Bacteria 1728
150 Ga0207645_10005066 3300025907 Bacteria 9652
151 Ga0207684_10109860 3300025910 Unclassified 2360
152 Ga0207684_10150733 3300025910 Unclassified 2001
153 Ga0207707_10000004 3300025912 Bacteria 391281
154 Ga0207695_10158120 3300025913 Bacteria 2200
155 Ga0207695_10365429 3300025913 Unclassified 1329
156 Ga0207671_10167900 3300025914 Bacteria 1702
157 Ga0207660_10124479 3300025917 Bacteria 1956
158 Ga0207662_10123457 3300025918 Bacteria 1626
159 Ga0207652_10014729 3300025921 Bacteria 6338
160 Ga0207646_10328975 3300025922 Unclassified 1380
161 Ga0207681_10037511 3300025923 Bacteria 3204
162 Ga0207659_10000309 3300025926 Bacteria 29575
163 Ga0207659_10066043 3300025926 Unclassified 2624
164 Ga0207659_10424646 3300025926 Bacteria 1115
165 Ga0207644_10085395 3300025931 Bacteria 2341
166 Ga0207709_10055181 3300025935 Bacteria 2453
167 Ga0207670_10066063 3300025936 Bacteria 2484
168 Ga0207670_10073446 3300025936 Bacteria 2372
169 Ga0207704_10147876 3300025938 Bacteria 1653
170 Ga0207665_10141542 3300025939 Bacteria 1716
171 Ga0207691_10079166 3300025940 Unclassified 2958
172 Ga0207711_10331991 3300025941 Bacteria 1406
173 Ga0207689_10048063 3300025942 Bacteria 3520
174 Ga0207661_10000038 3300025944 Bacteria 136281
175 Ga0207679_10171451 3300025945 Unclassified 1787
176 Ga0207651_10507915 3300025960 Bacteria 1043
177 Ga0207712_10035356 3300025961 Unclassified 3393
178 Ga0207703_10112624 3300026035 Bacteria 2325
179 Ga0207639_10181981 3300026041 Bacteria 1788
180 Ga0207678_10394340 3300026067 Unclassified 1198
181 Ga0207708_10006690 3300026075 Bacteria 8525
182 Ga0207708_10212194 3300026075 Bacteria 1548
183 Ga0207702_10230044 3300026078 Bacteria 1732
184 Ga0207648_10202948 3300026089 Bacteria 1759
185 Ga0207675_100000746 3300026118 Bacteria 32344
186 Ga0207683_10043833 3300026121 Bacteria 3910
187 Ga0209971_1011213 3300027682 Bacteria 2123
188 Ga0207428_10014440 3300027907 Bacteria 6863
189 Ga0207428_10028052 3300027907 Bacteria 4680
190 Ga0268266_10120398 3300028379 Bacteria 2335
191 Ga0268264_10531113 3300028381 Bacteria 1151
192 Ga0307413_10313395 3300031824 Bacteria 1195
193 Ga0307406_10075457 3300031901 Bacteria 2224
194 Ga0307409_100229516 3300031995 Unclassified 1682
195 Ga0307409_100573977 3300031995 Bacteria 1111
196 Ga0307416_100121249 3300032002 Bacteria 2331
197 Ga0307414_10085933 3300032004 Bacteria 2319
198 Ga0307415_100038145 3300032126 Unclassified 3164
199 Ga0373949_0036291 3300035090 Unclassified 1195
200 Ga0373925_0347594 3300037068 Unclassified 1204
201 Ga0395901_0505364 3300038443 Bacteria 1230
202 Ga0451853_0026758 3300041512 Bacteria 8280
203 Ga0439449_0081282 3300042007 Bacteria 1195
204 Ga0451577_0160149 3300042876 Bacteria 2026
205 Ga0451576_0610837 3300045051 Unclassified 1146
206 Ga0495629_0046399 3300046459 Bacteria 3048
207 Ga0495580_0005171 3300046472 Bacteria 10850
208 Ga0495582_0016657 3300046473 Bacteria 4025
209 Ga0495665_0059521 3300046531 Bacteria 2016
210 Ga0495665_0266284 3300046531 Unclassified 881
211 Ga0495640_0233599 3300046533 Unclassified 1156
212 Ga0495621_0113827 3300046539 Bacteria 1040
213 Ga0495635_0155662 3300046663 Unclassified 1556
214 Ga0496106_0059223 3300048909 Bacteria 2901
215 Ga0496109_0216538 3300048912 Bacteria 1801
216 Ga0496109_0315686 3300048912 Bacteria 1475
217 Ga0496111_0324198 3300048914 Bacteria 1141
218 Ga0496112_0231707 3300048915 Bacteria 1801
219 Ga0496115_0309327 3300048918 Bacteria 1294
220 Ga0501048_0110845 3300049582 Bacteria 1938
221 Ga0501076_0365903 3300049592 Bacteria 1185
222 Ga0501077_0075820 3300049593 Bacteria 2130
223 Ga0501198_013094 3300049649 Bacteria 1252
224 Ga0501202_015300 3300049652 Bacteria 1477
225 Ga0501207_009893 3300049654 Bacteria 1399
226 Ga0501216_003022 3300049660 Bacteria 2430
227 Ga0501223_016852 3300049663 Bacteria 1443
228 Ga0501233_014847 3300049668 Bacteria 1596
229 Ga0501225_0002903 3300049705 Bacteria 5262
230 Ga0501234_003515 3300049707 Bacteria 2464
231 nmdc:mga05p37_258545_c1 3300050507 Bacteria 2085
232 nmdc:mga05p37_274771_c1 3300050507 Bacteria 2012
233 nmdc:mga05p37_479124_c1 3300050507 Bacteria 1434
234 nmdc:mga05p37_535557_c1 3300050507 Bacteria 1336
235 nmdc:mga05p37_754747_c1 3300050507 Unclassified 1072
236 nmdc:mga05p37_96936_c1 3300050507 Bacteria 3633
237 nmdc:mga09592_39169_c1 3300050508 Bacteria 3980
238 nmdc:mga09592_634922_c1 3300050508 Bacteria 913
239 nmdc:mga0qj67_215105_c1 3300050509 Bacteria 1560
240 nmdc:mga06r32_54491_c1 3300050510 Unclassified 3835
241 nmdc:mga06r32_73638_c1 3300050510 Bacteria 3309
242 nmdc:mga08y16_182029_c1 3300050511 Bacteria 2182
243 nmdc:mga08y16_222503_c1 3300050511 Unclassified 1954
244 nmdc:mga08y16_51368_c1 3300050511 Bacteria 4314
245 nmdc:mga08y16_9609_c1 3300050511 Bacteria 10154
246 nmdc:mga0n895_230169_c1 3300050512 Bacteria 1881
247 nmdc:mga0n895_234046_c1 3300050512 Bacteria 1864
248 nmdc:mga0rr50_171827_c1 3300050513 Bacteria 1766
249 nmdc:mga0a205_296589_c1 3300050515 Bacteria 1490
250 nmdc:mga0a205_559589_c1 3300050515 Unclassified 998
251 Ga0500555_000137 3300053103 Bacteria 34688
252 Ga0590071_003604 3300059421 Bacteria 3801
253 Ga0590075_002611 3300059424 Bacteria 4303
254 Ga0590077_001258 3300059426 Bacteria 6066
255 Ga0501082_0001074 3300060353 Bacteria 24194
256 Ga0530510_0089198 3300061734 Bacteria 2248
257 Ga0530510_0214229 3300061734 Unclassified 1431
258 nmdc:mga0n895_274909_c1
259 CNAas_1000571
260 Ga0065704_10106143
261 Ga0065715_10134509
262 Ga0065707_10202464
263 Ga0070683_100000024
264 Ga0070683_100032449
265 Ga0070690_100167962
266 Ga0070670_100240249
267 Ga0070670_100320568
268 Ga0068869_100099968
269 Ga0070680_100001080
270 Ga0070680_100029004
271 Ga0070689_100160425
272 Ga0070692_10075405
273 Ga0070669_100000733
274 Ga0070675_100000952
275 Ga0070671_100027551
276 Ga0070673_100154084
277 Ga0070688_100037970
278 Ga0070688_100053458
279 Ga0070701_10031338
280 Ga0070701_10061976
281 Ga0070705_100010268
282 Ga0070705_100067182
283 Ga0070705_100295586
284 Ga0070694_100131713
285 Ga0070694_100290544
286 Ga0070694_100435799
287 Ga0070694_100460966
288 Ga0070678_100059706
289 Ga0070681_10002053
290 Ga0068867_100163171
291 Ga0068867_100472879
292 Ga0070685_10058558
293 Ga0070706_100458425
294 Ga0070698_100248407
295 Ga0070698_100315111
296 Ga0070699_100025203
297 Ga0070679_100000502
298 Ga0070684_100000023
299 Ga0070697_100214346
300 Ga0068853_100086253
301 Ga0070695_100003346
302 Ga0070695_100159803
303 Ga0070696_100016406
304 Ga0070696_100171306
305 Ga0070696_100258480
306 Ga0070693_100045736
307 Ga0070665_100001926
308 Ga0070704_100002088
309 Ga0070704_100039691
310 Ga0070664_100284635
311 Ga0068854_100140165
312 Ga0068856_100075381
313 Ga0070702_100011421
314 Ga0068852_100416182
315 Ga0068859_100003410
316 Ga0068859_100034570
317 Ga0068859_100056571
318 Ga0068859_100057853
319 Ga0068859_100087768
320 Ga0068859_100088915
321 Ga0068859_100098054
322 Ga0068859_100829480
323 Ga0068864_100107966
324 Ga0068864_100142288
325 Ga0068864_100200636
326 Ga0068861_100006992
327 Ga0068858_100039338
328 Ga0068858_100217730
329 Ga0075364_10096995
330 Ga0070716_100021002
331 Ga0068871_100160233
332 Ga0075428_100050062
333 Ga0075428_100074187
334 Ga0075428_100149788
335 Ga0075430_100026167
336 Ga0075431_100003444
337 Ga0075431_100037264
338 Ga0075431_100054735
339 Ga0075431_100114234
340 Ga0075433_10123657
341 Ga0075433_10184768
342 Ga0075433_10346233
343 Ga0075434_100191365
344 Ga0075434_100245289
345 Ga0075434_100325122
346 Ga0075434_100339906
347 Ga0075429_100172281
348 Ga0097620_100003410
349 Ga0097620_100034570
350 Ga0097620_100056571
351 Ga0097620_100057852
352 Ga0097620_100087768
353 Ga0097620_100088915
354 Ga0097620_100098055
355 Ga0097620_100829531
356 Ga0075435_100183567
357 Ga0075435_100235525
358 Ga0105240_10086846
359 Ga0105240_10112906
360 Ga0111539_10004156
361 Ga0111539_10008088
362 Ga0111539_10049912
363 Ga0111539_10078923
364 Ga0111539_10093646
365 Ga0111539_10141077
366 Ga0111539_10225456
367 Ga0111539_10310945
368 Ga0111539_10393896
369 Ga0111539_10577052
370 Ga0105247_10015744
371 Ga0105247_10070368
372 Ga0114129_10035636
373 Ga0114129_10037470
374 Ga0114129_10141909
375 Ga0114129_10179012
376 Ga0114129_10300676
377 Ga0114129_10353222
378 Ga0114129_10569506
379 Ga0105243_10005789
380 Ga0105241_10579092
381 Ga0105248_10155287
382 Ga0105248_10610308
383 Ga0105237_10106844
384 Ga0105238_10032972
385 Ga0105249_10039357
386 Ga0105239_10687978
387 Ga0105246_10108194
388 Ga0105246_10241017
389 Ga0157373_10007941
390 Ga0157378_10054840
391 Ga0163162_10307752
392 Ga0157372_10051465
393 Ga0157375_10826862
394 Ga0163163_10027829
395 Ga0163163_10231172
396 Ga0157380_10077157
397 Ga0157380_10077235
398 Ga0157380_10120541
399 Ga0157377_10112787
400 Ga0157379_10400198
401 Ga0157376_10036835
402 Ga0157376_10412017
403 Ga0207682_10019897
404 Ga0207710_10125686
405 Ga0207688_10223036
406 Ga0207647_10099406
407 Ga0207645_10005066
408 Ga0207684_10109860
409 Ga0207684_10150733
410 Ga0207707_10000004
411 Ga0207695_10158120
412 Ga0207695_10365429
413 Ga0207671_10167900
414 Ga0207660_10124479
415 Ga0207662_10123457
416 Ga0207652_10014729
417 Ga0207646_10328975
418 Ga0207681_10037511
419 Ga0207659_10000309
420 Ga0207659_10066043
421 Ga0207659_10424646
422 Ga0207644_10085395
423 Ga0207709_10055181
424 Ga0207670_10066063
425 Ga0207670_10073446
426 Ga0207704_10147876
427 Ga0207665_10141542
428 Ga0207691_10079166
429 Ga0207711_10331991
430 Ga0207689_10048063
431 Ga0207661_10000038
432 Ga0207679_10171451
433 Ga0207651_10507915
434 Ga0207712_10035356
435 Ga0207703_10112624
436 Ga0207639_10181981
437 Ga0207678_10394340
438 Ga0207708_10006690
439 Ga0207708_10212194
440 Ga0207702_10230044
441 Ga0207648_10202948
442 Ga0207675_100000746
443 Ga0207683_10043833
444 Ga0209971_1011213
445 Ga0207428_10014440
446 Ga0207428_10028052
447 Ga0268266_10120398
448 Ga0268264_10531113
449 Ga0307413_10313395
450 Ga0307406_10075457
451 Ga0307409_100229516
452 Ga0307409_100573977
453 Ga0307416_100121249
454 Ga0307414_10085933
455 Ga0307415_100038145
456 Ga0373949_0036291
457 Ga0373925_0347594
458 Ga0395901_0505364
459 Ga0451853_0026758
460 Ga0439449_0081282
461 Ga0451577_0160149
462 Ga0451576_0610837
463 Ga0495629_0046399
464 Ga0495580_0005171
465 Ga0495582_0016657
466 Ga0495665_0059521
467 Ga0495665_0266284
468 Ga0495640_0233599
469 Ga0495621_0113827
470 Ga0495635_0155662
471 Ga0496106_0059223
472 Ga0496109_0216538
473 Ga0496109_0315686
474 Ga0496111_0324198
475 Ga0496112_0231707
476 Ga0496115_0309327
477 Ga0501048_0110845
478 Ga0501076_0365903
479 Ga0501077_0075820
480 Ga0501198_013094
481 Ga0501202_015300
482 Ga0501207_009893
483 Ga0501216_003022
484 Ga0501223_016852
485 Ga0501233_014847
486 Ga0501225_0002903
487 Ga0501234_003515
488 nmdc:mga05p37_258545_c1
489 nmdc:mga05p37_274771_c1
490 nmdc:mga05p37_479124_c1
491 nmdc:mga05p37_535557_c1
492 nmdc:mga05p37_754747_c1
493 nmdc:mga05p37_96936_c1
494 nmdc:mga09592_39169_c1
495 nmdc:mga09592_634922_c1
496 nmdc:mga0qj67_215105_c1
497 nmdc:mga06r32_54491_c1
498 nmdc:mga06r32_73638_c1
499 nmdc:mga08y16_182029_c1
500 nmdc:mga08y16_222503_c1
501 nmdc:mga08y16_51368_c1
502 nmdc:mga08y16_9609_c1
503 nmdc:mga0n895_230169_c1
504 nmdc:mga0n895_234046_c1
505 nmdc:mga0rr50_171827_c1
506 nmdc:mga0a205_296589_c1
507 nmdc:mga0a205_559589_c1
508 Ga0500555_000137
509 Ga0590071_003604
510 Ga0590075_002611
511 Ga0590077_001258
512 Ga0501082_0001074
513 Ga0530510_0089198
514 Ga0530510_0214229

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21686

LigD_Prim-Pol

LigD, primase-polymerase domain

16

267

0.97

PF01896

DNA_primase_S

DNA primase small subunit

119

239

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
5dmu-assembly1.cif.gz_A structure of the nhej polymerase from methanocella paludicola 0.9533 2 280
2far-assembly2.cif.gz_B crystal structure of pseudomonas aeruginosa ligd polymerase domain with datp and manganese 0.9339 1 285
6sa1-assembly1.cif.gz_A post catalytic complex of prim-polc from mycobacterium smegmatis with gapped dna and 3'-dutp 0.9326 2 284
2iry-assembly1.cif.gz_A crystal structure of the polymerase domain from mycobacterium tuberculosis ligase d with dgtp and manganese. 0.9326 1 272
2far-assembly2.cif.gz_B crystal structure of pseudomonas aeruginosa ligd polymerase domain with datp and manganese 0.9122 1 285
ID Description Score Start End Superfamily
2iruB02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9455 115 246 3.30.70.3300
af_P9WNV3_16_301_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.944 7 274 3.90.920.10
af_O69697_22_304_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9372 8 284 3.90.920.10
af_P95226_24_305_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9293 8 284 3.90.920.10
2faqB01 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9284 8 285 3.90.920.10
ID Description Score Start End GO Terms
AF-A0A7W0R9N5-F1-model_v4 ATP-dependent DNA ligase 0.9941 1 288 GO:0005524
GO:0016874
GO:0046872
AF-A0A843SXZ4-F1-model_v4 ATP-dependent DNA ligase 0.9938 1 242 GO:0005524
GO:0016874
GO:0046872
AF-A0A2V8CSN1-F1-model_v4 DNA ligase D polymerase domain-containing protein 0.9897 2 288 GO:0005524
GO:0046872
AF-A0A0F7CTE9-F1-model_v4 ATP-dependent DNA ligase LigD (EC 6.5.1.1) 0.9827 2 288 GO:0003910
GO:0005524
GO:0046872
AF-A0A535HLP4-F1-model_v4 ATP-dependent DNA ligase 0.9815 1 289 GO:0005524
GO:0016874
GO:0046872

Map