F364439

General Info

Members Datasets Scaffolds Average Seq Length
253 183 215 1045

Family's Representative Sequence

Representative Sequence 3300050512|nmdc:mga0n895_10239_c1|nmdc:mga0n895_10239_c1_126_3767
Length 1213
Sequence VSNPFTESVVEEAALAWLESVGWRTAHGPEIAPDVPGAERRDYGEVVLAQRLHEALVRLNPALPADSLEDAFRKLMRPEGADLIQRNRALHRLLVDGVTVEYRDGEGAIRGAQARVIDFDHVPTNDWLAVNQFSVVENKHSRRPDVVLFINGLPLAVLELKNAASEDATIWSAFQQLQTYKAQIPSLLATNAVLIASDGVQARNGTLTAGREWFKPWRTISGEAVADAYMPELQVVIEGLLAPRRLLDLVRDFIVFEDDGSGSIVKKMAGYHQFHAVQVAVGETLRAARLHLGATPGAGPAPRLVRPKPVERYRSCVPFVPLKAAAGAFSDPQHVPDDELEWVEVETRRKLRPGMFAARVEGRSMEPEIPDGALCLFSAPVEGTRQGKAVLVQLHDEVDPETGERYTVKRYESEKASAGGSWRHTRITLKPANPDYPPIVLSPDQGERLQVVAELVEVLGVTRENARPGDRRVGVVWHTQGSGKSLTMAFYAGRIIREPAMGNPTLVVLTDRNDLDDQLFGTFSRCQELLRQPPVQAASRAHLRELLSVAAGGVVFTTIHKFFPEEKGDRHPTLSERRNIVVIADEAHRSQYDFIDGFARHMRDALPHASFIGFTGTPIELQDASTRAVFGDYISVYDIQRAVEDGATVPIYYESRLAKLALDEAERPKIDPDFEEATEGEEVERKEKLKTKWAQLEAVVGSPKRLAIVARDIVEHFEKRLEALDGKAMVVCMSRRICVELHDEIVKLRPGWVNKDDEQGAIKVVMTGSAADPTDWQDHIRNKSRREALANRFRDPADPFRMVLVRDMWLTGFDAPSLHTMYVDKPMRGHGLMQTIARVNRVFKDKPGGLIVDYLGLAHELKRALATYTESGGTGRTALDQNEAVAVMLEKYEVCCGLFGPYTTPEGVVRGFDRSQWTTGTPQERLGLLPLAQEHILAQENGKDRCIRAVRELSRAFALAVPHEEALRIRDDVAFFQAVQAVLAKRAPADARPEEELDHAVRQIISRAVAPEGVMDIFAAAGLERPDLSILSDEFLAEVRDMPQRNLAVELLQKLLKGELATRRRKNVVQARSFAEMLEQTIRKYQNRALAAAEVIEELIALAKDMREANARGEALGLTEDELAFYDALETNDSAVKVLGDETLREIARELVETVRNNVTIDWTLRENVRAQLRVLVKRILRKHGYPPDKQEKATQTVLEQAALLSEVWAAAA

Samples

Sample ID Description Type Environment
1 2510065055 Pseudomonas sp. MOIL14HWK12:I2 Isolate Rhizosphere
2 2526164512 Azovibrio restrictus DSM 23866 Isolate Unclassified
3 2561511199 Enterobacter sp. R4-368 Isolate Nodule
4 2599185319 Pseudomonas sp. NFACC24-1 Isolate Rhizoplane
5 2643221736 Bosea sp. Root483D1 Isolate Unclassified
6 2687453129 Halotalea alkalilenta IHB B 13600 Isolate Unclassified
7 2738543012 Acidovorax sp. CF301 Isolate Unclassified
8 2744054655 Acinetobacter sp. BMW17 Isolate Unclassified
9 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
10 2773857770 Acinetobacter sp. 3636 Isolate Unclassified
11 2791355197 Bradyrhizobium sp. C9 Isolate Nodule
12 2842815866 Pseudomonas sp. R-72210 Isolate Unclassified
13 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
14 2883087390 Paraburkholderia guartelaensis CNPSo 3008 Isolate Unclassified
15 2885429604 Sphingomonas sp. WZY 27 Isolate Rhizosphere
16 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
17 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
18 2895525241 Pseudoxanthomonas sp. SGT-18 Isolate Rhizosphere
19 2916178963 Pseudoalteromonas rhizosphaerae RA15 Isolate Rhizosphere
20 2916699645 Acinetobacter ursingii M3 Isolate Unclassified
21 2919713450 Nocardia kruczakiae 4272 Isolate Rhizosphere
22 2935777560 Bradyrhizobium sp. LB14.3 Isolate Nodule
23 2939642701 Lelliottia nimipressuralis 2756 Isolate Rhizosphere
24 2941538514 Bradyrhizobium sp. RT11b Isolate Nodule
25 2958071322 Mesorhizobium sp. M6A.T.Ce.TU.016.01.1.1 Isolate Nodule
26 2974320154 Acidovorax wautersii SORGH_AS 335 Isolate Unclassified
27 2984504281 Pseudomonas psychrotolerans SORGH_AS201 Isolate Aerial Root
28 2987605356 Stenotrophomonas sp. ATCM1_4 Isolate Unclassified
29 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
30 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
31 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
32 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
33 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
34 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
35 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
36 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
37 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
38 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
39 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
40 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
41 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
42 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
43 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
44 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
45 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
46 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
47 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
48 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
49 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
50 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
51 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
52 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
53 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
54 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
55 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
56 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
57 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
58 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
59 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
60 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
61 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
62 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
63 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
64 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
65 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
66 3300021324 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4 Metagenome Nodule
67 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
68 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
73 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
74 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
76 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
77 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
94 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
95 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
96 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
97 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
98 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
99 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
100 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
101 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
102 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
103 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
104 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
105 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
106 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
107 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
108 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
109 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
110 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
111 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
112 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
113 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
114 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
115 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
116 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
117 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
118 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
119 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
120 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
121 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
122 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
123 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
124 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
125 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
126 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
127 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
128 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
129 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
130 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
131 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
132 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
133 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
134 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
135 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
136 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
137 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
138 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
139 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
140 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
141 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
142 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
143 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
144 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
145 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
146 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
147 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
148 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
149 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
150 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
151 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
152 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
153 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
154 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
155 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
156 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
157 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
158 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
159 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
160 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
161 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
162 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
163 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
164 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
165 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
166 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
167 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
168 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
169 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
170 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
171 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
172 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
173 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
174 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
175 8002745576 Marinomonas spartinae USM8 Isolate Rhizosphere
176 8016613128 Bradyrhizobium sp. LB7.1 Isolate Nodule
177 8016728285 Pseudomonas psychrotolerans SORGH_AS 227 Isolate Unclassified
178 8019538911 Bradyrhizobium sp. LB9.1b Isolate Nodule
179 8021626552 Xanthomonas sp. LMG12460 Isolate Rhizosphere
180 8054849141 Dryocola clanedunensis H11S18 Isolate Rhizosphere
181 8055092621 Silvania confinis H4N4 Isolate Rhizosphere
182 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere
183 8057160832 Larsenimonas rhizosphaerae GH2-1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 84.98
Metatranscriptomes 0
Isolates 15.02

Biome Distribution

Category Percentage (%)
Aerial Root 0.4
Bulb 0
Endosphere 10.28
Nodule 8.7
Rhizoplane 1.19
Rhizosphere 66.01
Stem 0
Stem Tuber 0
Unclassified 13.44

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1001977 3300002987 Bacteria 8162
2 rootL2_10053214 3300003322 Bacteria 10533
3 Ga0055539_1000396 3300003752 Bacteria 17187
4 Ga0055533_1000397 3300003756 Bacteria 17187
5 Ga0055524_1000894 3300003775 Bacteria 19311
6 Ga0055534_1000181 3300003784 Bacteria 46083
7 Ga0055531_10001905 3300003794 Bacteria 14611
8 Ga0065165_1000026 3300005262 Bacteria 233376
9 Ga0070659_100005659 3300005366 Bacteria 8983
10 Ga0070709_10000016 3300005434 Bacteria 145008
11 Ga0070714_100000366 3300005435 Bacteria 33852
12 Ga0070711_100009027 3300005439 Bacteria 6122
13 Ga0070694_100000009 3300005444 Bacteria 93486
14 Ga0070662_100000148 3300005457 Bacteria 40063
15 Ga0070681_10000042 3300005458 Bacteria 87425
16 Ga0070681_10002760 3300005458 Bacteria 16201
17 Ga0070681_10034175 3300005458 Bacteria 5106
18 Ga0070706_100001017 3300005467 Bacteria 30401
19 Ga0070706_100004104 3300005467 Bacteria 14168
20 Ga0070706_100011470 3300005467 Bacteria 8236
21 Ga0070707_100000616 3300005468 Bacteria 35696
22 Ga0070707_100004272 3300005468 Bacteria 13379
23 Ga0070698_100006050 3300005471 Bacteria 13180
24 Ga0070679_100000033 3300005530 Bacteria 104826
25 Ga0070679_100006707 3300005530 Bacteria 10738
26 Ga0068853_100004110 3300005539 Bacteria 11214
27 Ga0070704_100031977 3300005549 Bacteria 3544
28 Ga0075364_10003501 3300006051 Bacteria 8937
29 Ga0075364_10003539 3300006051 Bacteria 8889
30 Ga0075428_100000281 3300006844 Bacteria 49960
31 Ga0075429_100000322 3300006880 Bacteria 34410
32 Ga0099823_1013917 3300006944 Bacteria 8070
33 Ga0079104_1000001 3300006946 Bacteria 521847
34 Ga0079104_1000726 3300006946 Bacteria 29340
35 Ga0105251_10001988 3300009011 Bacteria 16636
36 Ga0105244_10000041 3300009036 Bacteria 155525
37 Ga0105244_10004205 3300009036 Bacteria 10009
38 Ga0105250_10001172 3300009092 Bacteria 14712
39 Ga0157371_10002509 3300013102 Bacteria 17431
40 Ga0157371_10003947 3300013102 Bacteria 13167
41 Ga0157369_10006825 3300013105 Bacteria 13167
42 Ga0163162_10005054 3300013306 Bacteria 12707
43 Ga0157375_10000087 3300013308 Bacteria 92762
44 Ga0182005_1001654 3300015265 Bacteria 8668
45 Ga0214544_1007094 3300021320 Bacteria 20034
46 Ga0214544_1007964 3300021320 Bacteria 18114
47 Ga0214542_1006945 3300021321 Bacteria 20143
48 Ga0214542_1007906 3300021321 Bacteria 18114
49 Ga0214542_1017871 3300021321 Bacteria 6230
50 Ga0214545_1006610 3300021324 Bacteria 20062
51 Ga0214545_1007528 3300021324 Bacteria 18114
52 Ga0214543_1007760 3300021327 Bacteria 18114
53 Ga0214543_1016953 3300021327 Bacteria 7366
54 Ga0209674_100068 3300025226 Bacteria 245612
55 Ga0209674_100197 3300025226 Bacteria 62877
56 Ga0209677_100690 3300025253 Bacteria 17239
57 Ga0209148_1000059 3300025254 Bacteria 350224
58 Ga0209565_1000045 3300025263 Bacteria 226864
59 Ga0209130_1000102 3300025284 Bacteria 139255
60 Ga0209675_1000507 3300025291 Bacteria 28989
61 Ga0209564_1000371 3300025295 Bacteria 83128
62 Ga0209256_1000105 3300025299 Bacteria 188238
63 Ga0207426_1000825 3300025302 Bacteria 33172
64 Ga0209257_1002512 3300025304 Bacteria 18042
65 Ga0207696_1001205 3300025711 Bacteria 14718
66 Ga0207655_1000121 3300025728 Bacteria 155535
67 Ga0207655_1003219 3300025728 Bacteria 12272
68 Ga0207713_1001167 3300025735 Bacteria 22196
69 Ga0207684_10018343 3300025910 Bacteria 5991
70 Ga0207707_10000003 3300025912 Bacteria 642592
71 Ga0207707_10002116 3300025912 Bacteria 17975
72 Ga0207707_10003176 3300025912 Bacteria 14584
73 Ga0207695_10013829 3300025913 Bacteria 9600
74 Ga0207663_10006041 3300025916 Bacteria 6154
75 Ga0207660_10003080 3300025917 Bacteria 10894
76 Ga0207652_10000024 3300025921 Bacteria 157748
77 Ga0207652_10003673 3300025921 Bacteria 12624
78 Ga0207646_10001008 3300025922 Bacteria 36058
79 Ga0207664_10000175 3300025929 Bacteria 49797
80 Ga0207690_10000195 3300025932 Bacteria 47145
81 Ga0207706_10000235 3300025933 Bacteria 60742
82 Ga0207667_10040543 3300025949 Bacteria 4958
83 Ga0207639_10000882 3300026041 Bacteria 20358
84 Ga0209281_1000057 3300027111 Bacteria 307145
85 Ga0209281_1000145 3300027111 Bacteria 170793
86 Ga0209389_1000871 3300027296 Bacteria 19535
87 Ga0265327_10003801 3300031251 Bacteria 13976
88 Ga0307408_100000073 3300031548 Bacteria 113106
89 Ga0307408_100003445 3300031548 Bacteria 10824
90 Ga0307508_10013677 3300031616 Bacteria 7410
91 Ga0373935_0000047 3300035692 Bacteria 48637
92 Ga0373927_0002495 3300035695 Bacteria 13432
93 Ga0373937_0006250 3300036401 Bacteria 10274
94 Ga0373925_0003548 3300037068 Bacteria 12031
95 Ga0395905_0000111 3300037471 Bacteria 136345
96 Ga0395905_0003124 3300037471 Bacteria 17863
97 Ga0436365_1306003 3300039437 Bacteria 6475
98 Ga0439432_000258 3300042006 Bacteria 19006
99 Ga0439451_000082 3300042009 Bacteria 16763
100 Ga0439452_000782 3300042010 Bacteria 15101
101 Ga0439463_000355 3300042016 Bacteria 12783
102 Ga0439460_0000281 3300042461 Bacteria 10604
103 Ga0451577_0002477 3300042876 Bacteria 21951
104 Ga0451577_0005767 3300042876 Bacteria 12552
105 Ga0466972_0000447 3300044658 Bacteria 21216
106 Ga0453683_0000573 3300044673 Bacteria 40674
107 Ga0453683_0000617 3300044673 Bacteria 38906
108 Ga0453683_0001782 3300044673 Bacteria 17820
109 Ga0453683_0003917 3300044673 Bacteria 10785
110 Ga0466961_0000493 3300044693 Bacteria 25137
111 Ga0453684_0000128 3300044712 Bacteria 335864
112 Ga0453684_0000158 3300044712 Bacteria 302033
113 Ga0453684_0001782 3300044712 Bacteria 57441
114 Ga0453684_0002257 3300044712 Bacteria 47728
115 Ga0453684_0006060 3300044712 Bacteria 23365
116 Ga0453684_0027054 3300044712 Bacteria 8246
117 Ga0453684_0027950 3300044712 Bacteria 8068
118 Ga0453684_0052911 3300044712 Bacteria 5304
119 Ga0451576_0002701 3300045051 Bacteria 25784
120 Ga0451576_0042925 3300045051 Bacteria 4774
121 Ga0495591_001782 3300046458 Bacteria 12745
122 Ga0495629_0000003 3300046459 Bacteria 529162
123 Ga0495653_0000023 3300046463 Bacteria 166207
124 Ga0495653_0004174 3300046463 Bacteria 11691
125 Ga0495650_0013465 3300046471 Bacteria 4322
126 Ga0495584_0013967 3300046491 Bacteria 4092
127 Ga0495585_0000707 3300046492 Bacteria 30070
128 Ga0495585_0036158 3300046492 Bacteria 2788
129 Ga0495583_0001648 3300046506 Bacteria 21690
130 Ga0495583_0002042 3300046506 Bacteria 18369
131 Ga0495583_0003715 3300046506 Bacteria 11349
132 Ga0495632_0000612 3300046519 Bacteria 32954
133 Ga0495632_0001459 3300046519 Bacteria 19647
134 Ga0495632_0002875 3300046519 Bacteria 12701
135 Ga0495643_0001550 3300046522 Bacteria 20497
136 Ga0495654_0000918 3300046530 Bacteria 21896
137 Ga0495654_0002551 3300046530 Bacteria 11658
138 Ga0495597_0000430 3300046542 Bacteria 35873
139 Ga0495668_0002878 3300046616 Bacteria 13638
140 Ga0495668_0013985 3300046616 Bacteria 4717
141 Ga0495661_0000272 3300046665 Bacteria 59328
142 Ga0495661_0004772 3300046665 Bacteria 9724
143 Ga0495649_0000245 3300046694 Bacteria 47917
144 Ga0495649_0003540 3300046694 Bacteria 10493
145 Ga0495672_0004042 3300047320 Bacteria 12257
146 Ga0495672_0011009 3300047320 Bacteria 6408
147 Ga0495676_0009371 3300047321 Bacteria 8918
148 Ga0495683_0002151 3300047323 Bacteria 12116
149 Ga0495687_000124 3300047443 Bacteria 118111
150 Ga0495681_0000073 3300047470 Bacteria 92561
151 Ga0495626_0000440 3300048091 Bacteria 42538
152 Ga0495626_0001823 3300048091 Bacteria 16059
153 Ga0496104_0001550 3300048907 Bacteria 19800
154 Ga0496105_0000953 3300048908 Bacteria 19802
155 Ga0496116_0004543 3300048919 Bacteria 13175
156 Ga0496117_0005590 3300048920 Bacteria 13138
157 Ga0496118_0006240 3300048921 Bacteria 13173
158 Ga0496119_0003244 3300048922 Bacteria 17025
159 Ga0496121_0005704 3300048924 Bacteria 15819
160 Ga0496121_0015620 3300048924 Bacteria 7927
161 Ga0496121_0027180 3300048924 Bacteria 5361
162 Ga0496122_0000535 3300048925 Bacteria 78641
163 Ga0496122_0001768 3300048925 Bacteria 33133
164 Ga0496123_0002148 3300048926 Bacteria 25192
165 Ga0496123_0005770 3300048926 Bacteria 12307
166 Ga0496124_0000416 3300048927 Bacteria 76111
167 Ga0496124_0006798 3300048927 Bacteria 12349
168 Ga0496124_0012649 3300048927 Bacteria 8302
169 Ga0496125_0000530 3300048928 Bacteria 65734
170 Ga0496126_0000959 3300048929 Bacteria 49499
171 Ga0496126_0004356 3300048929 Bacteria 16975
172 Ga0495678_000277 3300049459 Bacteria 56614
173 Ga0495678_000875 3300049459 Bacteria 26796
174 Ga0501032_0008579 3300049569 Bacteria 7450
175 Ga0501033_0004974 3300049570 Bacteria 10569
176 Ga0501034_0027085 3300049571 Bacteria 5832
177 Ga0501034_0068306 3300049571 Bacteria 3564
178 Ga0501036_0020729 3300049572 Bacteria 5521
179 Ga0501037_0000631 3300049573 Bacteria 27268
180 Ga0501037_0010529 3300049573 Bacteria 6793
181 Ga0501038_0055585 3300049574 Bacteria 3400
182 Ga0501039_0045354 3300049575 Bacteria 3396
183 Ga0501043_0003813 3300049579 Bacteria 12403
184 Ga0501043_0006769 3300049579 Bacteria 9148
185 Ga0501046_0000010 3300049580 Bacteria 331082
186 Ga0501046_0007878 3300049580 Bacteria 9336
187 Ga0501047_0015892 3300049581 Bacteria 7174
188 Ga0501047_0034716 3300049581 Bacteria 4869
189 Ga0501047_0040078 3300049581 Bacteria 4530
190 Ga0501069_0006939 3300049585 Bacteria 5920
191 Ga0501070_0007933 3300049586 Bacteria 8993
192 Ga0501070_0013249 3300049586 Bacteria 6950
193 Ga0501072_0004280 3300049588 Bacteria 10832
194 Ga0501073_0028891 3300049589 Bacteria 3962
195 Ga0501080_0005336 3300049742 Bacteria 11453
196 Ga0501080_0007972 3300049742 Bacteria 9598
197 Ga0501083_0003380 3300049744 Bacteria 11175
198 Ga0501035_0003825 3300049822 Bacteria 14346
199 Ga0501035_0021798 3300049822 Bacteria 5888
200 Ga0501044_0002597 3300049823 Bacteria 20526
201 Ga0501044_0005748 3300049823 Bacteria 13729
202 Ga0501044_0017441 3300049823 Bacteria 7703
203 Ga0501044_0023614 3300049823 Bacteria 6538
204 Ga0501044_0107543 3300049823 Bacteria 2800
205 nmdc:mga00v17_1288_c1 3300050491 Bacteria 13173
206 nmdc:mga00v17_543_c1 3300050491 Bacteria 21140
207 nmdc:mga09592_104_c1 3300050508 Bacteria 51756
208 nmdc:mga0n895_10239_c1 3300050512 Bacteria 8262
209 Ga0500566_0000056 3300053094 Bacteria 53974
210 Ga0500607_000254 3300053121 Bacteria 50052
211 Ga0500614_001333 3300053123 Bacteria 5941
212 Ga0500559_0000612 3300053136 Bacteria 24188
213 Ga0590071_000900 3300059421 Bacteria 8248
214 Ga0501082_0036157 3300060353 Bacteria 4255
215 Ga0501082_0059261 3300060353 Bacteria 3300

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300046492 Ga0495585_0036158 Ga0495585_0036158_29_2731 870
2 3300049823 Ga0501044_0107543 Ga0501044_0107543_51_2774 880
3 3300049823 Ga0501044_0023614 Ga0501044_0023614_3612_6497 900
4 3300060353 Ga0501082_0036157 Ga0501082_0036157_37_3333 920
5 3300046491 Ga0495584_0013967 Ga0495584_0013967_156_3326 965
6 3300042009 Ga0439451_000082 Ga0439451_000082_247_3396 966
7 3300044712 Ga0453684_0027054 Ga0453684_0027054_3559_6780 978
8 3300044712 Ga0453684_0027950 Ga0453684_0027950_3316_6426 981
9 3300048927 Ga0496124_0012649 Ga0496124_0012649_512_3736 984
10 3300044673 Ga0453683_0003917 Ga0453683_0003917_6198_9377 985
11 3300009011 Ga0105251_10001988 Ga0105251_100019882 986
12 3300009036 Ga0105244_10000041 Ga0105244_1000004156 986
13 3300025728 Ga0207655_1000121 Ga0207655_100012155 986
14 3300025735 Ga0207713_1001167 Ga0207713_100116715 986
15 3300046458 Ga0495591_001782 Ga0495591_001782_4933_8064 986
16 3300046694 Ga0495649_0000245 Ga0495649_0000245_27220_30351 986
17 3300048922 Ga0496119_0003244 Ga0496119_0003244_13089_16220 986
18 3300048925 Ga0496122_0001768 Ga0496122_0001768_16902_20033 986
19 3300048926 Ga0496123_0002148 Ga0496123_0002148_18650_21781 986
20 3300048929 Ga0496126_0004356 Ga0496126_0004356_13484_16615 986
21 3300005457 Ga0070662_100000148 Ga0070662_1000001489 991
22 3300025933 Ga0207706_10000235 Ga0207706_100002359 991
23 3300003775 Ga0055524_1000894 Ga0055524_100089417 992
24 3300003784 Ga0055534_1000181 Ga0055534_100018111 992
25 3300025263 Ga0209565_1000045 Ga0209565_1000045148 992
26 3300025291 Ga0209675_1000507 Ga0209675_100050719 992
27 3300025295 Ga0209564_1000371 Ga0209564_100037158 992
28 3300025299 Ga0209256_1000105 Ga0209256_1000105117 992
29 3300037471 Ga0395905_0003124 Ga0395905_0003124_9764_12940 992
30 3300049742 Ga0501080_0005336 Ga0501080_0005336_1418_4621 993
31 3300044673 Ga0453683_0000573 Ga0453683_0000573_4912_8055 994
32 3300044673 Ga0453683_0000617 Ga0453683_0000617_14515_17661 994
33 3300044712 Ga0453684_0002257 Ga0453684_0002257_14509_17655 994
34 3300044712 Ga0453684_0001782 Ga0453684_0001782_10805_13948 995
35 3300045051 Ga0451576_0042925 Ga0451576_0042925_224_3430 996
36 3300046530 Ga0495654_0000918 Ga0495654_0000918_4627_7776 996
37 3300048091 Ga0495626_0001823 Ga0495626_0001823_11759_14944 998
38 3300046522 Ga0495643_0001550 Ga0495643_0001550_15315_18545 999
39 3300013308 Ga0157375_10000087 Ga0157375_1000008752 1000
40 3300049459 Ga0495678_000277 Ga0495678_000277_14430_17579 1000
41 3300009092 Ga0105250_10001172 Ga0105250_1000117212 1001
42 3300025711 Ga0207696_1001205 Ga0207696_10012055 1001
43 3300031548 Ga0307408_100003445 Ga0307408_1000034456 1001
44 3300042006 Ga0439432_000258 Ga0439432_000258_9151_12300 1001
45 3300042010 Ga0439452_000782 Ga0439452_000782_7674_10823 1001
46 3300042016 Ga0439463_000355 Ga0439463_000355_2161_5310 1001
47 3300042461 Ga0439460_0000281 Ga0439460_0000281_5492_8641 1001
48 3300046506 Ga0495583_0002042 Ga0495583_0002042_9051_12221 1001
49 3300046519 Ga0495632_0001459 Ga0495632_0001459_10028_13177 1001
50 3300047321 Ga0495676_0009371 Ga0495676_0009371_503_3652 1001
51 3300049459 Ga0495678_000875 Ga0495678_000875_8051_11200 1001
52 3300049573 Ga0501037_0000631 Ga0501037_0000631_20030_23209 1001
53 3300049823 Ga0501044_0002597 Ga0501044_0002597_4096_7275 1001
54 3300005549 Ga0070704_100031977 Ga0070704_1000319772 1002
55 3300006844 Ga0075428_100000281 Ga0075428_10000028123 1002
56 3300048929 Ga0496126_0000959 Ga0496126_0000959_191_3322 1002
57 3300003322 rootL2_10053214 rootL2_100532144 1003
58 3300042876 Ga0451577_0005767 Ga0451577_0005767_7565_10720 1003
59 3300005467 Ga0070706_100004104 Ga0070706_1000041042 1004
60 3300013102 Ga0157371_10002509 Ga0157371_100025093 1004
61 3300048927 Ga0496124_0000416 Ga0496124_0000416_23628_26762 1004
62 3300013102 Ga0157371_10003947 Ga0157371_100039479 1006
63 3300013105 Ga0157369_10006825 Ga0157369_1000682510 1006
64 3300048919 Ga0496116_0004543 Ga0496116_0004543_9646_12795 1006
65 3300048920 Ga0496117_0005590 Ga0496117_0005590_373_3522 1006
66 3300048921 Ga0496118_0006240 Ga0496118_0006240_380_3529 1006
67 3300049571 Ga0501034_0027085 Ga0501034_0027085_863_4030 1006
68 3300049581 Ga0501047_0015892 Ga0501047_0015892_1721_4888 1006
69 3300044712 Ga0453684_0000128 Ga0453684_0000128_155025_158096 1007
70 3300049569 Ga0501032_0008579 Ga0501032_0008579_2689_5949 1009
71 3300049579 Ga0501043_0003813 Ga0501043_0003813_145_3405 1009
72 3300049822 Ga0501035_0003825 Ga0501035_0003825_481_3741 1009
73 iso_pu_bacteria 2919713450 2919719022 1010
74 3300025302 Ga0207426_1000825 Ga0207426_100082521 1011
75 3300049581 Ga0501047_0034716 Ga0501047_0034716_1025_4303 1011
76 3300059421 Ga0590071_000900 Ga0590071_000900_3036_6185 1011
77 iso_pu_bacteria 3006393351 3006399952 1011
78 iso_pu_bacteria 2862178590 2862179273 1012
79 iso_pu_bacteria 8056054917 8056057233 1012
80 3300039437 Ga0436365_1306003 Ga0436365_1306003_856_4035 1013
81 3300046665 Ga0495661_0000272 Ga0495661_0000272_7445_10606 1013
82 3300048091 Ga0495626_0000440 Ga0495626_0000440_16855_20067 1013
83 3300005439 Ga0070711_100009027 Ga0070711_1000090271 1014
84 3300006946 Ga0079104_1000001 Ga0079104_1000001160 1014
85 3300025912 Ga0207707_10003176 Ga0207707_1000317610 1014
86 3300025916 Ga0207663_10006041 Ga0207663_100060414 1014
87 3300027111 Ga0209281_1000057 Ga0209281_1000057157 1014
88 3300044712 Ga0453684_0006060 Ga0453684_0006060_12691_15786 1014
89 iso_pu_bacteria 2935777560 2935782336 1014
90 iso_pu_bacteria 8016613128 8016618698 1014
91 iso_pu_bacteria 8019538911 8019540781 1014
92 3300006051 Ga0075364_10003539 Ga0075364_100035394 1015
93 3300048927 Ga0496124_0006798 Ga0496124_0006798_1280_4429 1015
94 3300050491 nmdc:mga00v17_1288_c1 nmdc:mga00v17_1288_c1_6148_9297 1015
95 3300005458 Ga0070681_10002760 Ga0070681_100027606 1016
96 3300025912 Ga0207707_10002116 Ga0207707_1000211613 1016
97 3300049570 Ga0501033_0004974 Ga0501033_0004974_7014_10151 1016
98 3300049571 Ga0501034_0068306 Ga0501034_0068306_347_3484 1016
99 3300049572 Ga0501036_0020729 Ga0501036_0020729_1155_4292 1016
100 3300049575 Ga0501039_0045354 Ga0501039_0045354_185_3322 1016
101 3300049579 Ga0501043_0006769 Ga0501043_0006769_140_3277 1016
102 3300049581 Ga0501047_0040078 Ga0501047_0040078_186_3323 1016
103 3300049586 Ga0501070_0007933 Ga0501070_0007933_5685_8822 1016
104 3300049742 Ga0501080_0007972 Ga0501080_0007972_5850_8987 1016
105 3300049822 Ga0501035_0021798 Ga0501035_0021798_2609_5746 1016
106 iso_pu_bacteria 2883087390 2883091084 1016
107 3300005467 Ga0070706_100001017 Ga0070706_10000101727 1017
108 3300005468 Ga0070707_100000616 Ga0070707_10000061631 1017
109 3300025922 Ga0207646_10001008 Ga0207646_100010085 1017
110 iso_pu_bacteria 2744054655 2745162185 1017
111 iso_pu_bacteria 2773857770 2774439311 1017
112 iso_pu_bacteria 2916699645 2916699981 1017
113 3300005444 Ga0070694_100000009 Ga0070694_1000000098 1018
114 3300005467 Ga0070706_100011470 Ga0070706_1000114707 1018
115 3300006880 Ga0075429_100000322 Ga0075429_10000032212 1018
116 3300013306 Ga0163162_10005054 Ga0163162_100050544 1018
117 3300021321 Ga0214542_1017871 Ga0214542_10178712 1018
118 3300021327 Ga0214543_1016953 Ga0214543_10169532 1018
119 3300025910 Ga0207684_10018343 Ga0207684_100183434 1018
120 3300035692 Ga0373935_0000047 Ga0373935_0000047_28973_32056 1018
121 3300035695 Ga0373927_0002495 Ga0373927_0002495_2768_5851 1018
122 3300037068 Ga0373925_0003548 Ga0373925_0003548_1163_4246 1018
123 3300044712 Ga0453684_0000158 Ga0453684_0000158_228298_231447 1018
124 3300045051 Ga0451576_0002701 Ga0451576_0002701_15798_18947 1018
125 3300048924 Ga0496121_0015620 Ga0496121_0015620_4221_7382 1018
126 3300050508 nmdc:mga09592_104_c1 nmdc:mga09592_104_c1_28770_31913 1018
127 3300053094 Ga0500566_0000056 Ga0500566_0000056_18279_21440 1018
128 3300053123 Ga0500614_001333 Ga0500614_001333_331_3492 1018
129 iso_pu_bacteria 8057160832 8057163653 1018
130 3300005434 Ga0070709_10000016 Ga0070709_1000001659 1019
131 3300005458 Ga0070681_10000042 Ga0070681_1000004234 1019
132 3300005468 Ga0070707_100004272 Ga0070707_1000042725 1019
133 3300005530 Ga0070679_100000033 Ga0070679_10000003387 1019
134 3300005530 Ga0070679_100006707 Ga0070679_1000067078 1019
135 3300025912 Ga0207707_10000003 Ga0207707_10000003257 1019
136 3300025913 Ga0207695_10013829 Ga0207695_100138293 1019
137 3300025917 Ga0207660_10003080 Ga0207660_100030804 1019
138 3300025921 Ga0207652_10000024 Ga0207652_10000024125 1019
139 3300025921 Ga0207652_10003673 Ga0207652_100036739 1019
140 3300025949 Ga0207667_10040543 Ga0207667_100405432 1019
141 3300031251 Ga0265327_10003801 Ga0265327_100038013 1019
142 3300036401 Ga0373937_0006250 Ga0373937_0006250_5193_8336 1019
143 3300042876 Ga0451577_0002477 Ga0451577_0002477_7364_10531 1019
144 3300044673 Ga0453683_0001782 Ga0453683_0001782_13528_16677 1019
145 3300046459 Ga0495629_0000003 Ga0495629_0000003_523831_526992 1019
146 3300049573 Ga0501037_0010529 Ga0501037_0010529_2581_5736 1019
147 3300049580 Ga0501046_0000010 Ga0501046_0000010_209604_212750 1019
148 3300049580 Ga0501046_0007878 Ga0501046_0007878_2722_5877 1019
149 3300049585 Ga0501069_0006939 Ga0501069_0006939_1655_4810 1019
150 3300049586 Ga0501070_0013249 Ga0501070_0013249_1112_4267 1019
151 3300049589 Ga0501073_0028891 Ga0501073_0028891_38_3193 1019
152 3300049823 Ga0501044_0005748 Ga0501044_0005748_3269_6421 1019
153 3300049823 Ga0501044_0017441 Ga0501044_0017441_1590_4745 1019
154 3300050512 nmdc:mga0n895_10239_c1 nmdc:mga0n895_10239_c1_126_3767 1019
155 iso_pu_bacteria 2561511199 2562465779 1019
156 iso_pu_bacteria 2939642701 2939645891 1019
157 iso_pu_bacteria 8055092621 8055093124 1019
158 3300046463 Ga0495653_0000023 Ga0495653_0000023_63582_66665 1020
159 iso_pu_bacteria 2510065055 2510294843 1020
160 iso_pu_bacteria 2599185319 2600044687 1020
161 iso_pu_bacteria 2687453129 2687581193 1020
162 iso_pu_bacteria 2842815866 2842816744 1020
163 3300046665 Ga0495661_0004772 Ga0495661_0004772_4510_7611 1021
164 iso_pu_bacteria 2916178963 2916181523 1021
165 3300044712 Ga0453684_0052911 Ga0453684_0052911_2025_5168 1022
166 3300009036 Ga0105244_10004205 Ga0105244_100042053 1023
167 3300025728 Ga0207655_1003219 Ga0207655_10032193 1023
168 3300046616 Ga0495668_0013985 Ga0495668_0013985_480_3590 1023
169 3300048924 Ga0496121_0005704 Ga0496121_0005704_3314_6445 1023
170 3300005366 Ga0070659_100005659 Ga0070659_1000056592 1024
171 3300005435 Ga0070714_100000366 Ga0070714_10000036612 1024
172 3300005458 Ga0070681_10034175 Ga0070681_100341752 1024
173 3300005471 Ga0070698_100006050 Ga0070698_1000060506 1024
174 3300005539 Ga0068853_100004110 Ga0068853_1000041102 1024
175 3300006946 Ga0079104_1000726 Ga0079104_10007263 1024
176 3300025929 Ga0207664_10000175 Ga0207664_1000017519 1024
177 3300025932 Ga0207690_10000195 Ga0207690_1000019522 1024
178 3300026041 Ga0207639_10000882 Ga0207639_100008822 1024
179 3300027111 Ga0209281_1000145 Ga0209281_100014544 1024
180 3300031548 Ga0307408_100000073 Ga0307408_10000007372 1024
181 3300031616 Ga0307508_10013677 Ga0307508_100136773 1024
182 3300046542 Ga0495597_0000430 Ga0495597_0000430_14670_17840 1024
183 3300047443 Ga0495687_000124 Ga0495687_000124_63260_66445 1024
184 3300048925 Ga0496122_0000535 Ga0496122_0000535_61720_64902 1024
185 3300048926 Ga0496123_0005770 Ga0496123_0005770_3113_6295 1024
186 3300048928 Ga0496125_0000530 Ga0496125_0000530_13769_16951 1024
187 iso_pu_bacteria 8002745576 8002746281 1024
188 3300006051 Ga0075364_10003501 Ga0075364_100035012 1025
189 3300050491 nmdc:mga00v17_543_c1 nmdc:mga00v17_543_c1_12346_15498 1025
190 3300048924 Ga0496121_0027180 Ga0496121_0027180_1106_4240 1026
191 3300025254 Ga0209148_1000059 Ga0209148_1000059155 1029
192 3300049744 Ga0501083_0003380 Ga0501083_0003380_7699_10833 1030
193 iso_pu_bacteria 2895511927 2895518104 1034
194 iso_pu_bacteria 2895522137 2895524535 1034
195 iso_pu_bacteria 2974320154 2974321487 1034
196 iso_pu_bacteria 8054849141 8054852339 1034
197 iso_pu_bacteria 2526164512 2526213247 1035
198 iso_pu_bacteria 2747842501 2748017085 1035
199 iso_pu_bacteria 2895525241 2895525906 1035
200 iso_pu_bacteria 2984504281 2984505148 1035
201 iso_pu_bacteria 2987605356 2987606924 1035
202 iso_pu_bacteria 8016728285 8016732989 1035
203 iso_pu_bacteria 8021626552 8021626578 1035
204 iso_pu_bacteria 2738543012 2739244775 1036
205 3300003794 Ga0055531_10001905 Ga0055531_100019053 1038
206 3300025304 Ga0209257_1002512 Ga0209257_100251215 1038
207 3300046506 Ga0495583_0001648 Ga0495583_0001648_8630_11761 1038
208 3300046506 Ga0495583_0003715 Ga0495583_0003715_1585_4731 1038
209 3300046694 Ga0495649_0003540 Ga0495649_0003540_6844_9975 1038
210 3300047320 Ga0495672_0004042 Ga0495672_0004042_8628_11759 1038
211 3300003752 Ga0055539_1000396 Ga0055539_10003964 1039
212 3300003756 Ga0055533_1000397 Ga0055533_10003974 1039
213 3300015265 Ga0182005_1001654 Ga0182005_10016543 1039
214 3300025226 Ga0209674_100068 Ga0209674_100068143 1039
215 3300025226 Ga0209674_100197 Ga0209674_10019717 1039
216 3300025253 Ga0209677_100690 Ga0209677_10069015 1039
217 3300037471 Ga0395905_0000111 Ga0395905_0000111_72900_76106 1039
218 3300044658 Ga0466972_0000447 Ga0466972_0000447_2973_6161 1039
219 3300044693 Ga0466961_0000493 Ga0466961_0000493_1196_4384 1039
220 3300046463 Ga0495653_0004174 Ga0495653_0004174_8146_11352 1039
221 3300046519 Ga0495632_0002875 Ga0495632_0002875_1512_4718 1039
222 3300046530 Ga0495654_0002551 Ga0495654_0002551_8062_11268 1039
223 3300046616 Ga0495668_0002878 Ga0495668_0002878_139_3342 1039
224 3300047320 Ga0495672_0011009 Ga0495672_0011009_577_3771 1039
225 3300047323 Ga0495683_0002151 Ga0495683_0002151_8083_11289 1039
226 3300047470 Ga0495681_0000073 Ga0495681_0000073_1114_4323 1039
227 iso_pu_bacteria 2885429604 2885429905 1039
228 iso_pu_bacteria 2958071322 2958077334 1040
229 iso_pu_bacteria 2941538514 2941543272 1041
230 3300046519 Ga0495632_0000612 Ga0495632_0000612_19133_22414 1042
231 iso_pu_bacteria 2643221736 2644745653 1042
232 iso_pu_bacteria 2791355197 2793072574 1042
233 3300046492 Ga0495585_0000707 Ga0495585_0000707_17483_20695 1043
234 3300006944 Ga0099823_1013917 Ga0099823_10139173 1044
235 3300027296 Ga0209389_1000871 Ga0209389_10008715 1044
236 3300053121 Ga0500607_000254 Ga0500607_000254_16639_19926 1044
237 3300053136 Ga0500559_0000612 Ga0500559_0000612_8592_11726 1044
238 3300021320 Ga0214544_1007964 Ga0214544_10079647 1045
239 3300021321 Ga0214542_1007906 Ga0214542_10079067 1045
240 3300021324 Ga0214545_1007528 Ga0214545_10075287 1045
241 3300021327 Ga0214543_1007760 Ga0214543_100776013 1045
242 3300046471 Ga0495650_0013465 Ga0495650_0013465_160_3369 1045
243 3300048907 Ga0496104_0001550 Ga0496104_0001550_11120_14290 1045
244 3300048908 Ga0496105_0000953 Ga0496105_0000953_11122_14292 1045
245 3300049574 Ga0501038_0055585 Ga0501038_0055585_114_3284 1045
246 3300049588 Ga0501072_0004280 Ga0501072_0004280_4926_8096 1045
247 3300060353 Ga0501082_0059261 Ga0501082_0059261_29_3199 1045
248 3300002987 JGI25159J45721_1001977 JGI25159J45721_10019777 1046
249 3300005262 Ga0065165_1000026 Ga0065165_1000026189 1046
250 3300021320 Ga0214544_1007094 Ga0214544_10070943 1046
251 3300021321 Ga0214542_1006945 Ga0214542_10069453 1046
252 3300021324 Ga0214545_1006610 Ga0214545_10066103 1046
253 3300025284 Ga0209130_1000102 Ga0209130_100010232 1046

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF11867

T1RH-like_C

Type I restriction enzyme HindI endonuclease subunit-like, C-terminal

871

1208

0.98

PF04313

HSDR_N

Type I restriction enzyme R protein N terminus (HSDR_N)

4

213

0.92

PF18766

SWI2_SNF2

SWI2/SNF2 ATPase

450

687

0.91

PF22679

UvrB_D3-like

UvrB domain 3

759

856

0.88

PF00717

Peptidase_S24

Peptidase S24-like

318

456

0.79

PF04851

ResIII

Type III restriction enzyme, res subunit

439

620

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
7bto-assembly1.cif.gz_F ecor124i-arda in the translocation state 0.8162 11 470
7bto-assembly1.cif.gz_F ecor124i-arda in the translocation state 0.774 11 470
3dkp-assembly1.cif.gz_A human dead-box rna-helicase ddx52, conserved domain i in complex with adp 0.6602 266 450
2g9n-assembly1.cif.gz_A structure of the dead domain of human eukaryotic initiation factor 4a, eif4a 0.6577 279 472
8bvw-assembly1.cif.gz_0 rna polymerase ii pre-initiation complex with the distal +1 nucleosome (pic-nuc18w) 0.6572 254 690
ID Description Score Start End Superfamily
af_Q60295_301_488_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9267 268 470 3.40.50.300
af_Q60295_301_488_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.922 268 470 3.40.50.300
af_Q60295_117_300_3.90.1570.50 Alpha Beta;Alpha-Beta Complex;tt1808, chain A; 0.8799 97 268 3.90.1570.50
af_Q60295_117_300_3.90.1570.50 Alpha Beta;Alpha-Beta Complex;tt1808, chain A; 0.8201 97 268 3.90.1570.50
af_Q58611_92_243_3.90.1570.50 Alpha Beta;Alpha-Beta Complex;tt1808, chain A; 0.8158 102 262 3.90.1570.50
ID Description Score Start End GO Terms
AF-A0A2H9MPM8-F1-model_v4 type I site-specific deoxyribonuclease (EC 3.1.21.3) 0.9882 77 277 GO:0003677
GO:0004386
GO:0005524
GO:0009035
GO:0009307
AF-A0A2H9MB83-F1-model_v4 type I site-specific deoxyribonuclease (EC 3.1.21.3) 0.9869 6 198 GO:0003677
GO:0004386
GO:0005524
GO:0009035
GO:0009307
AF-A0A847JG45-F1-model_v4 type I site-specific deoxyribonuclease (EC 3.1.21.3) 0.9866 4 327 GO:0003677
GO:0004519
GO:0005524
GO:0009307
AF-A0A662RDW4-F1-model_v4 type I site-specific deoxyribonuclease (EC 3.1.21.3) 0.9851 117 206 GO:0003677
GO:0004519
GO:0005524
GO:0009307
AF-A0A3M1ATN8-F1-model_v4 type I site-specific deoxyribonuclease (EC 3.1.21.3) 0.9831 4 236 GO:0003677
GO:0005524
GO:0009035
GO:0009307

Feature Viewer

pLDDT pTM Quality
77.67 0.61 Medium
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Predicted Structure (AlphaFold2)

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