F364222

General Info

Members Datasets Scaffolds Average Seq Length
253 184 253 263

Family's Representative Sequence

Representative Sequence 3300036401|Ga0373937_0112658|Ga0373937_0112658_305_1198
Length 297
Sequence LNPKIGKNIIRTAFGGSTAAKYPINTMKKPTKKNCRPGFGWMPDLPDNRDHLYAAPLAKLRVLPSKVDLRRQCPKVYNQGQIGSCTANAIAAAIEFDRKKQKLSDFIPSRLFIYYNERSMEHSVPLDNGAQIRDGIKSVAKQGACPETEWPYDDTPADSTTNLWSPDAKPAQKPPTACYSDAKKFRTVSYQRVDRMLAQFKGCLADGYPFVFGFTVYESFESAEVGRTGVLKLPKPKEGVVGGHAVLAVGYDDQSQRFIVRNSWGRSWGQKGYFTMPYSYLLTNNLSDDFWTIRLVH

Samples

Sample ID Description Type Environment
1 3300003163 Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
2 3300003693 Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_49 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
3 3300004798 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
4 3300004799 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
5 3300004800 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
6 3300004801 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
7 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
8 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
9 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
10 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
11 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
12 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
13 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
14 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
15 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
16 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
17 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
18 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
19 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
20 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
21 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
22 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
23 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
24 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
25 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
26 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
27 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
28 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
29 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
30 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
31 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
32 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
33 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
34 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
35 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
36 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
37 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
38 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
39 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
40 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
41 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
42 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
43 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
44 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
45 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
46 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
47 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
48 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
49 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
50 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
51 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
52 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
53 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
54 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
55 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
56 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
57 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
58 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
59 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
60 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
61 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
62 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
63 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
64 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
65 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
66 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
67 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
68 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
69 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
70 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
71 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
72 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
73 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
74 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
75 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
109 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
111 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
112 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
113 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
114 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
115 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
116 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
117 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
118 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
119 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
120 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
121 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
122 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
123 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
124 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
125 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
126 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
127 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
128 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
129 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
130 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
131 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
132 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
133 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
134 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
135 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
136 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
137 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
138 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
139 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
140 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
141 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
142 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
143 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
144 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
145 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
146 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
147 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
148 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
149 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
150 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
151 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
152 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
153 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
154 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
155 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
156 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
157 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
158 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
159 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
160 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
161 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
162 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
163 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
164 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
165 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
166 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
167 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
168 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
169 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
170 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
171 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
172 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
173 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
174 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
175 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
176 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
177 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
178 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
179 3300059506 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 52R_CW_T2_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
180 3300059511 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 56R_CD_T2_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
181 3300059607 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 163R_SW_T3_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
182 3300059624 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 146R_CW_T3_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
183 3300059640 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 8R_CD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
184 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.47
Metatranscriptomes 5.53
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 2.37
Rhizosphere 94.86
Stem 0
Stem Tuber 0
Unclassified 2.77

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0006759J45824_1045950 3300003163 Unclassified 998
2 Ga0032354_1053226 3300003693 Unclassified 1028
3 Ga0058859_11436759 3300004798 Bacteria 948
4 Ga0058863_11032355 3300004799 Unclassified 1044
5 Ga0058861_10622589 3300004800 Unclassified 1896
6 Ga0058860_10024156 3300004801 Bacteria 1038
7 Ga0058862_10981820 3300004803 Unclassified 1562
8 Ga0065704_10168539 3300005289 Bacteria 1306
9 Ga0065712_10083144 3300005290 Bacteria 2859
10 Ga0065712_10202754 3300005290 Bacteria 1085
11 Ga0065715_10006741 3300005293 Bacteria 7500
12 Ga0065715_10093882 3300005293 Bacteria 4495
13 Ga0070676_10007960 3300005328 Bacteria 5699
14 Ga0070676_10068428 3300005328 Bacteria 2125
15 Ga0070666_10004954 3300005335 Bacteria 8147
16 Ga0070666_10140904 3300005335 Bacteria 1679
17 Ga0068868_100003031 3300005338 Bacteria 11688
18 Ga0068868_100133326 3300005338 Bacteria 2034
19 Ga0070689_100363516 3300005340 Bacteria 1216
20 Ga0070689_100461890 3300005340 Bacteria 1082
21 Ga0070668_100072976 3300005347 Bacteria 2675
22 Ga0070671_100014097 3300005355 Bacteria 6453
23 Ga0070674_100039711 3300005356 Bacteria 3179
24 Ga0070674_100074226 3300005356 Bacteria 2413
25 Ga0070673_100001866 3300005364 Bacteria 12602
26 Ga0070688_100326519 3300005365 Bacteria 1116
27 Ga0070659_100457361 3300005366 Unclassified 1083
28 Ga0070709_10054120 3300005434 Unclassified 2529
29 Ga0070709_10063164 3300005434 Bacteria 2364
30 Ga0070714_100005793 3300005435 Bacteria 9473
31 Ga0070714_100231452 3300005435 Bacteria 1702
32 Ga0070714_100526071 3300005435 Bacteria 1130
33 Ga0070714_100707686 3300005435 Bacteria 972
34 Ga0070713_100000985 3300005436 Bacteria 18249
35 Ga0070713_100001382 3300005436 Bacteria 15533
36 Ga0070710_10112372 3300005437 Unclassified 1638
37 Ga0070711_100000051 3300005439 Bacteria 73775
38 Ga0070711_100000396 3300005439 Archaea 22478
39 Ga0070711_100011702 3300005439 Bacteria 5455
40 Ga0070711_100067803 3300005439 Unclassified 2505
41 Ga0070708_100140744 3300005445 Bacteria 2237
42 Ga0070678_100001833 3300005456 Bacteria 11466
43 Ga0070678_100283282 3300005456 Bacteria 1402
44 Ga0070662_100015483 3300005457 Bacteria 5110
45 Ga0070681_10200081 3300005458 Bacteria 1916
46 Ga0068867_100262946 3300005459 Bacteria 1407
47 Ga0070706_100115643 3300005467 Unclassified 2498
48 Ga0070706_100524726 3300005467 Bacteria 1102
49 Ga0070707_100006022 3300005468 Bacteria 11317
50 Ga0070698_100005415 3300005471 Bacteria 13949
51 Ga0070679_100002633 3300005530 Bacteria 16327
52 Ga0070684_100370992 3300005535 Bacteria 1318
53 Ga0070697_100023757 3300005536 Bacteria 4877
54 Ga0068853_100096311 3300005539 Bacteria 2611
55 Ga0070672_100006843 3300005543 Bacteria 7699
56 Ga0070672_100171032 3300005543 Bacteria 1807
57 Ga0070665_100734634 3300005548 Bacteria 1000
58 Ga0068855_101010285 3300005563 Bacteria 873
59 Ga0070664_100035862 3300005564 Bacteria 4164
60 Ga0068854_100341856 3300005578 Bacteria 1222
61 Ga0068856_100010426 3300005614 Bacteria 9023
62 Ga0068859_100055545 3300005617 Bacteria 3985
63 Ga0068866_10015306 3300005718 Bacteria 3405
64 Ga0068870_10006382 3300005840 Bacteria 5192
65 Ga0068860_100324897 3300005843 Bacteria 1510
66 Ga0081455_10002657 3300005937 Bacteria 21155
67 Ga0081540_1000016 3300005983 Bacteria 165370
68 Ga0081540_1035560 3300005983 Bacteria 2669
69 Ga0070717_10005712 3300006028 Bacteria 9099
70 Ga0070717_10063617 3300006028 Bacteria 3063
71 Ga0070717_10129627 3300006028 Bacteria 2168
72 Ga0070717_10299271 3300006028 Bacteria 1430
73 Ga0070717_10821233 3300006028 Unclassified 846
74 Ga0070715_10005077 3300006163 Bacteria 4367
75 Ga0070716_100014016 3300006173 Bacteria 4099
76 Ga0070716_100015176 3300006173 Bacteria 3953
77 Ga0070716_100150580 3300006173 Bacteria 1496
78 Ga0070712_100001637 3300006175 Bacteria 13691
79 Ga0070712_100013794 3300006175 Bacteria 5169
80 Ga0070712_100053347 3300006175 Bacteria 2822
81 Ga0070712_100088687 3300006175 Bacteria 2261
82 Ga0068871_100147530 3300006358 Bacteria 2004
83 Ga0075433_10760566 3300006852 Unclassified 847
84 Ga0075434_100441260 3300006871 Unclassified 1323
85 Ga0075436_100010484 3300006914 Bacteria 6354
86 Ga0075436_100143242 3300006914 Bacteria 1680
87 Ga0097620_100055545 3300006931 Bacteria 3985
88 Ga0075435_100369403 3300007076 Unclassified 1231
89 Ga0111539_10001410 3300009094 Bacteria 32012
90 Ga0114129_10057741 3300009147 Bacteria 5429
91 Ga0105242_10037251 3300009176 Bacteria 3906
92 Ga0105238_10524968 3300009551 Unclassified 1187
93 Ga0105249_10261393 3300009553 Bacteria 1720
94 Ga0099796_10046166 3300010159 Unclassified 1494
95 Ga0105246_10144873 3300011119 Bacteria 1791
96 Ga0105246_10382764 3300011119 Unclassified 1163
97 Ga0157369_10143903 3300013105 Bacteria 2521
98 Ga0157374_10004818 3300013296 Bacteria 11325
99 Ga0157374_10178946 3300013296 Bacteria 2071
100 Ga0157378_10007904 3300013297 Bacteria 9278
101 Ga0157378_10090403 3300013297 Bacteria 2782
102 Ga0157378_10424320 3300013297 Unclassified 1315
103 Ga0163162_10365852 3300013306 Bacteria 1575
104 Ga0157372_10469220 3300013307 Bacteria 1467
105 Ga0157375_10001330 3300013308 Bacteria 21300
106 Ga0157376_10007503 3300014969 Bacteria 7793
107 Ga0206352_11331112 3300020078 Bacteria 1094
108 Ga0207692_10256448 3300025898 Unclassified 1050
109 Ga0207642_10209709 3300025899 Bacteria 1082
110 Ga0207680_10000609 3300025903 Bacteria 16895
111 Ga0207699_10012061 3300025906 Bacteria 4387
112 Ga0207645_10002848 3300025907 Bacteria 13412
113 Ga0207645_10014171 3300025907 Bacteria 5340
114 Ga0207643_10003884 3300025908 Bacteria 8038
115 Ga0207684_10114663 3300025910 Bacteria 2308
116 Ga0207684_10146304 3300025910 Bacteria 2032
117 Ga0207695_10004501 3300025913 Bacteria 18972
118 Ga0207693_10000131 3300025915 Bacteria 67893
119 Ga0207693_10018517 3300025915 Bacteria 5545
120 Ga0207693_10047171 3300025915 Bacteria 3386
121 Ga0207693_10059128 3300025915 Bacteria 3002
122 Ga0207663_10000003 3300025916 Bacteria 458807
123 Ga0207663_10000178 3300025916 Archaea 28538
124 Ga0207663_10039329 3300025916 Bacteria 2865
125 Ga0207663_10109219 3300025916 Archaea 1874
126 Ga0207652_10003358 3300025921 Bacteria 13216
127 Ga0207646_10046342 3300025922 Bacteria 3900
128 Ga0207681_10028641 3300025923 Bacteria 3610
129 Ga0207650_10034922 3300025925 Bacteria 3648
130 Ga0207700_10003318 3300025928 Bacteria 9335
131 Ga0207700_10138838 3300025928 Unclassified 1994
132 Ga0207664_10180804 3300025929 Unclassified 1810
133 Ga0207644_10373302 3300025931 Unclassified 1162
134 Ga0207706_10039317 3300025933 Bacteria 4193
135 Ga0207670_10341102 3300025936 Bacteria 1184
136 Ga0207669_10007462 3300025937 Bacteria 5059
137 Ga0207665_10022340 3300025939 Bacteria 4161
138 Ga0207691_10000015 3300025940 Bacteria 142014
139 Ga0207689_10319529 3300025942 Bacteria 1288
140 Ga0207679_10048332 3300025945 Bacteria 3096
141 Ga0207651_10000145 3300025960 Bacteria 31036
142 Ga0207668_10138167 3300025972 Bacteria 1870
143 Ga0207640_10689352 3300025981 Bacteria 875
144 Ga0207677_10024911 3300026023 Bacteria 3725
145 Ga0207677_10029743 3300026023 Bacteria 3476
146 Ga0207639_10267023 3300026041 Bacteria 1499
147 Ga0207678_10189320 3300026067 Bacteria 1758
148 Ga0207702_10051504 3300026078 Bacteria 3480
149 Ga0207648_10000215 3300026089 Bacteria 62218
150 Ga0207683_10000241 3300026121 Bacteria 48819
151 Ga0207683_10036198 3300026121 Bacteria 4296
152 Ga0207428_10012039 3300027907 Bacteria 7612
153 Ga0268266_10011940 3300028379 Bacteria 7521
154 Ga0268266_10097119 3300028379 Bacteria 2591
155 Ga0268266_10348855 3300028379 Bacteria 1390
156 Ga0265337_1008703 3300028556 Unclassified 3667
157 Ga0265323_10045620 3300028653 Bacteria 1574
158 Ga0265336_10035487 3300028666 Bacteria 1537
159 Ga0265338_10003236 3300028800 Bacteria 23191
160 Ga0265338_10016886 3300028800 Bacteria 7902
161 Ga0265338_10115750 3300028800 Bacteria 2149
162 Ga0265320_10004909 3300031240 Bacteria 8680
163 Ga0265327_10001211 3300031251 Bacteria 34800
164 Ga0265327_10016412 3300031251 Bacteria 4705
165 Ga0265316_10125660 3300031344 Bacteria 1934
166 Ga0265316_10186724 3300031344 Unclassified 1542
167 Ga0307509_10178987 3300031507 Unclassified 1989
168 Ga0265342_10186207 3300031712 Bacteria 1135
169 Ga0373926_0050891 3300035083 Unclassified 1494
170 Ga0373934_0017973 3300035086 Archaea 2703
171 Ga0373923_0020557 3300035111 Archaea 2566
172 Ga0373936_0050994 3300035113 Bacteria 1674
173 Ga0373953_0000510 3300035117 Archaea 10797
174 Ga0373954_0004357 3300035118 Archaea 6086
175 Ga0373954_0014555 3300035118 Bacteria 3509
176 Ga0373956_0151334 3300035119 Bacteria 1092
177 Ga0373957_0005365 3300035120 Archaea 3969
178 Ga0373943_0056006 3300035170 Unclassified 1955
179 Ga0373955_0132019 3300035172 Archaea 1458
180 Ga0373955_0278451 3300035172 Bacteria 1006
181 Ga0373935_0095920 3300035692 Bacteria 1948
182 Ga0373935_0250445 3300035692 Archaea 1239
183 Ga0373927_0038970 3300035695 Bacteria 3084
184 Ga0373933_0000891 3300035724 Archaea 18269
185 Ga0373947_0005105 3300035725 Bacteria 7692
186 Ga0373947_0103376 3300035725 Unclassified 1793
187 Ga0373947_0311109 3300035725 Unclassified 1052
188 Ga0373937_0000106 3300036401 Archaea 79808
189 Ga0373937_0112658 3300036401 Bacteria 2531
190 Ga0373925_0011160 3300037068 Bacteria 6517
191 Ga0373925_0512991 3300037068 Unclassified 985
192 Ga0395899_0136238 3300037312 Bacteria 1750
193 Ga0395900_0000999 3300037418 Bacteria 36726
194 Ga0395900_0434948 3300037418 Bacteria 1271
195 Ga0395898_0022756 3300037466 Bacteria 6343
196 Ga0395905_0031653 3300037471 Viruses 4978
197 Ga0395905_0738481 3300037471 Unclassified 887
198 Ga0436364_1202701 3300037853 Bacteria 11208
199 Ga0395901_0000334 3300038443 Bacteria 57695
200 Ga0395901_0005659 3300038443 Bacteria 12645
201 Ga0436365_0355575 3300039437 Unclassified 2683
202 Ga0436365_1176775 3300039437 Bacteria 1833
203 Ga0451839_1648194 3300041496 Unclassified 1025
204 Ga0451577_0001593 3300042876 Bacteria 29571
205 Ga0453683_0161993 3300044673 Bacteria 1415
206 Ga0453684_0018587 3300044712 Bacteria 10655
207 Ga0466968_0000187 3300044735 Bacteria 18796
208 Ga0466959_0165186 3300045049 Bacteria 1555
209 Ga0495592_0018794 3300046454 Archaea 5262
210 Ga0495592_0121843 3300046454 Bacteria 1834
211 Ga0495629_0042925 3300046459 Bacteria 3176
212 Ga0495629_0451682 3300046459 Unclassified 870
213 Ga0495651_0008391 3300046462 Bacteria 7918
214 Ga0495653_0045275 3300046463 Archaea 3412
215 Ga0495580_0000205 3300046472 Bacteria 45568
216 Ga0495580_0010911 3300046472 Bacteria 7047
217 Ga0495580_0022430 3300046472 Bacteria 4646
218 Ga0495582_0001193 3300046473 Bacteria 14634
219 Ga0495630_0159382 3300046517 Unclassified 1718
220 Ga0495652_0113262 3300046529 Bacteria 2178
221 Ga0495665_0111768 3300046531 Unclassified 1433
222 Ga0495587_0005844 3300046536 Archaea 8013
223 Ga0495667_0025883 3300046559 Archaea 3952
224 Ga0495635_0155483 3300046663 Bacteria 1557
225 Ga0495657_0095432 3300046675 Archaea 1901
226 Ga0495599_0006871 3300046678 Archaea 6880
227 Ga0495599_0235840 3300046678 Bacteria 1116
228 Ga0495623_0004516 3300046679 Archaea 9139
229 Ga0495604_0228779 3300047317 Archaea 1276
230 Ga0495674_0008212 3300047319 Bacteria 9962
231 Ga0495674_0543345 3300047319 Unclassified 926
232 Ga0495675_0028536 3300047444 Archaea 3557
233 Ga0495684_0316988 3300047471 Archaea 1116
234 Ga0495602_0000081 3300048088 Archaea 94039
235 Ga0496104_0050010 3300048907 Bacteria 3944
236 Ga0496107_0272003 3300048910 Bacteria 1261
237 Ga0496108_0200159 3300048911 Bacteria 1733
238 Ga0496108_0457369 3300048911 Bacteria 1115
239 Ga0496112_0611881 3300048915 Bacteria 1021
240 Ga0496114_0016840 3300048917 Bacteria 5894
241 nmdc:mga05p37_700643_c1 3300050507 Bacteria 1125
242 nmdc:mga08y16_2186_c1 3300050511 Bacteria 20060
243 nmdc:mga0rr50_398584_c1 3300050513 Unclassified 1162
244 nmdc:mga08x19_106141_c1 3300050514 Bacteria 1869
245 nmdc:mga08x19_10_c1 3300050514 Bacteria 404490
246 Ga0495601_0044576 3300053077 Unclassified 2788
247 Ga0495619_0000643 3300053085 Archaea 23012
248 Ga0587085_015362 3300059506 Bacteria 1093
249 Ga0587091_014727 3300059511 Bacteria 1279
250 Ga0587125_007602 3300059607 Bacteria 1055
251 Ga0587109_015268 3300059624 Bacteria 1301
252 Ga0587067_014723 3300059640 Bacteria 1258
253 Ga0587111_0018102 3300060346 Bacteria 1321

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300035083 Ga0373926_0050891 Ga0373926_0050891_750_1412 210
2 3300035170 Ga0373943_0056006 Ga0373943_0056006_1170_1832 210
3 3300037068 Ga0373925_0011160 Ga0373925_0011160_2119_2781 210
4 3300046459 Ga0495629_0042925 Ga0495629_0042925_1142_1804 210
5 3300046529 Ga0495652_0113262 Ga0495652_0113262_1074_1802 225
6 3300046472 Ga0495580_0010911 Ga0495580_0010911_5776_6504 227
7 3300046531 Ga0495665_0111768 Ga0495665_0111768_184_912 227
8 3300046459 Ga0495629_0451682 Ga0495629_0451682_129_833 231
9 3300028800 Ga0265338_10003236 Ga0265338_1000323624 235
10 3300031344 Ga0265316_10186724 Ga0265316_101867242 235
11 3300005548 Ga0070665_100734634 Ga0070665_1007346342 237
12 3300046462 Ga0495651_0008391 Ga0495651_0008391_60_818 237
13 3300048915 Ga0496112_0611881 Ga0496112_0611881_19_735 237
14 3300009551 Ga0105238_10524968 Ga0105238_105249682 240
15 3300025913 Ga0207695_10004501 Ga0207695_1000450112 240
16 3300041496 Ga0451839_1648194 Ga0451839_1648194_228_989 240
17 3300006852 Ga0075433_10760566 Ga0075433_107605661 241
18 3300031251 Ga0265327_10001211 Ga0265327_1000121116 241
19 3300031507 Ga0307509_10178987 Ga0307509_101789871 241
20 3300046454 Ga0495592_0121843 Ga0495592_0121843_871_1626 241
21 3300005435 Ga0070714_100707686 Ga0070714_1007076861 242
22 3300006028 Ga0070717_10821233 Ga0070717_108212331 242
23 3300025916 Ga0207663_10109219 Ga0207663_101092192 242
24 3300005434 Ga0070709_10054120 Ga0070709_100541203 243
25 3300005435 Ga0070714_100005793 Ga0070714_1000057933 243
26 3300005436 Ga0070713_100000985 Ga0070713_10000098517 243
27 3300005436 Ga0070713_100001382 Ga0070713_1000013826 243
28 3300005439 Ga0070711_100000396 Ga0070711_10000039631 243
29 3300005439 Ga0070711_100011702 Ga0070711_1000117023 243
30 3300005563 Ga0068855_101010285 Ga0068855_1010102851 243
31 3300006028 Ga0070717_10063617 Ga0070717_100636173 243
32 3300006163 Ga0070715_10005077 Ga0070715_100050773 243
33 3300006173 Ga0070716_100014016 Ga0070716_1000140163 243
34 3300006175 Ga0070712_100001637 Ga0070712_10000163713 243
35 3300025906 Ga0207699_10012061 Ga0207699_100120613 243
36 3300025915 Ga0207693_10000131 Ga0207693_1000013112 243
37 3300025916 Ga0207663_10000178 Ga0207663_1000017811 243
38 3300025916 Ga0207663_10039329 Ga0207663_100393293 243
39 3300025928 Ga0207700_10003318 Ga0207700_1000331812 243
40 3300025928 Ga0207700_10138838 Ga0207700_101388383 243
41 3300025929 Ga0207664_10180804 Ga0207664_101808042 243
42 3300025939 Ga0207665_10022340 Ga0207665_100223402 243
43 3300028800 Ga0265338_10115750 Ga0265338_101157501 243
44 3300031251 Ga0265327_10016412 Ga0265327_100164125 243
45 3300035086 Ga0373934_0017973 Ga0373934_0017973_1234_1995 243
46 3300035111 Ga0373923_0020557 Ga0373923_0020557_621_1382 243
47 3300035113 Ga0373936_0050994 Ga0373936_0050994_680_1489 243
48 3300035117 Ga0373953_0000510 Ga0373953_0000510_6639_7400 243
49 3300035118 Ga0373954_0004357 Ga0373954_0004357_4293_5054 243
50 3300035118 Ga0373954_0014555 Ga0373954_0014555_843_1610 243
51 3300035120 Ga0373957_0005365 Ga0373957_0005365_3112_3873 243
52 3300035172 Ga0373955_0132019 Ga0373955_0132019_501_1262 243
53 3300035172 Ga0373955_0278451 Ga0373955_0278451_20_829 243
54 3300035692 Ga0373935_0095920 Ga0373935_0095920_298_1107 243
55 3300035692 Ga0373935_0250445 Ga0373935_0250445_185_946 243
56 3300035695 Ga0373927_0038970 Ga0373927_0038970_475_1242 243
57 3300035724 Ga0373933_0000891 Ga0373933_0000891_3113_3874 243
58 3300035725 Ga0373947_0005105 Ga0373947_0005105_4456_5265 243
59 3300035725 Ga0373947_0311109 Ga0373947_0311109_243_1010 243
60 3300036401 Ga0373937_0000106 Ga0373937_0000106_4795_5556 243
61 3300037068 Ga0373925_0512991 Ga0373925_0512991_26_787 243
62 3300038443 Ga0395901_0000334 Ga0395901_0000334_10953_11726 243
63 3300046454 Ga0495592_0018794 Ga0495592_0018794_256_1017 243
64 3300046463 Ga0495653_0045275 Ga0495653_0045275_1820_2581 243
65 3300046472 Ga0495580_0000205 Ga0495580_0000205_16019_16828 243
66 3300046472 Ga0495580_0022430 Ga0495580_0022430_2462_3229 243
67 3300046473 Ga0495582_0001193 Ga0495582_0001193_9488_10297 243
68 3300046517 Ga0495630_0159382 Ga0495630_0159382_480_1289 243
69 3300046536 Ga0495587_0005844 Ga0495587_0005844_6391_7152 243
70 3300046559 Ga0495667_0025883 Ga0495667_0025883_1882_2643 243
71 3300046663 Ga0495635_0155483 Ga0495635_0155483_228_995 243
72 3300046675 Ga0495657_0095432 Ga0495657_0095432_696_1457 243
73 3300046678 Ga0495599_0006871 Ga0495599_0006871_3430_4191 243
74 3300047317 Ga0495604_0228779 Ga0495604_0228779_342_1103 243
75 3300047319 Ga0495674_0008212 Ga0495674_0008212_8984_9793 243
76 3300047319 Ga0495674_0543345 Ga0495674_0543345_58_825 243
77 3300047444 Ga0495675_0028536 Ga0495675_0028536_1669_2430 243
78 3300047471 Ga0495684_0316988 Ga0495684_0316988_42_803 243
79 3300048088 Ga0495602_0000081 Ga0495602_0000081_74133_74894 243
80 3300053077 Ga0495601_0044576 Ga0495601_0044576_407_1216 243
81 3300053085 Ga0495619_0000643 Ga0495619_0000643_17457_18218 243
82 3300005293 Ga0065715_10006741 Ga0065715_100067415 244
83 3300005434 Ga0070709_10063164 Ga0070709_100631642 244
84 3300005458 Ga0070681_10200081 Ga0070681_102000813 244
85 3300005530 Ga0070679_100002633 Ga0070679_10000263312 244
86 3300006028 Ga0070717_10299271 Ga0070717_102992712 244
87 3300006173 Ga0070716_100015176 Ga0070716_1000151762 244
88 3300006175 Ga0070712_100088687 Ga0070712_1000886871 244
89 3300025915 Ga0207693_10047171 Ga0207693_100471711 244
90 3300025921 Ga0207652_10003358 Ga0207652_100033587 244
91 3300028666 Ga0265336_10035487 Ga0265336_100354872 244
92 3300028800 Ga0265338_10016886 Ga0265338_100168865 244
93 3300035725 Ga0373947_0103376 Ga0373947_0103376_590_1408 244
94 3300004799 Ga0058863_11032355 Ga0058863_110323551 245
95 3300004800 Ga0058861_10622589 Ga0058861_106225891 245
96 3300004803 Ga0058862_10981820 Ga0058862_109818202 245
97 3300005328 Ga0070676_10068428 Ga0070676_100684282 245
98 3300005335 Ga0070666_10140904 Ga0070666_101409042 245
99 3300005338 Ga0068868_100133326 Ga0068868_1001333263 245
100 3300005356 Ga0070674_100074226 Ga0070674_1000742263 245
101 3300005435 Ga0070714_100526071 Ga0070714_1005260712 245
102 3300005456 Ga0070678_100283282 Ga0070678_1002832822 245
103 3300005459 Ga0068867_100262946 Ga0068867_1002629462 245
104 3300005539 Ga0068853_100096311 Ga0068853_1000963114 245
105 3300005543 Ga0070672_100171032 Ga0070672_1001710322 245
106 3300005578 Ga0068854_100341856 Ga0068854_1003418562 245
107 3300005614 Ga0068856_100010426 Ga0068856_1000104264 245
108 3300005617 Ga0068859_100055545 Ga0068859_1000555456 245
109 3300005718 Ga0068866_10015306 Ga0068866_100153062 245
110 3300005840 Ga0068870_10006382 Ga0068870_100063822 245
111 3300005843 Ga0068860_100324897 Ga0068860_1003248972 245
112 3300006028 Ga0070717_10005712 Ga0070717_100057127 245
113 3300006358 Ga0068871_100147530 Ga0068871_1001475303 245
114 3300006931 Ga0097620_100055545 Ga0097620_1000555456 245
115 3300009176 Ga0105242_10037251 Ga0105242_100372516 245
116 3300009553 Ga0105249_10261393 Ga0105249_102613932 245
117 3300011119 Ga0105246_10144873 Ga0105246_101448732 245
118 3300013105 Ga0157369_10143903 Ga0157369_101439032 245
119 3300013296 Ga0157374_10004818 Ga0157374_100048184 245
120 3300013296 Ga0157374_10178946 Ga0157374_101789462 245
121 3300013297 Ga0157378_10090403 Ga0157378_100904034 245
122 3300013307 Ga0157372_10469220 Ga0157372_104692201 245
123 3300020078 Ga0206352_11331112 Ga0206352_113311121 245
124 3300025899 Ga0207642_10209709 Ga0207642_102097092 245
125 3300025907 Ga0207645_10002848 Ga0207645_100028486 245
126 3300025908 Ga0207643_10003884 Ga0207643_100038843 245
127 3300025923 Ga0207681_10028641 Ga0207681_100286412 245
128 3300025942 Ga0207689_10319529 Ga0207689_103195292 245
129 3300025981 Ga0207640_10689352 Ga0207640_106893521 245
130 3300026023 Ga0207677_10024911 Ga0207677_100249111 245
131 3300026041 Ga0207639_10267023 Ga0207639_102670231 245
132 3300026078 Ga0207702_10051504 Ga0207702_100515042 245
133 3300026089 Ga0207648_10000215 Ga0207648_100002158 245
134 3300026121 Ga0207683_10036198 Ga0207683_100361985 245
135 3300028379 Ga0268266_10348855 Ga0268266_103488551 245
136 3300044673 Ga0453683_0161993 Ga0453683_0161993_97_909 245
137 3300044735 Ga0466968_0000187 Ga0466968_0000187_6683_7459 245
138 3300045049 Ga0466959_0165186 Ga0466959_0165186_52_855 245
139 3300048911 Ga0496108_0457369 Ga0496108_0457369_223_1026 245
140 3300059506 Ga0587085_015362 Ga0587085_015362_64_837 245
141 3300059511 Ga0587091_014727 Ga0587091_014727_259_1032 245
142 3300059607 Ga0587125_007602 Ga0587125_007602_258_1031 245
143 3300059624 Ga0587109_015268 Ga0587109_015268_250_1023 245
144 3300059640 Ga0587067_014723 Ga0587067_014723_236_1009 245
145 3300060346 Ga0587111_0018102 Ga0587111_0018102_267_1040 245
146 3300004798 Ga0058859_11436759 Ga0058859_114367591 246
147 3300004801 Ga0058860_10024156 Ga0058860_100241561 246
148 3300005435 Ga0070714_100231452 Ga0070714_1002314522 246
149 3300006028 Ga0070717_10129627 Ga0070717_101296272 246
150 3300050507 nmdc:mga05p37_700643_c1 nmdc:mga05p37_700643_c1_318_1088 246
151 3300037853 Ga0436364_1202701 Ga0436364_1202701_319_1125 247
152 3300046679 Ga0495623_0004516 Ga0495623_0004516_8040_8912 247
153 3300039437 Ga0436365_0355575 Ga0436365_0355575_950_1753 248
154 3300005439 Ga0070711_100000051 Ga0070711_10000005135 249
155 3300006914 Ga0075436_100010484 Ga0075436_1000104846 249
156 3300006914 Ga0075436_100143242 Ga0075436_1001432422 249
157 3300007076 Ga0075435_100369403 Ga0075435_1003694032 249
158 3300013297 Ga0157378_10424320 Ga0157378_104243202 249
159 3300025916 Ga0207663_10000003 Ga0207663_10000003194 249
160 3300050513 nmdc:mga0rr50_398584_c1 nmdc:mga0rr50_398584_c1_202_1008 249
161 3300050514 nmdc:mga08x19_106141_c1 nmdc:mga08x19_106141_c1_1022_1828 249
162 3300050514 nmdc:mga08x19_10_c1 nmdc:mga08x19_10_c1_18759_19565 249
163 3300039437 Ga0436365_1176775 Ga0436365_1176775_630_1430 250
164 3300037312 Ga0395899_0136238 Ga0395899_0136238_425_1237 255
165 3300037418 Ga0395900_0000999 Ga0395900_0000999_13240_14052 255
166 3300037466 Ga0395898_0022756 Ga0395898_0022756_1609_2421 255
167 3300037471 Ga0395905_0031653 Ga0395905_0031653_3589_4401 255
168 3300038443 Ga0395901_0005659 Ga0395901_0005659_5421_6233 255
169 3300005290 Ga0065712_10083144 Ga0065712_100831442 256
170 3300005290 Ga0065712_10202754 Ga0065712_102027542 256
171 3300005293 Ga0065715_10093882 Ga0065715_100938823 256
172 3300005340 Ga0070689_100363516 Ga0070689_1003635162 256
173 3300005340 Ga0070689_100461890 Ga0070689_1004618901 256
174 3300005365 Ga0070688_100326519 Ga0070688_1003265192 256
175 3300005437 Ga0070710_10112372 Ga0070710_101123722 256
176 3300005439 Ga0070711_100067803 Ga0070711_1000678032 256
177 3300005445 Ga0070708_100140744 Ga0070708_1001407443 256
178 3300005467 Ga0070706_100115643 Ga0070706_1001156433 256
179 3300005467 Ga0070706_100524726 Ga0070706_1005247261 256
180 3300005468 Ga0070707_100006022 Ga0070707_10000602210 256
181 3300005471 Ga0070698_100005415 Ga0070698_1000054156 256
182 3300005535 Ga0070684_100370992 Ga0070684_1003709922 256
183 3300005536 Ga0070697_100023757 Ga0070697_1000237571 256
184 3300005937 Ga0081455_10002657 Ga0081455_1000265715 256
185 3300005983 Ga0081540_1000016 Ga0081540_100001627 256
186 3300005983 Ga0081540_1035560 Ga0081540_10355602 256
187 3300006173 Ga0070716_100150580 Ga0070716_1001505802 256
188 3300006175 Ga0070712_100013794 Ga0070712_1000137942 256
189 3300006175 Ga0070712_100053347 Ga0070712_1000533472 256
190 3300006871 Ga0075434_100441260 Ga0075434_1004412602 256
191 3300009147 Ga0114129_10057741 Ga0114129_100577415 256
192 3300010159 Ga0099796_10046166 Ga0099796_100461662 256
193 3300025898 Ga0207692_10256448 Ga0207692_102564481 256
194 3300025910 Ga0207684_10114663 Ga0207684_101146632 256
195 3300025910 Ga0207684_10146304 Ga0207684_101463042 256
196 3300025915 Ga0207693_10018517 Ga0207693_100185172 256
197 3300025915 Ga0207693_10059128 Ga0207693_100591283 256
198 3300025922 Ga0207646_10046342 Ga0207646_100463422 256
199 3300025936 Ga0207670_10341102 Ga0207670_103411022 256
200 3300028379 Ga0268266_10097119 Ga0268266_100971192 256
201 3300035119 Ga0373956_0151334 Ga0373956_0151334_253_1068 256
202 3300036401 Ga0373937_0112658 Ga0373937_0112658_305_1198 256
203 3300037418 Ga0395900_0434948 Ga0395900_0434948_332_1147 256
204 3300037471 Ga0395905_0738481 Ga0395905_0738481_46_861 256
205 3300046678 Ga0495599_0235840 Ga0495599_0235840_97_942 256
206 3300005328 Ga0070676_10007960 Ga0070676_100079606 257
207 3300005335 Ga0070666_10004954 Ga0070666_100049543 257
208 3300005338 Ga0068868_100003031 Ga0068868_10000303110 257
209 3300005347 Ga0070668_100072976 Ga0070668_1000729761 257
210 3300005355 Ga0070671_100014097 Ga0070671_1000140971 257
211 3300005356 Ga0070674_100039711 Ga0070674_1000397114 257
212 3300005364 Ga0070673_100001866 Ga0070673_10000186610 257
213 3300005366 Ga0070659_100457361 Ga0070659_1004573611 257
214 3300005456 Ga0070678_100001833 Ga0070678_10000183312 257
215 3300005457 Ga0070662_100015483 Ga0070662_1000154831 257
216 3300005543 Ga0070672_100006843 Ga0070672_10000684310 257
217 3300005564 Ga0070664_100035862 Ga0070664_1000358624 257
218 3300009094 Ga0111539_10001410 Ga0111539_1000141013 257
219 3300011119 Ga0105246_10382764 Ga0105246_103827642 257
220 3300013297 Ga0157378_10007904 Ga0157378_100079049 257
221 3300013306 Ga0163162_10365852 Ga0163162_103658522 257
222 3300013308 Ga0157375_10001330 Ga0157375_1000133019 257
223 3300014969 Ga0157376_10007503 Ga0157376_100075037 257
224 3300025903 Ga0207680_10000609 Ga0207680_100006094 257
225 3300025907 Ga0207645_10014171 Ga0207645_100141715 257
226 3300025925 Ga0207650_10034922 Ga0207650_100349224 257
227 3300025931 Ga0207644_10373302 Ga0207644_103733021 257
228 3300025933 Ga0207706_10039317 Ga0207706_100393174 257
229 3300025937 Ga0207669_10007462 Ga0207669_100074622 257
230 3300025940 Ga0207691_10000015 Ga0207691_100000159 257
231 3300025945 Ga0207679_10048332 Ga0207679_100483323 257
232 3300025960 Ga0207651_10000145 Ga0207651_100001456 257
233 3300025972 Ga0207668_10138167 Ga0207668_101381671 257
234 3300026023 Ga0207677_10029743 Ga0207677_100297433 257
235 3300026067 Ga0207678_10189320 Ga0207678_101893201 257
236 3300026121 Ga0207683_10000241 Ga0207683_100002419 257
237 3300027907 Ga0207428_10012039 Ga0207428_100120393 257
238 3300028379 Ga0268266_10011940 Ga0268266_100119406 257
239 3300028556 Ga0265337_1008703 Ga0265337_10087032 257
240 3300031240 Ga0265320_10004909 Ga0265320_100049095 257
241 3300042876 Ga0451577_0001593 Ga0451577_0001593_18691_19551 257
242 3300044712 Ga0453684_0018587 Ga0453684_0018587_151_1011 257
243 3300048907 Ga0496104_0050010 Ga0496104_0050010_2508_3359 257
244 3300048910 Ga0496107_0272003 Ga0496107_0272003_78_929 257
245 3300048911 Ga0496108_0200159 Ga0496108_0200159_622_1473 257
246 3300048917 Ga0496114_0016840 Ga0496114_0016840_4130_4981 257
247 3300050511 nmdc:mga08y16_2186_c1 nmdc:mga08y16_2186_c1_9695_10546 257
248 3300005289 Ga0065704_10168539 Ga0065704_101685391 258
249 3300028653 Ga0265323_10045620 Ga0265323_100456201 259
250 3300031344 Ga0265316_10125660 Ga0265316_101256601 259
251 3300031712 Ga0265342_10186207 Ga0265342_101862071 259
252 3300003163 Ga0006759J45824_1045950 Ga0006759J45824_10459501 263
253 3300003693 Ga0032354_1053226 Ga0032354_10532261 263

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00112

Peptidase_C1

Papain family cysteine protease

63

286

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ois-assembly1.cif.gz_A crystal structure xylellain, a cysteine protease from xylella fastidiosa 0.9584 22 262
3ois-assembly1.cif.gz_A crystal structure xylellain, a cysteine protease from xylella fastidiosa 0.8551 22 262
8a4u-assembly2.cif.gz_B crystal structure of human cathepsin l with caa0225 0.7981 24 257
8a4u-assembly2.cif.gz_B crystal structure of human cathepsin l with caa0225 0.7948 24 257
3hha-assembly2.cif.gz_B crystal structure of cathepsin l in complex with az12878478 0.794 24 257
ID Description Score Start End Superfamily
3oisC00 Alpha Beta;Alpha-Beta Complex;Cathepsin B; Chain A;Cysteine proteinases 0.9505 22 262 3.90.70.10
3oisC00 Alpha Beta;Alpha-Beta Complex;Cathepsin B; Chain A;Cysteine proteinases 0.8481 22 262 3.90.70.10
af_A0A0R0KWV5_150_228_2.40.50.170 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Cysteine proteinases. Chain C 0.8281 219 238 2.40.50.170
af_O17255_50_297_3.90.70.10 Alpha Beta;Alpha-Beta Complex;Cathepsin B; Chain A;Cysteine proteinases 0.794 24 259 3.90.70.10
af_U4PME4_9_234_3.90.70.10 Alpha Beta;Alpha-Beta Complex;Cathepsin B; Chain A;Cysteine proteinases 0.7926 24 227 3.90.70.10
ID Description Score Start End GO Terms
AF-A0A537QM53-F1-model_v4 Peptidase 0.9842 92 260 GO:0006508
GO:0008234
AF-A0A534A7T3-F1-model_v4 Peptidase 0.9806 23 260 GO:0006508
GO:0008234
AF-A0A537QM53-F1-model_v4 Peptidase 0.9784 92 260 GO:0006508
GO:0008234
AF-A0A6C0I8M6-F1-model_v4 Peptidase C1A papain C-terminal domain-containing protein 0.9781 19 259 GO:0006508
GO:0008234
AF-A0A535H0A3-F1-model_v4 Peptidase 0.9767 20 260 GO:0006508
GO:0008234

Feature Viewer

pLDDT pTM Quality
91.4 0.89 High
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Predicted Structure (AlphaFold2)

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