F362814

General Info

Members Datasets Scaffolds Average Seq Length
251 191 209 300

Family's Representative Sequence

Representative Sequence 3300053731|Ga0500609_000846|Ga0500609_000846_869_1978
Length 360
Sequence MISFFKLCLWPSEADAETLEMGSPAPGVECGNAHSGGAKTHRLGPKLAIIGFKPAWRAQRAARECTMIDWDDVRYFLAVARGGSVRAAAGRLGVNHATVLRRIAQLEERLGAQMFEKLPSGYRLTEAGEEVLELANQMEASSHQLETRVFGRDQSVRGLLRVTLAPQLATHLLMPDFADFARLHPDIEMEIQSSGELANLTNREADVALRVVYDRKTLPDNLHGLKGPELFGGVYRSRALLAAGRAGAPDPIRWIVISMHGIPDWVRAGEGVPFRITDAEAQIVAVRQGLGITTLPCFVGDADPLLVRVPGTDLHLYGTLWLLTQGETRKTKRVRLFTEFMSRRLAAYAPLLAGLSHTRD

Samples

Sample ID Description Type Environment
1 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
2 2517093000 Rhizobium leguminosarum bv. trifolii SRDI943 Isolate Nodule
3 2582581304 Rhizobium sp. YR519 Isolate Rhizosphere
4 2582581308 Rhizobium sp. OK494 Isolate Rhizosphere
5 2582581315 Agrobacterium rhizogenes YR147 Isolate Rhizosphere
6 2582581316 Agrobacterium rhizogenes OK036 Isolate Rhizosphere
7 2585427527 Rhizobium lusitanum YR374 Isolate Rhizosphere
8 2585427608 Agrobacterium rhizogenes OV677 Isolate Rhizosphere
9 2585428106 Caulobacter sp. OV484 Isolate Rhizosphere
10 2643221583 Caulobacter sp. Root655 Isolate Unclassified
11 2643221595 Mesorhizobium sp. Root695 Isolate Unclassified
12 2643221627 Mesorhizobium sp. Root102 Isolate Unclassified
13 2643221634 Rhizobium sp. Root1203 Isolate Unclassified
14 2643221640 Caulobacter sp. Root342 Isolate Unclassified
15 2643221642 Caulobacter sp. Root343 Isolate Unclassified
16 2643221688 Rhizobium sp. Root482 Isolate Unclassified
17 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
18 2874168670 Mesorhizobium kowhaii Ach-343 Isolate Nodule
19 2904690495 Bradyrhizobium ivorense CI-1B Isolate Nodule
20 2908756301 Bradyrhizobium ivorense CI-41S Isolate Nodule
21 2909042592 Labrys sp. LIt4 Isolate Nodule
22 2909399089 Nguyenibacter vanlangensis LMG 31431 Isolate Unclassified
23 2915986958 Sinorhizobium meliloti USDA1659 Isolate Nodule
24 2921208531 Sinorhizobium meliloti USDA1660 Isolate Nodule
25 2929615660 Bradyrhizobium japonicum TXVA Isolate Nodule
26 2929624759 Bradyrhizobium japonicum TXEA Isolate Nodule
27 2933577622 Bradyrhizobium japonicum SEMIA 417 Isolate Nodule
28 2937119839 Sinorhizobium meliloti USDA1790 Isolate Nodule
29 2960597568 Sinorhizobium meliloti 3085 Isolate Nodule
30 2960610863 Sinorhizobium meliloti USDA1792 Isolate Nodule
31 2960667422 Sinorhizobium meliloti USDA1170 Isolate Nodule
32 2960687367 Sinorhizobium meliloti USDA1462 Isolate Nodule
33 2964636051 Sinorhizobium meliloti USDA1594 Isolate Nodule
34 2977516862 Sinorhizobium meliloti USDA1791 Isolate Nodule
35 2977565890 Sinorhizobium meliloti USDA1617 Isolate Nodule
36 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
37 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
38 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
39 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
40 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
41 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
42 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
43 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
44 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
45 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
46 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
47 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
48 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
49 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
50 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
51 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
52 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
53 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
54 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
55 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
56 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
57 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
58 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
59 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
60 3300009763 Root nodule microbial communities of legume samples collected from Mexico - Siratro Mexico nodule mix Metagenome Nodule
61 3300009765 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule Metagenome Nodule
62 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
63 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
64 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
65 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
66 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
67 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
68 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
69 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
70 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
72 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
73 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
74 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
76 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
101 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
102 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
103 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
104 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
105 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
106 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
107 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
108 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
109 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
110 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
111 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
112 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
113 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
114 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
115 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
116 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
117 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
118 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
119 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
120 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
121 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
122 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
123 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
124 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
125 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
126 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
127 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
128 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
129 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
130 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
131 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
132 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
133 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
134 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
135 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
136 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
137 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
138 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
139 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
140 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
141 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
142 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
143 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
144 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
145 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
146 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
147 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
148 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
149 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
150 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
151 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
152 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
153 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
154 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
155 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
156 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
157 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
158 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
159 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
160 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
161 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
162 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
163 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
164 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
165 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
166 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
167 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
168 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
169 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
170 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
171 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
172 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
173 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
174 3300053105 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 endosphere Metagenome Endosphere
175 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
176 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
177 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
178 3300053126 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 endosphere Metagenome Endosphere
179 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
180 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
181 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
182 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
183 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
184 3300053731 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere Metagenome Endosphere
185 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
186 641228493 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
187 643348555 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
188 8003992118 Sinorhizobium meliloti RRI128 Isolate Nodule
189 8019659431 Bradyrhizobium sp. GM22.5 Isolate Nodule
190 8024486573 Rhizobium tubonense CCBAU 85046 Isolate Nodule
191 8055742211 Bradyrhizobium japonicum 5038 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 83.27
Metatranscriptomes 0
Isolates 16.73

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.55
Nodule 9.96
Rhizoplane 1.59
Rhizosphere 56.57
Stem 0
Stem Tuber 0
Unclassified 18.33

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10013951 3300001979 Bacteria 2979
2 JGI24735J21928_10009440 3300002067 Bacteria 3131
3 JGI25151J46595_10000063 3300003187 Bacteria 146046
4 Ga0055526_1002095 3300003771 Bacteria 13696
5 Ga0055526_1022963 3300003771 Bacteria 2099
6 Ga0055524_1000035 3300003775 Bacteria 174636
7 Ga0055534_1010007 3300003784 Bacteria 2014
8 Ga0065165_1000745 3300005262 Bacteria 44712
9 Ga0070658_10022376 3300005327 Bacteria 5071
10 Ga0070683_100226906 3300005329 Bacteria 1775
11 Ga0070680_100192769 3300005336 Bacteria 1717
12 Ga0070660_100045258 3300005339 Bacteria 3368
13 Ga0070660_100096549 3300005339 Bacteria 2337
14 Ga0070668_100369752 3300005347 Bacteria 1218
15 Ga0070659_100199022 3300005366 Bacteria 1648
16 Ga0070678_100144314 3300005456 Bacteria 1909
17 Ga0070681_10093274 3300005458 Bacteria 2959
18 Ga0068855_100295721 3300005563 Unclassified 1794
19 Ga0068857_100010969 3300005577 Bacteria 7885
20 Ga0068852_100002282 3300005616 Bacteria 13181
21 Ga0068852_100336141 3300005616 Bacteria 1471
22 Ga0068858_100062786 3300005842 Bacteria 3435
23 Ga0068860_100044259 3300005843 Bacteria 4243
24 Ga0068860_100305371 3300005843 Bacteria 1560
25 Ga0075365_10029676 3300006038 Bacteria 3498
26 Ga0097621_100036959 3300006237 Bacteria 3909
27 Ga0068871_100024640 3300006358 Bacteria 4668
28 Ga0105240_10000582 3300009093 Bacteria 67645
29 Ga0105240_10001260 3300009093 Bacteria 43913
30 Ga0123340_1046700 3300009763 Bacteria 1740
31 Ga0123341_1040151 3300009765 Bacteria 3067
32 Ga0123342_1022969 3300009766 Bacteria 4130
33 Ga0105239_10107885 3300010375 Bacteria 3085
34 Ga0157369_10000202 3300013105 Bacteria 82819
35 Ga0157374_10062966 3300013296 Bacteria 3478
36 Ga0163162_10200660 3300013306 Bacteria 2123
37 Ga0157379_10000230 3300014968 Bacteria 43712
38 Ga0157376_10012818 3300014969 Bacteria 6235
39 Ga0213872_10119501 3300021361 Bacteria 1166
40 Ga0209677_100189 3300025253 Bacteria 50237
41 Ga0209233_1000139 3300025261 Bacteria 197070
42 Ga0209675_1000905 3300025291 Bacteria 18956
43 Ga0209025_1000014 3300025294 Bacteria 865448
44 Ga0209564_1000049 3300025295 Bacteria 362075
45 Ga0209256_1000014 3300025299 Bacteria 687409
46 Ga0207656_10003329 3300025321 Bacteria 5509
47 Ga0207656_10013140 3300025321 Bacteria 3159
48 Ga0207647_10146423 3300025904 Bacteria 1382
49 Ga0207705_10003193 3300025909 Bacteria 12480
50 Ga0207705_10200135 3300025909 Bacteria 1513
51 Ga0207654_10000222 3300025911 Bacteria 34847
52 Ga0207707_10214434 3300025912 Bacteria 1676
53 Ga0207695_10000004 3300025913 Bacteria 1288665
54 Ga0207695_10002134 3300025913 Bacteria 29976
55 Ga0207695_10017497 3300025913 Bacteria 8339
56 Ga0207671_10126690 3300025914 Bacteria 1957
57 Ga0207671_10338186 3300025914 Bacteria 1193
58 Ga0207657_10022269 3300025919 Bacteria 5937
59 Ga0207657_10058211 3300025919 Bacteria 3326
60 Ga0207657_10070286 3300025919 Bacteria 2968
61 Ga0207649_10000319 3300025920 Bacteria 36478
62 Ga0207694_10000015 3300025924 Bacteria 363898
63 Ga0207694_10012060 3300025924 Bacteria 6516
64 Ga0207690_10183797 3300025932 Bacteria 1576
65 Ga0207690_10291352 3300025932 Bacteria 1274
66 Ga0207661_10352539 3300025944 Unclassified 1328
67 Ga0207679_10034685 3300025945 Bacteria 3563
68 Ga0207667_10000002 3300025949 Bacteria 895662
69 Ga0207667_10000226 3300025949 Bacteria 79075
70 Ga0207667_10464330 3300025949 Unclassified 1286
71 Ga0207668_10272965 3300025972 Bacteria 1383
72 Ga0207640_10003889 3300025981 Bacteria 8063
73 Ga0207703_10022318 3300026035 Bacteria 4963
74 Ga0207639_10001568 3300026041 Bacteria 15337
75 Ga0207678_10051752 3300026067 Bacteria 3545
76 Ga0207702_10000999 3300026078 Bacteria 29013
77 Ga0207702_10200208 3300026078 Bacteria 1850
78 Ga0207641_10047640 3300026088 Bacteria 3615
79 Ga0207674_10003594 3300026116 Bacteria 18907
80 Ga0207674_10030432 3300026116 Bacteria 5674
81 Ga0207698_10000906 3300026142 Bacteria 17268
82 Ga0207698_10047709 3300026142 Bacteria 3247
83 Ga0207698_10250966 3300026142 Bacteria 1619
84 Ga0268264_10025199 3300028381 Bacteria 4859
85 Ga0307517_10026139 3300028786 Bacteria 7091
86 Ga0307515_10220002 3300028794 Bacteria 1719
87 Ga0265314_10053536 3300031711 Bacteria 2798
88 Ga0265342_10004728 3300031712 Bacteria 10601
89 Ga0265342_10095287 3300031712 Bacteria 1702
90 Ga0307516_10005053 3300031730 Bacteria 15965
91 Ga0307414_10127595 3300032004 Bacteria 1968
92 Ga0395900_0230830 3300037418 Bacteria 1861
93 Ga0395905_0006705 3300037471 Bacteria 11530
94 Ga0395905_0121670 3300037471 Bacteria 2453
95 Ga0395905_0560536 3300037471 Bacteria 1044
96 Ga0395901_0099767 3300038443 Bacteria 3045
97 Ga0436365_0465090 3300039437 Bacteria 1345
98 Ga0436365_1721363 3300039437 Bacteria 1535
99 Ga0436360_0062449 3300039438 Bacteria 1274
100 Ga0436361_0256514 3300039447 Bacteria 4394
101 Ga0451804_0659697 3300041463 Bacteria 1522
102 Ga0451837_0247824 3300041494 Bacteria 1388
103 Ga0451849_0341231 3300041505 Bacteria 2471
104 Ga0451851_0088643 3300041507 Bacteria 2191
105 Ga0451851_0570358 3300041507 Bacteria 3348
106 Ga0495627_024615 3300046453 Bacteria 1960
107 Ga0495585_0045710 3300046492 Bacteria 2443
108 Ga0495607_0006912 3300046501 Bacteria 7910
109 Ga0495583_0014052 3300046506 Bacteria 4431
110 Ga0495606_0253957 3300046507 Bacteria 974
111 Ga0495610_0070941 3300046512 Bacteria 1625
112 Ga0495616_0078192 3300046513 Bacteria 1587
113 Ga0495620_0044176 3300046515 Bacteria 1937
114 Ga0495631_0002990 3300046518 Bacteria 9353
115 Ga0495632_0011835 3300046519 Bacteria 5074
116 Ga0495632_0101041 3300046519 Bacteria 1359
117 Ga0495637_0004991 3300046520 Bacteria 6828
118 Ga0495637_0009435 3300046520 Bacteria 4761
119 Ga0495637_0010513 3300046520 Bacteria 4472
120 Ga0495643_0136763 3300046522 Bacteria 1225
121 Ga0495648_0004493 3300046524 Bacteria 11909
122 Ga0495609_0029050 3300046538 Bacteria 2520
123 Ga0495609_0034624 3300046538 Bacteria 2288
124 Ga0495597_0069328 3300046542 Bacteria 1522
125 Ga0495622_0006457 3300046557 Bacteria 5439
126 Ga0495668_0001629 3300046616 Bacteria 20972
127 Ga0495668_0050558 3300046616 Bacteria 2303
128 Ga0495611_0094345 3300046648 Bacteria 1384
129 Ga0495625_0000408 3300046660 Bacteria 65240
130 Ga0495625_0002122 3300046660 Bacteria 22125
131 Ga0495625_0017056 3300046660 Bacteria 5691
132 Ga0495625_0131312 3300046660 Bacteria 1696
133 Ga0495588_0008140 3300046674 Bacteria 4796
134 Ga0495657_0072181 3300046675 Bacteria 2252
135 Ga0495670_0121064 3300046691 Bacteria 1359
136 Ga0495604_0003124 3300047317 Bacteria 13238
137 Ga0495604_0109048 3300047317 Bacteria 2021
138 Ga0495683_0046114 3300047323 Bacteria 2188
139 Ga0495687_001114 3300047443 Bacteria 26101
140 Ga0495681_0017566 3300047470 Bacteria 3967
141 Ga0495681_0025813 3300047470 Bacteria 3070
142 Ga0495686_0017302 3300047472 Bacteria 4860
143 Ga0496102_0000673 3300048905 Bacteria 34193
144 Ga0496103_0000523 3300048906 Bacteria 31469
145 Ga0496103_0067581 3300048906 Bacteria 2232
146 Ga0496116_0001023 3300048919 Bacteria 34143
147 Ga0496116_0012188 3300048919 Bacteria 7034
148 Ga0496116_0026157 3300048919 Bacteria 4273
149 Ga0496116_0064338 3300048919 Bacteria 2358
150 Ga0496117_0001451 3300048920 Bacteria 34193
151 Ga0496117_0023459 3300048920 Bacteria 4915
152 Ga0496117_0050037 3300048920 Bacteria 2966
153 Ga0496117_0077488 3300048920 Bacteria 2200
154 Ga0496118_0001548 3300048921 Bacteria 34193
155 Ga0496118_0064965 3300048921 Bacteria 2673
156 Ga0496118_0068921 3300048921 Bacteria 2565
157 Ga0496118_0233486 3300048921 Bacteria 1059
158 Ga0496119_0000708 3300048922 Bacteria 44757
159 Ga0496119_0064751 3300048922 Bacteria 2169
160 Ga0496120_0023864 3300048923 Bacteria 3822
161 Ga0496120_0040979 3300048923 Bacteria 2717
162 Ga0496121_0001605 3300048924 Bacteria 37523
163 Ga0496121_0063700 3300048924 Bacteria 3010
164 Ga0496121_0069875 3300048924 Bacteria 2831
165 Ga0496121_0122796 3300048924 Bacteria 1958
166 Ga0496121_0152317 3300048924 Bacteria 1700
167 Ga0496124_0001499 3300048927 Bacteria 34193
168 Ga0496124_0045802 3300048927 Bacteria 3749
169 Ga0496125_0165245 3300048928 Bacteria 1497
170 Ga0496126_0025743 3300048929 Bacteria 5655
171 Ga0495678_000566 3300049459 Bacteria 35417
172 Ga0495678_045779 3300049459 Bacteria 1724
173 Ga0495682_0000428 3300049460 Bacteria 29486
174 Ga0501031_0034547 3300049568 Bacteria 3300
175 Ga0501032_0001002 3300049569 Bacteria 22752
176 Ga0501033_0000349 3300049570 Bacteria 43927
177 Ga0501037_0000007 3300049573 Bacteria 215187
178 Ga0501043_0000034 3300049579 Bacteria 133724
179 Ga0501069_0000075 3300049585 Bacteria 48324
180 Ga0501070_0000424 3300049586 Bacteria 38425
181 Ga0501073_0023250 3300049589 Bacteria 4453
182 Ga0501074_0000101 3300049590 Bacteria 41856
183 Ga0501079_0197956 3300049741 Bacteria 1569
184 Ga0501080_0024976 3300049742 Bacteria 5542
185 Ga0501083_0000191 3300049744 Bacteria 39326
186 Ga0501035_0000546 3300049822 Bacteria 41848
187 Ga0501044_0000010 3300049823 Bacteria 260121
188 nmdc:mga0yw44_1193_c1 3300050492 Bacteria 10158
189 Ga0500578_0000056 3300053086 Bacteria 120189
190 Ga0500643_000032 3300053087 Bacteria 200350
191 Ga0500556_0005825 3300053104 Bacteria 3489
192 Ga0500557_011665 3300053105 Bacteria 2249
193 Ga0500569_003973 3300053109 Bacteria 3070
194 Ga0500594_0000012 3300053118 Bacteria 81832
195 Ga0500594_0004205 3300053118 Bacteria 3174
196 Ga0500594_0006050 3300053118 Bacteria 2705
197 Ga0500618_000176 3300053125 Bacteria 52663
198 Ga0500618_000344 3300053125 Bacteria 33227
199 Ga0500621_112002 3300053126 Bacteria 1065
200 Ga0500642_0131129 3300053130 Bacteria 1174
201 Ga0500658_0010960 3300053134 Bacteria 3342
202 Ga0500559_0010165 3300053136 Bacteria 4047
203 Ga0500559_0113555 3300053136 Bacteria 1256
204 Ga0500590_000200 3300053148 Bacteria 18250
205 Ga0500622_0000070 3300053156 Bacteria 115284
206 Ga0500622_0020878 3300053156 Bacteria 3475
207 Ga0500622_0026687 3300053156 Bacteria 3047
208 Ga0500609_000846 3300053731 Bacteria 4587
209 Ga0501082_0017518 3300060353 Bacteria 6172

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300039437 Ga0436365_1721363 Ga0436365_1721363_82_897 260
2 3300048922 Ga0496119_0064751 Ga0496119_0064751_383_1399 260
3 3300005456 Ga0070678_100144314 Ga0070678_1001443142 265
4 3300006237 Ga0097621_100036959 Ga0097621_1000369591 265
5 3300006358 Ga0068871_100024640 Ga0068871_1000246404 265
6 3300013296 Ga0157374_10062966 Ga0157374_100629664 265
7 3300013306 Ga0163162_10200660 Ga0163162_102006601 265
8 3300014969 Ga0157376_10012818 Ga0157376_100128183 265
9 3300026088 Ga0207641_10047640 Ga0207641_100476404 265
10 3300039437 Ga0436365_0465090 Ga0436365_0465090_70_903 266
11 iso_pu_bacteria 8019659431 8019662102 273
12 3300026142 Ga0207698_10250966 Ga0207698_102509661 275
13 3300037471 Ga0395905_0121670 Ga0395905_0121670_1594_2436 275
14 3300053087 Ga0500643_000032 Ga0500643_000032_24575_25471 277
15 3300046616 Ga0495668_0001629 Ga0495668_0001629_12843_13898 279
16 3300049568 Ga0501031_0034547 Ga0501031_0034547_979_1875 281
17 3300049569 Ga0501032_0001002 Ga0501032_0001002_2432_3328 281
18 3300049570 Ga0501033_0000349 Ga0501033_0000349_23703_24599 281
19 3300049573 Ga0501037_0000007 Ga0501037_0000007_84398_85294 281
20 3300049579 Ga0501043_0000034 Ga0501043_0000034_116214_117110 281
21 3300049585 Ga0501069_0000075 Ga0501069_0000075_16615_17511 281
22 3300049586 Ga0501070_0000424 Ga0501070_0000424_31125_32021 281
23 3300049589 Ga0501073_0023250 Ga0501073_0023250_1285_2181 281
24 3300049590 Ga0501074_0000101 Ga0501074_0000101_16615_17511 281
25 3300049741 Ga0501079_0197956 Ga0501079_0197956_346_1242 281
26 3300049742 Ga0501080_0024976 Ga0501080_0024976_3938_4834 281
27 3300049744 Ga0501083_0000191 Ga0501083_0000191_21816_22712 281
28 3300049822 Ga0501035_0000546 Ga0501035_0000546_16615_17511 281
29 3300049823 Ga0501044_0000010 Ga0501044_0000010_16615_17511 281
30 3300060353 Ga0501082_0017518 Ga0501082_0017518_3591_4487 281
31 3300005336 Ga0070680_100192769 Ga0070680_1001927692 282
32 3300005458 Ga0070681_10093274 Ga0070681_100932742 282
33 3300025912 Ga0207707_10214434 Ga0207707_102144342 282
34 3300025914 Ga0207671_10126690 Ga0207671_101266901 283
35 3300046501 Ga0495607_0006912 Ga0495607_0006912_3068_4015 284
36 3300047443 Ga0495687_001114 Ga0495687_001114_20433_21380 284
37 3300047470 Ga0495681_0025813 Ga0495681_0025813_452_1399 284
38 3300048928 Ga0496125_0165245 Ga0496125_0165245_226_1182 284
39 3300048920 Ga0496117_0050037 Ga0496117_0050037_640_1596 285
40 3300048921 Ga0496118_0233486 Ga0496118_0233486_93_1049 285
41 3300048924 Ga0496121_0069875 Ga0496121_0069875_913_1869 285
42 3300048927 Ga0496124_0045802 Ga0496124_0045802_659_1615 285
43 iso_pu_bacteria 2643221595 2643986504 287
44 iso_pu_bacteria 2874168670 2874175240 287
45 iso_pu_bacteria 2904690495 2904694691 287
46 iso_pu_bacteria 2908756301 2908760074 287
47 iso_pu_bacteria 2909399089 2909400852 287
48 iso_pu_bacteria 2929615660 2929618311 287
49 iso_pu_bacteria 2929624759 2929632499 287
50 3300053130 Ga0500642_0131129 Ga0500642_0131129_27_938 288
51 iso_pu_bacteria 2510917021 2511127651 288
52 iso_pu_bacteria 2582581316 2585336719 288
53 iso_pu_bacteria 2585427608 2585900444 288
54 iso_pu_bacteria 2643221583 2643923809 288
55 iso_pu_bacteria 2643221688 2644493980 288
56 iso_pu_bacteria 2738543031 2739349451 288
57 iso_pu_bacteria 2915986958 2915992512 288
58 iso_pu_bacteria 2921208531 2921213591 288
59 iso_pu_bacteria 2937119839 2937122251 288
60 iso_pu_bacteria 2960597568 2960602810 288
61 iso_pu_bacteria 2960610863 2960616032 288
62 iso_pu_bacteria 2960667422 2960673364 288
63 iso_pu_bacteria 2960687367 2960691357 288
64 iso_pu_bacteria 2964636051 2964642165 288
65 iso_pu_bacteria 2977516862 2977517411 288
66 iso_pu_bacteria 2977565890 2977571854 288
67 iso_pu_bacteria 8003992118 8003997633 288
68 iso_pu_bacteria 8024486573 8024490508 288
69 3300053731 Ga0500609_000846 Ga0500609_000846_869_1978 289
70 iso_pu_bacteria 2643221595 2643986033 289
71 iso_pu_bacteria 2643221627 2644153599 289
72 iso_pu_bacteria 2909042592 2909048137 289
73 iso_pu_bacteria 641228493 641334184 289
74 iso_pu_bacteria 643348555 643391817 289
75 3300041507 Ga0451851_0088643 Ga0451851_0088643_365_1252 290
76 iso_pu_bacteria 2517093000 2517099900 290
77 iso_pu_bacteria 2582581308 2585283284 290
78 iso_pu_bacteria 2582581315 2585328420 290
79 iso_pu_bacteria 2585427527 2585534693 290
80 iso_pu_bacteria 2643221634 2644192002 290
81 3300005347 Ga0070668_100369752 Ga0070668_1003697521 291
82 3300005577 Ga0068857_100010969 Ga0068857_1000109693 291
83 3300005843 Ga0068860_100305371 Ga0068860_1003053712 291
84 3300006038 Ga0075365_10029676 Ga0075365_100296762 291
85 3300025972 Ga0207668_10272965 Ga0207668_102729651 291
86 3300026116 Ga0207674_10003594 Ga0207674_1000359422 291
87 3300031712 Ga0265342_10095287 Ga0265342_100952871 291
88 3300037418 Ga0395900_0230830 Ga0395900_0230830_191_1081 291
89 3300037471 Ga0395905_0006705 Ga0395905_0006705_5741_6631 291
90 3300050492 nmdc:mga0yw44_1193_c1 nmdc:mga0yw44_1193_c1_2460_3368 291
91 3300053126 Ga0500621_112002 Ga0500621_112002_63_953 291
92 iso_pu_bacteria 2643221640 2644225975 291
93 iso_pu_bacteria 2643221642 2644235464 291
94 iso_pu_bacteria 2933577622 2933580238 291
95 iso_pu_bacteria 8055742211 8055746101 291
96 3300002067 JGI24735J21928_10009440 JGI24735J21928_100094403 292
97 3300005327 Ga0070658_10022376 Ga0070658_100223763 292
98 3300005339 Ga0070660_100096549 Ga0070660_1000965492 292
99 3300005366 Ga0070659_100199022 Ga0070659_1001990222 292
100 3300021361 Ga0213872_10119501 Ga0213872_101195011 292
101 3300025904 Ga0207647_10146423 Ga0207647_101464231 292
102 3300025909 Ga0207705_10003193 Ga0207705_100031936 292
103 3300025919 Ga0207657_10070286 Ga0207657_100702862 292
104 3300025932 Ga0207690_10183797 Ga0207690_101837972 292
105 3300032004 Ga0307414_10127595 Ga0307414_101275952 292
106 3300039438 Ga0436360_0062449 Ga0436360_0062449_21_992 292
107 3300039447 Ga0436361_0256514 Ga0436361_0256514_1965_2876 292
108 3300041505 Ga0451849_0341231 Ga0451849_0341231_39_1094 292
109 3300041507 Ga0451851_0570358 Ga0451851_0570358_715_1608 292
110 3300046453 Ga0495627_024615 Ga0495627_024615_567_1460 292
111 3300046492 Ga0495585_0045710 Ga0495585_0045710_771_1664 292
112 3300046506 Ga0495583_0014052 Ga0495583_0014052_3185_4078 292
113 3300046513 Ga0495616_0078192 Ga0495616_0078192_55_948 292
114 3300046518 Ga0495631_0002990 Ga0495631_0002990_7707_8600 292
115 3300046519 Ga0495632_0101041 Ga0495632_0101041_92_985 292
116 3300046520 Ga0495637_0009435 Ga0495637_0009435_3288_4181 292
117 3300046522 Ga0495643_0136763 Ga0495643_0136763_68_961 292
118 3300046538 Ga0495609_0029050 Ga0495609_0029050_265_1158 292
119 3300046538 Ga0495609_0034624 Ga0495609_0034624_653_1546 292
120 3300046557 Ga0495622_0006457 Ga0495622_0006457_3027_3992 292
121 3300046616 Ga0495668_0050558 Ga0495668_0050558_468_1361 292
122 3300046648 Ga0495611_0094345 Ga0495611_0094345_434_1327 292
123 3300046660 Ga0495625_0002122 Ga0495625_0002122_673_1566 292
124 3300046660 Ga0495625_0017056 Ga0495625_0017056_4082_4975 292
125 3300046674 Ga0495588_0008140 Ga0495588_0008140_3369_4262 292
126 3300046675 Ga0495657_0072181 Ga0495657_0072181_1129_2073 292
127 3300046691 Ga0495670_0121064 Ga0495670_0121064_436_1329 292
128 3300047317 Ga0495604_0003124 Ga0495604_0003124_3717_4682 292
129 3300047317 Ga0495604_0109048 Ga0495604_0109048_516_1460 292
130 3300047323 Ga0495683_0046114 Ga0495683_0046114_1155_2048 292
131 3300047470 Ga0495681_0017566 Ga0495681_0017566_2373_3266 292
132 3300048919 Ga0496116_0064338 Ga0496116_0064338_436_1329 292
133 3300048920 Ga0496117_0077488 Ga0496117_0077488_1016_1894 292
134 3300048921 Ga0496118_0064965 Ga0496118_0064965_938_1816 292
135 3300048922 Ga0496119_0000708 Ga0496119_0000708_30566_31459 292
136 3300048924 Ga0496121_0122796 Ga0496121_0122796_1017_1910 292
137 3300048929 Ga0496126_0025743 Ga0496126_0025743_3122_4066 292
138 3300049459 Ga0495678_045779 Ga0495678_045779_711_1604 292
139 3300053105 Ga0500557_011665 Ga0500557_011665_928_1821 292
140 3300053109 Ga0500569_003973 Ga0500569_003973_320_1213 292
141 3300053118 Ga0500594_0006050 Ga0500594_0006050_1317_2210 292
142 3300053125 Ga0500618_000344 Ga0500618_000344_24520_25446 292
143 3300053136 Ga0500559_0010165 Ga0500559_0010165_2198_3091 292
144 3300053148 Ga0500590_000200 Ga0500590_000200_1448_2392 292
145 3300053156 Ga0500622_0000070 Ga0500622_0000070_15290_16183 292
146 iso_pu_bacteria 2582581304 2585255323 292
147 3300001979 JGI24740J21852_10013951 JGI24740J21852_100139512 293
148 3300003187 JGI25151J46595_10000063 JGI25151J46595_1000006396 293
149 3300003771 Ga0055526_1002095 Ga0055526_10020955 293
150 3300003771 Ga0055526_1022963 Ga0055526_10229633 293
151 3300003775 Ga0055524_1000035 Ga0055524_100003584 293
152 3300003784 Ga0055534_1010007 Ga0055534_10100072 293
153 3300005262 Ga0065165_1000745 Ga0065165_100074518 293
154 3300005329 Ga0070683_100226906 Ga0070683_1002269062 293
155 3300005339 Ga0070660_100045258 Ga0070660_1000452585 293
156 3300005563 Ga0068855_100295721 Ga0068855_1002957211 293
157 3300005616 Ga0068852_100002282 Ga0068852_10000228213 293
158 3300005616 Ga0068852_100336141 Ga0068852_1003361413 293
159 3300005842 Ga0068858_100062786 Ga0068858_1000627864 293
160 3300005843 Ga0068860_100044259 Ga0068860_1000442594 293
161 3300009093 Ga0105240_10000582 Ga0105240_1000058219 293
162 3300009093 Ga0105240_10001260 Ga0105240_1000126024 293
163 3300009763 Ga0123340_1046700 Ga0123340_10467002 293
164 3300009765 Ga0123341_1040151 Ga0123341_10401513 293
165 3300009766 Ga0123342_1022969 Ga0123342_10229693 293
166 3300010375 Ga0105239_10107885 Ga0105239_101078855 293
167 3300013105 Ga0157369_10000202 Ga0157369_1000020241 293
168 3300014968 Ga0157379_10000230 Ga0157379_1000023010 293
169 3300025253 Ga0209677_100189 Ga0209677_10018919 293
170 3300025261 Ga0209233_1000139 Ga0209233_1000139114 293
171 3300025291 Ga0209675_1000905 Ga0209675_10009054 293
172 3300025294 Ga0209025_1000014 Ga0209025_1000014478 293
173 3300025295 Ga0209564_1000049 Ga0209564_100004928 293
174 3300025299 Ga0209256_1000014 Ga0209256_1000014611 293
175 3300025321 Ga0207656_10003329 Ga0207656_100033297 293
176 3300025321 Ga0207656_10013140 Ga0207656_100131401 293
177 3300025909 Ga0207705_10200135 Ga0207705_102001352 293
178 3300025911 Ga0207654_10000222 Ga0207654_1000022212 293
179 3300025913 Ga0207695_10000004 Ga0207695_10000004122 293
180 3300025913 Ga0207695_10002134 Ga0207695_1000213423 293
181 3300025913 Ga0207695_10017497 Ga0207695_100174978 293
182 3300025914 Ga0207671_10338186 Ga0207671_103381861 293
183 3300025919 Ga0207657_10022269 Ga0207657_100222692 293
184 3300025919 Ga0207657_10058211 Ga0207657_100582114 293
185 3300025920 Ga0207649_10000319 Ga0207649_1000031915 293
186 3300025924 Ga0207694_10000015 Ga0207694_10000015239 293
187 3300025924 Ga0207694_10012060 Ga0207694_100120607 293
188 3300025932 Ga0207690_10291352 Ga0207690_102913522 293
189 3300025944 Ga0207661_10352539 Ga0207661_103525392 293
190 3300025945 Ga0207679_10034685 Ga0207679_100346852 293
191 3300025949 Ga0207667_10000002 Ga0207667_1000000223 293
192 3300025949 Ga0207667_10000226 Ga0207667_1000022663 293
193 3300025949 Ga0207667_10464330 Ga0207667_104643302 293
194 3300025981 Ga0207640_10003889 Ga0207640_100038897 293
195 3300026035 Ga0207703_10022318 Ga0207703_100223185 293
196 3300026041 Ga0207639_10001568 Ga0207639_1000156811 293
197 3300026067 Ga0207678_10051752 Ga0207678_100517523 293
198 3300026078 Ga0207702_10000999 Ga0207702_1000099928 293
199 3300026078 Ga0207702_10200208 Ga0207702_102002082 293
200 3300026116 Ga0207674_10030432 Ga0207674_100304323 293
201 3300026142 Ga0207698_10000906 Ga0207698_1000090613 293
202 3300026142 Ga0207698_10047709 Ga0207698_100477092 293
203 3300028381 Ga0268264_10025199 Ga0268264_100251992 293
204 3300028786 Ga0307517_10026139 Ga0307517_100261392 293
205 3300028794 Ga0307515_10220002 Ga0307515_102200022 293
206 3300031711 Ga0265314_10053536 Ga0265314_100535362 293
207 3300031712 Ga0265342_10004728 Ga0265342_100047283 293
208 3300031730 Ga0307516_10005053 Ga0307516_1000505315 293
209 3300037471 Ga0395905_0560536 Ga0395905_0560536_27_929 293
210 3300038443 Ga0395901_0099767 Ga0395901_0099767_1074_1970 293
211 3300041463 Ga0451804_0659697 Ga0451804_0659697_369_1265 293
212 3300041494 Ga0451837_0247824 Ga0451837_0247824_291_1244 293
213 3300046507 Ga0495606_0253957 Ga0495606_0253957_28_954 293
214 3300046512 Ga0495610_0070941 Ga0495610_0070941_320_1222 293
215 3300046515 Ga0495620_0044176 Ga0495620_0044176_170_1225 293
216 3300046519 Ga0495632_0011835 Ga0495632_0011835_2630_3685 293
217 3300046520 Ga0495637_0004991 Ga0495637_0004991_4157_5068 293
218 3300046520 Ga0495637_0010513 Ga0495637_0010513_1400_2302 293
219 3300046524 Ga0495648_0004493 Ga0495648_0004493_10518_11399 293
220 3300046542 Ga0495597_0069328 Ga0495597_0069328_313_1215 293
221 3300046660 Ga0495625_0000408 Ga0495625_0000408_42440_43342 293
222 3300046660 Ga0495625_0131312 Ga0495625_0131312_179_1081 293
223 3300047472 Ga0495686_0017302 Ga0495686_0017302_888_1790 293
224 3300048905 Ga0496102_0000673 Ga0496102_0000673_3054_3950 293
225 3300048906 Ga0496103_0000523 Ga0496103_0000523_3054_3950 293
226 3300048906 Ga0496103_0067581 Ga0496103_0067581_1071_2024 293
227 3300048919 Ga0496116_0001023 Ga0496116_0001023_30194_31090 293
228 3300048919 Ga0496116_0012188 Ga0496116_0012188_3152_4105 293
229 3300048919 Ga0496116_0026157 Ga0496116_0026157_1907_2863 293
230 3300048920 Ga0496117_0001451 Ga0496117_0001451_30244_31140 293
231 3300048920 Ga0496117_0023459 Ga0496117_0023459_3489_4442 293
232 3300048921 Ga0496118_0001548 Ga0496118_0001548_30244_31140 293
233 3300048921 Ga0496118_0068921 Ga0496118_0068921_474_1427 293
234 3300048923 Ga0496120_0023864 Ga0496120_0023864_254_1207 293
235 3300048923 Ga0496120_0040979 Ga0496120_0040979_1513_2409 293
236 3300048924 Ga0496121_0001605 Ga0496121_0001605_19455_20408 293
237 3300048924 Ga0496121_0063700 Ga0496121_0063700_1415_2311 293
238 3300048924 Ga0496121_0152317 Ga0496121_0152317_250_1146 293
239 3300048927 Ga0496124_0001499 Ga0496124_0001499_3054_3950 293
240 3300049459 Ga0495678_000566 Ga0495678_000566_26633_27535 293
241 3300049460 Ga0495682_0000428 Ga0495682_0000428_7980_8867 293
242 3300053086 Ga0500578_0000056 Ga0500578_0000056_12128_13057 293
243 3300053104 Ga0500556_0005825 Ga0500556_0005825_2567_3478 293
244 3300053118 Ga0500594_0000012 Ga0500594_0000012_64524_65426 293
245 3300053118 Ga0500594_0004205 Ga0500594_0004205_172_1101 293
246 3300053125 Ga0500618_000176 Ga0500618_000176_2721_3623 293
247 3300053134 Ga0500658_0010960 Ga0500658_0010960_386_1288 293
248 3300053136 Ga0500559_0113555 Ga0500559_0113555_248_1129 293
249 3300053156 Ga0500622_0020878 Ga0500622_0020878_1231_2160 293
250 3300053156 Ga0500622_0026687 Ga0500622_0026687_190_1086 293
251 iso_pu_bacteria 2585428106 2587916460 293

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

70

129

0.98

PF03466

LysR_substrate

LysR substrate binding domain

153

226

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
4iht-assembly2.cif.gz_C crystal structure of benm_dbd/bena site 1 dna complex 0.9297 2 81
7trv-assembly1.cif.gz_A crystal structure of the dna-binding domain of the lysr family transcriptional regulator yfba from yersinia pestis 0.9244 3 83
4pzj-assembly1.cif.gz_A-2 1.60 angstrom resolution crystal structure of a transcriptional regulator of the lysr family from eggerthella lenta dsm 2243 0.9167 1 68
5xxp-assembly1.cif.gz_B crystal structure of cbnr_dbd-dna complex 0.9129 2 82
5z4y-assembly1.cif.gz_B crystal structure of pacysb ntd domain with space group p4 0.9097 1 81
ID Description Score Start End Superfamily
af_P0A9G2_1_86_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9657 1 79 1.10.10.10
af_P77171_5_91_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9656 2 78 1.10.10.10
af_P36771_5_92_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.964 1 78 1.10.10.10
af_P30864_1_87_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9556 3 84 1.10.10.10
af_Q57083_1_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9552 3 78 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A658JMP9-F1-model_v4 deleted 0.9442 2 80
AF-A0A7H4MN97-F1-model_v4 LysR family transcriptional regulator 0.9393 1 75 GO:0003700
GO:0006351
GO:0043565
AF-A0A2Y6EL52-F1-model_v4 LYSR-type transcriptional regulator 0.9181 1 83 GO:0003700
GO:0006351
GO:0043565
AF-A0A7H4MN97-F1-model_v4 LysR family transcriptional regulator 0.8827 1 75 GO:0003700
GO:0006351
GO:0043565
AF-A0A833N481-F1-model_v4 deleted 0.8749 2 84

Feature Viewer

pLDDT pTM Quality
84.87 0.65 Medium
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Predicted Structure (AlphaFold2)

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