F362812

General Info

Members Datasets Scaffolds Average Seq Length
251 200 218 381

Family's Representative Sequence

Representative Sequence 3300053154|Ga0500619_000061|Ga0500619_000061_3595_4818
Length 407
Sequence MTEVQKTVRQKQIAVRAMYMRGGTSKGVFFVREDLPAGVREDSAARDRFMLRVVGSPDRYGKHIDGMGAATSSTSKVVVINQSNRPDCDVDYLFGAVGIEEAVVDWTGNCGNLSSAVGPFSITRGLVAAPRDGMATVRIWQANIGKRIVAHVPMQDGEVAELGDFELDGVAFPSAEVQLEFLDPGADEEAGRGGMFPTGNTVDMLSVPDVGPVEATLINAGNPTVFVDAVAMGLTGTEHQAGINADAALLAKMEKIRAHATVVMGLAATPQEATEKRPHTPKISFVARPAAYVDSSGKPVKAEDTDLLARIVSMGKLHHAMTGTGAVAIAVASAIPGTLVHRVLAAAKGGARTDGNVRFGHPSGTLRVGAEAIERGGEWNVTKVVMSRSARRLMDGQVFVPVEVLAG

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2510065053 Pseudomonas sp. MOIL14HWK12:I1 Isolate Rhizosphere
3 2510065055 Pseudomonas sp. MOIL14HWK12:I2 Isolate Rhizosphere
4 2510065058 Pseudomonas oleovorans MOIL14HWK12 Isolate Rhizosphere
5 2599185214 Variovorax sp. NFACC26 Isolate Rhizoplane
6 2599185226 Variovorax sp. NFACC27 Isolate Rhizoplane
7 2599185227 Variovorax sp. NFACC28 Isolate Rhizoplane
8 2599185229 Variovorax sp. NFACC29 Isolate Endosphere
9 2773857672 Pseudomonas sp. 1766 Isolate Unclassified
10 2818991446 Variovorax sp. 1180 Isolate Unclassified
11 2839993093 Phyllobacterium endophyticum PEPV15 Isolate Unclassified
12 2899924645 Variovorax sp. 369 Isolate Unclassified
13 2904449895 Variovorax sp. 1763 Isolate Rhizosphere
14 2904479285 Comamonas sediminis 4487 Isolate Rhizosphere
15 2904541872 Variovorax sp. 1615 Isolate Rhizosphere
16 2917832318 Pseudomonas rhizoryzae RY24 Isolate Unclassified
17 2919125081 Pseudomonas psychrotolerans 1545 Isolate Rhizosphere
18 2928051484 Variovorax sp. 1133 Isolate Unclassified
19 2928064002 Variovorax sp. 1140 Isolate Rhizosphere
20 2928070936 Variovorax gossypii 1167 Isolate Unclassified
21 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
22 2929160207 Variovorax sp. R-72349 Hybrid assembly Isolate Unclassified
23 2941479691
24 2945934425 Paraburkholderia graminis W1I13 Isolate Rhizosphere
25 2974298342 Pseudomonas sp. SORGH_AS 211 Isolate Unclassified
26 2984499530 Pseudomonas sp. SORGH_AS199 Isolate Aerial Root
27 2984504281 Pseudomonas psychrotolerans SORGH_AS201 Isolate Aerial Root
28 2990703756 Paraburkholderia graminis SLBN-33 Isolate Rhizosphere
29 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
30 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
31 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
32 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
33 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
34 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
35 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
36 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
37 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
38 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
39 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
40 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
41 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
42 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
43 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
44 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
45 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
46 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
47 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
48 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
49 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
50 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
51 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
52 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
53 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
54 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
55 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
56 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
57 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
58 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
59 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
60 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
61 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
62 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
63 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
64 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
65 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
66 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
67 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
68 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
69 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
70 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
71 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
72 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
73 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
74 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
75 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
76 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
77 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
78 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
79 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
80 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
81 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
82 3300015683 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_F04 Metagenome Rhizosphere
83 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
84 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
85 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
86 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
87 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
88 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
89 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
90 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
91 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
92 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
111 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
112 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
113 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
114 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
115 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
116 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
117 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
118 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
119 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
120 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
121 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
122 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
123 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
124 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
125 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
126 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
127 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
128 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
129 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
130 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
131 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
132 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
133 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
134 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
135 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
136 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
137 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
138 3300042185 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 Metagenome Rhizosphere
139 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
140 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
141 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
142 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
143 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
144 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
145 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
146 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
147 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
148 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
149 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
150 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
151 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
152 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
153 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
154 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
155 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
156 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
157 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
158 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
159 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
160 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
161 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
162 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
163 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
164 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
165 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
166 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
167 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
168 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
169 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
170 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
171 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
172 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
173 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
174 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
175 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
176 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
177 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
178 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
179 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
180 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
181 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
182 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
183 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
184 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
185 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
186 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
187 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
188 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
189 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
190 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
191 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
192 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
193 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
194 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
195 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
196 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
197 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
198 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
199 641736151 Paraburkholderia graminis C4D1M Isolate Rhizoplane
200 8016728285 Pseudomonas psychrotolerans SORGH_AS 227 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 86.85
Metatranscriptomes 0
Isolates 13.15

Biome Distribution

Category Percentage (%)
Aerial Root 0.8
Bulb 0
Endosphere 18.33
Nodule 0
Rhizoplane 2.79
Rhizosphere 64.54
Stem 0
Stem Tuber 0
Unclassified 13.55

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_309191 2162886007 Bacteria 2199
2 JGI24740J21852_10006019 3300001979 Bacteria 5072
3 JGI24739J22299_10008599 3300001989 Bacteria 3808
4 JGI24739J22299_10016752 3300001989 Bacteria 2650
5 JGI25150J39212_1004045 3300002774 Bacteria 3321
6 JGI25151J46595_10001395 3300003187 Bacteria 16606
7 JGI25151J46595_10005459 3300003187 Bacteria 6566
8 rootL2_10002253 3300003322 Bacteria 15368
9 Ga0055537_1003611 3300003773 Bacteria 4705
10 Ga0055530_10000004 3300003791 Bacteria 231465
11 Ga0055540_1000017 3300003792 Bacteria 231465
12 Ga0065165_1002459 3300005262 Bacteria 15625
13 Ga0065704_10074412 3300005289 Bacteria 6287
14 Ga0070658_10004552 3300005327 Bacteria 11270
15 Ga0070680_100237122 3300005336 Bacteria 1541
16 Ga0070691_10063659 3300005341 Bacteria 1778
17 Ga0070661_100259277 3300005344 Bacteria 1344
18 Ga0070674_100088141 3300005356 Bacteria 2233
19 Ga0070674_100160150 3300005356 Bacteria 1707
20 Ga0070659_100265365 3300005366 Bacteria 1425
21 Ga0070667_100014451 3300005367 Bacteria 6523
22 Ga0070663_100022077 3300005455 Bacteria 4248
23 Ga0070662_100025395 3300005457 Bacteria 4090
24 Ga0070681_10020775 3300005458 Bacteria 6577
25 Ga0070679_100006386 3300005530 Bacteria 10981
26 Ga0070672_100017914 3300005543 Bacteria 5108
27 Ga0070665_100002979 3300005548 Bacteria 18287
28 Ga0070665_100324222 3300005548 Bacteria 1544
29 Ga0070664_100004167 3300005564 Bacteria 11616
30 Ga0068854_100053833 3300005578 Bacteria 2891
31 Ga0068852_100303292 3300005616 Bacteria 1546
32 Ga0081539_10009006 3300005985 Bacteria 8481
33 Ga0075368_10004475 3300006042 Bacteria 4743
34 Ga0075363_100000935 3300006048 Bacteria 10340
35 Ga0075363_100003462 3300006048 Bacteria 6714
36 Ga0075364_10147713 3300006051 Bacteria 1583
37 Ga0075432_10017848 3300006058 Bacteria 2420
38 Ga0075432_10031741 3300006058 Bacteria 1828
39 Ga0075369_10005816 3300006186 Bacteria 4633
40 Ga0075369_10069714 3300006186 Bacteria 1546
41 Ga0075369_10090220 3300006186 Bacteria 1367
42 Ga0075366_10005689 3300006195 Bacteria 6763
43 Ga0075366_10013406 3300006195 Bacteria 4666
44 Ga0075366_10146388 3300006195 Bacteria 1429
45 Ga0068871_100328573 3300006358 Bacteria 1348
46 Ga0075430_100002797 3300006846 Bacteria 14591
47 Ga0075429_100000702 3300006880 Bacteria 26160
48 Ga0105244_10000470 3300009036 Bacteria 36794
49 Ga0105244_10008828 3300009036 Bacteria 6258
50 Ga0105240_10019564 3300009093 Bacteria 9043
51 Ga0105243_10005498 3300009148 Bacteria 9881
52 Ga0105243_10021420 3300009148 Bacteria 4907
53 Ga0105242_10070055 3300009176 Bacteria 2906
54 Ga0105237_10080532 3300009545 Bacteria 3247
55 Ga0105238_10108146 3300009551 Bacteria 2762
56 Ga0105238_10161047 3300009551 Bacteria 2219
57 Ga0105246_10000099 3300011119 Bacteria 37789
58 Ga0157373_10000183 3300013100 Bacteria 51748
59 Ga0157373_10000224 3300013100 Bacteria 46252
60 Ga0157371_10009055 3300013102 Bacteria 7871
61 Ga0157371_10025809 3300013102 Bacteria 4277
62 Ga0157371_10050255 3300013102 Bacteria 2962
63 Ga0157369_10008749 3300013105 Bacteria 11595
64 Ga0157369_10075247 3300013105 Bacteria 3621
65 Ga0157369_10082498 3300013105 Bacteria 3439
66 Ga0157374_10199830 3300013296 Bacteria 1957
67 Ga0163162_10153177 3300013306 Bacteria 2424
68 Ga0157372_10008261 3300013307 Bacteria 11068
69 Ga0182008_10000774 3300014497 Bacteria 22409
70 Ga0157376_10001955 3300014969 Bacteria 13779
71 Ga0182006_1004802 3300015261 Bacteria 6577
72 Ga0182006_1013941 3300015261 Bacteria 3473
73 Ga0182007_10000976 3300015262 Bacteria 15704
74 Ga0183362_10002 3300015683 Bacteria 1432711
75 Ga0213872_10051598 3300021361 Bacteria 1867
76 Ga0207425_1005454 3300025245 Bacteria 3626
77 Ga0209129_1007491 3300025258 Bacteria 3240
78 Ga0209565_1000381 3300025263 Bacteria 37979
79 Ga0209675_1001754 3300025291 Bacteria 11902
80 Ga0209675_1001945 3300025291 Bacteria 11156
81 Ga0209676_1002018 3300025292 Bacteria 15969
82 Ga0209676_1008515 3300025292 Bacteria 4562
83 Ga0209025_1000049 3300025294 Bacteria 333459
84 Ga0209025_1004365 3300025294 Bacteria 12329
85 Ga0209050_1000037 3300025298 Bacteria 415612
86 Ga0209051_1000040 3300025303 Bacteria 315055
87 Ga0207705_10007445 3300025909 Bacteria 8050
88 Ga0207695_10198961 3300025913 Bacteria 1919
89 Ga0207660_10065795 3300025917 Bacteria 2620
90 Ga0207657_10095797 3300025919 Bacteria 2469
91 Ga0207644_10150609 3300025931 Bacteria 1800
92 Ga0207706_10002367 3300025933 Bacteria 18419
93 Ga0207686_10149933 3300025934 Bacteria 1622
94 Ga0207709_10001489 3300025935 Bacteria 16174
95 Ga0207669_10052747 3300025937 Bacteria 2445
96 Ga0207691_10008212 3300025940 Bacteria 10029
97 Ga0207679_10078376 3300025945 Bacteria 2517
98 Ga0207667_10061179 3300025949 Bacteria 3940
99 Ga0207667_10076078 3300025949 Bacteria 3484
100 Ga0207658_10026058 3300025986 Bacteria 4097
101 Ga0207639_10004039 3300026041 Bacteria 9902
102 Ga0207702_10032448 3300026078 Bacteria 4358
103 Ga0207683_10118843 3300026121 Bacteria 2371
104 Ga0207698_10026478 3300026142 Bacteria 4103
105 Ga0268266_10414923 3300028379 Bacteria 1275
106 Ga0307511_10005456 3300030521 Bacteria 12934
107 Ga0265325_10000026 3300031241 Bacteria 109937
108 Ga0265327_10001021 3300031251 Bacteria 39585
109 Ga0307509_10035949 3300031507 Bacteria 5429
110 Ga0307408_100001047 3300031548 Bacteria 21244
111 Ga0307408_100001694 3300031548 Bacteria 16201
112 Ga0307508_10122311 3300031616 Bacteria 2205
113 Ga0307406_10002373 3300031901 Bacteria 10251
114 Ga0307412_10000003 3300031911 Bacteria 659081
115 Ga0307416_100475396 3300032002 Bacteria 1308
116 Ga0373927_0040124 3300035695 Bacteria 3038
117 Ga0395899_0011462 3300037312 Bacteria 6786
118 Ga0395900_0006824 3300037418 Bacteria 11846
119 Ga0395900_0019918 3300037418 Bacteria 6839
120 Ga0395900_0093204 3300037418 Bacteria 3094
121 Ga0395898_0013109 3300037466 Bacteria 8547
122 Ga0395898_0147642 3300037466 Bacteria 2250
123 Ga0395905_0002882 3300037471 Bacteria 18791
124 Ga0395905_0004927 3300037471 Bacteria 13745
125 Ga0395905_0040373 3300037471 Bacteria 4377
126 Ga0395901_0013406 3300038443 Bacteria 8330
127 Ga0395901_0020394 3300038443 Bacteria 6785
128 Ga0395901_0029048 3300038443 Bacteria 5689
129 Ga0395901_0081218 3300038443 Bacteria 3386
130 Ga0436360_1064405 3300039438 Bacteria 11115
131 Ga0436361_0189721 3300039447 Bacteria 3340
132 Ga0439436_0000043 3300041404 Bacteria 37576
133 Ga0439447_027846 3300041407 Bacteria 1440
134 Ga0439466_0001631 3300041411 Bacteria 8774
135 Ga0439466_0016807 3300041411 Bacteria 2640
136 Ga0439465_0023198 3300041413 Bacteria 1953
137 Ga0439432_000520 3300042006 Bacteria 14325
138 Ga0439449_0000003 3300042007 Bacteria 94735
139 Ga0439452_006281 3300042010 Bacteria 3730
140 Ga0439462_0000020 3300042015 Bacteria 28308
141 Ga0450923_030543 3300042125 Bacteria 1096
142 Ga0450896_001417 3300042133 Bacteria 2946
143 Ga0450906_008303 3300042145 Bacteria 2014
144 Ga0450909_007243 3300042185 Bacteria 1603
145 Ga0439434_0008451 3300042435 Bacteria 3018
146 Ga0450918_000017 3300042531 Bacteria 32680
147 Ga0453684_0126259 3300044712 Bacteria 3078
148 Ga0451576_0205042 3300045051 Bacteria 2059
149 Ga0495617_000440 3300046452 Bacteria 22428
150 Ga0495627_002797 3300046453 Bacteria 8105
151 Ga0495638_0000454 3300046460 Bacteria 49141
152 Ga0495638_0005147 3300046460 Bacteria 9779
153 Ga0495650_0000482 3300046471 Bacteria 60936
154 Ga0495605_0000002 3300046474 Bacteria 522417
155 Ga0495605_0000037 3300046474 Bacteria 200004
156 Ga0495585_0019471 3300046492 Bacteria 3912
157 Ga0495596_0003780 3300046500 Bacteria 7557
158 Ga0495607_0000792 3300046501 Bacteria 29964
159 Ga0495606_0003247 3300046507 Bacteria 17433
160 Ga0495620_0000535 3300046515 Bacteria 24315
161 Ga0495632_0000582 3300046519 Bacteria 33892
162 Ga0495648_0003499 3300046524 Bacteria 13767
163 Ga0495597_0000087 3300046542 Bacteria 81275
164 Ga0495625_0003891 3300046660 Bacteria 14391
165 Ga0495660_0000093 3300046810 Bacteria 95425
166 Ga0495660_0039433 3300046810 Bacteria 2623
167 Ga0495676_0000096 3300047321 Bacteria 65991
168 Ga0495683_0001693 3300047323 Bacteria 14005
169 Ga0495687_004670 3300047443 Bacteria 9135
170 Ga0495673_0000384 3300047469 Bacteria 52386
171 Ga0495681_0000023 3300047470 Bacteria 154266
172 Ga0495681_0022167 3300047470 Bacteria 3405
173 Ga0495686_0000021 3300047472 Bacteria 426560
174 Ga0495686_0011079 3300047472 Bacteria 6375
175 Ga0496116_0000592 3300048919 Bacteria 48338
176 Ga0496116_0004480 3300048919 Bacteria 13301
177 Ga0496117_0007544 3300048920 Bacteria 10599
178 Ga0496117_0048614 3300048920 Bacteria 3027
179 Ga0496118_0000990 3300048921 Bacteria 44241
180 Ga0496118_0001743 3300048921 Bacteria 31613
181 Ga0496119_0000417 3300048922 Bacteria 58548
182 Ga0496120_0000812 3300048923 Bacteria 44729
183 Ga0496121_0000140 3300048924 Bacteria 162689
184 Ga0496122_0002201 3300048925 Bacteria 28467
185 Ga0496122_0009731 3300048925 Bacteria 10047
186 Ga0496123_0007443 3300048926 Bacteria 10310
187 Ga0496124_0001684 3300048927 Bacteria 31350
188 Ga0496124_0040127 3300048927 Bacteria 4051
189 Ga0496125_0000363 3300048928 Bacteria 85601
190 Ga0496125_0004260 3300048928 Bacteria 16654
191 Ga0496126_0016615 3300048929 Bacteria 7355
192 Ga0496126_0133046 3300048929 Bacteria 2147
193 Ga0496126_0136146 3300048929 Bacteria 2119
194 Ga0495678_000344 3300049459 Bacteria 48314
195 Ga0495682_0000462 3300049460 Bacteria 28046
196 Ga0501034_0002915 3300049571 Bacteria 19854
197 Ga0501047_0193032 3300049581 Bacteria 1899
198 Ga0501080_0023206 3300049742 Bacteria 5753
199 Ga0501044_0014717 3300049823 Bacteria 8435
200 nmdc:mga03n38_17088_c1 3300050490 Bacteria 2835
201 nmdc:mga00v17_145097_c1 3300050491 Bacteria 1523
202 nmdc:mga0yw44_66743_c1 3300050492 Bacteria 2221
203 nmdc:mga0k408_132420_c1 3300050493 Bacteria 1480
204 nmdc:mga06z11_46857_c1 3300050494 Bacteria 2193
205 nmdc:mga07m45_65613_c1 3300050496 Bacteria 2061
206 nmdc:mga09592_1868_c1 3300050508 Bacteria 16953
207 nmdc:mga0qj67_4085_c1 3300050509 Bacteria 10590
208 nmdc:mga08y16_335557_c1 3300050511 Bacteria 1554
209 nmdc:mga0sz30_31693_c1 3300050516 Bacteria 2188
210 nmdc:mga0sz30_937_c1 3300050516 Bacteria 10481
211 Ga0500646_0010243 3300053090 Bacteria 2405
212 Ga0500641_0003640 3300053096 Bacteria 5444
213 Ga0500594_0023827 3300053118 Bacteria 1555
214 Ga0500655_000312 3300053133 Bacteria 10990
215 Ga0500568_0006868 3300053139 Bacteria 5664
216 Ga0500604_0001125 3300053151 Bacteria 7419
217 Ga0500619_000061 3300053154 Bacteria 33071
218 Ga0500637_0086477 3300053178 Bacteria 1813

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300050496 nmdc:mga07m45_65613_c1 nmdc:mga07m45_65613_c1_1030_2034 323
2 3300042125 Ga0450923_030543 Ga0450923_030543_49_1062 326
3 3300042185 Ga0450909_007243 Ga0450909_007243_23_1036 326
4 3300013296 Ga0157374_10199830 Ga0157374_101998302 328
5 3300026121 Ga0207683_10118843 Ga0207683_101188431 329
6 3300041413 Ga0439465_0023198 Ga0439465_0023198_874_1920 337
7 iso_pu_bacteria 2839993093 2839998420 337
8 3300048929 Ga0496126_0136146 Ga0496126_0136146_858_2033 352
9 3300025292 Ga0209676_1008515 Ga0209676_10085156 353
10 3300053096 Ga0500641_0003640 Ga0500641_0003640_3255_4409 353
11 3300046500 Ga0495596_0003780 Ga0495596_0003780_586_1719 355
12 3300047323 Ga0495683_0001693 Ga0495683_0001693_7543_8676 355
13 3300048920 Ga0496117_0007544 Ga0496117_0007544_227_1360 355
14 3300048921 Ga0496118_0000990 Ga0496118_0000990_8333_9466 355
15 3300025919 Ga0207657_10095797 Ga0207657_100957972 358
16 3300013100 Ga0157373_10000224 Ga0157373_1000022419 360
17 3300046453 Ga0495627_002797 Ga0495627_002797_6241_7359 360
18 3300046460 Ga0495638_0000454 Ga0495638_0000454_18923_20041 360
19 3300046474 Ga0495605_0000002 Ga0495605_0000002_92612_93730 360
20 3300046501 Ga0495607_0000792 Ga0495607_0000792_17906_19024 360
21 3300046515 Ga0495620_0000535 Ga0495620_0000535_9596_10714 360
22 3300046660 Ga0495625_0003891 Ga0495625_0003891_6643_7761 360
23 3300049460 Ga0495682_0000462 Ga0495682_0000462_17782_18900 360
24 iso_pu_bacteria 2990703756 2990709606 362
25 3300031911 Ga0307412_10000003 Ga0307412_10000003381 363
26 3300050492 nmdc:mga0yw44_66743_c1 nmdc:mga0yw44_66743_c1_992_2119 364
27 3300003322 rootL2_10002253 rootL2_1000225316 365
28 3300031507 Ga0307509_10035949 Ga0307509_100359494 365
29 iso_pu_bacteria 2510065053 2510284189 365
30 iso_pu_bacteria 2510065055 2510293125 365
31 iso_pu_bacteria 2510065058 2510312628 365
32 3300006042 Ga0075368_10004475 Ga0075368_100044753 366
33 3300006048 Ga0075363_100003462 Ga0075363_1000034626 366
34 3300013105 Ga0157369_10008749 Ga0157369_1000874913 366
35 3300025945 Ga0207679_10078376 Ga0207679_100783762 366
36 3300050494 nmdc:mga06z11_46857_c1 nmdc:mga06z11_46857_c1_777_1919 366
37 iso_pu_bacteria 2917832318 2917836246 366
38 iso_pu_bacteria 2919125081 2919127625 366
39 iso_pu_bacteria 2984504281 2984507361 366
40 iso_pu_bacteria 8016728285 8016730526 366
41 3300031241 Ga0265325_10000026 Ga0265325_1000002658 367
42 3300053118 Ga0500594_0023827 Ga0500594_0023827_58_1212 367
43 iso_pu_bacteria 2773857672 2774130577 367
44 iso_pu_bacteria 2974298342 2974301607 367
45 iso_pu_bacteria 2984499530 2984504045 367
46 3300003791 Ga0055530_10000004 Ga0055530_1000000479 368
47 3300003792 Ga0055540_1000017 Ga0055540_1000017124 368
48 3300005367 Ga0070667_100014451 Ga0070667_1000144512 368
49 3300005543 Ga0070672_100017914 Ga0070672_1000179143 368
50 3300005548 Ga0070665_100002979 Ga0070665_1000029799 368
51 3300014969 Ga0157376_10001955 Ga0157376_100019556 368
52 3300025292 Ga0209676_1002018 Ga0209676_100201813 368
53 3300025298 Ga0209050_1000037 Ga0209050_100003779 368
54 3300025303 Ga0209051_1000040 Ga0209051_100004080 368
55 3300025940 Ga0207691_10008212 Ga0207691_100082124 368
56 3300025986 Ga0207658_10026058 Ga0207658_100260582 368
57 3300031616 Ga0307508_10122311 Ga0307508_101223112 368
58 3300046460 Ga0495638_0005147 Ga0495638_0005147_7847_8995 368
59 3300046471 Ga0495650_0000482 Ga0495650_0000482_11482_12630 368
60 3300046474 Ga0495605_0000037 Ga0495605_0000037_88795_89943 368
61 3300046492 Ga0495585_0019471 Ga0495585_0019471_1206_2354 368
62 3300046507 Ga0495606_0003247 Ga0495606_0003247_6562_7710 368
63 3300046519 Ga0495632_0000582 Ga0495632_0000582_10551_11699 368
64 3300046810 Ga0495660_0000093 Ga0495660_0000093_22536_23684 368
65 3300047321 Ga0495676_0000096 Ga0495676_0000096_48293_49441 368
66 3300047443 Ga0495687_004670 Ga0495687_004670_5029_6177 368
67 3300047470 Ga0495681_0000023 Ga0495681_0000023_107519_108667 368
68 3300053178 Ga0500637_0086477 Ga0500637_0086477_229_1383 368
69 3300009036 Ga0105244_10008828 Ga0105244_100088281 369
70 3300009148 Ga0105243_10021420 Ga0105243_100214202 369
71 3300013102 Ga0157371_10025809 Ga0157371_100258093 369
72 3300013105 Ga0157369_10075247 Ga0157369_100752471 369
73 iso_pu_bacteria 2928115317 2928118200 369
74 3300005356 Ga0070674_100088141 Ga0070674_1000881411 370
75 3300025931 Ga0207644_10150609 Ga0207644_101506092 370
76 3300025937 Ga0207669_10052747 Ga0207669_100527472 370
77 3300035695 Ga0373927_0040124 Ga0373927_0040124_12_1163 370
78 3300049571 Ga0501034_0002915 Ga0501034_0002915_4264_5421 370
79 3300049823 Ga0501044_0014717 Ga0501044_0014717_140_1297 370
80 3300005327 Ga0070658_10004552 Ga0070658_100045529 371
81 3300005336 Ga0070680_100237122 Ga0070680_1002371221 371
82 3300005341 Ga0070691_10063659 Ga0070691_100636591 371
83 3300005458 Ga0070681_10020775 Ga0070681_100207754 371
84 3300005530 Ga0070679_100006386 Ga0070679_1000063868 371
85 3300009093 Ga0105240_10019564 Ga0105240_100195647 371
86 3300009551 Ga0105238_10161047 Ga0105238_101610472 371
87 3300025909 Ga0207705_10007445 Ga0207705_100074457 371
88 3300025917 Ga0207660_10065795 Ga0207660_100657952 371
89 3300025949 Ga0207667_10076078 Ga0207667_100760781 371
90 3300044712 Ga0453684_0126259 Ga0453684_0126259_1671_2825 371
91 3300048919 Ga0496116_0000592 Ga0496116_0000592_40604_41752 371
92 3300048920 Ga0496117_0048614 Ga0496117_0048614_1755_2903 371
93 3300048922 Ga0496119_0000417 Ga0496119_0000417_43301_44449 371
94 3300048923 Ga0496120_0000812 Ga0496120_0000812_42446_43594 371
95 3300048924 Ga0496121_0000140 Ga0496121_0000140_85840_86988 371
96 3300048925 Ga0496122_0002201 Ga0496122_0002201_2922_4070 371
97 3300048926 Ga0496123_0007443 Ga0496123_0007443_2645_3793 371
98 3300048927 Ga0496124_0001684 Ga0496124_0001684_23250_24398 371
99 3300048928 Ga0496125_0000363 Ga0496125_0000363_77867_79015 371
100 3300048929 Ga0496126_0133046 Ga0496126_0133046_795_1943 371
101 3300049742 Ga0501080_0023206 Ga0501080_0023206_4133_5296 371
102 3300005548 Ga0070665_100324222 Ga0070665_1003242221 372
103 3300005985 Ga0081539_10009006 Ga0081539_100090063 372
104 3300006186 Ga0075369_10005816 Ga0075369_100058163 372
105 3300006186 Ga0075369_10069714 Ga0075369_100697142 372
106 3300006195 Ga0075366_10146388 Ga0075366_101463881 372
107 3300013100 Ga0157373_10000183 Ga0157373_1000018325 372
108 3300013102 Ga0157371_10009055 Ga0157371_100090557 372
109 3300037312 Ga0395899_0011462 Ga0395899_0011462_1710_2876 372
110 3300037418 Ga0395900_0006824 Ga0395900_0006824_7997_9163 372
111 3300037466 Ga0395898_0147642 Ga0395898_0147642_952_2118 372
112 3300038443 Ga0395901_0013406 Ga0395901_0013406_2320_3486 372
113 3300038443 Ga0395901_0081218 Ga0395901_0081218_2068_3234 372
114 3300045051 Ga0451576_0205042 Ga0451576_0205042_635_1792 372
115 3300048925 Ga0496122_0009731 Ga0496122_0009731_447_1610 372
116 3300049581 Ga0501047_0193032 Ga0501047_0193032_121_1281 372
117 3300050493 nmdc:mga0k408_132420_c1 nmdc:mga0k408_132420_c1_160_1317 372
118 3300050511 nmdc:mga08y16_335557_c1 nmdc:mga08y16_335557_c1_299_1456 372
119 3300050516 nmdc:mga0sz30_31693_c1 nmdc:mga0sz30_31693_c1_541_1698 372
120 3300050516 nmdc:mga0sz30_937_c1 nmdc:mga0sz30_937_c1_1601_2758 372
121 iso_pu_bacteria 2945934425 2945936485 372
122 iso_pu_bacteria 641736151 642425289 372
123 3300021361 Ga0213872_10051598 Ga0213872_100515983 373
124 3300031251 Ga0265327_10001021 Ga0265327_100010217 373
125 3300039438 Ga0436360_1064405 Ga0436360_1064405_9740_10912 373
126 3300039447 Ga0436361_0189721 Ga0436361_0189721_729_1901 373
127 3300047472 Ga0495686_0011079 Ga0495686_0011079_4395_5567 373
128 3300001989 JGI24739J22299_10016752 JGI24739J22299_100167523 374
129 3300013306 Ga0163162_10153177 Ga0163162_101531771 374
130 3300037418 Ga0395900_0093204 Ga0395900_0093204_438_1601 374
131 3300037471 Ga0395905_0040373 Ga0395905_0040373_2927_4090 374
132 3300047472 Ga0495686_0000021 Ga0495686_0000021_273348_274514 374
133 3300048929 Ga0496126_0016615 Ga0496126_0016615_349_1542 374
134 3300053090 Ga0500646_0010243 Ga0500646_0010243_431_1654 374
135 3300053133 Ga0500655_000312 Ga0500655_000312_5703_6926 374
136 3300053139 Ga0500568_0006868 Ga0500568_0006868_2843_4066 374
137 3300053151 Ga0500604_0001125 Ga0500604_0001125_3678_4901 374
138 3300006846 Ga0075430_100002797 Ga0075430_10000279710 375
139 3300006880 Ga0075429_100000702 Ga0075429_10000070216 375
140 3300050508 nmdc:mga09592_1868_c1 nmdc:mga09592_1868_c1_7301_8470 375
141 3300050509 nmdc:mga0qj67_4085_c1 nmdc:mga0qj67_4085_c1_4496_5665 375
142 iso_pu_bacteria 2904479285 2904482977 376
143 3300006058 Ga0075432_10017848 Ga0075432_100178482 377
144 3300046452 Ga0495617_000440 Ga0495617_000440_16020_17192 377
145 3300046524 Ga0495648_0003499 Ga0495648_0003499_1527_2699 377
146 3300046542 Ga0495597_0000087 Ga0495597_0000087_36399_37589 377
147 3300046810 Ga0495660_0039433 Ga0495660_0039433_32_1204 377
148 3300047469 Ga0495673_0000384 Ga0495673_0000384_2000_3172 377
149 3300047470 Ga0495681_0022167 Ga0495681_0022167_870_2042 377
150 3300049459 Ga0495678_000344 Ga0495678_000344_45280_46452 377
151 3300002774 JGI25150J39212_1004045 JGI25150J39212_10040452 379
152 3300003187 JGI25151J46595_10005459 JGI25151J46595_100054597 379
153 3300003773 Ga0055537_1003611 Ga0055537_10036114 379
154 3300005262 Ga0065165_1002459 Ga0065165_10024597 379
155 3300025245 Ga0207425_1005454 Ga0207425_10054544 379
156 3300025258 Ga0209129_1007491 Ga0209129_10074912 379
157 3300025263 Ga0209565_1000381 Ga0209565_100038130 379
158 3300025291 Ga0209675_1001945 Ga0209675_10019453 379
159 3300025294 Ga0209025_1004365 Ga0209025_10043657 379
160 3300030521 Ga0307511_10005456 Ga0307511_1000545611 379
161 3300050491 nmdc:mga00v17_145097_c1 nmdc:mga00v17_145097_c1_134_1312 379
162 iso_pu_bacteria 2599185214 2599623784 379
163 iso_pu_bacteria 2599185214 2599627826 379
164 iso_pu_bacteria 2599185226 2599671597 379
165 iso_pu_bacteria 2599185226 2599677516 379
166 iso_pu_bacteria 2599185227 2599681390 379
167 iso_pu_bacteria 2599185227 2599685456 379
168 iso_pu_bacteria 2599185229 2599693207 379
169 iso_pu_bacteria 2599185229 2599697304 379
170 iso_pu_bacteria 2904541872 2904542189 379
171 iso_pu_bacteria 2928070936 2928077147 379
172 iso_pu_bacteria 2929160207 2929167474 379
173 iso_pu_bacteria 2941479691 2941480611 379
174 3300003187 JGI25151J46595_10001395 JGI25151J46595_1000139517 380
175 3300025294 Ga0209025_1000049 Ga0209025_1000049105 380
176 iso_pu_bacteria 2818991446 2819602569 380
177 iso_pu_bacteria 2899924645 2899930852 380
178 iso_pu_bacteria 2904449895 2904450017 380
179 iso_pu_bacteria 2928051484 2928055557 380
180 iso_pu_bacteria 2928064002 2928069660 380
181 3300006195 Ga0075366_10005689 Ga0075366_100056893 381
182 3300037471 Ga0395905_0002882 Ga0395905_0002882_13431_14618 381
183 3300037471 Ga0395905_0004927 Ga0395905_0004927_3756_4943 381
184 3300038443 Ga0395901_0029048 Ga0395901_0029048_494_1681 381
185 3300005356 Ga0070674_100160150 Ga0070674_1001601502 382
186 3300006048 Ga0075363_100000935 Ga0075363_1000009352 382
187 3300006051 Ga0075364_10147713 Ga0075364_101477132 382
188 3300006058 Ga0075432_10031741 Ga0075432_100317412 382
189 3300006186 Ga0075369_10090220 Ga0075369_100902202 382
190 3300006195 Ga0075366_10013406 Ga0075366_100134062 382
191 3300028379 Ga0268266_10414923 Ga0268266_104149231 382
192 3300037418 Ga0395900_0019918 Ga0395900_0019918_3006_4199 382
193 3300037466 Ga0395898_0013109 Ga0395898_0013109_5331_6524 382
194 3300038443 Ga0395901_0020394 Ga0395901_0020394_2559_3752 382
195 3300050490 nmdc:mga03n38_17088_c1 nmdc:mga03n38_17088_c1_538_1728 382
196 3300053154 Ga0500619_000061 Ga0500619_000061_3595_4818 382
197 2162886007 SwRhRL2b_contig_309191 SwRhRL2b_0591.00003550 384
198 3300001979 JGI24740J21852_10006019 JGI24740J21852_100060194 384
199 3300001989 JGI24739J22299_10008599 JGI24739J22299_100085992 384
200 3300005289 Ga0065704_10074412 Ga0065704_100744123 384
201 3300005344 Ga0070661_100259277 Ga0070661_1002592771 384
202 3300005366 Ga0070659_100265365 Ga0070659_1002653652 384
203 3300005455 Ga0070663_100022077 Ga0070663_1000220773 384
204 3300005457 Ga0070662_100025395 Ga0070662_1000253953 384
205 3300005564 Ga0070664_100004167 Ga0070664_1000041672 384
206 3300005578 Ga0068854_100053833 Ga0068854_1000538332 384
207 3300005616 Ga0068852_100303292 Ga0068852_1003032922 384
208 3300006358 Ga0068871_100328573 Ga0068871_1003285731 384
209 3300009036 Ga0105244_10000470 Ga0105244_100004703 384
210 3300009148 Ga0105243_10005498 Ga0105243_100054986 384
211 3300009176 Ga0105242_10070055 Ga0105242_100700552 384
212 3300009545 Ga0105237_10080532 Ga0105237_100805323 384
213 3300009551 Ga0105238_10108146 Ga0105238_101081463 384
214 3300011119 Ga0105246_10000099 Ga0105246_100000992 384
215 3300013102 Ga0157371_10050255 Ga0157371_100502553 384
216 3300013105 Ga0157369_10082498 Ga0157369_100824982 384
217 3300013307 Ga0157372_10008261 Ga0157372_100082612 384
218 3300014497 Ga0182008_10000774 Ga0182008_100007746 384
219 3300015261 Ga0182006_1004802 Ga0182006_10048022 384
220 3300015261 Ga0182006_1013941 Ga0182006_10139412 384
221 3300015262 Ga0182007_10000976 Ga0182007_100009767 384
222 3300015683 Ga0183362_10002 Ga0183362_10002813 384
223 3300025291 Ga0209675_1001754 Ga0209675_10017543 384
224 3300025913 Ga0207695_10198961 Ga0207695_101989612 384
225 3300025933 Ga0207706_10002367 Ga0207706_1000236714 384
226 3300025934 Ga0207686_10149933 Ga0207686_101499332 384
227 3300025935 Ga0207709_10001489 Ga0207709_1000148913 384
228 3300025949 Ga0207667_10061179 Ga0207667_100611792 384
229 3300026041 Ga0207639_10004039 Ga0207639_100040394 384
230 3300026078 Ga0207702_10032448 Ga0207702_100324482 384
231 3300026142 Ga0207698_10026478 Ga0207698_100264782 384
232 3300031548 Ga0307408_100001047 Ga0307408_10000104711 384
233 3300031548 Ga0307408_100001694 Ga0307408_10000169413 384
234 3300031901 Ga0307406_10002373 Ga0307406_100023732 384
235 3300032002 Ga0307416_100475396 Ga0307416_1004753961 384
236 3300041404 Ga0439436_0000043 Ga0439436_0000043_23211_24398 384
237 3300041407 Ga0439447_027846 Ga0439447_027846_31_1218 384
238 3300041411 Ga0439466_0001631 Ga0439466_0001631_2420_3607 384
239 3300041411 Ga0439466_0016807 Ga0439466_0016807_1350_2537 384
240 3300042006 Ga0439432_000520 Ga0439432_000520_12230_13417 384
241 3300042007 Ga0439449_0000003 Ga0439449_0000003_7265_8452 384
242 3300042010 Ga0439452_006281 Ga0439452_006281_1562_2749 384
243 3300042015 Ga0439462_0000020 Ga0439462_0000020_14934_16121 384
244 3300042133 Ga0450896_001417 Ga0450896_001417_361_1548 384
245 3300042145 Ga0450906_008303 Ga0450906_008303_230_1417 384
246 3300042435 Ga0439434_0008451 Ga0439434_0008451_1706_2893 384
247 3300042531 Ga0450918_000017 Ga0450918_000017_2855_4042 384
248 3300048919 Ga0496116_0004480 Ga0496116_0004480_1472_2659 384
249 3300048921 Ga0496118_0001743 Ga0496118_0001743_1725_2912 384
250 3300048927 Ga0496124_0040127 Ga0496124_0040127_2750_3937 384
251 3300048928 Ga0496125_0004260 Ga0496125_0004260_6839_8026 384

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04303

PrpF

PrpF protein

12

401

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
5k87-assembly1.cif.gz_A crystal structure of malonate bound to methylaconitate isomerase prpf from shewanella oneidensis 0.926 3 377
2pvz-assembly1.cif.gz_B crystal structure of methylaconitate isomerase prpf from shewanella oneidensis 0.9209 3 377
5k87-assembly1.cif.gz_B crystal structure of malonate bound to methylaconitate isomerase prpf from shewanella oneidensis 0.9115 1 384
5k87-assembly1.cif.gz_B crystal structure of malonate bound to methylaconitate isomerase prpf from shewanella oneidensis 0.9092 1 384
5k87-assembly1.cif.gz_A crystal structure of malonate bound to methylaconitate isomerase prpf from shewanella oneidensis 0.9027 3 377
ID Description Score Start End Superfamily
2pvzA01 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9395 3 173 3.10.310.10
af_P0AAV8_1_178_3.10.310.10 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9079 1 177 3.10.310.10
3g7kB01 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9019 2 172 3.10.310.10
2h9fA02 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.8895 182 360 3.10.310.10
3g7kB02 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.8617 185 354 3.10.310.10
ID Description Score Start End GO Terms
AF-A0A4R9WPK9-F1-model_v4 Putative methylaconitate Delta-isomerase PrpF 0.9808 62 152 GO:0016853
AF-A0A4R5JBR7-F1-model_v4 deleted 0.9758 68 139
AF-A0A227J1S3-F1-model_v4 Uncharacterized protein 0.9632 212 302 GO:0016853
AF-A0A519F3A8-F1-model_v4 deleted 0.9493 1 148
AF-A0A2T4DA12-F1-model_v4 deleted 0.9491 3 141

Feature Viewer

pLDDT pTM Quality
82.03 0.83 High
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Predicted Structure (AlphaFold2)

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