F360922

General Info

Members Datasets Scaffolds Average Seq Length
249 120 498 200

Family's Representative Sequence

Representative Sequence 3300039110|Ga0400487_53818|Ga0400487_53818_506_1192
Length 228
Sequence MRGAIYQHSWPKNIIQFLKKTIGNINIIMTHYPPSMVNLIKQLSRLPGIGEKTAERLTMHILRESSHDVTQLAQSILDVKKKLRLCRQCFALSDTELCRICNNPNRDASKLCVVEQSVDMASIEKSGSFNGLFHILGGALAPMEGIGPEQIRVQEMVKRITNDSSIKEVILATGTNVEGESTASYIAQILAQYSVKVTRIASGVPIGGDLKYVDRMTLKRALEKRHAF

Samples

Sample ID Description Type Environment
1 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
2 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
3 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
6 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
7 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
8 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
9 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
10 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
11 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
12 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
13 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
14 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
15 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
16 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
17 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
18 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
19 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
20 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
21 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
22 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
25 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
27 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
28 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
29 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
30 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
31 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
32 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
33 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
34 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
35 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
36 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
37 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
38 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
39 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
40 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
41 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
42 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
43 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
44 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
45 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
46 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
47 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
48 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
49 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
50 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
51 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
52 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
53 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
54 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
55 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
56 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
57 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
58 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
59 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
60 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
61 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
62 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
63 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
64 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
65 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
66 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
67 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
68 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
69 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
70 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
71 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
72 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
73 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
74 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
75 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
76 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
77 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
78 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
79 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
80 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
81 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
82 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
83 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
84 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
85 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
86 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
87 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
88 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
89 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
90 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
91 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
92 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
93 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
94 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
95 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
96 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
97 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
98 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
99 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
100 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
102 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
103 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
104 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
105 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
106 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
107 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
108 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
109 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
110 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
111 2509276018 Mesorhizobium ciceri CMG6 Isolate Nodule
112 2558860983 Allorhizobium undicola ATCC 700741 Isolate Rhizoplane
113 2643221550 Mesorhizobium sp. Root552 Isolate Unclassified
114 2874168670 Mesorhizobium kowhaii Ach-343 Isolate Nodule
115 2891048133 Martelella lutilitoris GH2-6 Isolate Rhizosphere
116 2937843397 Mesorhizobium xinjiangense lm94 Isolate Rhizosphere
117 2995392953 Martelella limonii NBRC 109441 Isolate Unclassified
118 8004695233 Mesorhizobium sp. M7A.F.Ca.US.001.01.1.1 Isolate Nodule
119 8007371054 Clostridium sp. YIM B02515 Isolate Unclassified
120 8007375930 Clostridium sp. YIM B02565 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.16
Metatranscriptomes 4.82
Isolates 4.02

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.42
Nodule 3.61
Rhizoplane 0.8
Rhizosphere 74.7
Stem 0
Stem Tuber 0
Unclassified 11.65

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0400487_53818 3300039110 Bacteria 1302
2 Ga0006562J51391_1018261 3300003578 Bacteria 4475
3 Ga0055542_1000625 3300003762 Bacteria 29738
4 Ga0068869_100725779 3300005334 Bacteria 849
5 Ga0070713_100141990 3300005436 Bacteria 2128
6 Ga0070711_100123477 3300005439 Bacteria 1919
7 Ga0070699_100912124 3300005518 Unclassified 805
8 Ga0068853_100783546 3300005539 Unclassified 912
9 Ga0068856_100962135 3300005614 Unclassified 872
10 Ga0081455_10020788 3300005937 Bacteria 6170
11 Ga0081539_10099216 3300005985 Bacteria 1488
12 Ga0070716_100049017 3300006173 Bacteria 2391
13 Ga0075366_10228525 3300006195 Bacteria 1133
14 Ga0075428_100758708 3300006844 Bacteria 1032
15 Ga0079104_1000181 3300006946 Bacteria 89820
16 Ga0079104_1003722 3300006946 Bacteria 6909
17 Ga0079104_1017715 3300006946 Bacteria 2042
18 Ga0105245_10414543 3300009098 Bacteria 1349
19 Ga0105239_10246878 3300010375 Bacteria 2004
20 Ga0213874_10056033 3300021377 Bacteria 1223
21 Ga0224572_1014693 3300024225 Unclassified 1496
22 Ga0228598_1003014 3300024227 Unclassified 3652
23 Ga0209025_1064754 3300025294 Bacteria 1340
24 Ga0207694_10356254 3300025924 Bacteria 1212
25 Ga0207641_10091804 3300026088 Bacteria 2658
26 Ga0209281_1000241 3300027111 Bacteria 110257
27 Ga0209281_1000302 3300027111 Bacteria 89411
28 Ga0209281_1022663 3300027111 Bacteria 1200
29 Ga0209588_1001519 3300027671 Bacteria 6117
30 Ga0265337_1007466 3300028556 Unclassified 4089
31 Ga0265337_1007945 3300028556 Unclassified 3912
32 Ga0265326_10000347 3300028558 Bacteria 19628
33 Ga0265319_1000134 3300028563 Bacteria 55347
34 Ga0265319_1002518 3300028563 Bacteria 9933
35 Ga0265334_10000477 3300028573 Bacteria 20678
36 Ga0265334_10036976 3300028573 Bacteria 1926
37 Ga0265318_10001861 3300028577 Bacteria 11883
38 Ga0265318_10007494 3300028577 Unclassified 4929
39 Ga0265318_10046200 3300028577 Unclassified 1644
40 Ga0265323_10000174 3300028653 Bacteria 38517
41 Ga0265322_10000212 3300028654 Bacteria 25657
42 Ga0265322_10011633 3300028654 Bacteria 2548
43 Ga0265336_10002401 3300028666 Bacteria 7755
44 Ga0265336_10052934 3300028666 Bacteria 1224
45 Ga0307515_10001299 3300028794 Bacteria 56720
46 Ga0265338_10001182 3300028800 Bacteria 43068
47 Ga0265338_10003941 3300028800 Bacteria 20450
48 Ga0265338_10016804 3300028800 Bacteria 7926
49 Ga0265338_10017727 3300028800 Bacteria 7657
50 Ga0265324_10000703 3300029957 Bacteria 22290
51 Ga0265324_10004480 3300029957 Bacteria 6286
52 Ga0265324_10083957 3300029957 Unclassified 1084
53 Ga0265762_1013254 3300030760 Unclassified 1483
54 Ga0265770_1001864 3300030878 Unclassified 2872
55 Ga0265770_1035620 3300030878 Bacteria 852
56 Ga0265760_10019363 3300031090 Bacteria 1961
57 Ga0265330_10000578 3300031235 Bacteria 23800
58 Ga0265330_10094082 3300031235 Bacteria 1285
59 Ga0265332_10000197 3300031238 Bacteria 48807
60 Ga0265328_10002212 3300031239 Bacteria 8768
61 Ga0265320_10005377 3300031240 Bacteria 8231
62 Ga0265320_10006610 3300031240 Bacteria 7285
63 Ga0265325_10017720 3300031241 Unclassified 3956
64 Ga0265329_10002896 3300031242 Bacteria 7634
65 Ga0265340_10005290 3300031247 Bacteria 7167
66 Ga0265339_10002346 3300031249 Bacteria 13610
67 Ga0265339_10032576 3300031249 Bacteria 2939
68 Ga0265331_10002159 3300031250 Bacteria 13526
69 Ga0265316_10004578 3300031344 Bacteria 13722
70 Ga0265316_10008213 3300031344 Bacteria 9714
71 Ga0265316_10280535 3300031344 Bacteria 1217
72 Ga0307513_10277029 3300031456 Bacteria 1457
73 Ga0265313_10007803 3300031595 Bacteria 7228
74 Ga0265313_10045628 3300031595 Bacteria 2132
75 Ga0316575_10000799 3300031665 Bacteria 9545
76 Ga0316575_10006944 3300031665 Bacteria 4097
77 Ga0316575_10008852 3300031665 Bacteria 3673
78 Ga0316575_10019351 3300031665 Bacteria 2602
79 Ga0316575_10024052 3300031665 Bacteria 2356
80 Ga0316575_10160285 3300031665 Bacteria 930
81 Ga0316579_10001008 3300031691 Bacteria 9894
82 Ga0316579_10015203 3300031691 Bacteria 3337
83 Ga0316579_10030560 3300031691 Bacteria 2462
84 Ga0316579_10071660 3300031691 Unclassified 1642
85 Ga0316579_10142779 3300031691 Bacteria 1154
86 Ga0316579_10334609 3300031691 Bacteria 732
87 Ga0265314_10000839 3300031711 Bacteria 36344
88 Ga0265314_10144316 3300031711 Bacteria 1468
89 Ga0265342_10005518 3300031712 Bacteria 9612
90 Ga0265342_10024768 3300031712 Unclassified 3783
91 Ga0316576_10001282 3300031727 Bacteria 13360
92 Ga0316576_10012594 3300031727 Bacteria 5594
93 Ga0316576_10016067 3300031727 Bacteria 5045
94 Ga0316576_10073309 3300031727 Bacteria 2529
95 Ga0316576_10146235 3300031727 Unclassified 1780
96 Ga0316576_10163755 3300031727 Bacteria 1678
97 Ga0316578_10001741 3300031728 Bacteria 9111
98 Ga0316578_10008136 3300031728 Bacteria 5314
99 Ga0316578_10019780 3300031728 Bacteria 3713
100 Ga0316578_10036678 3300031728 Bacteria 2822
101 Ga0316578_10060819 3300031728 Bacteria 2224
102 Ga0316578_10064675 3300031728 Bacteria 2159
103 Ga0316578_10121957 3300031728 Bacteria 1567
104 Ga0316578_10255357 3300031728 Bacteria 1051
105 Ga0316578_10354873 3300031728 Bacteria 872
106 Ga0307516_10066405 3300031730 Bacteria 3479
107 Ga0316577_10006688 3300031733 Bacteria 6110
108 Ga0316577_10009466 3300031733 Bacteria 5242
109 Ga0316577_10012170 3300031733 Bacteria 4683
110 Ga0316577_10022713 3300031733 Bacteria 3483
111 Ga0316577_10028204 3300031733 Bacteria 3131
112 Ga0316577_10057614 3300031733 Bacteria 2169
113 Ga0316577_10072417 3300031733 Bacteria 1923
114 Ga0316577_10203855 3300031733 Bacteria 1118
115 Ga0307416_101157120 3300032002 Bacteria 879
116 Ga0316583_10000132 3300032133 Bacteria 17554
117 Ga0316583_10005560 3300032133 Bacteria 4523
118 Ga0316583_10007499 3300032133 Bacteria 3927
119 Ga0316583_10013851 3300032133 Bacteria 2910
120 Ga0316583_10099158 3300032133 Unclassified 1016
121 Ga0316583_10156904 3300032133 Unclassified 792
122 Ga0316585_10000297 3300032137 Bacteria 11020
123 Ga0316585_10007494 3300032137 Bacteria 3148
124 Ga0316585_10040908 3300032137 Bacteria 1476
125 Ga0316585_10042923 3300032137 Unclassified 1443
126 Ga0316585_10058616 3300032137 Bacteria 1241
127 Ga0316580_10001411 3300032139 Bacteria 6261
128 Ga0316580_10013427 3300032139 Unclassified 2497
129 Ga0316580_10014436 3300032139 Bacteria 2412
130 Ga0316593_10033950 3300032168 Bacteria 1672
131 Ga0316592_1040798 3300033524 Bacteria 1027
132 Ga0316586_1053455 3300033527 Bacteria 725
133 Ga0316588_1037773 3300033528 Bacteria 1149
134 Ga0316596_1002102 3300033541 Bacteria 4202
135 Ga0316596_1035759 3300033541 Bacteria 1298
136 Ga0316596_1053203 3300033541 Unclassified 1074
137 Ga0373954_0197133 3300035118 Bacteria 989
138 Ga0316574_0000134 3300035398 Bacteria 23412
139 Ga0316574_0004294 3300035398 Bacteria 7444
140 Ga0316574_0051266 3300035398 Bacteria 2572
141 Ga0316574_0061094 3300035398 Bacteria 2366
142 Ga0316574_0073403 3300035398 Bacteria 2163
143 Ga0316574_0082790 3300035398 Bacteria 2039
144 Ga0316574_0085040 3300035398 Bacteria 2012
145 Ga0316574_0121001 3300035398 Bacteria 1681
146 Ga0373927_0000057 3300035695 Bacteria 80218
147 Ga0373927_0189881 3300035695 Bacteria 1348
148 Ga0316582_0000580 3300036647 Bacteria 14143
149 Ga0316582_0001092 3300036647 Bacteria 11437
150 Ga0316582_0002007 3300036647 Bacteria 9340
151 Ga0316582_0007615 3300036647 Bacteria 5774
152 Ga0316582_0033153 3300036647 Bacteria 3169
153 Ga0316582_0061327 3300036647 Bacteria 2412
154 Ga0316582_0071853 3300036647 Bacteria 2242
155 Ga0316582_0093745 3300036647 Bacteria 1980
156 Ga0316582_0097511 3300036647 Unclassified 1943
157 Ga0316582_0137517 3300036647 Bacteria 1645
158 Ga0316582_0146483 3300036647 Bacteria 1594
159 Ga0316582_0161555 3300036647 Unclassified 1518
160 Ga0316582_0200724 3300036647 Bacteria 1360
161 Ga0316584_0000316 3300036712 Bacteria 24730
162 Ga0316584_0001924 3300036712 Bacteria 12932
163 Ga0316584_0005887 3300036712 Bacteria 8275
164 Ga0316584_0020968 3300036712 Bacteria 4746
165 Ga0316584_0025514 3300036712 Bacteria 4336
166 Ga0316584_0029230 3300036712 Bacteria 4068
167 Ga0316584_0035097 3300036712 Unclassified 3720
168 Ga0316584_0059508 3300036712 Bacteria 2860
169 Ga0316584_0066645 3300036712 Bacteria 2698
170 Ga0316584_0084698 3300036712 Bacteria 2374
171 Ga0316584_0147899 3300036712 Bacteria 1750
172 Ga0316584_0185228 3300036712 Bacteria 1540
173 Ga0316584_0205377 3300036712 Bacteria 1452
174 Ga0373925_0003701 3300037068 Bacteria 11743
175 Ga0395899_0005988 3300037312 Bacteria 9445
176 Ga0395900_0004169 3300037418 Bacteria 15378
177 Ga0395905_0000927 3300037471 Bacteria 37843
178 Ga0395905_0041608 3300037471 Bacteria 4312
179 Ga0395905_0114898 3300037471 Bacteria 2529
180 Ga0316581_0001273 3300037588 Bacteria 5592
181 Ga0316581_0006076 3300037588 Bacteria 3180
182 Ga0316581_0035227 3300037588 Bacteria 1517
183 Ga0316581_0166205 3300037588 Unclassified 680
184 Ga0400484_15096 3300038725 Bacteria 18863
185 Ga0400484_34488 3300038725 Bacteria 2480
186 Ga0400484_43074 3300038725 Bacteria 9083
187 Ga0400490_34083 3300038726 Bacteria 3476
188 Ga0400490_57637 3300038726 Bacteria 50105
189 Ga0400491_00572 3300038727 Bacteria 2293
190 Ga0400491_10369 3300038727 Bacteria 3593
191 Ga0400485_11713 3300038735 Bacteria 10318
192 Ga0400485_13631 3300038735 Bacteria 18840
193 Ga0400485_14169 3300038735 Bacteria 19808
194 Ga0400488_09713 3300038741 Unclassified 2174
195 Ga0400488_16326 3300038741 Bacteria 17525
196 Ga0400488_41543 3300038741 Bacteria 4596
197 Ga0400486_00558 3300038742 Bacteria 86624
198 Ga0400486_25675 3300038742 Bacteria 18299
199 Ga0400486_31626 3300038742 Bacteria 26816
200 Ga0400483_015976 3300039062 Bacteria 1972
201 Ga0400483_018802 3300039062 Bacteria 8245
202 Ga0400483_068831 3300039062 Bacteria 2424
203 Ga0400483_104683 3300039062 Unclassified 4479
204 Ga0400483_180148 3300039062 Bacteria 1491
205 Ga0400483_292323 3300039062 Unclassified 1480
206 Ga0400489_16415 3300039093 Bacteria 20492
207 Ga0400489_71101 3300039093 Bacteria 95670
208 Ga0400489_75741 3300039093 Bacteria 16615
209 Ga0400489_81762 3300039093 Bacteria 12205
210 Ga0400487_03051 3300039110 Bacteria 5386
211 Ga0400487_09272 3300039110 Bacteria 28510
212 Ga0451853_1620654 3300041512 Bacteria 779
213 Ga0466964_0090737 3300044706 Bacteria 1329
214 Ga0453684_0004279 3300044712 Bacteria 30464
215 Ga0453684_0025512 3300044712 Bacteria 8577
216 Ga0495603_0134691 3300046455 Bacteria 1438
217 Ga0495638_0014827 3300046460 Bacteria 5255
218 Ga0495638_0345899 3300046460 Bacteria 786
219 Ga0495620_0014140 3300046515 Bacteria 4065
220 Ga0495654_0044954 3300046530 Bacteria 2180
221 Ga0495654_0147492 3300046530 Bacteria 1043
222 Ga0495672_0012810 3300047320 Bacteria 5826
223 Ga0495680_0226484 3300047322 Bacteria 1333
224 Ga0495602_0782647 3300048088 Bacteria 642
225 Ga0496109_0008997 3300048912 Bacteria 8503
226 Ga0496122_0018723 3300048925 Bacteria 6374
227 Ga0496126_0000533 3300048929 Bacteria 73537
228 Ga0501031_0035095 3300049568 Bacteria 3271
229 Ga0501034_0009570 3300049571 Bacteria 10141
230 Ga0501034_0017415 3300049571 Bacteria 7369
231 nmdc:mga0k408_514399_c1 3300050493 Bacteria 709
232 Ga0500643_002773 3300053087 Bacteria 8770
233 Ga0500644_0095156 3300053088 Bacteria 1122
234 Ga0500556_0110233 3300053104 Bacteria 1067
235 Ga0500559_0004087 3300053136 Bacteria 6998
236 Ga0500568_0035210 3300053139 Bacteria 2044
237 Ga0500622_0001630 3300053156 Bacteria 17588
238 Ga0500637_0032987 3300053178 Unclassified 2890
239 Ga0501082_0282740 3300060353 Bacteria 1444
240 2509370581 2509276018 Bacteria 6910194
241 2561467855 2558860983 Bacteria 4133860
242 2643770753 2643221550 Bacteria 4619371
243 2874171761 2874168670 Bacteria 8062617
244 2891049580 2891048133 Bacteria 4447501
245 2937844668 2937843397 Bacteria 5256375
246 2995395573 2995392953 Bacteria 4539380
247 8004698292 8004695233 Bacteria 6731676
248 8007372153 8007371054 Bacteria 4849201
249 8007379440 8007375930 Bacteria 4080554
250 Ga0400487_53818
251 Ga0006562J51391_1018261
252 Ga0055542_1000625
253 Ga0068869_100725779
254 Ga0070713_100141990
255 Ga0070711_100123477
256 Ga0070699_100912124
257 Ga0068853_100783546
258 Ga0068856_100962135
259 Ga0081455_10020788
260 Ga0081539_10099216
261 Ga0070716_100049017
262 Ga0075366_10228525
263 Ga0075428_100758708
264 Ga0079104_1000181
265 Ga0079104_1003722
266 Ga0079104_1017715
267 Ga0105245_10414543
268 Ga0105239_10246878
269 Ga0213874_10056033
270 Ga0224572_1014693
271 Ga0228598_1003014
272 Ga0209025_1064754
273 Ga0207694_10356254
274 Ga0207641_10091804
275 Ga0209281_1000241
276 Ga0209281_1000302
277 Ga0209281_1022663
278 Ga0209588_1001519
279 Ga0265337_1007466
280 Ga0265337_1007945
281 Ga0265326_10000347
282 Ga0265319_1000134
283 Ga0265319_1002518
284 Ga0265334_10000477
285 Ga0265334_10036976
286 Ga0265318_10001861
287 Ga0265318_10007494
288 Ga0265318_10046200
289 Ga0265323_10000174
290 Ga0265322_10000212
291 Ga0265322_10011633
292 Ga0265336_10002401
293 Ga0265336_10052934
294 Ga0307515_10001299
295 Ga0265338_10001182
296 Ga0265338_10003941
297 Ga0265338_10016804
298 Ga0265338_10017727
299 Ga0265324_10000703
300 Ga0265324_10004480
301 Ga0265324_10083957
302 Ga0265762_1013254
303 Ga0265770_1001864
304 Ga0265770_1035620
305 Ga0265760_10019363
306 Ga0265330_10000578
307 Ga0265330_10094082
308 Ga0265332_10000197
309 Ga0265328_10002212
310 Ga0265320_10005377
311 Ga0265320_10006610
312 Ga0265325_10017720
313 Ga0265329_10002896
314 Ga0265340_10005290
315 Ga0265339_10002346
316 Ga0265339_10032576
317 Ga0265331_10002159
318 Ga0265316_10004578
319 Ga0265316_10008213
320 Ga0265316_10280535
321 Ga0307513_10277029
322 Ga0265313_10007803
323 Ga0265313_10045628
324 Ga0316575_10000799
325 Ga0316575_10006944
326 Ga0316575_10008852
327 Ga0316575_10019351
328 Ga0316575_10024052
329 Ga0316575_10160285
330 Ga0316579_10001008
331 Ga0316579_10015203
332 Ga0316579_10030560
333 Ga0316579_10071660
334 Ga0316579_10142779
335 Ga0316579_10334609
336 Ga0265314_10000839
337 Ga0265314_10144316
338 Ga0265342_10005518
339 Ga0265342_10024768
340 Ga0316576_10001282
341 Ga0316576_10012594
342 Ga0316576_10016067
343 Ga0316576_10073309
344 Ga0316576_10146235
345 Ga0316576_10163755
346 Ga0316578_10001741
347 Ga0316578_10008136
348 Ga0316578_10019780
349 Ga0316578_10036678
350 Ga0316578_10060819
351 Ga0316578_10064675
352 Ga0316578_10121957
353 Ga0316578_10255357
354 Ga0316578_10354873
355 Ga0307516_10066405
356 Ga0316577_10006688
357 Ga0316577_10009466
358 Ga0316577_10012170
359 Ga0316577_10022713
360 Ga0316577_10028204
361 Ga0316577_10057614
362 Ga0316577_10072417
363 Ga0316577_10203855
364 Ga0307416_101157120
365 Ga0316583_10000132
366 Ga0316583_10005560
367 Ga0316583_10007499
368 Ga0316583_10013851
369 Ga0316583_10099158
370 Ga0316583_10156904
371 Ga0316585_10000297
372 Ga0316585_10007494
373 Ga0316585_10040908
374 Ga0316585_10042923
375 Ga0316585_10058616
376 Ga0316580_10001411
377 Ga0316580_10013427
378 Ga0316580_10014436
379 Ga0316593_10033950
380 Ga0316592_1040798
381 Ga0316586_1053455
382 Ga0316588_1037773
383 Ga0316596_1002102
384 Ga0316596_1035759
385 Ga0316596_1053203
386 Ga0373954_0197133
387 Ga0316574_0000134
388 Ga0316574_0004294
389 Ga0316574_0051266
390 Ga0316574_0061094
391 Ga0316574_0073403
392 Ga0316574_0082790
393 Ga0316574_0085040
394 Ga0316574_0121001
395 Ga0373927_0000057
396 Ga0373927_0189881
397 Ga0316582_0000580
398 Ga0316582_0001092
399 Ga0316582_0002007
400 Ga0316582_0007615
401 Ga0316582_0033153
402 Ga0316582_0061327
403 Ga0316582_0071853
404 Ga0316582_0093745
405 Ga0316582_0097511
406 Ga0316582_0137517
407 Ga0316582_0146483
408 Ga0316582_0161555
409 Ga0316582_0200724
410 Ga0316584_0000316
411 Ga0316584_0001924
412 Ga0316584_0005887
413 Ga0316584_0020968
414 Ga0316584_0025514
415 Ga0316584_0029230
416 Ga0316584_0035097
417 Ga0316584_0059508
418 Ga0316584_0066645
419 Ga0316584_0084698
420 Ga0316584_0147899
421 Ga0316584_0185228
422 Ga0316584_0205377
423 Ga0373925_0003701
424 Ga0395899_0005988
425 Ga0395900_0004169
426 Ga0395905_0000927
427 Ga0395905_0041608
428 Ga0395905_0114898
429 Ga0316581_0001273
430 Ga0316581_0006076
431 Ga0316581_0035227
432 Ga0316581_0166205
433 Ga0400484_15096
434 Ga0400484_34488
435 Ga0400484_43074
436 Ga0400490_34083
437 Ga0400490_57637
438 Ga0400491_00572
439 Ga0400491_10369
440 Ga0400485_11713
441 Ga0400485_13631
442 Ga0400485_14169
443 Ga0400488_09713
444 Ga0400488_16326
445 Ga0400488_41543
446 Ga0400486_00558
447 Ga0400486_25675
448 Ga0400486_31626
449 Ga0400483_015976
450 Ga0400483_018802
451 Ga0400483_068831
452 Ga0400483_104683
453 Ga0400483_180148
454 Ga0400483_292323
455 Ga0400489_16415
456 Ga0400489_71101
457 Ga0400489_75741
458 Ga0400489_81762
459 Ga0400487_03051
460 Ga0400487_09272
461 Ga0451853_1620654
462 Ga0466964_0090737
463 Ga0453684_0004279
464 Ga0453684_0025512
465 Ga0495603_0134691
466 Ga0495638_0014827
467 Ga0495638_0345899
468 Ga0495620_0014140
469 Ga0495654_0044954
470 Ga0495654_0147492
471 Ga0495672_0012810
472 Ga0495680_0226484
473 Ga0495602_0782647
474 Ga0496109_0008997
475 Ga0496122_0018723
476 Ga0496126_0000533
477 Ga0501031_0035095
478 Ga0501034_0009570
479 Ga0501034_0017415
480 nmdc:mga0k408_514399_c1
481 Ga0500643_002773
482 Ga0500644_0095156
483 Ga0500556_0110233
484 Ga0500559_0004087
485 Ga0500568_0035210
486 Ga0500622_0001630
487 Ga0500637_0032987
488 Ga0501082_0282740
489 2509370581
490 2561467855
491 2643770753
492 2874171761
493 2891049580
494 2937844668
495 2995395573
496 8004698292
497 8007372153
498 8007379440

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13662

Toprim_4

Toprim domain

109

201

0.97

PF21175

RecR_C

RecR, C-terminal

203

226

0.97

PF21176

RecR_HhH

RecR, helix-hairpin-helix

36

80

0.95

PF02132

RecR_ZnF

RecR, Cys4-zinc finger motif

83

103

0.94

PF01751

Toprim

Toprim domain

110

200

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
8a93-assembly1.cif.gz_F complex of recf-recr-dna from thermus thermophilus. 0.9266 84 174
8a93-assembly1.cif.gz_F complex of recf-recr-dna from thermus thermophilus. 0.9075 84 174
3ve5-assembly1.cif.gz_A structure of recombination mediator protein recr16-196 deletion mutant 0.8505 21 201
3ve5-assembly1.cif.gz_A structure of recombination mediator protein recr16-196 deletion mutant 0.846 21 201
5zvq-assembly1.cif.gz_A-2 crystal structure of recombination mediator protein recr 0.805 6 201
ID Description Score Start End Superfamily
af_P0A7H6_77_171_3.40.1360.10 Alpha Beta;3-Layer(aba) Sandwich;Dna Topoisomerase Vi A Subunit; Chain: A, domain 2; 0.9531 83 173 3.40.1360.10
3ve5A03 Alpha Beta;3-Layer(aba) Sandwich;Dna Topoisomerase Vi A Subunit; Chain: A, domain 2; 0.9337 80 201 3.40.1360.10
3ve5A03 Alpha Beta;3-Layer(aba) Sandwich;Dna Topoisomerase Vi A Subunit; Chain: A, domain 2; 0.9264 80 201 3.40.1360.10
af_P9WHI3_76_174_3.40.1360.10 Alpha Beta;3-Layer(aba) Sandwich;Dna Topoisomerase Vi A Subunit; Chain: A, domain 2; 0.9242 80 173 3.40.1360.10
1vddC03 Alpha Beta;3-Layer(aba) Sandwich;Dna Topoisomerase Vi A Subunit; Chain: A, domain 2; 0.9162 80 173 3.40.1360.10
ID Description Score Start End GO Terms
AF-A0A3B9BGG3-F1-model_v4 Recombination protein RecR 0.9852 63 158 GO:0003677
GO:0006281
GO:0006310
GO:0046872
AF-A0A268RH89-F1-model_v4 Recombination protein RecR 0.9747 74 176 GO:0003677
GO:0006281
GO:0006310
GO:0046872
AF-A0A5E9AYX5-F1-model_v4 Recombination protein RecR 0.972 1 165 GO:0003677
GO:0006281
GO:0006310
GO:0008933
GO:0009253
GO:0046872
AF-W1XYN8-F1-model_v4 Recombination protein RecR 0.9684 43 155 GO:0003677
GO:0006281
GO:0006310
GO:0046872
AF-A0A3B9BGG3-F1-model_v4 Recombination protein RecR 0.9653 63 158 GO:0003677
GO:0006281
GO:0006310
GO:0046872

Map