F359810

General Info

Members Datasets Scaffolds Average Seq Length
248 98 496 177

Family's Representative Sequence

Representative Sequence 3300006871|Ga0075434_100484569|Ga0075434_1004845692
Length 185
Sequence MVQEQIDDARTRMSKAVESLRHELGSVRTGRASAGLVEHLRVDYYGAPTPLNQLATISTPDARLIVIQPYDRGAMGAIEKSILKSDLGLTPSNDGTVIRLSIPPLTDERRRELAKHVRKRVEDARVAVRNVRRDCHDQIRKLEHDHTISQDDLHRSETDLQKLTDEQVKEIDKVGEVKEQELLAI

Samples

Sample ID Description Type Environment
1 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
2 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
3 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
4 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
5 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
6 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
7 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
8 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
9 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
10 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
11 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
12 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
13 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
14 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
15 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
16 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
17 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
18 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
20 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
21 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
22 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
23 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
24 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
25 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
26 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
27 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
28 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
29 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
30 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
31 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
32 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
33 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
34 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
35 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
36 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
37 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
38 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
39 3300035092 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 Metagenome Rhizosphere
40 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
41 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
42 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
43 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
44 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
45 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
46 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
47 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
48 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
49 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
50 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
51 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
52 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
53 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
54 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
55 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
56 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
57 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
58 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
59 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
60 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
61 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
62 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
63 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
65 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
67 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
68 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
72 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
73 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
74 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
75 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
76 3300049656 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought Metagenome Rhizosphere
77 3300049670 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought Metagenome Rhizosphere
78 3300049684 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D14_B_3_control Metagenome Rhizosphere
79 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
80 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
81 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
82 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
83 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
85 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
86 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
87 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
88 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
89 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
90 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
91 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
92 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
93 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
94 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
95 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
96 3001267043 Bacillus sp. FJAT-49870 Isolate Rhizosphere
97 3001272096 Lederbergia citrisecunda FJAT-49732 Isolate Rhizosphere
98 8057632132 Cytobacillus kochii RZ2 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.11
Metatranscriptomes 9.68
Isolates 1.21

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.4
Nodule 0
Rhizoplane 0
Rhizosphere 94.35
Stem 0
Stem Tuber 0
Unclassified 4.84

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075434_100484569 3300006871 Bacteria 1258
2 Ga0070706_100102047 3300005467 Bacteria 2666
3 Ga0070706_100769849 3300005467 Bacteria 891
4 Ga0070707_100301446 3300005468 Bacteria 1557
5 Ga0070698_100268892 3300005471 Bacteria 1636
6 Ga0070697_100862195 3300005536 Bacteria 803
7 Ga0070697_100975697 3300005536 Bacteria 753
8 Ga0070704_100400556 3300005549 Bacteria 1171
9 Ga0070704_100642544 3300005549 Bacteria 936
10 Ga0081455_10002090 3300005937 Bacteria 23831
11 Ga0081455_10002731 3300005937 Bacteria 20821
12 Ga0081538_10001495 3300005981 Bacteria 23986
13 Ga0081538_10026585 3300005981 Bacteria 4043
14 Ga0081540_1032890 3300005983 Bacteria 2824
15 Ga0081539_10228293 3300005985 Unclassified 842
16 Ga0075430_100330825 3300006846 Bacteria 1259
17 Ga0075431_100170798 3300006847 Bacteria 2234
18 Ga0075431_100450831 3300006847 Bacteria 1282
19 Ga0075433_10207268 3300006852 Bacteria 1743
20 Ga0075434_100052257 3300006871 Bacteria 4060
21 Ga0111539_10115003 3300009094 Bacteria 3155
22 Ga0114129_10003050 3300009147 Bacteria 23470
23 Ga0114129_10037893 3300009147 Bacteria 6803
24 Ga0114129_10323883 3300009147 Bacteria 2048
25 Ga0114129_12012234 3300009147 Bacteria 698
26 Ga0105239_10284057 3300010375 Bacteria 1863
27 Ga0209025_1086763 3300025294 Bacteria 1039
28 Ga0207684_10109497 3300025910 Bacteria 2364
29 Ga0207684_10330436 3300025910 Bacteria 1313
30 Ga0207684_10561755 3300025910 Bacteria 976
31 Ga0207428_10312778 3300027907 Bacteria 1161
32 Ga0316575_10004991 3300031665 Bacteria 4694
33 Ga0316575_10060768 3300031665 Bacteria 1510
34 Ga0316579_10006180 3300031691 Bacteria 4871
35 Ga0316579_10009189 3300031691 Bacteria 4150
36 Ga0316579_10010433 3300031691 Bacteria 3929
37 Ga0316579_10044336 3300031691 Bacteria 2071
38 Ga0316576_10045667 3300031727 Bacteria 3169
39 Ga0316576_10058193 3300031727 Bacteria 2827
40 Ga0316576_10073881 3300031727 Bacteria 2520
41 Ga0316576_10083261 3300031727 Bacteria 2376
42 Ga0316576_10110622 3300031727 Bacteria 2059
43 Ga0316576_10160723 3300031727 Bacteria 1694
44 Ga0316576_10293985 3300031727 Bacteria 1215
45 Ga0316576_10351447 3300031727 Bacteria 1097
46 Ga0316576_10435649 3300031727 Bacteria 969
47 Ga0316576_10664786 3300031727 Bacteria 757
48 Ga0316578_10002509 3300031728 Bacteria 8093
49 Ga0316578_10004811 3300031728 Bacteria 6440
50 Ga0316578_10014505 3300031728 Bacteria 4211
51 Ga0316578_10016390 3300031728 Bacteria 4009
52 Ga0316578_10052517 3300031728 Bacteria 2388
53 Ga0316578_10106233 3300031728 Bacteria 1684
54 Ga0316578_10126138 3300031728 Bacteria 1539
55 Ga0316578_10191071 3300031728 Bacteria 1233
56 Ga0316577_10008588 3300031733 Bacteria 5478
57 Ga0316577_10011604 3300031733 Bacteria 4776
58 Ga0316577_10032835 3300031733 Bacteria 2900
59 Ga0316577_10050753 3300031733 Bacteria 2316
60 Ga0316577_10077263 3300031733 Bacteria 1859
61 Ga0316577_10133878 3300031733 Bacteria 1395
62 Ga0316577_10256655 3300031733 Bacteria 989
63 Ga0316577_10354830 3300031733 Bacteria 832
64 Ga0316577_10439375 3300031733 Bacteria 741
65 Ga0307413_10006699 3300031824 Bacteria 5288
66 Ga0307410_10108477 3300031852 Bacteria 2005
67 Ga0307410_10507769 3300031852 Bacteria 993
68 Ga0307407_10130499 3300031903 Bacteria 1607
69 Ga0307412_10302993 3300031911 Bacteria 1264
70 Ga0307416_100014795 3300032002 Bacteria 5363
71 Ga0307416_100998405 3300032002 Unclassified 940
72 Ga0307414_10131382 3300032004 Bacteria 1944
73 Ga0307411_10196957 3300032005 Bacteria 1543
74 Ga0316583_10000347 3300032133 Bacteria 13257
75 Ga0316583_10001389 3300032133 Bacteria 8044
76 Ga0316583_10020978 3300032133 Bacteria 2342
77 Ga0316583_10050686 3300032133 Bacteria 1461
78 Ga0316583_10060942 3300032133 Bacteria 1322
79 Ga0316583_10091901 3300032133 Bacteria 1058
80 Ga0316585_10000795 3300032137 Bacteria 7951
81 Ga0316585_10051562 3300032137 Bacteria 1322
82 Ga0316585_10075799 3300032137 Bacteria 1094
83 Ga0316585_10146836 3300032137 Bacteria 778
84 Ga0316580_10003600 3300032139 Bacteria 4415
85 Ga0316580_10007542 3300032139 Bacteria 3241
86 Ga0316580_10011588 3300032139 Bacteria 2678
87 Ga0316593_10003080 3300032168 Bacteria 4076
88 Ga0316593_10004655 3300032168 Bacteria 3540
89 Ga0316593_10006759 3300032168 Bacteria 3116
90 Ga0316593_10011859 3300032168 Bacteria 2544
91 Ga0316593_10013393 3300032168 Bacteria 2428
92 Ga0316593_10018440 3300032168 Bacteria 2144
93 Ga0316593_10022026 3300032168 Bacteria 1998
94 Ga0316593_10039615 3300032168 Bacteria 1564
95 Ga0316593_10069711 3300032168 Bacteria 1215
96 Ga0316593_10148213 3300032168 Bacteria 853
97 Ga0316593_10167030 3300032168 Bacteria 805
98 Ga0316593_10203413 3300032168 Bacteria 732
99 Ga0316593_10225591 3300032168 Bacteria 697
100 Ga0316592_1001989 3300033524 Bacteria 3455
101 Ga0316592_1055752 3300033524 Bacteria 884
102 Ga0316596_1001283 3300033541 Bacteria 4984
103 Ga0316596_1001849 3300033541 Bacteria 4409
104 Ga0316596_1003570 3300033541 Bacteria 3424
105 Ga0316596_1005142 3300033541 Bacteria 2975
106 Ga0316596_1005156 3300033541 Bacteria 2972
107 Ga0316596_1006675 3300033541 Bacteria 2694
108 Ga0316596_1025742 3300033541 Bacteria 1515
109 Ga0316596_1029707 3300033541 Bacteria 1415
110 Ga0316596_1084355 3300033541 Unclassified 854
111 Ga0373940_0118756 3300035088 Unclassified 818
112 Ga0373952_0040396 3300035092 Bacteria 1076
113 Ga0316574_0001384 3300035398 Bacteria 11456
114 Ga0316574_0015897 3300035398 Bacteria 4373
115 Ga0316574_0035044 3300035398 Bacteria 3065
116 Ga0316574_0084463 3300035398 Bacteria 2019
117 Ga0316574_0473305 3300035398 Bacteria 783
118 Ga0373931_0134539 3300035691 Bacteria 1426
119 Ga0316582_0000807 3300036647 Bacteria 12702
120 Ga0316582_0002168 3300036647 Bacteria 9103
121 Ga0316582_0005112 3300036647 Bacteria 6711
122 Ga0316582_0008986 3300036647 Bacteria 5399
123 Ga0316582_0040519 3300036647 Bacteria 2907
124 Ga0316582_0046842 3300036647 Bacteria 2727
125 Ga0316582_0061363 3300036647 Bacteria 2411
126 Ga0316582_0073657 3300036647 Bacteria 2216
127 Ga0316582_0080621 3300036647 Bacteria 2124
128 Ga0316582_0109444 3300036647 Bacteria 1838
129 Ga0316582_0128589 3300036647 Bacteria 1700
130 Ga0316582_0153989 3300036647 Bacteria 1555
131 Ga0316582_0154542 3300036647 Bacteria 1552
132 Ga0316582_0168190 3300036647 Bacteria 1487
133 Ga0316582_0435685 3300036647 Bacteria 903
134 Ga0316584_0000662 3300036712 Bacteria 18835
135 Ga0316584_0003374 3300036712 Bacteria 10352
136 Ga0316584_0015412 3300036712 Bacteria 5467
137 Ga0316584_0018470 3300036712 Bacteria 5031
138 Ga0316584_0021869 3300036712 Bacteria 4656
139 Ga0316584_0025501 3300036712 Bacteria 4337
140 Ga0316584_0029541 3300036712 Bacteria 4046
141 Ga0316584_0032816 3300036712 Bacteria 3842
142 Ga0316584_0038404 3300036712 Bacteria 3561
143 Ga0316584_0052938 3300036712 Bacteria 3036
144 Ga0316584_0141028 3300036712 Bacteria 1797
145 Ga0316584_0159675 3300036712 Bacteria 1675
146 Ga0316584_0178589 3300036712 Bacteria 1572
147 Ga0316584_0197836 3300036712 Bacteria 1484
148 Ga0316584_0212525 3300036712 Bacteria 1423
149 Ga0316584_0223813 3300036712 Bacteria 1381
150 Ga0316584_0252093 3300036712 Bacteria 1289
151 Ga0316584_0335437 3300036712 Bacteria 1088
152 Ga0316584_0568593 3300036712 Bacteria 789
153 Ga0316584_0862092 3300036712 Bacteria 612
154 Ga0316581_0001008 3300037588 Bacteria 6041
155 Ga0316581_0033690 3300037588 Bacteria 1548
156 Ga0400484_31304 3300038725 Bacteria 7395
157 Ga0400490_02189 3300038726 Bacteria 2389
158 Ga0400490_04711 3300038726 Bacteria 111545
159 Ga0400491_04130 3300038727 Bacteria 8902
160 Ga0400488_28511 3300038741 Bacteria 9538
161 Ga0400486_04784 3300038742 Bacteria 42272
162 Ga0400483_024348 3300039062 Bacteria 1413
163 Ga0400483_116266 3300039062 Bacteria 3114
164 Ga0400483_247184 3300039062 Unclassified 1559
165 Ga0400483_263604 3300039062 Bacteria 19769
166 Ga0400483_264330 3300039062 Bacteria 7715
167 Ga0400489_26357 3300039093 Bacteria 10680
168 Ga0400489_39565 3300039093 Bacteria 11733
169 Ga0439434_0042355 3300042435 Bacteria 1400
170 Ga0451577_0000074 3300042876 Bacteria 232698
171 Ga0451577_0005601 3300042876 Bacteria 12775
172 Ga0451577_0012417 3300042876 Bacteria 8000
173 Ga0451577_0021258 3300042876 Bacteria 5940
174 Ga0451577_0124244 3300042876 Bacteria 2312
175 Ga0451577_0181153 3300042876 Bacteria 1899
176 Ga0439440_0098924 3300042993 Unclassified 792
177 Ga0453683_0044651 3300044673 Bacteria 2780
178 Ga0453683_0164149 3300044673 Bacteria 1406
179 Ga0453683_0260893 3300044673 Bacteria 1105
180 Ga0453684_0000482 3300044712 Bacteria 158296
181 Ga0453684_0007245 3300044712 Bacteria 20535
182 Ga0453684_0010417 3300044712 Bacteria 15906
183 Ga0453684_0011788 3300044712 Bacteria 14570
184 Ga0453684_0017375 3300044712 Bacteria 11146
185 Ga0453684_0024998 3300044712 Bacteria 8691
186 Ga0453684_0301500 3300044712 Bacteria 1821
187 Ga0453684_0530348 3300044712 Bacteria 1299
188 Ga0453684_0979810 3300044712 Bacteria 900
189 Ga0451576_0138081 3300045051 Bacteria 2542
190 Ga0501298_010084 3300049521 Bacteria 1619
191 Ga0501032_0026723 3300049569 Bacteria 3967
192 Ga0501033_0286597 3300049570 Bacteria 1162
193 Ga0501036_0038257 3300049572 Bacteria 4060
194 Ga0501037_0077964 3300049573 Bacteria 2404
195 Ga0501038_0003909 3300049574 Bacteria 13856
196 Ga0501038_0120989 3300049574 Bacteria 2159
197 Ga0501039_0000922 3300049575 Bacteria 21469
198 Ga0501039_0022240 3300049575 Bacteria 4867
199 Ga0501040_0108430 3300049576 Bacteria 1941
200 Ga0501041_0007706 3300049577 Bacteria 6318
201 Ga0501041_0012937 3300049577 Bacteria 4943
202 Ga0501041_0236707 3300049577 Unclassified 1147
203 Ga0501042_0003166 3300049578 Bacteria 10259
204 Ga0501042_0123590 3300049578 Bacteria 1863
205 Ga0501042_0661114 3300049578 Bacteria 760
206 Ga0501043_0157629 3300049579 Bacteria 1775
207 Ga0501046_0003408 3300049580 Bacteria 14596
208 Ga0501046_0009037 3300049580 Bacteria 8639
209 Ga0501048_0009173 3300049582 Bacteria 7438
210 Ga0501048_0120332 3300049582 Unclassified 1855
211 Ga0501071_0065520 3300049587 Bacteria 2638
212 Ga0501072_0852136 3300049588 Bacteria 712
213 Ga0501074_0564075 3300049590 Unclassified 806
214 Ga0501075_0212813 3300049591 Bacteria 1474
215 Ga0501075_0223641 3300049591 Bacteria 1436
216 Ga0501198_015145 3300049649 Bacteria 1182
217 Ga0501209_118202 3300049656 Bacteria 785
218 Ga0501236_011625 3300049670 Bacteria 1173
219 Ga0501255_044131 3300049684 Unclassified 663
220 Ga0501257_043947 3300049686 Bacteria 1102
221 Ga0501079_0321176 3300049741 Bacteria 1212
222 Ga0501080_0840966 3300049742 Bacteria 803
223 Ga0501081_0821668 3300049743 Bacteria 700
224 Ga0501035_0006487 3300049822 Bacteria 10993
225 Ga0501035_0109942 3300049822 Bacteria 2416
226 Ga0501045_0119121 3300049824 Bacteria 1960
227 nmdc:mga05p37_405150_c1 3300050507 Bacteria 1591
228 nmdc:mga05p37_45244_c1 3300050507 Bacteria 5415
229 nmdc:mga05p37_47531_c1 3300050507 Bacteria 5277
230 nmdc:mga09592_305743_c1 3300050508 Bacteria 1378
231 nmdc:mga0qj67_71949_c1 3300050509 Bacteria 2760
232 nmdc:mga0qj67_823976_c1 3300050509 Unclassified 734
233 nmdc:mga06r32_148218_c1 3300050510 Bacteria 2324
234 nmdc:mga06r32_236487_c1 3300050510 Bacteria 1814
235 nmdc:mga08y16_91703_c1 3300050511 Bacteria 3166
236 nmdc:mga0n895_40216_c1 3300050512 Bacteria 4541
237 nmdc:mga0n895_681392_c1 3300050512 Bacteria 1025
238 nmdc:mga0rr50_604865_c1 3300050513 Bacteria 935
239 nmdc:mga0a205_200324_c1 3300050515 Bacteria 1887
240 Ga0501084_0407073 3300054114 Bacteria 1150
241 Ga0501082_0252065 3300060353 Bacteria 1536
242 Ga0501082_0822738 3300060353 Bacteria 812
243 Ga0530510_0001605 3300061734 Bacteria 15267
244 Ga0530510_0079384 3300061734 Unclassified 2387
245 Ga0530510_0139197 3300061734 Bacteria 1788
246 3001267645 3001267043 Bacteria 4823521
247 3001273119 3001272096 Bacteria 4729684
248 8057634224 8057632132 Bacteria 4726859
249 Ga0075434_100484569
250 Ga0070706_100102047
251 Ga0070706_100769849
252 Ga0070707_100301446
253 Ga0070698_100268892
254 Ga0070697_100862195
255 Ga0070697_100975697
256 Ga0070704_100400556
257 Ga0070704_100642544
258 Ga0081455_10002090
259 Ga0081455_10002731
260 Ga0081538_10001495
261 Ga0081538_10026585
262 Ga0081540_1032890
263 Ga0081539_10228293
264 Ga0075430_100330825
265 Ga0075431_100170798
266 Ga0075431_100450831
267 Ga0075433_10207268
268 Ga0075434_100052257
269 Ga0111539_10115003
270 Ga0114129_10003050
271 Ga0114129_10037893
272 Ga0114129_10323883
273 Ga0114129_12012234
274 Ga0105239_10284057
275 Ga0209025_1086763
276 Ga0207684_10109497
277 Ga0207684_10330436
278 Ga0207684_10561755
279 Ga0207428_10312778
280 Ga0316575_10004991
281 Ga0316575_10060768
282 Ga0316579_10006180
283 Ga0316579_10009189
284 Ga0316579_10010433
285 Ga0316579_10044336
286 Ga0316576_10045667
287 Ga0316576_10058193
288 Ga0316576_10073881
289 Ga0316576_10083261
290 Ga0316576_10110622
291 Ga0316576_10160723
292 Ga0316576_10293985
293 Ga0316576_10351447
294 Ga0316576_10435649
295 Ga0316576_10664786
296 Ga0316578_10002509
297 Ga0316578_10004811
298 Ga0316578_10014505
299 Ga0316578_10016390
300 Ga0316578_10052517
301 Ga0316578_10106233
302 Ga0316578_10126138
303 Ga0316578_10191071
304 Ga0316577_10008588
305 Ga0316577_10011604
306 Ga0316577_10032835
307 Ga0316577_10050753
308 Ga0316577_10077263
309 Ga0316577_10133878
310 Ga0316577_10256655
311 Ga0316577_10354830
312 Ga0316577_10439375
313 Ga0307413_10006699
314 Ga0307410_10108477
315 Ga0307410_10507769
316 Ga0307407_10130499
317 Ga0307412_10302993
318 Ga0307416_100014795
319 Ga0307416_100998405
320 Ga0307414_10131382
321 Ga0307411_10196957
322 Ga0316583_10000347
323 Ga0316583_10001389
324 Ga0316583_10020978
325 Ga0316583_10050686
326 Ga0316583_10060942
327 Ga0316583_10091901
328 Ga0316585_10000795
329 Ga0316585_10051562
330 Ga0316585_10075799
331 Ga0316585_10146836
332 Ga0316580_10003600
333 Ga0316580_10007542
334 Ga0316580_10011588
335 Ga0316593_10003080
336 Ga0316593_10004655
337 Ga0316593_10006759
338 Ga0316593_10011859
339 Ga0316593_10013393
340 Ga0316593_10018440
341 Ga0316593_10022026
342 Ga0316593_10039615
343 Ga0316593_10069711
344 Ga0316593_10148213
345 Ga0316593_10167030
346 Ga0316593_10203413
347 Ga0316593_10225591
348 Ga0316592_1001989
349 Ga0316592_1055752
350 Ga0316596_1001283
351 Ga0316596_1001849
352 Ga0316596_1003570
353 Ga0316596_1005142
354 Ga0316596_1005156
355 Ga0316596_1006675
356 Ga0316596_1025742
357 Ga0316596_1029707
358 Ga0316596_1084355
359 Ga0373940_0118756
360 Ga0373952_0040396
361 Ga0316574_0001384
362 Ga0316574_0015897
363 Ga0316574_0035044
364 Ga0316574_0084463
365 Ga0316574_0473305
366 Ga0373931_0134539
367 Ga0316582_0000807
368 Ga0316582_0002168
369 Ga0316582_0005112
370 Ga0316582_0008986
371 Ga0316582_0040519
372 Ga0316582_0046842
373 Ga0316582_0061363
374 Ga0316582_0073657
375 Ga0316582_0080621
376 Ga0316582_0109444
377 Ga0316582_0128589
378 Ga0316582_0153989
379 Ga0316582_0154542
380 Ga0316582_0168190
381 Ga0316582_0435685
382 Ga0316584_0000662
383 Ga0316584_0003374
384 Ga0316584_0015412
385 Ga0316584_0018470
386 Ga0316584_0021869
387 Ga0316584_0025501
388 Ga0316584_0029541
389 Ga0316584_0032816
390 Ga0316584_0038404
391 Ga0316584_0052938
392 Ga0316584_0141028
393 Ga0316584_0159675
394 Ga0316584_0178589
395 Ga0316584_0197836
396 Ga0316584_0212525
397 Ga0316584_0223813
398 Ga0316584_0252093
399 Ga0316584_0335437
400 Ga0316584_0568593
401 Ga0316584_0862092
402 Ga0316581_0001008
403 Ga0316581_0033690
404 Ga0400484_31304
405 Ga0400490_02189
406 Ga0400490_04711
407 Ga0400491_04130
408 Ga0400488_28511
409 Ga0400486_04784
410 Ga0400483_024348
411 Ga0400483_116266
412 Ga0400483_247184
413 Ga0400483_263604
414 Ga0400483_264330
415 Ga0400489_26357
416 Ga0400489_39565
417 Ga0439434_0042355
418 Ga0451577_0000074
419 Ga0451577_0005601
420 Ga0451577_0012417
421 Ga0451577_0021258
422 Ga0451577_0124244
423 Ga0451577_0181153
424 Ga0439440_0098924
425 Ga0453683_0044651
426 Ga0453683_0164149
427 Ga0453683_0260893
428 Ga0453684_0000482
429 Ga0453684_0007245
430 Ga0453684_0010417
431 Ga0453684_0011788
432 Ga0453684_0017375
433 Ga0453684_0024998
434 Ga0453684_0301500
435 Ga0453684_0530348
436 Ga0453684_0979810
437 Ga0451576_0138081
438 Ga0501298_010084
439 Ga0501032_0026723
440 Ga0501033_0286597
441 Ga0501036_0038257
442 Ga0501037_0077964
443 Ga0501038_0003909
444 Ga0501038_0120989
445 Ga0501039_0000922
446 Ga0501039_0022240
447 Ga0501040_0108430
448 Ga0501041_0007706
449 Ga0501041_0012937
450 Ga0501041_0236707
451 Ga0501042_0003166
452 Ga0501042_0123590
453 Ga0501042_0661114
454 Ga0501043_0157629
455 Ga0501046_0003408
456 Ga0501046_0009037
457 Ga0501048_0009173
458 Ga0501048_0120332
459 Ga0501071_0065520
460 Ga0501072_0852136
461 Ga0501074_0564075
462 Ga0501075_0212813
463 Ga0501075_0223641
464 Ga0501198_015145
465 Ga0501209_118202
466 Ga0501236_011625
467 Ga0501255_044131
468 Ga0501257_043947
469 Ga0501079_0321176
470 Ga0501080_0840966
471 Ga0501081_0821668
472 Ga0501035_0006487
473 Ga0501035_0109942
474 Ga0501045_0119121
475 nmdc:mga05p37_405150_c1
476 nmdc:mga05p37_45244_c1
477 nmdc:mga05p37_47531_c1
478 nmdc:mga09592_305743_c1
479 nmdc:mga0qj67_71949_c1
480 nmdc:mga0qj67_823976_c1
481 nmdc:mga06r32_148218_c1
482 nmdc:mga06r32_236487_c1
483 nmdc:mga08y16_91703_c1
484 nmdc:mga0n895_40216_c1
485 nmdc:mga0n895_681392_c1
486 nmdc:mga0rr50_604865_c1
487 nmdc:mga0a205_200324_c1
488 Ga0501084_0407073
489 Ga0501082_0252065
490 Ga0501082_0822738
491 Ga0530510_0001605
492 Ga0530510_0079384
493 Ga0530510_0139197
494 3001267645
495 3001273119
496 8057634224

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01765

RRF

Ribosome recycling factor

20

183

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
6vud-assembly1.cif.gz_B crystal structure of a ribosome recycling factor from ehrlichia chaffeensis 0.8974 1 167
1wih-assembly1.cif.gz_A solution structure of rsgi ruh-021, a domain ii of ribosome recycling factor from mouse cdna 0.8891 32 107
6vud-assembly1.cif.gz_B crystal structure of a ribosome recycling factor from ehrlichia chaffeensis 0.8824 1 167
1ise-assembly1.cif.gz_A crystal structure of a mutant of ribosome recycling factor from escherichia coli, arg132gly 0.8756 3 169
4v9d-assembly1.cif.gz_AY structures of the bacterial ribosome in classical and hybrid states of trna binding 0.8704 1 166
ID Description Score Start End Superfamily
af_B6TAV8_107_177_3.30.1360.40 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2; 0.9653 31 101 3.30.1360.40
af_P0A805_31_105_3.30.1360.40 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2; 0.9601 31 105 3.30.1360.40
af_Q9VSW4_108_176_3.30.1360.40 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2; 0.9566 37 104 3.30.1360.40
af_B6TAV8_107_177_3.30.1360.40 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2; 0.9524 31 101 3.30.1360.40
af_P0A805_31_105_3.30.1360.40 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2; 0.948 31 105 3.30.1360.40
ID Description Score Start End GO Terms
AF-A0A7X9JJS5-F1-model_v4 Ribosome recycling factor 0.9618 24 103 GO:0006412
GO:0043023
AF-X1LF43-F1-model_v4 Ribosome recycling factor domain-containing protein 0.9311 30 110 GO:0006412
GO:0043023
AF-A0A3D2GVN3-F1-model_v4 Ribosome recycling factor 0.9239 33 131 GO:0002184
GO:0005829
GO:0043023
AF-A0A2D6PVQ6-F1-model_v4 Ribosome recycling factor 0.9093 1 168 GO:0006412
GO:0043023
AF-A0A287IQI7-F1-model_v4 deleted 0.9081 37 130

Map