F359437

General Info

Members Datasets Scaffolds Average Seq Length
247 176 214 323

Family's Representative Sequence

Representative Sequence 3300053139|Ga0500568_0003003|Ga0500568_0003003_7257_8330
Length 352
Sequence VSDIRNVIVIGSGPAGYTAAVYTARADLKPLVFEGAQSGGALMTTTEVENFPGFPEGIMGPELMDNLRAQAERFGAEFVTDDVTSVDLTGDVKLVTVGETVYRARAVIIATGSAWRPLGVPGEQEYLGHGVSSCATCDGFFFKGQQIAVVGGGDSAMEEATFLTRFADSVTIVHRRGEFRASKIMVERALANPKIKVKWNSAVSEVRGQDGKVSELVLRDTETGQDSSLPVTGLFVAIGHVPRSELFAGQIERDETGYVLVQSPSSRTNLPGVFAAGDVVDHVYQQAITAAGSGCVAALDAERYLENLSDNETPVGGAWLPAEELSGSASDLGSSAGGEATGSTHPVDAARV

Samples

Sample ID Description Type Environment
1 2506783011 Frankia datiscae Dg1 Isolate Nodule
2 2508501039 Frankia saprophytica CN3 Isolate Nodule
3 2517572101 Frankia sp. DC12 Isolate Nodule
4 2527291627 Frankia casuarinae Thr Isolate Nodule
5 2527291629 Frankia sp. BMG5.23 Isolate Nodule
6 2546825537 Frankia sp. CcI6 Isolate Rhizoplane
7 2576861822 Frankia sp. CeD Isolate Nodule
8 2579778521 Frankia torreyi CpI1-S Isolate Unclassified
9 2619618881 Frankia sp. ACN1ag Isolate Unclassified
10 2619619003 Frankia sp. CpI1-P Isolate Nodule
11 2626541554 Frankia sp. AvcI.1 Isolate Nodule
12 2675902999 Frankia asymbiotica NRRL B-16386 Isolate Nodule
13 2684623036 Frankia sp. CgIM4 Isolate Nodule
14 2687453737 Frankia sp. BMG5.36 Isolate Nodule
15 2710264753 Frankia sp. KB5 Isolate Nodule
16 2751185725 Microbispora sp. NRRL B-24597 Isolate Unclassified
17 2751185792 Kitasatospora arboriphila NRRL B-24581 Isolate Unclassified
18 2773857921 Frankia asymbiotica NRRL B-16386 Isolate Nodule
19 2773857924 Frankia sp. CgIS1 Isolate Nodule
20 2773857933 Frankia sp. BMG5.30 Isolate Nodule
21 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
22 2856741275 Microbispora triticiradicis NEAU-HRDPA2-9 Isolate Unclassified
23 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
24 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
25 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
26 2891562705 Microbispora tritici MT50 Isolate Unclassified
27 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
28 3300003162 Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_21 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
29 3300003574 Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_26 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
30 3300003577 Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_32 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
31 3300003579 Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_45 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
32 3300003611 Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_27 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
33 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
34 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
35 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
36 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
37 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
38 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
39 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
40 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
41 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
42 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
43 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
44 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
45 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
46 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
47 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
48 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
49 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
50 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
51 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
52 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
53 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
54 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
55 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
56 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
57 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
58 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
59 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
60 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
61 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
62 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
63 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
64 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
65 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
66 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
67 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
68 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
69 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
70 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
71 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
85 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
86 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
87 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
88 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
89 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
90 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
91 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
92 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
93 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
94 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
95 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
96 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
97 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
98 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
99 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
100 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
101 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
102 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
103 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
104 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
105 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
106 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
107 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
108 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
109 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
110 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
111 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
112 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
113 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
114 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
115 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
116 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
117 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
118 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
119 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
120 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
121 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
122 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
123 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
124 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
125 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
126 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
127 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
128 3300049533 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
129 3300049534 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
130 3300049537 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B12_A_3_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
131 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
135 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
145 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
146 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
147 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
148 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
149 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
150 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
151 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
152 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
153 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
154 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
155 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
156 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
157 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
158 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
159 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
160 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
161 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
162 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
163 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
164 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
165 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
166 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
167 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
168 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
169 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
170 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
171 637000116 Frankia casuarinae CcI3 Isolate Nodule
172 8002775197 Frankia nepalensis CN7 Isolate Nodule
173 8002784119 Frankia sp. AgB1.9 Isolate Nodule
174 8054913762 Frankia gtarii Agncl-10 Isolate Nodule
175 8054920844 Frankia tisae Agncl-8 Isolate Nodule
176 8055157932 Frankia umida Ag45/Mut15 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 78.95
Metatranscriptomes 7.69
Isolates 13.36

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.81
Nodule 8.5
Rhizoplane 4.86
Rhizosphere 77.33
Stem 0
Stem Tuber 0
Unclassified 8.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0006778J45830_1019565 3300003162 Bacteria 1570
2 Ga0007410J51695_1005894 3300003574 Bacteria 1633
3 Ga0007416J51690_1006938 3300003577 Bacteria 1173
4 Ga0007429J51699_1014398 3300003579 Bacteria 1270
5 Ga0007411J51799_105318 3300003611 Bacteria 1149
6 Ga0070683_100025970 3300005329 Bacteria 5267
7 Ga0070667_100038711 3300005367 Bacteria 3998
8 Ga0070714_100311952 3300005435 Bacteria 1469
9 Ga0070708_100088278 3300005445 Bacteria 2819
10 Ga0070698_100001735 3300005471 Bacteria 24317
11 Ga0070679_100177985 3300005530 Bacteria 2100
12 Ga0068855_100004837 3300005563 Bacteria 16442
13 Ga0068854_100050034 3300005578 Bacteria 2988
14 Ga0068852_100434513 3300005616 Bacteria 1297
15 Ga0068859_100000753 3300005617 Bacteria 32635
16 Ga0068864_100609654 3300005618 Bacteria 1060
17 Ga0068863_100001475 3300005841 Bacteria 23304
18 Ga0068858_100000143 3300005842 Bacteria 75688
19 Ga0068858_100101474 3300005842 Bacteria 2683
20 Ga0068862_100000328 3300005844 Bacteria 51688
21 Ga0081455_10049880 3300005937 Bacteria 3605
22 Ga0070715_10050621 3300006163 Bacteria 1784
23 Ga0075431_100107585 3300006847 Bacteria 2877
24 Ga0075433_10011374 3300006852 Bacteria 7165
25 Ga0075433_10095565 3300006852 Bacteria 2630
26 Ga0075434_100061883 3300006871 Bacteria 3725
27 Ga0097620_100000753 3300006931 Bacteria 32635
28 Ga0097620_100002088 3300006931 Bacteria 20360
29 Ga0075435_100014144 3300007076 Bacteria 5955
30 Ga0105240_10033446 3300009093 Bacteria 6642
31 Ga0111539_10206876 3300009094 Bacteria 2287
32 Ga0111539_10613699 3300009094 Bacteria 1267
33 Ga0105245_10064541 3300009098 Bacteria 3309
34 Ga0105247_10000024 3300009101 Bacteria 210946
35 Ga0105247_10002854 3300009101 Bacteria 11524
36 Ga0105248_10000110 3300009177 Bacteria 92748
37 Ga0105248_10001056 3300009177 Bacteria 30519
38 Ga0105248_10025143 3300009177 Bacteria 6620
39 Ga0105249_10123123 3300009553 Bacteria 2467
40 Ga0157370_10001145 3300013104 Bacteria 33060
41 Ga0157369_10006482 3300013105 Bacteria 13561
42 Ga0157369_10151443 3300013105 Bacteria 2451
43 Ga0163163_10106894 3300014325 Bacteria 2824
44 Ga0157379_10000753 3300014968 Bacteria 26200
45 Ga0157379_10025436 3300014968 Bacteria 5259
46 Ga0157379_10089522 3300014968 Bacteria 2761
47 Ga0197907_10513224 3300020069 Bacteria 1157
48 Ga0206352_10405733 3300020078 Bacteria 2051
49 Ga0206350_10062204 3300020080 Bacteria 2088
50 Ga0206350_10322873 3300020080 Bacteria 1629
51 Ga0206350_11275283 3300020080 Bacteria 1262
52 Ga0206350_11575321 3300020080 Bacteria 1666
53 Ga0206354_10329741 3300020081 Bacteria 2466
54 Ga0206353_10977051 3300020082 Bacteria 1820
55 Ga0213875_10067999 3300021388 Bacteria 1664
56 Ga0224712_10004247 3300022467 Bacteria 3841
57 Ga0224712_10035513 3300022467 Bacteria 1840
58 Ga0224712_10082342 3300022467 Bacteria 1331
59 Ga0207710_10000045 3300025900 Bacteria 210957
60 Ga0207710_10000102 3300025900 Bacteria 110426
61 Ga0207685_10033887 3300025905 Bacteria 1850
62 Ga0207695_10022422 3300025913 Bacteria 7166
63 Ga0207652_10106832 3300025921 Bacteria 2478
64 Ga0207687_10060819 3300025927 Bacteria 2665
65 Ga0207711_10002931 3300025941 Bacteria 14919
66 Ga0207711_10106848 3300025941 Bacteria 2484
67 Ga0207679_10181585 3300025945 Bacteria 1741
68 Ga0207667_10017976 3300025949 Bacteria 7945
69 Ga0207667_10026746 3300025949 Bacteria 6296
70 Ga0207640_10081423 3300025981 Bacteria 2214
71 Ga0207658_10208728 3300025986 Bacteria 1635
72 Ga0207703_10000058 3300026035 Bacteria 138087
73 Ga0207703_10132678 3300026035 Bacteria 2153
74 Ga0207698_10383393 3300026142 Bacteria 1338
75 Ga0268265_10000124 3300028380 Bacteria 96763
76 Ga0265338_10210448 3300028800 Bacteria 1460
77 Ga0265325_10007262 3300031241 Bacteria 6659
78 Ga0265340_10043004 3300031247 Bacteria 2216
79 Ga0265316_10032152 3300031344 Bacteria 4284
80 Ga0307509_10158087 3300031507 Bacteria 2169
81 Ga0265313_10067099 3300031595 Bacteria 1661
82 Ga0265342_10063607 3300031712 Bacteria 2168
83 Ga0307406_10113899 3300031901 Bacteria 1867
84 Ga0307406_10346565 3300031901 Bacteria 1159
85 Ga0307409_100070307 3300031995 Bacteria 2778
86 Ga0307409_100143262 3300031995 Bacteria 2063
87 Ga0307409_100414088 3300031995 Bacteria 1291
88 Ga0307416_100355873 3300032002 Bacteria 1484
89 Ga0307416_100383930 3300032002 Bacteria 1436
90 Ga0373951_0000440 3300035091 Bacteria 12107
91 Ga0373956_0002326 3300035119 Bacteria 7801
92 Ga0395899_0048749 3300037312 Bacteria 3151
93 Ga0395899_0067586 3300037312 Bacteria 2622
94 Ga0395900_0050354 3300037418 Bacteria 4290
95 Ga0395898_0010884 3300037466 Bacteria 9495
96 Ga0395905_0113606 3300037471 Bacteria 2544
97 Ga0395901_0194353 3300038443 Bacteria 2128
98 Ga0451577_0000144 3300042876 Bacteria 157986
99 Ga0451577_0007341 3300042876 Bacteria 10844
100 Ga0451577_0038162 3300042876 Bacteria 4321
101 Ga0451577_0045549 3300042876 Bacteria 3926
102 Ga0466969_0002816 3300044656 Bacteria 9293
103 Ga0466966_0006452 3300044684 Bacteria 7760
104 Ga0466966_0010262 3300044684 Bacteria 6214
105 Ga0466961_0018047 3300044693 Bacteria 4537
106 Ga0466961_0049172 3300044693 Bacteria 2695
107 Ga0453684_0003604 3300044712 Bacteria 34545
108 Ga0453684_0088996 3300044712 Bacteria 3820
109 Ga0453684_0114681 3300044712 Bacteria 3266
110 Ga0453684_0152320 3300044712 Bacteria 2746
111 Ga0453684_1031657 3300044712 Bacteria 873
112 Ga0466957_0017101 3300044842 Bacteria 4243
113 Ga0466957_0069859 3300044842 Bacteria 2170
114 Ga0466960_0064345 3300044901 Bacteria 1808
115 Ga0466960_0090045 3300044901 Bacteria 1562
116 Ga0466959_0012487 3300045049 Bacteria 6139
117 Ga0451576_0003425 3300045051 Bacteria 21811
118 Ga0466958_0017965 3300045836 Bacteria 4099
119 Ga0466958_0059483 3300045836 Bacteria 2324
120 Ga0466958_0181539 3300045836 Bacteria 1335
121 Ga0466967_0264220 3300045976 Bacteria 1647
122 Ga0466967_0281702 3300045976 Bacteria 1595
123 Ga0495669_0004276 3300046684 Bacteria 5891
124 Ga0495675_0096563 3300047444 Bacteria 1853
125 Ga0496102_0022911 3300048905 Bacteria 5539
126 Ga0496102_0465863 3300048905 Bacteria 1184
127 Ga0496103_0120461 3300048906 Bacteria 1671
128 Ga0496105_0055235 3300048908 Bacteria 3279
129 Ga0496108_0005470 3300048911 Bacteria 10270
130 Ga0496109_0020045 3300048912 Bacteria 5906
131 Ga0496110_0012485 3300048913 Bacteria 6986
132 Ga0496111_0144517 3300048914 Bacteria 1763
133 Ga0496114_0015169 3300048917 Bacteria 6198
134 Ga0496114_0112265 3300048917 Bacteria 2336
135 Ga0496114_0419947 3300048917 Bacteria 1185
136 Ga0496116_0000611 3300048919 Bacteria 47121
137 Ga0496117_0141594 3300048920 Bacteria 1439
138 Ga0496119_0001274 3300048922 Bacteria 31248
139 Ga0496119_0001976 3300048922 Bacteria 23293
140 Ga0496119_0009397 3300048922 Bacteria 8401
141 Ga0496120_0000892 3300048923 Bacteria 41970
142 Ga0496121_0164056 3300048924 Bacteria 1621
143 Ga0496126_0274961 3300048929 Bacteria 1397
144 Ga0501317_005471 3300049533 Bacteria 1362
145 Ga0501318_003593 3300049534 Bacteria 1433
146 Ga0501321_009575 3300049537 Bacteria 1048
147 Ga0501031_0043642 3300049568 Bacteria 2925
148 Ga0501032_0082509 3300049569 Bacteria 2139
149 Ga0501033_0024296 3300049570 Bacteria 4573
150 Ga0501036_0003482 3300049572 Bacteria 12582
151 Ga0501036_0012649 3300049572 Bacteria 7000
152 Ga0501036_0162740 3300049572 Bacteria 1881
153 Ga0501037_0001199 3300049573 Bacteria 19149
154 Ga0501037_0216094 3300049573 Bacteria 1350
155 Ga0501038_0008157 3300049574 Bacteria 9639
156 Ga0501038_0009836 3300049574 Bacteria 8755
157 Ga0501039_0045002 3300049575 Bacteria 3409
158 Ga0501039_0055489 3300049575 Bacteria 3068
159 Ga0501039_0268785 3300049575 Bacteria 1340
160 Ga0501040_0000984 3300049576 Bacteria 18038
161 Ga0501040_0035387 3300049576 Bacteria 3386
162 Ga0501041_0000137 3300049577 Bacteria 31752
163 Ga0501042_0003980 3300049578 Bacteria 9355
164 Ga0501042_0048777 3300049578 Bacteria 3019
165 Ga0501042_0218409 3300049578 Bacteria 1375
166 Ga0501043_0036505 3300049579 Bacteria 3866
167 Ga0501046_0003553 3300049580 Bacteria 14279
168 Ga0501047_0000466 3300049581 Bacteria 44248
169 Ga0501047_0000809 3300049581 Bacteria 32626
170 Ga0501047_0011210 3300049581 Bacteria 8481
171 Ga0501047_0180064 3300049581 Bacteria 1980
172 Ga0501048_0002830 3300049582 Bacteria 13246
173 Ga0501068_0003376 3300049584 Bacteria 8583
174 Ga0501069_0008562 3300049585 Bacteria 5380
175 Ga0501070_0003632 3300049586 Bacteria 13330
176 Ga0501071_0018608 3300049587 Bacteria 4813
177 Ga0501071_0059816 3300049587 Bacteria 2757
178 Ga0501072_0000585 3300049588 Bacteria 26235
179 Ga0501074_0001033 3300049590 Bacteria 18071
180 Ga0501074_0092703 3300049590 Bacteria 2163
181 Ga0501076_0002048 3300049592 Bacteria 13816
182 Ga0501076_0012761 3300049592 Bacteria 6290
183 Ga0501077_0000881 3300049593 Bacteria 18026
184 Ga0501079_0002507 3300049741 Bacteria 13339
185 Ga0501079_0072965 3300049741 Bacteria 2653
186 Ga0501080_0011365 3300049742 Bacteria 8152
187 Ga0501080_0071578 3300049742 Bacteria 3225
188 Ga0501080_0085372 3300049742 Bacteria 2933
189 Ga0501080_0094233 3300049742 Bacteria 2781
190 Ga0501081_0005465 3300049743 Bacteria 8202
191 Ga0501081_0013035 3300049743 Bacteria 5470
192 Ga0501083_0006357 3300049744 Bacteria 8373
193 Ga0501035_0043299 3300049822 Bacteria 4058
194 Ga0501035_0075212 3300049822 Bacteria 2987
195 Ga0501035_0263747 3300049822 Bacteria 1460
196 Ga0501044_0185669 3300049823 Bacteria 2044
197 Ga0501044_0288235 3300049823 Bacteria 1574
198 Ga0501045_0000148 3300049824 Bacteria 37279
199 Ga0501045_0001411 3300049824 Bacteria 16039
200 nmdc:mga0qj67_237043_c1 3300050509 Bacteria 1480
201 nmdc:mga06r32_134549_c1 3300050510 Bacteria 2446
202 nmdc:mga08y16_85689_c1 3300050511 Bacteria 3283
203 nmdc:mga0n895_13508_c1 3300050512 Bacteria 7371
204 nmdc:mga0n895_59740_c1 3300050512 Bacteria 3761
205 nmdc:mga0rr50_70258_c1 3300050513 Bacteria 2668
206 nmdc:mga0a205_10080_c1 3300050515 Bacteria 8671
207 Ga0500568_0003003 3300053139 Bacteria 9649
208 Ga0500616_0098991 3300053153 Bacteria 1429
209 Ga0501084_0009260 3300054114 Bacteria 8147
210 Ga0501084_0117379 3300054114 Bacteria 2237
211 Ga0501082_0014935 3300060353 Bacteria 6691
212 Ga0501082_0320872 3300060353 Bacteria 1349
213 Ga0530510_0016305 3300061734 Bacteria 5255
214 Ga0530510_0022044 3300061734 Bacteria 4535

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300044712 Ga0453684_1031657 Ga0453684_1031657_22_804 248
2 3300049822 Ga0501035_0075212 Ga0501035_0075212_15_809 263
3 3300005445 Ga0070708_100088278 Ga0070708_1000882783 273
4 3300049576 Ga0501040_0035387 Ga0501040_0035387_26_883 284
5 3300031344 Ga0265316_10032152 Ga0265316_100321524 285
6 3300049575 Ga0501039_0268785 Ga0501039_0268785_407_1321 285
7 3300025945 Ga0207679_10181585 Ga0207679_101815852 290
8 3300044712 Ga0453684_0114681 Ga0453684_0114681_31_1008 292
9 3300046684 Ga0495669_0004276 Ga0495669_0004276_3824_4753 294
10 3300032002 Ga0307416_100355873 Ga0307416_1003558731 295
11 3300031241 Ga0265325_10007262 Ga0265325_100072622 296
12 3300031595 Ga0265313_10067099 Ga0265313_100670992 296
13 3300006852 Ga0075433_10011374 Ga0075433_100113747 299
14 3300007076 Ga0075435_100014144 Ga0075435_1000141442 299
15 3300050512 nmdc:mga0n895_13508_c1 nmdc:mga0n895_13508_c1_4279_5247 299
16 3300050513 nmdc:mga0rr50_70258_c1 nmdc:mga0rr50_70258_c1_985_1953 299
17 3300050515 nmdc:mga0a205_10080_c1 nmdc:mga0a205_10080_c1_4471_5439 299
18 3300049578 Ga0501042_0218409 Ga0501042_0218409_413_1327 304
19 3300005937 Ga0081455_10049880 Ga0081455_100498802 305
20 3300031995 Ga0307409_100070307 Ga0307409_1000703073 305
21 3300044842 Ga0466957_0017101 Ga0466957_0017101_2495_3412 305
22 3300045836 Ga0466958_0181539 Ga0466958_0181539_88_1005 305
23 3300045976 Ga0466967_0264220 Ga0466967_0264220_640_1557 305
24 iso_pu_bacteria 2831935698 2831938181 305
25 iso_pu_bacteria 2856741275 2856746822 305
26 iso_pu_bacteria 2867507094 2867509984 305
27 iso_pu_bacteria 2891395885 2891404123 305
28 iso_pu_bacteria 2891562705 2891565086 305
29 3300006847 Ga0075431_100107585 Ga0075431_1001075852 306
30 3300009094 Ga0111539_10206876 Ga0111539_102068763 306
31 3300009553 Ga0105249_10123123 Ga0105249_101231232 306
32 3300049581 Ga0501047_0000466 Ga0501047_0000466_19356_20276 306
33 3300050509 nmdc:mga0qj67_237043_c1 nmdc:mga0qj67_237043_c1_97_1020 306
34 3300050510 nmdc:mga06r32_134549_c1 nmdc:mga06r32_134549_c1_838_1761 306
35 3300050511 nmdc:mga08y16_85689_c1 nmdc:mga08y16_85689_c1_1938_2924 306
36 3300049581 Ga0501047_0000809 Ga0501047_0000809_19532_20455 307
37 3300049592 Ga0501076_0012761 Ga0501076_0012761_1701_2627 307
38 3300049822 Ga0501035_0263747 Ga0501035_0263747_454_1380 307
39 3300049570 Ga0501033_0024296 Ga0501033_0024296_3158_4087 308
40 3300049572 Ga0501036_0012649 Ga0501036_0012649_3150_4079 308
41 3300049573 Ga0501037_0001199 Ga0501037_0001199_12530_13459 308
42 3300049574 Ga0501038_0009836 Ga0501038_0009836_3715_4644 308
43 3300049575 Ga0501039_0055489 Ga0501039_0055489_1808_2737 308
44 3300049576 Ga0501040_0000984 Ga0501040_0000984_8406_9335 308
45 3300049577 Ga0501041_0000137 Ga0501041_0000137_3619_4548 308
46 3300049578 Ga0501042_0003980 Ga0501042_0003980_1893_2822 308
47 3300049580 Ga0501046_0003553 Ga0501046_0003553_2462_3391 308
48 3300049582 Ga0501048_0002830 Ga0501048_0002830_1429_2358 308
49 3300049584 Ga0501068_0003376 Ga0501068_0003376_955_1884 308
50 3300049585 Ga0501069_0008562 Ga0501069_0008562_2725_3654 308
51 3300049587 Ga0501071_0018608 Ga0501071_0018608_2435_3364 308
52 3300049588 Ga0501072_0000585 Ga0501072_0000585_22845_23774 308
53 3300049592 Ga0501076_0002048 Ga0501076_0002048_9444_10373 308
54 3300049593 Ga0501077_0000881 Ga0501077_0000881_16424_17353 308
55 3300049741 Ga0501079_0002507 Ga0501079_0002507_3050_3979 308
56 3300049742 Ga0501080_0011365 Ga0501080_0011365_1936_2865 308
57 3300049743 Ga0501081_0005465 Ga0501081_0005465_654_1583 308
58 3300049744 Ga0501083_0006357 Ga0501083_0006357_2837_3766 308
59 3300049822 Ga0501035_0043299 Ga0501035_0043299_1789_2718 308
60 3300049824 Ga0501045_0000148 Ga0501045_0000148_9240_10169 308
61 3300054114 Ga0501084_0009260 Ga0501084_0009260_654_1583 308
62 3300060353 Ga0501082_0014935 Ga0501082_0014935_2613_3542 308
63 3300061734 Ga0530510_0016305 Ga0530510_0016305_1892_2821 308
64 3300009177 Ga0105248_10025143 Ga0105248_100251434 309
65 3300014968 Ga0157379_10089522 Ga0157379_100895223 309
66 3300020080 Ga0206350_10322873 Ga0206350_103228731 309
67 3300022467 Ga0224712_10035513 Ga0224712_100355131 309
68 3300025941 Ga0207711_10106848 Ga0207711_101068482 309
69 3300028800 Ga0265338_10210448 Ga0265338_102104482 309
70 3300031247 Ga0265340_10043004 Ga0265340_100430041 309
71 3300031712 Ga0265342_10063607 Ga0265342_100636073 309
72 3300037312 Ga0395899_0048749 Ga0395899_0048749_1625_2635 309
73 3300037312 Ga0395899_0067586 Ga0395899_0067586_1314_2300 309
74 3300037418 Ga0395900_0050354 Ga0395900_0050354_59_1069 309
75 3300037471 Ga0395905_0113606 Ga0395905_0113606_183_1169 309
76 3300038443 Ga0395901_0194353 Ga0395901_0194353_626_1636 309
77 3300044656 Ga0466969_0002816 Ga0466969_0002816_2818_3792 309
78 3300044684 Ga0466966_0010262 Ga0466966_0010262_4488_5462 309
79 3300044693 Ga0466961_0018047 Ga0466961_0018047_846_1820 309
80 3300044693 Ga0466961_0049172 Ga0466961_0049172_845_1819 309
81 3300044842 Ga0466957_0069859 Ga0466957_0069859_58_1032 309
82 3300044901 Ga0466960_0090045 Ga0466960_0090045_366_1373 309
83 3300045049 Ga0466959_0012487 Ga0466959_0012487_604_1578 309
84 3300045836 Ga0466958_0059483 Ga0466958_0059483_508_1482 309
85 3300032002 Ga0307416_100383930 Ga0307416_1003839302 310
86 3300035091 Ga0373951_0000440 Ga0373951_0000440_2060_3028 310
87 3300042876 Ga0451577_0007341 Ga0451577_0007341_2792_3760 310
88 3300042876 Ga0451577_0038162 Ga0451577_0038162_2362_3330 310
89 3300044712 Ga0453684_0088996 Ga0453684_0088996_1495_2463 310
90 iso_pu_bacteria 2866065130 2866071459 310
91 3300006852 Ga0075433_10095565 Ga0075433_100955652 311
92 3300006871 Ga0075434_100061883 Ga0075434_1000618832 311
93 3300031901 Ga0307406_10346565 Ga0307406_103465651 311
94 3300048905 Ga0496102_0465863 Ga0496102_0465863_103_1053 311
95 3300048919 Ga0496116_0000611 Ga0496116_0000611_19468_20418 311
96 3300048920 Ga0496117_0141594 Ga0496117_0141594_415_1365 311
97 3300048922 Ga0496119_0001976 Ga0496119_0001976_21947_22897 311
98 3300050512 nmdc:mga0n895_59740_c1 nmdc:mga0n895_59740_c1_1959_2906 311
99 3300042876 Ga0451577_0000144 Ga0451577_0000144_8458_9432 312
100 3300042876 Ga0451577_0045549 Ga0451577_0045549_1487_2461 312
101 3300044712 Ga0453684_0003604 Ga0453684_0003604_5280_6254 312
102 3300044712 Ga0453684_0152320 Ga0453684_0152320_662_1636 312
103 3300045051 Ga0451576_0003425 Ga0451576_0003425_888_1862 312
104 iso_pu_bacteria 2517572101 2517761674 312
105 iso_pu_bacteria 8002784119 8002785190 312
106 iso_pu_bacteria 3002998708 3003003595 313
107 3300005471 Ga0070698_100001735 Ga0070698_10000173523 314
108 3300009094 Ga0111539_10613699 Ga0111539_106136992 314
109 3300031901 Ga0307406_10113899 Ga0307406_101138993 314
110 3300049572 Ga0501036_0003482 Ga0501036_0003482_6155_7159 314
111 3300049573 Ga0501037_0216094 Ga0501037_0216094_252_1256 315
112 3300049579 Ga0501043_0036505 Ga0501043_0036505_301_1305 315
113 3300049581 Ga0501047_0011210 Ga0501047_0011210_650_1654 315
114 3300049590 Ga0501074_0001033 Ga0501074_0001033_669_1673 315
115 3300049823 Ga0501044_0185669 Ga0501044_0185669_994_1998 315
116 3300005841 Ga0068863_100001475 Ga0068863_10000147523 316
117 3300005842 Ga0068858_100101474 Ga0068858_1001014741 316
118 3300006931 Ga0097620_100002088 Ga0097620_10000208817 316
119 3300026035 Ga0207703_10132678 Ga0207703_101326782 316
120 3300005367 Ga0070667_100038711 Ga0070667_1000387115 317
121 3300005435 Ga0070714_100311952 Ga0070714_1003119522 317
122 3300006163 Ga0070715_10050621 Ga0070715_100506212 317
123 3300025905 Ga0207685_10033887 Ga0207685_100338872 317
124 3300025986 Ga0207658_10208728 Ga0207658_102087282 317
125 3300044684 Ga0466966_0006452 Ga0466966_0006452_3210_4163 317
126 3300044901 Ga0466960_0064345 Ga0466960_0064345_155_1180 317
127 3300045836 Ga0466958_0017965 Ga0466958_0017965_1115_2068 317
128 3300045976 Ga0466967_0281702 Ga0466967_0281702_190_1143 317
129 3300049581 Ga0501047_0180064 Ga0501047_0180064_58_1011 317
130 3300049823 Ga0501044_0288235 Ga0501044_0288235_586_1539 317
131 3300005618 Ga0068864_100609654 Ga0068864_1006096541 318
132 3300031507 Ga0307509_10158087 Ga0307509_101580873 318
133 3300049742 Ga0501080_0071578 Ga0501080_0071578_2125_3081 318
134 3300049574 Ga0501038_0008157 Ga0501038_0008157_3068_4045 319
135 iso_pu_bacteria 2508501039 2508671516 319
136 iso_pu_bacteria 2675902999 2676200800 319
137 iso_pu_bacteria 2687453737 2689963312 319
138 iso_pu_bacteria 2773857921 2774845378 319
139 iso_pu_bacteria 8002775197 8002783633 320
140 3300020080 Ga0206350_11575321 Ga0206350_115753211 321
141 3300049586 Ga0501070_0003632 Ga0501070_0003632_9239_10255 321
142 3300049742 Ga0501080_0085372 Ga0501080_0085372_1332_2348 321
143 3300021388 Ga0213875_10067999 Ga0213875_100679992 322
144 iso_pu_bacteria 2751185725 2753036507 322
145 iso_pu_bacteria 2751185792 2753324377 322
146 3300005617 Ga0068859_100000753 Ga0068859_1000007532 323
147 3300005844 Ga0068862_100000328 Ga0068862_10000032832 323
148 3300006931 Ga0097620_100000753 Ga0097620_1000007532 323
149 3300009177 Ga0105248_10000110 Ga0105248_1000011064 323
150 3300014325 Ga0163163_10106894 Ga0163163_101068942 323
151 3300028380 Ga0268265_10000124 Ga0268265_1000012429 323
152 3300049533 Ga0501317_005471 Ga0501317_005471_25_1014 323
153 3300049534 Ga0501318_003593 Ga0501318_003593_418_1407 323
154 3300049537 Ga0501321_009575 Ga0501321_009575_40_1029 323
155 3300053153 Ga0500616_0098991 Ga0500616_0098991_42_1013 323
156 3300013105 Ga0157369_10151443 Ga0157369_101514431 324
157 3300022467 Ga0224712_10082342 Ga0224712_100823421 324
158 3300053139 Ga0500568_0003003 Ga0500568_0003003_7257_8330 324
159 3300009101 Ga0105247_10000024 Ga0105247_10000024124 325
160 3300009177 Ga0105248_10001056 Ga0105248_1000105620 325
161 3300014968 Ga0157379_10025436 Ga0157379_100254363 325
162 3300025900 Ga0207710_10000045 Ga0207710_1000004557 325
163 3300025941 Ga0207711_10002931 Ga0207711_100029317 325
164 3300047444 Ga0495675_0096563 Ga0495675_0096563_338_1384 325
165 3300048917 Ga0496114_0419947 Ga0496114_0419947_126_1103 325
166 3300048922 Ga0496119_0001274 Ga0496119_0001274_23894_24946 325
167 3300048923 Ga0496120_0000892 Ga0496120_0000892_26870_27922 325
168 3300005563 Ga0068855_100004837 Ga0068855_1000048377 326
169 3300020069 Ga0197907_10513224 Ga0197907_105132241 326
170 3300025949 Ga0207667_10017976 Ga0207667_100179762 326
171 3300005329 Ga0070683_100025970 Ga0070683_1000259701 327
172 3300031995 Ga0307409_100143262 Ga0307409_1001432622 327
173 3300031995 Ga0307409_100414088 Ga0307409_1004140882 327
174 3300049568 Ga0501031_0043642 Ga0501031_0043642_384_1370 327
175 3300049569 Ga0501032_0082509 Ga0501032_0082509_148_1134 327
176 3300049572 Ga0501036_0162740 Ga0501036_0162740_511_1497 327
177 3300049575 Ga0501039_0045002 Ga0501039_0045002_1745_2731 327
178 3300049578 Ga0501042_0048777 Ga0501042_0048777_1855_2841 327
179 3300049587 Ga0501071_0059816 Ga0501071_0059816_978_1964 327
180 3300049590 Ga0501074_0092703 Ga0501074_0092703_82_1068 327
181 3300049741 Ga0501079_0072965 Ga0501079_0072965_103_1089 327
182 3300049742 Ga0501080_0094233 Ga0501080_0094233_209_1195 327
183 3300049743 Ga0501081_0013035 Ga0501081_0013035_380_1366 327
184 3300049824 Ga0501045_0001411 Ga0501045_0001411_14468_15454 327
185 3300054114 Ga0501084_0117379 Ga0501084_0117379_516_1502 327
186 3300060353 Ga0501082_0320872 Ga0501082_0320872_324_1310 327
187 3300061734 Ga0530510_0022044 Ga0530510_0022044_422_1408 327
188 3300003574 Ga0007410J51695_1005894 Ga0007410J51695_10058941 330
189 3300003577 Ga0007416J51690_1006938 Ga0007416J51690_10069381 330
190 3300003611 Ga0007411J51799_105318 Ga0007411J51799_1053181 330
191 3300005530 Ga0070679_100177985 Ga0070679_1001779852 330
192 3300020080 Ga0206350_11275283 Ga0206350_112752832 330
193 3300025921 Ga0207652_10106832 Ga0207652_101068322 330
194 3300035119 Ga0373956_0002326 Ga0373956_0002326_6532_7572 330
195 iso_pu_bacteria 2579778521 2579855126 330
196 iso_pu_bacteria 2619618881 2619853011 330
197 iso_pu_bacteria 2619619003 2620351549 330
198 iso_pu_bacteria 2626541554 2626637313 330
199 iso_pu_bacteria 8054913762 8054918044 330
200 iso_pu_bacteria 8054920844 8054926363 330
201 iso_pu_bacteria 8055157932 8055161222 330
202 3300005578 Ga0068854_100050034 Ga0068854_1000500343 331
203 3300005616 Ga0068852_100434513 Ga0068852_1004345132 331
204 3300009093 Ga0105240_10033446 Ga0105240_100334463 331
205 3300013104 Ga0157370_10001145 Ga0157370_1000114514 331
206 3300013105 Ga0157369_10006482 Ga0157369_100064827 331
207 3300020078 Ga0206352_10405733 Ga0206352_104057331 331
208 3300020080 Ga0206350_10062204 Ga0206350_100622042 331
209 3300020081 Ga0206354_10329741 Ga0206354_103297413 331
210 3300020082 Ga0206353_10977051 Ga0206353_109770512 331
211 3300022467 Ga0224712_10004247 Ga0224712_100042472 331
212 3300025913 Ga0207695_10022422 Ga0207695_100224227 331
213 3300025949 Ga0207667_10026746 Ga0207667_100267466 331
214 3300025981 Ga0207640_10081423 Ga0207640_100814233 331
215 3300026142 Ga0207698_10383393 Ga0207698_103833931 331
216 3300037466 Ga0395898_0010884 Ga0395898_0010884_6201_7226 331
217 3300048929 Ga0496126_0274961 Ga0496126_0274961_35_1045 331
218 iso_pu_bacteria 2506783011 2506869111 331
219 iso_pu_bacteria 2527291627 2528202273 331
220 iso_pu_bacteria 2527291629 2528214530 331
221 iso_pu_bacteria 2546825537 2546947287 331
222 iso_pu_bacteria 2576861822 2579749480 331
223 iso_pu_bacteria 2684623036 2686542284 331
224 iso_pu_bacteria 2710264753 2710603983 331
225 iso_pu_bacteria 2773857924 2774865581 331
226 iso_pu_bacteria 2773857933 2774901516 331
227 iso_pu_bacteria 637000116 637881869 331
228 3300005842 Ga0068858_100000143 Ga0068858_10000014331 333
229 3300009101 Ga0105247_10002854 Ga0105247_100028542 333
230 3300014968 Ga0157379_10000753 Ga0157379_1000075315 333
231 3300025900 Ga0207710_10000102 Ga0207710_1000010262 333
232 3300026035 Ga0207703_10000058 Ga0207703_1000005835 333
233 3300048905 Ga0496102_0022911 Ga0496102_0022911_2615_3631 333
234 3300048906 Ga0496103_0120461 Ga0496103_0120461_439_1455 333
235 3300048917 Ga0496114_0015169 Ga0496114_0015169_522_1538 333
236 3300048922 Ga0496119_0009397 Ga0496119_0009397_7047_8087 333
237 3300048924 Ga0496121_0164056 Ga0496121_0164056_96_1136 333
238 3300003162 Ga0006778J45830_1019565 Ga0006778J45830_10195651 341
239 3300003579 Ga0007429J51699_1014398 Ga0007429J51699_10143981 341
240 3300009098 Ga0105245_10064541 Ga0105245_100645412 341
241 3300025927 Ga0207687_10060819 Ga0207687_100608193 341
242 3300048908 Ga0496105_0055235 Ga0496105_0055235_1727_2752 341
243 3300048911 Ga0496108_0005470 Ga0496108_0005470_6940_7965 341
244 3300048912 Ga0496109_0020045 Ga0496109_0020045_815_1840 341
245 3300048913 Ga0496110_0012485 Ga0496110_0012485_1957_2982 341
246 3300048914 Ga0496111_0144517 Ga0496111_0144517_668_1693 341
247 3300048917 Ga0496114_0112265 Ga0496114_0112265_1219_2244 341

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00070

Pyr_redox

Pyridine nucleotide-disulphide oxidoreductase

146

223

0.93

PF00890

FAD_binding_2

FAD binding domain

6

47

0.91

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

5

294

0.88

PF13738

Pyr_redox_3

Pyridine nucleotide-disulphide oxidoreductase

43

277

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
5mh4-assembly1.cif.gz_A crystal structure of lactococcus lactis thioredoxin reductase (fr conformation) 0.9427 17 320
5mh4-assembly1.cif.gz_A crystal structure of lactococcus lactis thioredoxin reductase (fr conformation) 0.9337 17 320
4ccr-assembly2.cif.gz_D crystal structure of the thioredoxin reductase apoenzyme from entamoeba histolytica in the absence of the nadp cofactor 0.9229 14 319
3cty-assembly1.cif.gz_A crystal structure of t. acidophilum thioredoxin reductase 0.919 14 321
3cty-assembly1.cif.gz_A crystal structure of t. acidophilum thioredoxin reductase 0.9133 14 321
ID Description Score Start End Superfamily
5uthA02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9781 130 252 3.50.50.60
5uthA02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9704 130 252 3.50.50.60
4zn0C02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9656 130 252 3.50.50.60
5uthA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9629 14 320 3.50.50.60
3f8rD02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9565 130 252 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A7K0UV24-F1-model_v4 deleted 0.9882 16 133
AF-A0A3D5UWY6-F1-model_v4 Thioredoxin-disulfide reductase 0.9805 155 243 GO:0016491
AF-A0A6B3EPH4-F1-model_v4 FAD-dependent oxidoreductase 0.9778 126 238 GO:0016668
AF-K1UEN0-F1-model_v4 Protein containing Pyridine nucleotide-disulfide oxidoreductase, NAD-binding region domain protein (EC 1.-.-.-) 0.9777 153 217 GO:0016491
AF-A0A4Q5YUV9-F1-model_v4 deleted 0.977 17 103

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pLDDT pTM Quality
88.17 0.84 High
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Predicted Structure (AlphaFold2)

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