F358590

General Info

Members Datasets Scaffolds Average Seq Length
246 141 233 783

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2537561836|2538832487
Length 899
Sequence ACCHGSDNTPSTATDPVCGMTVDPATSRHQSVHDGQTFHFCCGGCKAKFEAEPARYLVATATHEHDHAAHGDAHGAHLVKDPVCDMSVDPHTAQHRAEHDGRPYHFCSARCREKFMADPAAYLGERQPAPAAPAGTVYTCPMHPEVQQVGPGHCPKCGMALEPMMPSLDEDDGGELRAMTRRFWWLVALTLPVFALAMGPHLFGWHLPAPWDGVAGWVEAVLASVVVLWGGAPFFGRGWRSLGLSLPSLPDRAGGGLAEAQGRTRERMSIRDRAMTQRHGQAVPAHRVAKQRGSAVTEGRVRRPWSPNMYTLIALGTGVAWLYSAVAFLLPGIFPDGFRDMHGRVAVYFESAAVIVTLVTLGDFLELRARRRTGAALKALLGLAPKTARRIAADGSEADVPLEQVQAGDVLRVRPGEKVPVDGVVIDGQSHVDESMLTGEPMPVVKAKDDAVTGGTVNQDGALTMRAQKVGGETLLAQIVALVAAAQRSRAPLQRVADKVAAWFVPAVVVAAVLAFAVWAMTGPEPRLAHALIAAVSVLIIACPCALGLATPISIMVASGRGAQHGVLFKDAGAIESLRDIDTLVVDKTGTLTEGKPALTELVVLGNQPREHLLALAAALERPSEHPLARAIVTAADAEGVPLLAATEFRSLTGSGVSATVDGSTVALGNARLMAESLAAISDDANARAEQLRQHGATVMFLAVDGTLAALLAVADRIKPDTPAAIQALHAAGLRIVMLTGDNATTAQSVARTLGIDEVHADVSPADKAAVVNRLKAEGRRVAMAGDGINDAPALAASDVGIAMGGGTDVAMESASVTLVRGELGAIVRARKLSQATVGNIHQNLFFAFVYNAVGVPLAAGVLYPWFGITLSPMIAALAMSLSSVSVVSNALRLRRAPL

Samples

Sample ID Description Type Environment
1 2537561836 Rhodanobacter spathiphylli B39 Isolate Unclassified
2 2643221562 Rhodanobacter sp. Root561 Isolate Unclassified
3 2643221577 Rhodanobacter sp. Root627 Isolate Unclassified
4 2643221685 Rhodanobacter sp. Root480 Isolate Unclassified
5 2687453130 Dyella thiooxydans ATSB10 Isolate Unclassified
6 2739367700 Dyella sp. YR388 Isolate Unclassified
7 2858950400 Achromobacter sp. K91 Isolate Unclassified
8 2881247448 Flavobacterium beibuense RSKm HC5 Isolate Rhizosphere
9 2884338543 Luteibacter pinisoli MAH-14 Isolate Rhizosphere
10 2895395659 Rhodanobacter sp. T12-5 Isolate Unclassified
11 2928963466 Dyella japonica 1073 Isolate Unclassified
12 2939611941 Rhodanobacter soli 1757 Isolate Rhizosphere
13 2941471342 Luteibacter sp. 621 Isolate Unclassified
14 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
15 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
16 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
17 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
18 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
19 3300002771 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB Metagenome Endosphere
20 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
21 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
22 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
23 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
24 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
25 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
26 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
27 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
28 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
29 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
30 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
31 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
32 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
33 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
34 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
35 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
36 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
37 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
38 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
39 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
40 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
41 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
42 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
43 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
44 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
45 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
46 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
47 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
50 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
51 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
52 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
53 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
54 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
55 3300015685 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.5_G12 Metagenome Unclassified
56 3300015687 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 002.1_G08 Metagenome Rhizosphere
57 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
58 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
59 3300025207 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
60 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
65 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
66 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
68 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
69 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
71 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
72 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
96 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
97 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
98 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
99 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
100 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
101 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
102 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
103 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
104 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
105 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
106 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
107 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
108 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
109 3300044661 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COC2E Metagenome Unclassified
110 3300044672 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA3E Metagenome Unclassified
111 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
112 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
113 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
114 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
115 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
116 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
117 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
118 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
119 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
120 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
121 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
122 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
123 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
124 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
125 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
126 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
127 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
131 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
134 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
135 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
136 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
137 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
139 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
140 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
141 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.09
Metatranscriptomes 1.63
Isolates 5.28

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.11
Nodule 0
Rhizoplane 0.41
Rhizosphere 65.45
Stem 0
Stem Tuber 0
Unclassified 15.04

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24741J21665_1002666 3300001915 Bacteria 4546
2 JGI24740J21852_10001650 3300001979 Bacteria 10237
3 JGI24740J21852_10008654 3300001979 Bacteria 4041
4 JGI25156J39149_1002381 3300002705 Bacteria 6808
5 JGI25162J39368_1000221 3300002737 Bacteria 59119
6 JGI25162J39368_1000861 3300002737 Bacteria 19922
7 JGI25162J39368_1001932 3300002737 Bacteria 9404
8 JGI25162J39368_1002975 3300002737 Bacteria 5634
9 JGI25157J39369_1000081 3300002741 Bacteria 85798
10 JGI25157J39369_1000864 3300002741 Bacteria 14703
11 JGI25163J39215_1000260 3300002771 Bacteria 19023
12 JGI25164J39214_1000028 3300002772 Bacteria 150310
13 JGI25164J39214_1000616 3300002772 Bacteria 15179
14 JGI25164J39214_1000623 3300002772 Bacteria 15027
15 JGI25165J46597_1000108 3300003214 Bacteria 150310
16 JGI25165J46597_1000943 3300003214 Bacteria 19926
17 JGI25165J46597_1002416 3300003214 Bacteria 6082
18 rootH2_10000275 3300003320 Bacteria 56950
19 Ga0055535_1000227 3300003761 Bacteria 59126
20 Ga0055542_1000261 3300003762 Bacteria 59119
21 Ga0055542_1000552 3300003762 Bacteria 33226
22 Ga0055529_1000078 3300003763 Bacteria 150310
23 Ga0055536_1004812 3300003781 Bacteria 6756
24 Ga0055531_10006304 3300003794 Bacteria 6756
25 Ga0065165_1007325 3300005262 Bacteria 5463
26 Ga0070680_100002562 3300005336 Bacteria 13446
27 Ga0070680_100014191 3300005336 Bacteria 6222
28 Ga0070660_100016300 3300005339 Bacteria 5391
29 Ga0070691_10006656 3300005341 Bacteria 5290
30 Ga0070691_10010795 3300005341 Bacteria 4166
31 Ga0070661_100004463 3300005344 Bacteria 9648
32 Ga0070659_100021648 3300005366 Bacteria 4900
33 Ga0070714_100001977 3300005435 Bacteria 14971
34 Ga0070681_10000063 3300005458 Bacteria 77422
35 Ga0070681_10005037 3300005458 Bacteria 12740
36 Ga0070681_10005434 3300005458 Bacteria 12311
37 Ga0070681_10013297 3300005458 Bacteria 8178
38 Ga0070681_10014336 3300005458 Bacteria 7888
39 Ga0070679_100000078 3300005530 Bacteria 73345
40 Ga0070679_100000402 3300005530 Bacteria 36897
41 Ga0070679_100009743 3300005530 Bacteria 9087
42 Ga0070679_100015553 3300005530 Bacteria 7311
43 Ga0068853_100083568 3300005539 Bacteria 2797
44 Ga0070696_100004075 3300005546 Bacteria 9749
45 Ga0070696_100008070 3300005546 Bacteria 7036
46 Ga0070696_100042793 3300005546 Bacteria 3131
47 Ga0068855_100009906 3300005563 Bacteria 11492
48 Ga0068857_100014568 3300005577 Bacteria 6858
49 Ga0068857_100019125 3300005577 Bacteria 6012
50 Ga0068854_100000574 3300005578 Bacteria 22018
51 Ga0068856_100001860 3300005614 Bacteria 22029
52 Ga0075430_100000508 3300006846 Bacteria 29229
53 Ga0075431_100017687 3300006847 Bacteria 7247
54 Ga0075435_100001894 3300007076 Bacteria 13619
55 Ga0105240_10006766 3300009093 Bacteria 16777
56 Ga0105240_10008972 3300009093 Bacteria 14213
57 Ga0111539_10006600 3300009094 Bacteria 14946
58 Ga0114129_10018484 3300009147 Bacteria 9925
59 Ga0105237_10000163 3300009545 Bacteria 94679
60 Ga0157373_10014637 3300013100 Bacteria 5751
61 Ga0157371_10016088 3300013102 Bacteria 5591
62 Ga0157370_10009431 3300013104 Bacteria 10430
63 Ga0157369_10003650 3300013105 Bacteria 18261
64 Ga0157369_10009869 3300013105 Bacteria 10909
65 Ga0157369_10093001 3300013105 Bacteria 3219
66 Ga0157372_10000860 3300013307 Bacteria 32907
67 Ga0157372_10178316 3300013307 Bacteria 2459
68 Ga0183369_1006 3300015685 Bacteria 449058
69 Ga0183368_1004 3300015687 Bacteria 1211761
70 Ga0206356_10415294 3300020070 Bacteria 11006
71 Ga0206354_10099410 3300020081 Bacteria 5496
72 Ga0206354_11062512 3300020081 Bacteria 5748
73 Ga0206354_11478108 3300020081 Bacteria 4168
74 Ga0209760_100279 3300025207 Bacteria 18449
75 Ga0209784_100047 3300025224 Bacteria 199596
76 Ga0209566_101371 3300025225 Bacteria 7585
77 Ga0209674_100016 3300025226 Bacteria 696756
78 Ga0209674_101459 3300025226 Bacteria 6213
79 Ga0209672_101205 3300025228 Bacteria 10487
80 Ga0207427_100013 3300025231 Bacteria 581419
81 Ga0207427_100115 3300025231 Bacteria 104282
82 Ga0207427_100130 3300025231 Bacteria 94510
83 Ga0207427_103034 3300025231 Bacteria 3853
84 Ga0209437_100015 3300025233 Bacteria 713457
85 Ga0209437_100020 3300025233 Bacteria 656374
86 Ga0209437_100079 3300025233 Bacteria 275948
87 Ga0209437_100106 3300025233 Bacteria 219071
88 Ga0209437_101002 3300025233 Bacteria 9870
89 Ga0209258_100043 3300025242 Bacteria 380685
90 Ga0209258_100779 3300025242 Bacteria 19400
91 Ga0209646_1000627 3300025246 Bacteria 13380
92 Ga0209026_1000047 3300025250 Bacteria 261867
93 Ga0209026_1000056 3300025250 Bacteria 236450
94 Ga0209026_1000105 3300025250 Bacteria 150738
95 Ga0209026_1001198 3300025250 Bacteria 12005
96 Ga0209148_1000002 3300025254 Bacteria 2399500
97 Ga0209148_1000010 3300025254 Bacteria 1265567
98 Ga0209759_1000318 3300025256 Bacteria 63865
99 Ga0209759_1001298 3300025256 Bacteria 14786
100 Ga0209759_1003437 3300025256 Bacteria 6314
101 Ga0209759_1006245 3300025256 Bacteria 4037
102 Ga0209233_1000009 3300025261 Bacteria 1265567
103 Ga0209233_1000020 3300025261 Bacteria 798224
104 Ga0209233_1000121 3300025261 Bacteria 233309
105 Ga0209233_1001412 3300025261 Bacteria 9471
106 Ga0209455_1000020 3300025272 Bacteria 702259
107 Ga0209455_1000218 3300025272 Bacteria 79966
108 Ga0209676_1005227 3300025292 Bacteria 6878
109 Ga0209256_1000921 3300025299 Bacteria 35969
110 Ga0209051_1002653 3300025303 Bacteria 12516
111 Ga0209257_1001484 3300025304 Bacteria 27531
112 Ga0207647_10000219 3300025904 Bacteria 46940
113 Ga0207647_10000731 3300025904 Bacteria 25802
114 Ga0207647_10001396 3300025904 Bacteria 18545
115 Ga0207705_10000995 3300025909 Bacteria 23115
116 Ga0207705_10001358 3300025909 Bacteria 19551
117 Ga0207705_10003836 3300025909 Bacteria 11438
118 Ga0207707_10000132 3300025912 Bacteria 77282
119 Ga0207707_10001212 3300025912 Bacteria 24251
120 Ga0207707_10001540 3300025912 Bacteria 21228
121 Ga0207707_10002815 3300025912 Bacteria 15510
122 Ga0207707_10004336 3300025912 Bacteria 12556
123 Ga0207707_10013181 3300025912 Bacteria 7206
124 Ga0207707_10022437 3300025912 Bacteria 5518
125 Ga0207695_10007609 3300025913 Bacteria 13728
126 Ga0207695_10011567 3300025913 Bacteria 10676
127 Ga0207695_10013586 3300025913 Bacteria 9700
128 Ga0207695_10014495 3300025913 Bacteria 9331
129 Ga0207671_10000582 3300025914 Bacteria 48826
130 Ga0207660_10000215 3300025917 Bacteria 37128
131 Ga0207660_10000516 3300025917 Bacteria 25769
132 Ga0207660_10003764 3300025917 Bacteria 9879
133 Ga0207660_10004007 3300025917 Bacteria 9601
134 Ga0207657_10005618 3300025919 Bacteria 13088
135 Ga0207657_10015524 3300025919 Bacteria 7377
136 Ga0207652_10000041 3300025921 Bacteria 130687
137 Ga0207652_10000145 3300025921 Bacteria 76311
138 Ga0207652_10000531 3300025921 Bacteria 38731
139 Ga0207652_10002128 3300025921 Bacteria 16996
140 Ga0207652_10034436 3300025921 Bacteria 4268
141 Ga0207664_10000318 3300025929 Bacteria 35841
142 Ga0207690_10000550 3300025932 Bacteria 24461
143 Ga0207690_10004298 3300025932 Bacteria 8408
144 Ga0207690_10008845 3300025932 Bacteria 5976
145 Ga0207679_10020485 3300025945 Bacteria 4463
146 Ga0207667_10000031 3300025949 Bacteria 323587
147 Ga0207667_10000481 3300025949 Bacteria 52931
148 Ga0207667_10006095 3300025949 Bacteria 14658
149 Ga0207667_10008637 3300025949 Bacteria 12081
150 Ga0207667_10009684 3300025949 Bacteria 11336
151 Ga0207640_10000082 3300025981 Bacteria 74895
152 Ga0207640_10009565 3300025981 Bacteria 5433
153 Ga0207639_10002678 3300026041 Bacteria 11958
154 Ga0207639_10023860 3300026041 Bacteria 4420
155 Ga0207678_10003038 3300026067 Bacteria 15177
156 Ga0207678_10003185 3300026067 Bacteria 14842
157 Ga0207678_10007219 3300026067 Bacteria 9850
158 Ga0207702_10000231 3300026078 Bacteria 64867
159 Ga0207702_10000976 3300026078 Bacteria 29314
160 Ga0207702_10018597 3300026078 Bacteria 5749
161 Ga0207674_10010245 3300026116 Bacteria 10645
162 Ga0207674_10027151 3300026116 Bacteria 6063
163 Ga0207674_10034425 3300026116 Bacteria 5294
164 Ga0207698_10001489 3300026142 Bacteria 13630
165 Ga0207698_10013020 3300026142 Bacteria 5472
166 Ga0207428_10069559 3300027907 Bacteria 2768
167 Ga0265318_10019320 3300028577 Bacteria 2765
168 Ga0265332_10001884 3300031238 Bacteria 11129
169 Ga0265328_10003301 3300031239 Bacteria 7130
170 Ga0265329_10003346 3300031242 Bacteria 7013
171 Ga0265331_10002420 3300031250 Bacteria 12662
172 Ga0265316_10041935 3300031344 Bacteria 3659
173 Ga0265314_10002885 3300031711 Bacteria 17072
174 Ga0316578_10015801 3300031728 Bacteria 4069
175 Ga0316584_0005969 3300036712 Bacteria 8225
176 Ga0395900_0049790 3300037418 Bacteria 4317
177 Ga0395901_0002374 3300038443 Bacteria 19146
178 Ga0436361_1222721 3300039447 Bacteria 3096
179 Ga0466969_0014564 3300044656 Bacteria 4135
180 Ga0466975_0029899 3300044661 Bacteria 3786
181 Ga0466982_0000010 3300044672 Bacteria 188341
182 Ga0466966_0000831 3300044684 Bacteria 19700
183 Ga0466966_0007665 3300044684 Bacteria 7154
184 Ga0466961_0003817 3300044693 Bacteria 9428
185 Ga0466961_0012768 3300044693 Bacteria 5380
186 Ga0466957_0005143 3300044842 Bacteria 7312
187 Ga0495638_0000049 3300046460 Bacteria 206725
188 Ga0495638_0000155 3300046460 Bacteria 108696
189 Ga0495650_0001476 3300046471 Bacteria 22558
190 Ga0495583_0000223 3300046506 Bacteria 95922
191 Ga0495625_0025585 3300046660 Bacteria 4474
192 Ga0495686_0000085 3300047472 Bacteria 198128
193 Ga0496115_0000024 3300048918 Bacteria 154488
194 Ga0496117_0008735 3300048920 Bacteria 9571
195 Ga0496117_0011515 3300048920 Bacteria 7918
196 Ga0496118_0001691 3300048921 Bacteria 32247
197 Ga0496118_0002225 3300048921 Bacteria 26793
198 Ga0496118_0002658 3300048921 Bacteria 23650
199 Ga0496119_0051713 3300048922 Bacteria 2522
200 Ga0496120_0000185 3300048923 Bacteria 106472
201 Ga0496121_0000851 3300048924 Bacteria 55282
202 Ga0496125_0008634 3300048928 Bacteria 10631
203 Ga0496126_0059307 3300048929 Bacteria 3446
204 Ga0496126_0068095 3300048929 Bacteria 3180
205 Ga0501034_0001951 3300049571 Bacteria 26110
206 Ga0501034_0087120 3300049571 Bacteria 3123
207 Ga0501037_0009902 3300049573 Bacteria 6993
208 Ga0501038_0054051 3300049574 Bacteria 3454
209 Ga0501039_0030472 3300049575 Bacteria 4160
210 Ga0501046_0004201 3300049580 Bacteria 13114
211 Ga0501047_0001025 3300049581 Bacteria 28116
212 Ga0501047_0011323 3300049581 Bacteria 8445
213 Ga0501047_0014753 3300049581 Bacteria 7435
214 Ga0501069_0000314 3300049585 Bacteria 22114
215 Ga0501069_0010893 3300049585 Bacteria 4818
216 Ga0501070_0000074 3300049586 Bacteria 84340
217 Ga0501070_0006749 3300049586 Bacteria 9773
218 Ga0501070_0017326 3300049586 Bacteria 6048
219 Ga0501070_0022372 3300049586 Bacteria 5295
220 Ga0501070_0026729 3300049586 Bacteria 4841
221 Ga0501074_0017555 3300049590 Bacteria 5194
222 Ga0501080_0002416 3300049742 Bacteria 16303
223 Ga0501080_0003477 3300049742 Bacteria 13873
224 Ga0501080_0008210 3300049742 Bacteria 9454
225 Ga0501080_0013065 3300049742 Bacteria 7624
226 Ga0501080_0027840 3300049742 Bacteria 5255
227 Ga0501035_0008292 3300049822 Bacteria 9679
228 Ga0501044_0012092 3300049823 Bacteria 9349
229 Ga0501044_0014771 3300049823 Bacteria 8419
230 Ga0501044_0039168 3300049823 Bacteria 4945
231 nmdc:mga05p37_121590_c1 3300050507 Bacteria 3207
232 nmdc:mga08y16_15588_c1 3300050511 Bacteria 7992
233 nmdc:mga0rr50_15250_c1 3300050513 Bacteria 5068

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300003781 Ga0055536_1004812 Ga0055536_10048125 703
2 3300003794 Ga0055531_10006304 Ga0055531_100063045 703
3 3300025292 Ga0209676_1005227 Ga0209676_10052275 703
4 3300025304 Ga0209257_1001484 Ga0209257_100148427 703
5 3300047472 Ga0495686_0000085 Ga0495686_0000085_60854_63043 710
6 3300048921 Ga0496118_0002658 Ga0496118_0002658_11909_14098 710
7 3300049742 Ga0501080_0003477 Ga0501080_0003477_10025_12319 710
8 3300025250 Ga0209026_1001198 Ga0209026_10011986 714
9 3300039447 Ga0436361_1222721 Ga0436361_1222721_279_2618 714
10 3300025226 Ga0209674_101459 Ga0209674_1014592 715
11 3300025233 Ga0209437_101002 Ga0209437_1010026 715
12 3300025303 Ga0209051_1002653 Ga0209051_10026533 717
13 3300025932 Ga0207690_10000550 Ga0207690_1000055015 717
14 3300005344 Ga0070661_100004463 Ga0070661_1000044635 719
15 iso_pu_bacteria 2895395659 2895398729 720
16 iso_pu_bacteria 2884338543 2884340057 722
17 3300002737 JGI25162J39368_1001932 JGI25162J39368_10019328 724
18 3300002772 JGI25164J39214_1000623 JGI25164J39214_10006237 724
19 3300003214 JGI25165J46597_1002416 JGI25165J46597_10024164 724
20 3300025231 Ga0207427_100130 Ga0207427_10013027 724
21 3300025233 Ga0209437_100020 Ga0209437_100020170 724
22 3300025261 Ga0209233_1000020 Ga0209233_1000020455 724
23 3300025261 Ga0209233_1001412 Ga0209233_10014122 724
24 3300049575 Ga0501039_0030472 Ga0501039_0030472_976_3588 725
25 3300025299 Ga0209256_1000921 Ga0209256_100092129 727
26 3300007076 Ga0075435_100001894 Ga0075435_1000018947 729
27 3300050513 nmdc:mga0rr50_15250_c1 nmdc:mga0rr50_15250_c1_1186_3588 729
28 3300028577 Ga0265318_10019320 Ga0265318_100193202 730
29 3300031238 Ga0265332_10001884 Ga0265332_100018843 730
30 3300031239 Ga0265328_10003301 Ga0265328_100033012 730
31 3300031242 Ga0265329_10003346 Ga0265329_100033463 730
32 3300031250 Ga0265331_10002420 Ga0265331_100024205 730
33 3300031711 Ga0265314_10002885 Ga0265314_100028856 730
34 3300005336 Ga0070680_100014191 Ga0070680_1000141917 733
35 3300005458 Ga0070681_10014336 Ga0070681_100143364 733
36 3300005530 Ga0070679_100009743 Ga0070679_1000097435 733
37 3300025912 Ga0207707_10001540 Ga0207707_1000154018 733
38 3300025917 Ga0207660_10003764 Ga0207660_100037646 733
39 3300025921 Ga0207652_10000531 Ga0207652_1000053128 733
40 3300031344 Ga0265316_10041935 Ga0265316_100419353 734
41 3300036712 Ga0316584_0005969 Ga0316584_0005969_2039_4456 734
42 3300046471 Ga0495650_0001476 Ga0495650_0001476_9493_11910 734
43 3300002737 JGI25162J39368_1000221 JGI25162J39368_100022117 735
44 3300002741 JGI25157J39369_1000081 JGI25157J39369_100008117 735
45 3300002771 JGI25163J39215_1000260 JGI25163J39215_100026010 735
46 3300002772 JGI25164J39214_1000028 JGI25164J39214_100002865 735
47 3300003214 JGI25165J46597_1000108 JGI25165J46597_100010865 735
48 3300003761 Ga0055535_1000227 Ga0055535_100022733 735
49 3300003762 Ga0055542_1000261 Ga0055542_100026117 735
50 3300003763 Ga0055529_1000078 Ga0055529_100007865 735
51 3300006846 Ga0075430_100000508 Ga0075430_10000050821 735
52 3300006847 Ga0075431_100017687 Ga0075431_1000176872 735
53 3300015685 Ga0183369_1006 Ga0183369_1006406 735
54 3300025207 Ga0209760_100279 Ga0209760_1002798 735
55 3300025224 Ga0209784_100047 Ga0209784_10004791 735
56 3300025231 Ga0207427_100013 Ga0207427_10001325 735
57 3300025233 Ga0209437_100015 Ga0209437_100015513 735
58 3300025242 Ga0209258_100043 Ga0209258_100043122 735
59 3300025246 Ga0209646_1000627 Ga0209646_10006278 735
60 3300025250 Ga0209026_1000047 Ga0209026_1000047122 735
61 3300025254 Ga0209148_1000010 Ga0209148_1000010402 735
62 3300025256 Ga0209759_1000318 Ga0209759_10003182 735
63 3300025261 Ga0209233_1000009 Ga0209233_1000009770 735
64 3300025272 Ga0209455_1000020 Ga0209455_1000020203 735
65 3300031728 Ga0316578_10015801 Ga0316578_100158012 736
66 3300049580 Ga0501046_0004201 Ga0501046_0004201_4492_6756 737
67 3300013105 Ga0157369_10093001 Ga0157369_100930013 738
68 3300005539 Ga0068853_100083568 Ga0068853_1000835681 739
69 3300026041 Ga0207639_10023860 Ga0207639_100238603 739
70 3300005339 Ga0070660_100016300 Ga0070660_1000163004 740
71 3300005546 Ga0070696_100042793 Ga0070696_1000427932 740
72 3300005458 Ga0070681_10013297 Ga0070681_100132974 741
73 3300005530 Ga0070679_100015553 Ga0070679_1000155533 741
74 3300005546 Ga0070696_100008070 Ga0070696_1000080704 741
75 3300005577 Ga0068857_100014568 Ga0068857_1000145683 741
76 3300013100 Ga0157373_10014637 Ga0157373_100146372 741
77 3300025912 Ga0207707_10013181 Ga0207707_100131814 741
78 3300025932 Ga0207690_10008845 Ga0207690_100088452 741
79 3300026116 Ga0207674_10027151 Ga0207674_100271515 741
80 3300037418 Ga0395900_0049790 Ga0395900_0049790_414_2960 741
81 iso_pu_bacteria 2858950400 2858954512 742
82 3300048920 Ga0496117_0008735 Ga0496117_0008735_7258_9534 743
83 3300048921 Ga0496118_0001691 Ga0496118_0001691_28_2304 743
84 3300046460 Ga0495638_0000049 Ga0495638_0000049_40649_43075 744
85 3300048918 Ga0496115_0000024 Ga0496115_0000024_90174_92612 744
86 3300038443 Ga0395901_0002374 Ga0395901_0002374_10421_12967 745
87 3300005614 Ga0068856_100001860 Ga0068856_10000186010 746
88 3300013105 Ga0157369_10009869 Ga0157369_100098695 746
89 3300026078 Ga0207702_10000231 Ga0207702_1000023156 746
90 3300049742 Ga0501080_0027840 Ga0501080_0027840_2120_4495 746
91 iso_pu_bacteria 2928963466 2928964188 746
92 3300046460 Ga0495638_0000155 Ga0495638_0000155_95768_98116 748
93 3300046506 Ga0495583_0000223 Ga0495583_0000223_6025_8370 748
94 3300049823 Ga0501044_0014771 Ga0501044_0014771_4491_7217 748
95 3300015687 Ga0183368_1004 Ga0183368_1004217 749
96 3300025226 Ga0209674_100016 Ga0209674_100016418 749
97 3300025250 Ga0209026_1000105 Ga0209026_100010554 749
98 3300003320 rootH2_10000275 rootH2_100002758 750
99 3300048929 Ga0496126_0059307 Ga0496126_0059307_82_2340 751
100 3300005262 Ga0065165_1007325 Ga0065165_10073253 752
101 3300009147 Ga0114129_10018484 Ga0114129_100184846 752
102 3300013105 Ga0157369_10003650 Ga0157369_1000365013 752
103 3300050507 nmdc:mga05p37_121590_c1 nmdc:mga05p37_121590_c1_18_2366 752
104 3300002705 JGI25156J39149_1002381 JGI25156J39149_10023814 754
105 3300002741 JGI25157J39369_1000864 JGI25157J39369_10008646 754
106 3300013307 Ga0157372_10178316 Ga0157372_101783161 754
107 3300025250 Ga0209026_1000056 Ga0209026_1000056238 754
108 3300025256 Ga0209759_1001298 Ga0209759_10012985 754
109 3300025904 Ga0207647_10000219 Ga0207647_100002194 754
110 3300048924 Ga0496121_0000851 Ga0496121_0000851_52911_55235 754
111 3300048928 Ga0496125_0008634 Ga0496125_0008634_8245_10569 754
112 3300048929 Ga0496126_0068095 Ga0496126_0068095_786_3110 754
113 3300049571 Ga0501034_0001951 Ga0501034_0001951_15376_17643 754
114 3300049581 Ga0501047_0001025 Ga0501047_0001025_15376_17643 754
115 3300049742 Ga0501080_0002416 Ga0501080_0002416_12986_15253 754
116 3300044661 Ga0466975_0029899 Ga0466975_0029899_420_2780 755
117 3300044693 Ga0466961_0003817 Ga0466961_0003817_1072_3432 755
118 3300044684 Ga0466966_0007665 Ga0466966_0007665_3974_6331 757
119 3300025225 Ga0209566_101371 Ga0209566_1013716 758
120 3300025242 Ga0209258_100779 Ga0209258_1007799 758
121 3300005366 Ga0070659_100021648 Ga0070659_1000216484 759
122 3300005458 Ga0070681_10005037 Ga0070681_100050377 759
123 3300005577 Ga0068857_100019125 Ga0068857_1000191251 759
124 3300025912 Ga0207707_10022437 Ga0207707_100224372 759
125 3300026116 Ga0207674_10034425 Ga0207674_100344253 759
126 3300048922 Ga0496119_0051713 Ga0496119_0051713_154_2490 759
127 3300048923 Ga0496120_0000185 Ga0496120_0000185_85152_87488 759
128 3300002737 JGI25162J39368_1000861 JGI25162J39368_10008618 760
129 3300002772 JGI25164J39214_1000616 JGI25164J39214_10006163 760
130 3300003214 JGI25165J46597_1000943 JGI25165J46597_10009438 760
131 3300009094 Ga0111539_10006600 Ga0111539_100066008 760
132 3300025231 Ga0207427_100115 Ga0207427_10011526 760
133 3300025233 Ga0209437_100079 Ga0209437_100079248 760
134 3300025261 Ga0209233_1000121 Ga0209233_1000121205 760
135 3300027907 Ga0207428_10069559 Ga0207428_100695591 760
136 3300050511 nmdc:mga08y16_15588_c1 nmdc:mga08y16_15588_c1_5284_7614 760
137 3300002737 JGI25162J39368_1002975 JGI25162J39368_10029755 761
138 3300003762 Ga0055542_1000552 Ga0055542_100055210 761
139 3300025231 Ga0207427_103034 Ga0207427_1030342 761
140 3300025233 Ga0209437_100106 Ga0209437_1001069 761
141 3300025254 Ga0209148_1000002 Ga0209148_10000021921 761
142 iso_pu_bacteria 2643221577 2643894429 761
143 iso_pu_bacteria 2643221685 2644476633 761
144 3300025228 Ga0209672_101205 Ga0209672_10120511 763
145 3300049571 Ga0501034_0087120 Ga0501034_0087120_642_2990 764
146 3300049573 Ga0501037_0009902 Ga0501037_0009902_4213_6909 764
147 3300049574 Ga0501038_0054051 Ga0501038_0054051_497_2845 764
148 3300046660 Ga0495625_0025585 Ga0495625_0025585_647_3073 766
149 iso_pu_bacteria 2687453130 2687582636 766
150 iso_pu_bacteria 2941471342 2941475153 766
151 3300013104 Ga0157370_10009431 Ga0157370_100094319 767
152 3300025272 Ga0209455_1000218 Ga0209455_100021875 767
153 3300048920 Ga0496117_0011515 Ga0496117_0011515_1269_3707 767
154 3300048921 Ga0496118_0002225 Ga0496118_0002225_18950_21388 767
155 3300044656 Ga0466969_0014564 Ga0466969_0014564_142_2754 768
156 3300044693 Ga0466961_0012768 Ga0466961_0012768_460_2832 768
157 3300044842 Ga0466957_0005143 Ga0466957_0005143_3216_5588 768
158 3300049586 Ga0501070_0017326 Ga0501070_0017326_991_3348 768
159 3300049823 Ga0501044_0012092 Ga0501044_0012092_3043_5697 768
160 3300005546 Ga0070696_100004075 Ga0070696_1000040753 769
161 3300044672 Ga0466982_0000010 Ga0466982_0000010_123893_126505 769
162 3300044684 Ga0466966_0000831 Ga0466966_0000831_11109_13721 769
163 3300049586 Ga0501070_0022372 Ga0501070_0022372_1929_4319 769
164 3300005563 Ga0068855_100009906 Ga0068855_1000099069 770
165 3300005578 Ga0068854_100000574 Ga0068854_10000057411 770
166 3300009093 Ga0105240_10006766 Ga0105240_1000676611 770
167 3300009093 Ga0105240_10008972 Ga0105240_100089723 770
168 3300009545 Ga0105237_10000163 Ga0105237_1000016379 770
169 3300025913 Ga0207695_10007609 Ga0207695_100076099 770
170 3300025913 Ga0207695_10014495 Ga0207695_100144954 770
171 3300025914 Ga0207671_10000582 Ga0207671_100005828 770
172 3300025921 Ga0207652_10034436 Ga0207652_100344363 770
173 3300025949 Ga0207667_10000031 Ga0207667_10000031120 770
174 3300025981 Ga0207640_10000082 Ga0207640_1000008260 770
175 iso_pu_bacteria 2881247448 2881250908 770
176 3300049586 Ga0501070_0000074 Ga0501070_0000074_57384_59711 771
177 3300049586 Ga0501070_0026729 Ga0501070_0026729_1504_3831 772
178 iso_pu_bacteria 2643221562 2643830527 773
179 3300001979 JGI24740J21852_10001650 JGI24740J21852_100016507 774
180 3300005435 Ga0070714_100001977 Ga0070714_1000019778 774
181 3300020070 Ga0206356_10415294 Ga0206356_104152948 774
182 3300020081 Ga0206354_11062512 Ga0206354_110625123 774
183 3300025256 Ga0209759_1003437 Ga0209759_10034371 774
184 3300025904 Ga0207647_10001396 Ga0207647_1000139611 774
185 3300025909 Ga0207705_10001358 Ga0207705_1000135812 774
186 3300025913 Ga0207695_10011567 Ga0207695_100115676 774
187 3300025917 Ga0207660_10004007 Ga0207660_100040076 774
188 3300025929 Ga0207664_10000318 Ga0207664_1000031830 774
189 3300025949 Ga0207667_10008637 Ga0207667_100086374 774
190 3300026078 Ga0207702_10000976 Ga0207702_1000097621 774
191 3300025256 Ga0209759_1006245 Ga0209759_10062452 775
192 iso_pu_bacteria 2739367700 2739730740 775
193 3300049585 Ga0501069_0000314 Ga0501069_0000314_13664_16027 776
194 3300049742 Ga0501080_0013065 Ga0501080_0013065_338_2722 776
195 3300026067 Ga0207678_10003038 Ga0207678_100030388 778
196 iso_pu_bacteria 2939611941 2939612313 778
197 iso_pu_bacteria 2537561836 2538832487 780
198 3300049581 Ga0501047_0011323 Ga0501047_0011323_4110_6527 781
199 3300049585 Ga0501069_0010893 Ga0501069_0010893_2123_4540 781
200 3300049586 Ga0501070_0006749 Ga0501070_0006749_177_2594 781
201 3300049590 Ga0501074_0017555 Ga0501074_0017555_2133_4550 781
202 3300049742 Ga0501080_0008210 Ga0501080_0008210_883_3300 781
203 3300049822 Ga0501035_0008292 Ga0501035_0008292_2115_4532 781
204 3300049823 Ga0501044_0039168 Ga0501044_0039168_761_3178 781
205 3300020081 Ga0206354_11478108 Ga0206354_114781082 782
206 3300005458 Ga0070681_10005434 Ga0070681_100054342 785
207 3300005530 Ga0070679_100000402 Ga0070679_1000004028 785
208 3300013307 Ga0157372_10000860 Ga0157372_1000086034 785
209 3300025912 Ga0207707_10004336 Ga0207707_100043362 785
210 3300025921 Ga0207652_10000145 Ga0207652_1000014569 785
211 3300001979 JGI24740J21852_10008654 JGI24740J21852_100086542 789
212 3300020081 Ga0206354_10099410 Ga0206354_100994103 789
213 3300025904 Ga0207647_10000731 Ga0207647_1000073122 789
214 3300025909 Ga0207705_10000995 Ga0207705_1000099518 789
215 3300025909 Ga0207705_10003836 Ga0207705_100038362 789
216 3300025912 Ga0207707_10001212 Ga0207707_1000121215 789
217 3300025919 Ga0207657_10005618 Ga0207657_100056189 789
218 3300025949 Ga0207667_10000481 Ga0207667_1000048115 789
219 3300026116 Ga0207674_10010245 Ga0207674_100102457 789
220 3300026142 Ga0207698_10013020 Ga0207698_100130207 789
221 3300049581 Ga0501047_0014753 Ga0501047_0014753_2595_4991 789
222 3300025917 Ga0207660_10000516 Ga0207660_1000051616 790
223 3300025921 Ga0207652_10002128 Ga0207652_100021288 790
224 3300026067 Ga0207678_10007219 Ga0207678_100072197 790
225 3300026078 Ga0207702_10018597 Ga0207702_100185979 790
226 3300025945 Ga0207679_10020485 Ga0207679_100204853 792
227 3300005341 Ga0070691_10010795 Ga0070691_100107952 795
228 3300013102 Ga0157371_10016088 Ga0157371_100160883 795
229 3300025913 Ga0207695_10013586 Ga0207695_100135864 795
230 3300025919 Ga0207657_10015524 Ga0207657_100155247 795
231 3300025932 Ga0207690_10004298 Ga0207690_100042983 795
232 3300025949 Ga0207667_10009684 Ga0207667_100096843 795
233 3300025981 Ga0207640_10009565 Ga0207640_100095656 795
234 3300026041 Ga0207639_10002678 Ga0207639_1000267811 795
235 3300026067 Ga0207678_10003185 Ga0207678_100031857 795
236 3300026142 Ga0207698_10001489 Ga0207698_100014894 795
237 3300001915 JGI24741J21665_1002666 JGI24741J21665_10026667 803
238 3300005336 Ga0070680_100002562 Ga0070680_1000025627 803
239 3300005341 Ga0070691_10006656 Ga0070691_100066562 803
240 3300005458 Ga0070681_10000063 Ga0070681_1000006361 803
241 3300005530 Ga0070679_100000078 Ga0070679_10000007861 803
242 3300025912 Ga0207707_10000132 Ga0207707_1000013259 803
243 3300025912 Ga0207707_10002815 Ga0207707_1000281511 803
244 3300025917 Ga0207660_10000215 Ga0207660_1000021523 803
245 3300025921 Ga0207652_10000041 Ga0207652_1000004137 803
246 3300025949 Ga0207667_10006095 Ga0207667_100060959 803

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00122

E1-E2_ATPase

E1-E2 ATPase

382

565

0.99

PF04945

YHS

YHS domain

79

126

0.97

PF19335

HMBD

Heavy metal binding domain

137

164

0.97

PF04945

YHS

YHS domain

13

60

0.96

PF00702

Hydrolase

haloacid dehalogenase-like hydrolase

581

799

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
2voy-assembly1.cif.gz_F cryoem model of copa, the copper transporting atpase from archaeoglobus fulgidus 0.9478 277 383
2voy-assembly1.cif.gz_J cryoem model of copa, the copper transporting atpase from archaeoglobus fulgidus 0.94 495 616
2b8e-assembly2.cif.gz_B copa atp binding domain 0.9317 481 733
2voy-assembly1.cif.gz_J cryoem model of copa, the copper transporting atpase from archaeoglobus fulgidus 0.9248 495 616
2voy-assembly1.cif.gz_I cryoem model of copa, the copper transporting atpase from archaeoglobus fulgidus 0.9216 619 731
ID Description Score Start End Superfamily
af_Q9VYT4_1008_1079_3.40.50.1000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.9883 659 728 3.40.50.1000
4bbjA03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.9868 619 723 3.40.50.1000
af_A4HSA9_484_624_3.40.50.1000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.9786 620 703 3.40.50.1000
af_Q0J4V8_1_120_3.40.50.1000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.9778 637 751 3.40.50.1000
af_Q557B5_1074_1224_3.40.50.1000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.9776 615 744 3.40.50.1000
ID Description Score Start End GO Terms
AF-V5IE67-F1-model_v4 Putative atpase cu++ transporting alpha polypeptide 0.97 615 748 GO:0005507
GO:0005524
GO:0005802
GO:0005886
GO:0006878
GO:0015677
GO:0016887
GO:0043682
GO:0060003
AF-A0A6N3U5Y9-F1-model_v4 deleted 0.9639 450 618
AF-A0A6B0Z3K8-F1-model_v4 HAD-IC family P-type ATPase 0.9632 639 768 GO:0005507
GO:0005524
GO:0016020
GO:0016887
GO:0043682
GO:0055070
AF-A0A6N3U5Y9-F1-model_v4 deleted 0.9583 450 618
AF-A0A2T5IVR8-F1-model_v4 Uncharacterized protein 0.9581 496 619 GO:0000166
GO:0016020
GO:0022857

Feature Viewer

pLDDT pTM Quality
77.7 0.68 Medium
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Predicted Structure (AlphaFold2)

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