F357591

General Info

Members Datasets Scaffolds Average Seq Length
245 169 490 318

Family's Representative Sequence

Representative Sequence 3300044684|Ga0466966_0007722|Ga0466966_0007722_5572_6615
Length 347
Sequence MNRELDAAGITEPALRASYTRCRELNAAHGRTYFLATRLLTPAQRPAIHALYGLARYADEIVDDLSDTRPWPDRVAELDALGQQLRDGLAAGRSDHPVLAAPVHTAVRYQINPQHFADFMVSMRMDRPVEQGGVAGYQTFDELARYVYGSAAVIGLQVLPVLGTVVPRERAEPHAAALGIAFQITNFLRDVGEDLDRGRVYLPANELASFGVDRELLGWCRRTGQPDRRVRRAVAYLVARTRAIYRRAAPGIPMLAPVSRACVTTAFRLYGGILDEIEAADYHILARRVAVPNHRRIAVALPGLSRALLARTVSPGPASQPGERAPDQRSRYRDQVSSPGPRDPASP

Samples

Sample ID Description Type Environment
1 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
10 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
11 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
12 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
13 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
14 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
15 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
16 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
28 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
29 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
30 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
33 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
34 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
35 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
36 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
40 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
43 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
44 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
47 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
48 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
49 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
50 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
51 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
52 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
53 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
54 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
55 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
56 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
79 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
80 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
81 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
82 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
83 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
84 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
85 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
86 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
87 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
88 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
89 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
90 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
91 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
92 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
93 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
94 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
95 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
96 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
97 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
98 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
99 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
100 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
101 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
102 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
103 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
104 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
105 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
106 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
107 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
108 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
109 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
110 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
111 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
112 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
113 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
114 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
115 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
116 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
117 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
118 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
119 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
120 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
121 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
122 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
123 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
124 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
125 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
126 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
127 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
128 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
129 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
131 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
133 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
134 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
135 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
137 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
138 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
139 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
140 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
142 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
143 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
144 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
145 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
146 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
147 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
148 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
149 2547132424 Nocardia nova SH22a Isolate Unclassified
150 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
151 2643221692 Nocardia sp. Root136 Isolate Unclassified
152 2643221715 Mycobacterium sp. Root265 Isolate Unclassified
153 2738541274 Mycobacterium sp. YR708 Isolate Unclassified
154 2738543028 Mycobacterium sp. YR782 Isolate Unclassified
155 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
156 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
157 2791354901 Actinophytocola xanthii 11-183 Isolate Rhizosphere
158 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
159 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
160 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
161 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber
162 2902810491 Mycolicibacterium sp. P9-22 Isolate Unclassified
163 2915358134 Pseudonocardia pini CAP47R Isolate Unclassified
164 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
165 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
166 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
167 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
168 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
169 8054472261 Pseudonocardia terrae RS11V-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.61
Metatranscriptomes 0
Isolates 9.39

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.86
Nodule 0
Rhizoplane 5.71
Rhizosphere 74.29
Stem 0
Stem Tuber 0.41
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466966_0007722 3300044684 Bacteria 7124
2 Ga0070658_10175131 3300005327 Bacteria 1804
3 Ga0070676_10064803 3300005328 Bacteria 2180
4 Ga0070683_100111357 3300005329 Bacteria 2582
5 Ga0070683_100131229 3300005329 Bacteria 2371
6 Ga0068869_100191686 3300005334 Bacteria 1608
7 Ga0070680_100012967 3300005336 Bacteria 6483
8 Ga0070682_100091862 3300005337 Bacteria 1988
9 Ga0068868_100129707 3300005338 Bacteria 2062
10 Ga0070691_10022252 3300005341 Bacteria 2940
11 Ga0070668_100197165 3300005347 Bacteria 1652
12 Ga0070671_100002132 3300005355 Bacteria 15274
13 Ga0070709_10266828 3300005434 Bacteria 1239
14 Ga0070714_100038214 3300005435 Bacteria 4036
15 Ga0070714_100183983 3300005435 Bacteria 1903
16 Ga0070713_100220649 3300005436 Bacteria 1720
17 Ga0070713_100227642 3300005436 Bacteria 1694
18 Ga0070710_10009483 3300005437 Bacteria 4762
19 Ga0070710_10018592 3300005437 Bacteria 3577
20 Ga0070663_100015350 3300005455 Bacteria 4942
21 Ga0070681_10011399 3300005458 Bacteria 8797
22 Ga0070681_10123553 3300005458 Bacteria 2521
23 Ga0070685_10077477 3300005466 Bacteria 1985
24 Ga0070679_100120765 3300005530 Bacteria 2605
25 Ga0070679_100333180 3300005530 Bacteria 1466
26 Ga0070684_100067971 3300005535 Bacteria 3131
27 Ga0070684_100404151 3300005535 Bacteria 1259
28 Ga0070693_100037966 3300005547 Bacteria 2689
29 Ga0070665_100011229 3300005548 Bacteria 9056
30 Ga0070665_100252283 3300005548 Bacteria 1765
31 Ga0068854_100256437 3300005578 Bacteria 1399
32 Ga0068856_100277559 3300005614 Bacteria 1692
33 Ga0070702_100000113 3300005615 Bacteria 24389
34 Ga0070702_100097055 3300005615 Bacteria 1800
35 Ga0068852_100200462 3300005616 Bacteria 1888
36 Ga0068866_10059873 3300005718 Bacteria 1972
37 Ga0068851_10081309 3300005834 Bacteria 1692
38 Ga0068870_10066421 3300005840 Bacteria 1953
39 Ga0068870_10105395 3300005840 Bacteria 1601
40 Ga0068863_100387514 3300005841 Bacteria 1365
41 Ga0068860_100004869 3300005843 Bacteria 13678
42 Ga0070717_10344244 3300006028 Bacteria 1332
43 Ga0070717_10431103 3300006028 Bacteria 1186
44 Ga0075364_10092895 3300006051 Bacteria 2003
45 Ga0070712_100146634 3300006175 Bacteria 1807
46 Ga0075430_100049113 3300006846 Bacteria 3562
47 Ga0111539_10264655 3300009094 Bacteria 2001
48 Ga0105245_10584025 3300009098 Bacteria 1142
49 Ga0105243_10022213 3300009148 Bacteria 4820
50 Ga0105241_10236807 3300009174 Bacteria 1541
51 Ga0105249_10083541 3300009553 Bacteria 2973
52 Ga0105239_10309275 3300010375 Bacteria 1781
53 Ga0105246_10077450 3300011119 Bacteria 2359
54 Ga0157371_10135155 3300013102 Bacteria 1756
55 Ga0157370_10151987 3300013104 Bacteria 2154
56 Ga0157369_10512582 3300013105 Bacteria 1241
57 Ga0157375_10264778 3300013308 Bacteria 1881
58 Ga0163163_10175730 3300014325 Bacteria 2188
59 Ga0163163_10522320 3300014325 Bacteria 1249
60 Ga0157380_10253793 3300014326 Bacteria 1593
61 Ga0157380_10349044 3300014326 Bacteria 1384
62 Ga0182008_10121787 3300014497 Bacteria 1297
63 Ga0157377_10199799 3300014745 Bacteria 1268
64 Ga0157379_10056568 3300014968 Bacteria 3504
65 Ga0163161_10132782 3300017792 Bacteria 1879
66 Ga0213873_10000189 3300021358 Bacteria 11231
67 Ga0213876_10014223 3300021384 Bacteria 4218
68 Ga0213876_10112992 3300021384 Bacteria 1441
69 Ga0213875_10001025 3300021388 Bacteria 19827
70 Ga0213875_10002646 3300021388 Bacteria 10595
71 Ga0213875_10010697 3300021388 Bacteria 4588
72 Ga0213875_10018950 3300021388 Bacteria 3313
73 Ga0207692_10179873 3300025898 Bacteria 1231
74 Ga0207699_10241168 3300025906 Bacteria 1242
75 Ga0207643_10037672 3300025908 Bacteria 2713
76 Ga0207707_10012910 3300025912 Bacteria 7271
77 Ga0207663_10075007 3300025916 Bacteria 2193
78 Ga0207663_10202182 3300025916 Bacteria 1434
79 Ga0207660_10045809 3300025917 Bacteria 3083
80 Ga0207652_10012626 3300025921 Bacteria 6828
81 Ga0207700_10383300 3300025928 Bacteria 1230
82 Ga0207664_10027881 3300025929 Bacteria 4287
83 Ga0207664_10273435 3300025929 Bacteria 1480
84 Ga0207664_10409982 3300025929 Bacteria 1206
85 Ga0207644_10013550 3300025931 Bacteria 5439
86 Ga0207686_10125842 3300025934 Bacteria 1751
87 Ga0207689_10144138 3300025942 Bacteria 1963
88 Ga0207689_10187550 3300025942 Bacteria 1706
89 Ga0207661_10055003 3300025944 Bacteria 3190
90 Ga0207677_10138793 3300026023 Bacteria 1858
91 Ga0207703_10158491 3300026035 Bacteria 1980
92 Ga0207678_10000057 3300026067 Bacteria 86102
93 Ga0207678_10244256 3300026067 Bacteria 1538
94 Ga0207702_10168997 3300026078 Bacteria 2003
95 Ga0207641_10093160 3300026088 Bacteria 2640
96 Ga0207674_10019865 3300026116 Bacteria 7270
97 Ga0207674_10102839 3300026116 Bacteria 2836
98 Ga0207674_10417094 3300026116 Bacteria 1297
99 Ga0207683_10253971 3300026121 Bacteria 1605
100 Ga0207683_10292847 3300026121 Bacteria 1488
101 Ga0268266_10026791 3300028379 Bacteria 4905
102 Ga0268266_10117181 3300028379 Bacteria 2366
103 Ga0268266_10270632 3300028379 Bacteria 1577
104 Ga0268264_10002441 3300028381 Bacteria 16343
105 Ga0307513_10006534 3300031456 Bacteria 15227
106 Ga0307514_10048995 3300031649 Bacteria 3287
107 Ga0307413_10253430 3300031824 Bacteria 1307
108 Ga0307406_10147870 3300031901 Bacteria 1672
109 Ga0307414_10124817 3300032004 Bacteria 1987
110 Ga0373931_0139689 3300035691 Bacteria 1402
111 Ga0436364_0085858 3300037853 Bacteria 16249
112 Ga0436364_0466238 3300037853 Bacteria 6810
113 Ga0436364_0499509 3300037853 Bacteria 94496
114 Ga0436364_1188778 3300037853 Bacteria 3517
115 Ga0436364_1375330 3300037853 Bacteria 10166
116 Ga0436365_0907214 3300039437 Bacteria 2596
117 Ga0436365_1572675 3300039437 Bacteria 39347
118 Ga0436365_1826047 3300039437 Bacteria 17805
119 Ga0436363_0172157 3300039450 Bacteria 1625
120 Ga0436362_1080049 3300039453 Bacteria 54319
121 Ga0439461_0002757 3300041410 Bacteria 2840
122 Ga0439466_0001892 3300041411 Bacteria 8195
123 Ga0439465_0012492 3300041413 Bacteria 2654
124 Ga0439431_0013640 3300041997 Bacteria 1876
125 Ga0439445_0015412 3300042004 Bacteria 1871
126 Ga0450903_001262 3300042138 Bacteria 4756
127 Ga0439458_0000512 3300042157 Bacteria 9949
128 Ga0439434_0014829 3300042435 Bacteria 2319
129 Ga0466972_0017653 3300044658 Bacteria 3571
130 Ga0466972_0024056 3300044658 Bacteria 3025
131 Ga0466965_0002229 3300044683 Bacteria 8163
132 Ga0466965_0003108 3300044683 Bacteria 7236
133 Ga0466965_0006832 3300044683 Bacteria 5211
134 Ga0466961_0002777 3300044693 Bacteria 10882
135 Ga0466963_0003278 3300044694 Bacteria 9226
136 Ga0466963_0008778 3300044694 Bacteria 6071
137 Ga0466963_0021341 3300044694 Bacteria 4084
138 Ga0466963_0048154 3300044694 Bacteria 2815
139 Ga0466963_0219260 3300044694 Bacteria 1332
140 Ga0466971_0013338 3300044719 Bacteria 3608
141 Ga0466971_0030004 3300044719 Bacteria 2433
142 Ga0466968_0000605 3300044735 Bacteria 12223
143 Ga0466968_0020904 3300044735 Bacteria 2646
144 Ga0466968_0107758 3300044735 Bacteria 1250
145 Ga0466970_0000911 3300044765 Bacteria 14307
146 Ga0466957_0002860 3300044842 Bacteria 9344
147 Ga0466957_0031073 3300044842 Bacteria 3190
148 Ga0466957_0034904 3300044842 Bacteria 3017
149 Ga0466957_0128720 3300044842 Bacteria 1620
150 Ga0466960_0000186 3300044901 Bacteria 21341
151 Ga0466960_0000694 3300044901 Bacteria 11740
152 Ga0466960_0019119 3300044901 Bacteria 3013
153 Ga0466960_0085495 3300044901 Bacteria 1598
154 Ga0466960_0085561 3300044901 Bacteria 1597
155 Ga0466959_0004926 3300045049 Bacteria 9042
156 Ga0466959_0025592 3300045049 Bacteria 4375
157 Ga0466959_0131577 3300045049 Bacteria 1773
158 Ga0466958_0013979 3300045836 Bacteria 4578
159 Ga0466958_0028834 3300045836 Bacteria 3293
160 Ga0466958_0140359 3300045836 Bacteria 1521
161 Ga0466967_0000587 3300045976 Bacteria 18002
162 Ga0466967_0007817 3300045976 Bacteria 7767
163 Ga0466967_0014364 3300045976 Bacteria 6166
164 Ga0466967_0090100 3300045976 Bacteria 2786
165 Ga0466967_0478059 3300045976 Bacteria 1220
166 Ga0495607_0012498 3300046501 Bacteria 5601
167 Ga0495606_0054370 3300046507 Bacteria 2593
168 Ga0495683_0001715 3300047323 Bacteria 13892
169 Ga0496100_0001117 3300048903 Bacteria 13011
170 Ga0496101_0032238 3300048904 Bacteria 3686
171 Ga0496102_0000018 3300048905 Bacteria 266847
172 Ga0496102_0306349 3300048905 Bacteria 1497
173 Ga0496103_0000115 3300048906 Bacteria 87402
174 Ga0496104_0111694 3300048907 Bacteria 2620
175 Ga0496107_0101506 3300048910 Bacteria 2109
176 Ga0496108_0297300 3300048911 Bacteria 1406
177 Ga0496108_0465197 3300048911 Bacteria 1105
178 Ga0496109_0033214 3300048912 Bacteria 4642
179 Ga0496110_0168428 3300048913 Bacteria 1987
180 Ga0496110_0342326 3300048913 Bacteria 1362
181 Ga0496111_0188955 3300048914 Bacteria 1531
182 Ga0496113_0376367 3300048916 Bacteria 1140
183 Ga0496116_0000235 3300048919 Bacteria 101562
184 Ga0496117_0000236 3300048920 Bacteria 104683
185 Ga0496118_0000100 3300048921 Bacteria 160138
186 Ga0496119_0001940 3300048922 Bacteria 23566
187 Ga0496121_0006017 3300048924 Bacteria 15306
188 Ga0496124_0047917 3300048927 Bacteria 3653
189 Ga0496126_0000022 3300048929 Bacteria 464393
190 Ga0496126_0000327 3300048929 Bacteria 101544
191 Ga0496126_0040813 3300048929 Bacteria 4300
192 Ga0501032_0028471 3300049569 Bacteria 3839
193 Ga0501032_0132581 3300049569 Bacteria 1643
194 Ga0501033_0013254 3300049570 Bacteria 6279
195 Ga0501034_0002090 3300049571 Bacteria 24950
196 Ga0501034_0107609 3300049571 Bacteria 2780
197 Ga0501036_0028258 3300049572 Bacteria 4741
198 Ga0501036_0068590 3300049572 Bacteria 3001
199 Ga0501037_0006342 3300049573 Bacteria 8647
200 Ga0501046_0001749 3300049580 Bacteria 20736
201 Ga0501047_0010722 3300049581 Bacteria 8662
202 Ga0501047_0062259 3300049581 Bacteria 3599
203 Ga0501047_0144994 3300049581 Bacteria 2252
204 Ga0501048_0014622 3300049582 Bacteria 5808
205 Ga0501069_0032479 3300049585 Bacteria 2873
206 Ga0501070_0002247 3300049586 Bacteria 16967
207 Ga0501081_0150831 3300049743 Bacteria 1670
208 Ga0501035_0002077 3300049822 Bacteria 19931
209 Ga0501035_0009822 3300049822 Bacteria 8889
210 Ga0501044_0000376 3300049823 Bacteria 55707
211 Ga0501044_0018247 3300049823 Bacteria 7522
212 Ga0501044_0400135 3300049823 Bacteria 1286
213 nmdc:mga03n38_15110_c1 3300050490 Bacteria 2974
214 nmdc:mga00v17_2271_c1 3300050491 Bacteria 9858
215 nmdc:mga07m45_109635_c1 3300050496 Bacteria 1589
216 nmdc:mga07m45_171363_c1 3300050496 Bacteria 1261
217 nmdc:mga08y16_572327_c1 3300050511 Bacteria 1141
218 nmdc:mga0sz30_129786_c1 3300050516 Bacteria 1110
219 Ga0500627_0013010 3300053158 Bacteria 3139
220 Ga0466962_0002281 3300061719 Bacteria 9089
221 Ga0466962_0024924 3300061719 Bacteria 2872
222 Ga0466962_0092356 3300061719 Bacteria 1451
223 2548694608 2547132424 Bacteria 8348532
224 2552107106 2551306166 Bacteria 9731570
225 2644511615 2643221692 Bacteria 7282860
226 2644637069 2643221715 Bacteria 6671032
227 2738703755 2738541274 Bacteria 6909446
228 2738707466 2738541274 Bacteria 6909446
229 2739330644 2738543028 Bacteria 6917070
230 2739333962 2738543028 Bacteria 6917070
231 2753076914 2751185734 Bacteria 8863695
232 2786666967 2786546132 Bacteria 10419719
233 2791911440 2791354901 Bacteria 8322202
234 2816504227 2816332139 Bacteria 9138787
235 2863073975 2863067949 Bacteria 8541735
236 2866615130 2866612099 Bacteria 7543886
237 2899371113 2899370129 Bacteria 6781179
238 2902814781 2902810491 Bacteria 6794147
239 2915361691 2915358134 Bacteria 6050864
240 2954682052 2954673503 Bacteria 9685905
241 2954690873 2954682443 Bacteria 9862841
242 2990092450 2990088156 Bacteria 6657676
243 8003317631 8003314358 Bacteria 10575343
244 8047718956 8047710418 Bacteria 11023148
245 8054478060 8054472261 Bacteria 7464355
246 Ga0466966_0007722
247 Ga0070658_10175131
248 Ga0070676_10064803
249 Ga0070683_100111357
250 Ga0070683_100131229
251 Ga0068869_100191686
252 Ga0070680_100012967
253 Ga0070682_100091862
254 Ga0068868_100129707
255 Ga0070691_10022252
256 Ga0070668_100197165
257 Ga0070671_100002132
258 Ga0070709_10266828
259 Ga0070714_100038214
260 Ga0070714_100183983
261 Ga0070713_100220649
262 Ga0070713_100227642
263 Ga0070710_10009483
264 Ga0070710_10018592
265 Ga0070663_100015350
266 Ga0070681_10011399
267 Ga0070681_10123553
268 Ga0070685_10077477
269 Ga0070679_100120765
270 Ga0070679_100333180
271 Ga0070684_100067971
272 Ga0070684_100404151
273 Ga0070693_100037966
274 Ga0070665_100011229
275 Ga0070665_100252283
276 Ga0068854_100256437
277 Ga0068856_100277559
278 Ga0070702_100000113
279 Ga0070702_100097055
280 Ga0068852_100200462
281 Ga0068866_10059873
282 Ga0068851_10081309
283 Ga0068870_10066421
284 Ga0068870_10105395
285 Ga0068863_100387514
286 Ga0068860_100004869
287 Ga0070717_10344244
288 Ga0070717_10431103
289 Ga0075364_10092895
290 Ga0070712_100146634
291 Ga0075430_100049113
292 Ga0111539_10264655
293 Ga0105245_10584025
294 Ga0105243_10022213
295 Ga0105241_10236807
296 Ga0105249_10083541
297 Ga0105239_10309275
298 Ga0105246_10077450
299 Ga0157371_10135155
300 Ga0157370_10151987
301 Ga0157369_10512582
302 Ga0157375_10264778
303 Ga0163163_10175730
304 Ga0163163_10522320
305 Ga0157380_10253793
306 Ga0157380_10349044
307 Ga0182008_10121787
308 Ga0157377_10199799
309 Ga0157379_10056568
310 Ga0163161_10132782
311 Ga0213873_10000189
312 Ga0213876_10014223
313 Ga0213876_10112992
314 Ga0213875_10001025
315 Ga0213875_10002646
316 Ga0213875_10010697
317 Ga0213875_10018950
318 Ga0207692_10179873
319 Ga0207699_10241168
320 Ga0207643_10037672
321 Ga0207707_10012910
322 Ga0207663_10075007
323 Ga0207663_10202182
324 Ga0207660_10045809
325 Ga0207652_10012626
326 Ga0207700_10383300
327 Ga0207664_10027881
328 Ga0207664_10273435
329 Ga0207664_10409982
330 Ga0207644_10013550
331 Ga0207686_10125842
332 Ga0207689_10144138
333 Ga0207689_10187550
334 Ga0207661_10055003
335 Ga0207677_10138793
336 Ga0207703_10158491
337 Ga0207678_10000057
338 Ga0207678_10244256
339 Ga0207702_10168997
340 Ga0207641_10093160
341 Ga0207674_10019865
342 Ga0207674_10102839
343 Ga0207674_10417094
344 Ga0207683_10253971
345 Ga0207683_10292847
346 Ga0268266_10026791
347 Ga0268266_10117181
348 Ga0268266_10270632
349 Ga0268264_10002441
350 Ga0307513_10006534
351 Ga0307514_10048995
352 Ga0307413_10253430
353 Ga0307406_10147870
354 Ga0307414_10124817
355 Ga0373931_0139689
356 Ga0436364_0085858
357 Ga0436364_0466238
358 Ga0436364_0499509
359 Ga0436364_1188778
360 Ga0436364_1375330
361 Ga0436365_0907214
362 Ga0436365_1572675
363 Ga0436365_1826047
364 Ga0436363_0172157
365 Ga0436362_1080049
366 Ga0439461_0002757
367 Ga0439466_0001892
368 Ga0439465_0012492
369 Ga0439431_0013640
370 Ga0439445_0015412
371 Ga0450903_001262
372 Ga0439458_0000512
373 Ga0439434_0014829
374 Ga0466972_0017653
375 Ga0466972_0024056
376 Ga0466965_0002229
377 Ga0466965_0003108
378 Ga0466965_0006832
379 Ga0466961_0002777
380 Ga0466963_0003278
381 Ga0466963_0008778
382 Ga0466963_0021341
383 Ga0466963_0048154
384 Ga0466963_0219260
385 Ga0466971_0013338
386 Ga0466971_0030004
387 Ga0466968_0000605
388 Ga0466968_0020904
389 Ga0466968_0107758
390 Ga0466970_0000911
391 Ga0466957_0002860
392 Ga0466957_0031073
393 Ga0466957_0034904
394 Ga0466957_0128720
395 Ga0466960_0000186
396 Ga0466960_0000694
397 Ga0466960_0019119
398 Ga0466960_0085495
399 Ga0466960_0085561
400 Ga0466959_0004926
401 Ga0466959_0025592
402 Ga0466959_0131577
403 Ga0466958_0013979
404 Ga0466958_0028834
405 Ga0466958_0140359
406 Ga0466967_0000587
407 Ga0466967_0007817
408 Ga0466967_0014364
409 Ga0466967_0090100
410 Ga0466967_0478059
411 Ga0495607_0012498
412 Ga0495606_0054370
413 Ga0495683_0001715
414 Ga0496100_0001117
415 Ga0496101_0032238
416 Ga0496102_0000018
417 Ga0496102_0306349
418 Ga0496103_0000115
419 Ga0496104_0111694
420 Ga0496107_0101506
421 Ga0496108_0297300
422 Ga0496108_0465197
423 Ga0496109_0033214
424 Ga0496110_0168428
425 Ga0496110_0342326
426 Ga0496111_0188955
427 Ga0496113_0376367
428 Ga0496116_0000235
429 Ga0496117_0000236
430 Ga0496118_0000100
431 Ga0496119_0001940
432 Ga0496121_0006017
433 Ga0496124_0047917
434 Ga0496126_0000022
435 Ga0496126_0000327
436 Ga0496126_0040813
437 Ga0501032_0028471
438 Ga0501032_0132581
439 Ga0501033_0013254
440 Ga0501034_0002090
441 Ga0501034_0107609
442 Ga0501036_0028258
443 Ga0501036_0068590
444 Ga0501037_0006342
445 Ga0501046_0001749
446 Ga0501047_0010722
447 Ga0501047_0062259
448 Ga0501047_0144994
449 Ga0501048_0014622
450 Ga0501069_0032479
451 Ga0501070_0002247
452 Ga0501081_0150831
453 Ga0501035_0002077
454 Ga0501035_0009822
455 Ga0501044_0000376
456 Ga0501044_0018247
457 Ga0501044_0400135
458 nmdc:mga03n38_15110_c1
459 nmdc:mga00v17_2271_c1
460 nmdc:mga07m45_109635_c1
461 nmdc:mga07m45_171363_c1
462 nmdc:mga08y16_572327_c1
463 nmdc:mga0sz30_129786_c1
464 Ga0500627_0013010
465 Ga0466962_0002281
466 Ga0466962_0024924
467 Ga0466962_0092356
468 2548694608
469 2552107106
470 2644511615
471 2644637069
472 2738703755
473 2738707466
474 2739330644
475 2739333962
476 2753076914
477 2786666967
478 2791911440
479 2816504227
480 2863073975
481 2866615130
482 2899371113
483 2902814781
484 2915361691
485 2954682052
486 2954690873
487 2990092450
488 8003317631
489 8047718956
490 8054478060

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00494

SQS_PSY

Squalene/phytoene synthase

26

295

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
5iys-assembly1.cif.gz_A crystal structure of a dehydrosqualene synthase in complex with ligand 0.9019 13 306
3ae0-assembly2.cif.gz_B crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with geranylgeranyl thiopyrophosphate 0.9006 13 302
4hd1-assembly1.cif.gz_A crystal structure of squalene synthase hpnc from alicyclobacillus acidocaldarius 0.8982 8 278
3adz-assembly1.cif.gz_A crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with intermediate pspp 0.8977 13 302
2zy1-assembly1.cif.gz_A crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with bisphosphonate bph-830 0.8962 13 302
ID Description Score Start End Superfamily
af_Q330K2_57_309_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9073 20 280 1.10.600.10
af_P9WHP3_1_280_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9044 13 300 1.10.600.10
4hd1A00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9007 10 278 1.10.600.10
af_P9WHP3_1_280_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8982 13 300 1.10.600.10
af_Q330K2_57_309_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8972 20 280 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A2N5XDJ8-F1-model_v4 Phytoene synthase 0.9841 84 300 GO:0016117
GO:0051996
AF-A0A6F8YZ02-F1-model_v4 Uncharacterized protein 0.9794 104 300 GO:0008299
GO:0016765
AF-A0A849C096-F1-model_v4 Phytoene/squalene synthase family protein 0.9738 100 303 GO:0016117
GO:0051996
AF-A0A2N5XDJ8-F1-model_v4 Phytoene synthase 0.9708 84 300 GO:0016117
GO:0051996
AF-A0A6J6ZRX0-F1-model_v4 Unannotated protein 0.9704 41 307 GO:0004311
GO:0008299
GO:0051996

Map