F357429

General Info

Members Datasets Scaffolds Average Seq Length
245 162 207 1030

Family's Representative Sequence

Representative Sequence 3300025924|Ga0207694_10013720|Ga0207694_100137203
Length 1054
Sequence MNDTGGRFGPQPSQPPHHQRSFAISAWAIKNPIPVAVLFIGLILAGLISYMGLPIKQYPNIQFPMIAVTVTQNGAAPGEIETQITRPVEDALAGVTGVKTVQSTVTQGVSTTSMQFEIGENLQKKVDEVRSKVAQARAILPRDIDEPIVQQIEVDEAAPILTYAVTAPGMSDDELSWFIDDTISRTLQGAKGVAQITRVGGVSREINVVVDPDRLAARGLTATQVNNALRGFQTDAPGGRVNVGGREQTLRIYSNTTSVEALRNLNIPIGAGRYVKLADVADIGDGASEVRGFARLNGHPVVGFQVSKTKEASDVVTEDAVAKAVAGLEKTHPGVKFTKIFSSVTNTRETFKATQHVLGEGMLLAALVVFFFLRDWRATAMTAVAMPISLIPTFFVMKLIGFSLNMISLLALTLVVGILVDDAIVEIENIEKRVERGQRPYQAALEGADAIGLAVVATTMAIVVVFTPVSFMPGIPGQFFREFGLTVSVAVLFSLLTARLVTPLMAAYFLKPKAHARERKPFTGRYRRVLEWALRHRIVAAILGTVLFFGSLGLLFFLPQGFQPASDPDFMYVDIQGPPGASVADMEDTARRINDLFKGQPEVTNVFIQIGSTVSSFGPGMTGAGGSDLRSGTATLLLDPHRHATGDQIKARLRDGLRAIPDARLSFLDFQGASGFQQILTGDNPQNLQFAAHELEKEMRTLPQLADPHPSKPPEAPEIVIRPKPQEAARLGVSSDTLATIVRVATVGDIDANVAKFNEGERRIPIRVRLPQYARADIGRIRSLRVPTAAGGSTTLDSVADIYFQAGPARIDRLNRERQMTVRAELNGVEMGQAQRAVNNLPIMKHLPAGVRPAAIGNQQAMQEMFGGFLVAIFAGVSMIFGVQVLLFRSFFKPAVILLALPLAVGGAFVGLLAFNLSLSIPSLIGFLMLLGLAAKNSILLVEYAIEREREGYSQHEAIIEACRERSRPIIMTTVAMAAGMLPTALAIEKGSEFRQPMAVAVIGGLITSTMLSLVLIPVFYRFVDDFEQWLTPRLARLITPREAVLEPAPEDRF

Samples

Sample ID Description Type Environment
1 2510917020 Caulobacter sp. AP07 Isolate Rhizosphere
2 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
3 2582581279 Caulobacter henricii OK261 Isolate Rhizosphere
4 2582581280 Caulobacter henricii CF287 Isolate Rhizosphere
5 2582581293 Caulobacter henricii YR570 Isolate Rhizosphere
6 2585428106 Caulobacter sp. OV484 Isolate Rhizosphere
7 2643221545 Caulobacter sp. Root1455 Isolate Unclassified
8 2643221552 Caulobacter sp. Root1472 Isolate Unclassified
9 2643221583 Caulobacter sp. Root655 Isolate Unclassified
10 2643221584 Caulobacter sp. Root656 Isolate Unclassified
11 2643221598 Phenylobacterium sp. Root700 Isolate Unclassified
12 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
13 2643221640 Caulobacter sp. Root342 Isolate Unclassified
14 2643221642 Caulobacter sp. Root343 Isolate Unclassified
15 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
16 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
17 2643221691 Caulobacter sp. Root487D2Y Isolate Unclassified
18 2791355048 Caulobacter flavus CGMCC1 15093 Isolate Rhizosphere
19 2818991435 Caulobacter henricii 536 Isolate Unclassified
20 2818991454 Caulobacter rhizosphaerae 3260 Isolate Rhizosphere
21 2843744320 Caulobacter flavus RHGG3 Isolate Unclassified
22 2849560528 Caulobacter zeae 410 Isolate Unclassified
23 2849573788 Caulobacter endophyticus 774 Isolate Unclassified
24 2851153111 Caulobacter radicis 736 Isolate Unclassified
25 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
26 2884960567 Caulobacter sp. 602-1 Isolate Rhizosphere
27 2898329390 Caulobacter sp. 602-2 Isolate Rhizosphere
28 2928531327 Caulobacter sp. 1776 Isolate Rhizosphere
29 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
30 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
31 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
32 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
33 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
34 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
35 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
36 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
37 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
38 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
39 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
40 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
41 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
42 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
43 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
44 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
45 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
46 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
47 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
48 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
49 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
50 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
51 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
52 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
53 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
54 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
55 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
56 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
57 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
58 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
59 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
60 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
64 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
66 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
89 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
90 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
91 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
92 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
93 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
94 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
95 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
96 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
97 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
98 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
99 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
100 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
101 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
102 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
103 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
104 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
105 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
106 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
107 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
108 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
109 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
110 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
111 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
112 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
113 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
114 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
115 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
116 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
117 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
118 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
119 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
120 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
121 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
122 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
123 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
124 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
125 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
126 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
127 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
128 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
129 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
130 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
131 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
132 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
133 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
134 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
135 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
136 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
137 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
140 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
141 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
142 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
143 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
144 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
145 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
146 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
147 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
148 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
149 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
150 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
151 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
152 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
153 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
154 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
155 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
156 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
157 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
158 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
159 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
160 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
161 3300053731 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere Metagenome Endosphere
162 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 84.49
Metatranscriptomes 0
Isolates 15.51

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.63
Nodule 0
Rhizoplane 2.45
Rhizosphere 61.22
Stem 0
Stem Tuber 0
Unclassified 14.69

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055536_1000288 3300003781 Bacteria 38152
2 Ga0055531_10000551 3300003794 Bacteria 33094
3 Ga0065165_1001209 3300005262 Bacteria 29779
4 Ga0065165_1001412 3300005262 Bacteria 26121
5 Ga0070658_10003402 3300005327 Bacteria 13083
6 Ga0070670_100000007 3300005331 Bacteria 318672
7 Ga0070670_100005007 3300005331 Bacteria 11147
8 Ga0070680_100002137 3300005336 Bacteria 14611
9 Ga0070668_100000293 3300005347 Bacteria 32901
10 Ga0070668_100000622 3300005347 Bacteria 23828
11 Ga0070668_100001654 3300005347 Bacteria 16174
12 Ga0070669_100004581 3300005353 Bacteria 9981
13 Ga0070659_100006611 3300005366 Bacteria 8376
14 Ga0070667_100000155 3300005367 Bacteria 85527
15 Ga0070667_100004833 3300005367 Bacteria 11289
16 Ga0070667_100035958 3300005367 Bacteria 4150
17 Ga0070681_10005369 3300005458 Bacteria 12372
18 Ga0070665_100000517 3300005548 Bacteria 54900
19 Ga0070665_100000837 3300005548 Bacteria 40130
20 Ga0070665_100004067 3300005548 Bacteria 15391
21 Ga0070665_100005544 3300005548 Bacteria 12979
22 Ga0070665_100040643 3300005548 Bacteria 4674
23 Ga0070665_100060472 3300005548 Bacteria 3797
24 Ga0068855_100015052 3300005563 Bacteria 9314
25 Ga0068859_100000230 3300005617 Bacteria 55064
26 Ga0068864_100000067 3300005618 Bacteria 115834
27 Ga0068864_100000128 3300005618 Bacteria 73813
28 Ga0068863_100000237 3300005841 Bacteria 58657
29 Ga0068863_100000360 3300005841 Bacteria 46300
30 Ga0068858_100000020 3300005842 Bacteria 175896
31 Ga0068858_100002621 3300005842 Bacteria 18119
32 Ga0068860_100000047 3300005843 Bacteria 213287
33 Ga0068860_100000531 3300005843 Bacteria 46615
34 Ga0068860_100021121 3300005843 Bacteria 6304
35 Ga0068862_100007038 3300005844 Bacteria 9340
36 Ga0068862_100011934 3300005844 Bacteria 7178
37 Ga0068862_100012144 3300005844 Bacteria 7119
38 Ga0075368_10001002 3300006042 Bacteria 8831
39 Ga0075367_10011700 3300006178 Bacteria 4656
40 Ga0068865_100003736 3300006881 Bacteria 9144
41 Ga0097620_100000230 3300006931 Bacteria 55064
42 Ga0105240_10000970 3300009093 Bacteria 51122
43 Ga0105248_10000517 3300009177 Bacteria 43853
44 Ga0105248_10007113 3300009177 Bacteria 12260
45 Ga0105248_10014640 3300009177 Bacteria 8630
46 Ga0105248_10021758 3300009177 Bacteria 7105
47 Ga0105238_10016976 3300009551 Bacteria 7388
48 Ga0105249_10003041 3300009553 Bacteria 14470
49 Ga0163163_10004712 3300014325 Bacteria 11685
50 Ga0157379_10005276 3300014968 Bacteria 11096
51 Ga0209026_1001805 3300025250 Bacteria 8823
52 Ga0209565_1000794 3300025263 Bacteria 18213
53 Ga0209673_1002253 3300025273 Bacteria 13894
54 Ga0209676_1000177 3300025292 Bacteria 151589
55 Ga0209676_1000247 3300025292 Bacteria 115814
56 Ga0209564_1001677 3300025295 Bacteria 21114
57 Ga0209758_1000246 3300025297 Bacteria 111041
58 Ga0209050_1000057 3300025298 Bacteria 326289
59 Ga0209050_1001701 3300025298 Bacteria 21997
60 Ga0209256_1006960 3300025299 Bacteria 5761
61 Ga0209051_1001237 3300025303 Bacteria 22915
62 Ga0209051_1012818 3300025303 Bacteria 4032
63 Ga0209257_1000159 3300025304 Bacteria 178767
64 Ga0209257_1000914 3300025304 Bacteria 41061
65 Ga0207705_10001024 3300025909 Bacteria 22688
66 Ga0207695_10000572 3300025913 Bacteria 75360
67 Ga0207695_10003712 3300025913 Bacteria 21257
68 Ga0207660_10021463 3300025917 Bacteria 4342
69 Ga0207657_10000381 3300025919 Bacteria 46762
70 Ga0207652_10003802 3300025921 Bacteria 12375
71 Ga0207694_10013720 3300025924 Bacteria 6106
72 Ga0207650_10000030 3300025925 Bacteria 235824
73 Ga0207690_10001039 3300025932 Bacteria 17769
74 Ga0207704_10003198 3300025938 Bacteria 7414
75 Ga0207711_10001000 3300025941 Bacteria 27099
76 Ga0207711_10005088 3300025941 Bacteria 11145
77 Ga0207667_10004668 3300025949 Bacteria 16782
78 Ga0207667_10030357 3300025949 Bacteria 5848
79 Ga0207712_10001702 3300025961 Bacteria 14771
80 Ga0207668_10000010 3300025972 Bacteria 185249
81 Ga0207668_10000108 3300025972 Bacteria 59119
82 Ga0207658_10000265 3300025986 Bacteria 55108
83 Ga0207703_10000082 3300026035 Bacteria 110579
84 Ga0207641_10000007 3300026088 Bacteria 441443
85 Ga0207641_10009320 3300026088 Bacteria 8099
86 Ga0207676_10000183 3300026095 Bacteria 55220
87 Ga0207676_10000241 3300026095 Bacteria 47707
88 Ga0268266_10000003 3300028379 Bacteria 1701703
89 Ga0268266_10001015 3300028379 Bacteria 35377
90 Ga0268266_10002012 3300028379 Bacteria 22687
91 Ga0268266_10028991 3300028379 Bacteria 4704
92 Ga0268266_10050835 3300028379 Bacteria 3557
93 Ga0268265_10005898 3300028380 Bacteria 8347
94 Ga0268264_10000008 3300028381 Bacteria 773387
95 Ga0268264_10000125 3300028381 Bacteria 186416
96 Ga0268264_10024887 3300028381 Bacteria 4891
97 Ga0307515_10014431 3300028794 Bacteria 14647
98 Ga0307515_10048773 3300028794 Bacteria 6394
99 Ga0265338_10025810 3300028800 Bacteria 5947
100 Ga0265327_10000280 3300031251 Bacteria 100757
101 Ga0307513_10000077 3300031456 Bacteria 134167
102 Ga0307513_10005907 3300031456 Bacteria 16067
103 Ga0265313_10003190 3300031595 Bacteria 13509
104 Ga0307516_10000001 3300031730 Bacteria 510338
105 Ga0307414_10000203 3300032004 Bacteria 39859
106 Ga0373927_0003319 3300035695 Bacteria 11573
107 Ga0373925_0000003 3300037068 Bacteria 362401
108 Ga0395899_0000347 3300037312 Bacteria 57058
109 Ga0395900_0000008 3300037418 Bacteria 480459
110 Ga0395900_0023432 3300037418 Bacteria 6319
111 Ga0395900_0039394 3300037418 Bacteria 4869
112 Ga0395898_0038880 3300037466 Bacteria 4712
113 Ga0395905_0001727 3300037471 Bacteria 25583
114 Ga0395905_0002513 3300037471 Bacteria 20268
115 Ga0395901_0000008 3300038443 Bacteria 495962
116 Ga0395901_0036288 3300038443 Bacteria 5094
117 Ga0453684_0016611 3300044712 Bacteria 11486
118 Ga0495627_000656 3300046453 Bacteria 26634
119 Ga0495590_0001017 3300046457 Bacteria 12347
120 Ga0495638_0000265 3300046460 Bacteria 70712
121 Ga0495638_0001059 3300046460 Bacteria 26935
122 Ga0495638_0002993 3300046460 Bacteria 13491
123 Ga0495638_0003567 3300046460 Bacteria 12186
124 Ga0495638_0006381 3300046460 Bacteria 8588
125 Ga0495638_0018436 3300046460 Bacteria 4635
126 Ga0495650_0000068 3300046471 Bacteria 266671
127 Ga0495583_0000002 3300046506 Bacteria 782521
128 Ga0495610_0002359 3300046512 Bacteria 15958
129 Ga0495616_0000039 3300046513 Bacteria 123105
130 Ga0495616_0000782 3300046513 Bacteria 23235
131 Ga0495631_0004403 3300046518 Bacteria 7504
132 Ga0495631_0007979 3300046518 Bacteria 5354
133 Ga0495632_0000766 3300046519 Bacteria 28794
134 Ga0495632_0006424 3300046519 Bacteria 7560
135 Ga0495637_0009885 3300046520 Bacteria 4640
136 Ga0495648_0001203 3300046524 Bacteria 25919
137 Ga0495654_0000051 3300046530 Bacteria 145932
138 Ga0495597_0015939 3300046542 Bacteria 3554
139 Ga0495622_0000720 3300046557 Bacteria 18691
140 Ga0495633_0002324 3300046558 Bacteria 13533
141 Ga0495668_0000026 3300046616 Bacteria 297287
142 Ga0495668_0005284 3300046616 Bacteria 8830
143 Ga0495625_0000198 3300046660 Bacteria 95530
144 Ga0495625_0001318 3300046660 Bacteria 30872
145 Ga0495625_0024132 3300046660 Bacteria 4634
146 Ga0495669_0000002 3300046684 Bacteria 282777
147 Ga0495613_0002180 3300046689 Bacteria 14822
148 Ga0495589_0003296 3300046794 Bacteria 8761
149 Ga0495672_0008681 3300047320 Bacteria 7459
150 Ga0495679_005798 3300047446 Bacteria 5435
151 Ga0495673_0000204 3300047469 Bacteria 89887
152 Ga0495673_0000225 3300047469 Bacteria 83589
153 Ga0495673_0000287 3300047469 Bacteria 67754
154 Ga0495673_0002746 3300047469 Bacteria 12052
155 Ga0495673_0007304 3300047469 Bacteria 6373
156 Ga0495686_0000805 3300047472 Bacteria 40626
157 Ga0495686_0008732 3300047472 Bacteria 7393
158 Ga0496102_0036699 3300048905 Bacteria 4417
159 Ga0496106_0004033 3300048909 Bacteria 10970
160 Ga0496107_0000038 3300048910 Bacteria 78077
161 Ga0496115_0000126 3300048918 Bacteria 69044
162 Ga0496115_0002920 3300048918 Bacteria 12337
163 Ga0496115_0041645 3300048918 Bacteria 3656
164 Ga0496118_0004235 3300048921 Bacteria 17215
165 Ga0496121_0000035 3300048924 Bacteria 374316
166 Ga0496121_0013543 3300048924 Bacteria 8747
167 Ga0496122_0003952 3300048925 Bacteria 18941
168 Ga0496123_0005109 3300048926 Bacteria 13396
169 Ga0496125_0007293 3300048928 Bacteria 11774
170 Ga0495678_003384 3300049459 Bacteria 9924
171 Ga0501034_0004630 3300049571 Bacteria 15240
172 Ga0501047_0005059 3300049581 Bacteria 12376
173 Ga0501044_0045803 3300049823 Bacteria 4530
174 nmdc:mga00v17_254_c1 3300050491 Bacteria 31422
175 nmdc:mga06z11_8727_c1 3300050494 Bacteria 4245
176 Ga0500578_0001673 3300053086 Bacteria 21300
177 Ga0500643_000508 3300053087 Bacteria 27781
178 Ga0500643_001156 3300053087 Bacteria 15725
179 Ga0500643_007092 3300053087 Bacteria 4587
180 Ga0500644_0000082 3300053088 Bacteria 58141
181 Ga0500644_0002447 3300053088 Bacteria 4640
182 Ga0500647_0009008 3300053091 Bacteria 4359
183 Ga0500651_0013616 3300053093 Bacteria 4961
184 Ga0500641_0000463 3300053096 Bacteria 14796
185 Ga0500641_0000763 3300053096 Bacteria 11684
186 Ga0500562_001545 3300053108 Bacteria 5697
187 Ga0500562_002754 3300053108 Bacteria 4372
188 Ga0500572_000275 3300053111 Bacteria 18663
189 Ga0500594_0000315 3300053118 Bacteria 10818
190 Ga0500595_004694 3300053119 Bacteria 6071
191 Ga0500608_000072 3300053122 Bacteria 43162
192 Ga0500608_000981 3300053122 Bacteria 10243
193 Ga0500618_000734 3300053125 Bacteria 18733
194 Ga0500658_0000758 3300053134 Bacteria 13308
195 Ga0500559_0000279 3300053136 Bacteria 39412
196 Ga0500559_0000304 3300053136 Bacteria 37380
197 Ga0500564_000075 3300053138 Bacteria 25716
198 Ga0500577_0001493 3300053142 Bacteria 5966
199 Ga0500590_009733 3300053148 Bacteria 4840
200 Ga0500622_0000167 3300053156 Bacteria 70349
201 Ga0500622_0000172 3300053156 Bacteria 69427
202 Ga0500622_0001556 3300053156 Bacteria 18128
203 Ga0500645_000909 3300053730 Bacteria 17047
204 Ga0500645_004104 3300053730 Bacteria 5693
205 Ga0500609_000224 3300053731 Bacteria 8132
206 Ga0500609_000454 3300053731 Bacteria 6091
207 Ga0500596_002679 3300053735 Bacteria 3493

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300047469 Ga0495673_0007304 Ga0495673_0007304_26_2683 872
2 3300053142 Ga0500577_0001493 Ga0500577_0001493_1210_4269 963
3 3300031595 Ga0265313_10003190 Ga0265313_100031907 964
4 3300009177 Ga0105248_10021758 Ga0105248_100217585 975
5 3300046460 Ga0495638_0018436 Ga0495638_0018436_464_3568 977
6 3300046660 Ga0495625_0024132 Ga0495625_0024132_1044_4148 977
7 3300037418 Ga0395900_0039394 Ga0395900_0039394_361_3522 978
8 3300037466 Ga0395898_0038880 Ga0395898_0038880_344_3505 978
9 3300053156 Ga0500622_0000167 Ga0500622_0000167_63099_66206 978
10 3300005548 Ga0070665_100060472 Ga0070665_1000604722 980
11 3300028379 Ga0268266_10050835 Ga0268266_100508351 980
12 3300005548 Ga0070665_100040643 Ga0070665_1000406432 981
13 3300028379 Ga0268266_10028991 Ga0268266_100289912 981
14 3300028794 Ga0307515_10014431 Ga0307515_100144317 981
15 3300047469 Ga0495673_0000204 Ga0495673_0000204_53797_56856 981
16 3300047469 Ga0495673_0000225 Ga0495673_0000225_45005_48127 986
17 3300046518 Ga0495631_0007979 Ga0495631_0007979_1184_4243 988
18 3300046520 Ga0495637_0009885 Ga0495637_0009885_116_3175 988
19 3300047472 Ga0495686_0000805 Ga0495686_0000805_22140_25199 988
20 3300053088 Ga0500644_0002447 Ga0500644_0002447_475_3534 988
21 3300053108 Ga0500562_001545 Ga0500562_001545_2207_5266 988
22 3300053156 Ga0500622_0000172 Ga0500622_0000172_15390_18449 988
23 3300032004 Ga0307414_10000203 Ga0307414_1000020323 990
24 3300037471 Ga0395905_0001727 Ga0395905_0001727_17441_20602 991
25 3300053096 Ga0500641_0000463 Ga0500641_0000463_2457_5600 991
26 3300049571 Ga0501034_0004630 Ga0501034_0004630_1304_4465 992
27 3300005353 Ga0070669_100004581 Ga0070669_1000045817 995
28 3300044712 Ga0453684_0016611 Ga0453684_0016611_8154_11273 997
29 3300005347 Ga0070668_100001654 Ga0070668_1000016547 1000
30 3300005617 Ga0068859_100000230 Ga0068859_10000023028 1000
31 3300005844 Ga0068862_100011934 Ga0068862_1000119342 1000
32 3300006931 Ga0097620_100000230 Ga0097620_10000023028 1000
33 3300009177 Ga0105248_10007113 Ga0105248_100071139 1000
34 3300014968 Ga0157379_10005276 Ga0157379_100052762 1000
35 3300025941 Ga0207711_10005088 Ga0207711_1000508810 1000
36 3300028381 Ga0268264_10024887 Ga0268264_100248872 1000
37 3300053087 Ga0500643_001156 Ga0500643_001156_8598_11726 1000
38 3300037418 Ga0395900_0023432 Ga0395900_0023432_1562_4654 1004
39 3300038443 Ga0395901_0036288 Ga0395901_0036288_1739_4831 1004
40 3300046689 Ga0495613_0002180 Ga0495613_0002180_4140_7235 1004
41 3300053091 Ga0500647_0009008 Ga0500647_0009008_1168_4260 1004
42 3300035695 Ga0373927_0003319 Ga0373927_0003319_6093_9215 1005
43 3300037068 Ga0373925_0000003 Ga0373925_0000003_58254_61376 1005
44 3300053111 Ga0500572_000275 Ga0500572_000275_4120_7212 1005
45 3300053148 Ga0500590_009733 Ga0500590_009733_326_3418 1005
46 3300031456 Ga0307513_10005907 Ga0307513_1000590711 1009
47 3300005548 Ga0070665_100005544 Ga0070665_1000055446 1012
48 3300049823 Ga0501044_0045803 Ga0501044_0045803_800_3919 1012
49 3300009177 Ga0105248_10014640 Ga0105248_100146406 1013
50 3300031251 Ga0265327_10000280 Ga0265327_1000028051 1013
51 3300046542 Ga0495597_0015939 Ga0495597_0015939_231_3371 1013
52 3300046557 Ga0495622_0000720 Ga0495622_0000720_523_3663 1013
53 3300046558 Ga0495633_0002324 Ga0495633_0002324_5332_8403 1013
54 3300048905 Ga0496102_0036699 Ga0496102_0036699_307_3447 1013
55 3300048921 Ga0496118_0004235 Ga0496118_0004235_2072_5212 1013
56 3300048924 Ga0496121_0000035 Ga0496121_0000035_62129_65269 1013
57 3300053087 Ga0500643_007092 Ga0500643_007092_421_3546 1013
58 3300053093 Ga0500651_0013616 Ga0500651_0013616_1200_4340 1013
59 3300053119 Ga0500595_004694 Ga0500595_004694_953_4093 1013
60 3300053122 Ga0500608_000981 Ga0500608_000981_60_3200 1013
61 3300053735 Ga0500596_002679 Ga0500596_002679_189_3329 1013
62 3300005843 Ga0068860_100000531 Ga0068860_10000053138 1014
63 3300028381 Ga0268264_10000008 Ga0268264_10000008333 1014
64 iso_pu_bacteria 2524023250 2524609772 1015
65 3300025297 Ga0209758_1000246 Ga0209758_100024632 1016
66 3300031456 Ga0307513_10000077 Ga0307513_1000007764 1016
67 iso_pu_bacteria 2818991435 2819536297 1018
68 3300048918 Ga0496115_0000126 Ga0496115_0000126_30360_33491 1019
69 3300048925 Ga0496122_0003952 Ga0496122_0003952_8769_11846 1019
70 3300048926 Ga0496123_0005109 Ga0496123_0005109_5240_8317 1019
71 3300053136 Ga0500559_0000304 Ga0500559_0000304_2037_5144 1019
72 3300046453 Ga0495627_000656 Ga0495627_000656_652_3759 1020
73 3300046794 Ga0495589_0003296 Ga0495589_0003296_5014_8121 1020
74 3300047469 Ga0495673_0000287 Ga0495673_0000287_62539_65646 1020
75 3300006042 Ga0075368_10001002 Ga0075368_100010022 1021
76 3300006178 Ga0075367_10011700 Ga0075367_100117002 1021
77 3300028800 Ga0265338_10025810 Ga0265338_100258102 1021
78 3300046460 Ga0495638_0000265 Ga0495638_0000265_8561_11689 1021
79 3300046513 Ga0495616_0000039 Ga0495616_0000039_8646_11774 1021
80 3300046519 Ga0495632_0000766 Ga0495632_0000766_8142_11312 1021
81 3300050491 nmdc:mga00v17_254_c1 nmdc:mga00v17_254_c1_21917_25030 1021
82 3300050494 nmdc:mga06z11_8727_c1 nmdc:mga06z11_8727_c1_910_4023 1021
83 3300053731 Ga0500609_000224 Ga0500609_000224_629_3757 1021
84 3300005347 Ga0070668_100000293 Ga0070668_10000029321 1022
85 3300046506 Ga0495583_0000002 Ga0495583_0000002_777324_780434 1022
86 3300047446 Ga0495679_005798 Ga0495679_005798_2313_5423 1022
87 3300053125 Ga0500618_000734 Ga0500618_000734_1043_4153 1022
88 3300053136 Ga0500559_0000279 Ga0500559_0000279_9345_12437 1022
89 3300005842 Ga0068858_100002621 Ga0068858_10000262117 1023
90 3300014325 Ga0163163_10004712 Ga0163163_100047129 1023
91 3300025913 Ga0207695_10003712 Ga0207695_100037125 1023
92 3300025949 Ga0207667_10030357 Ga0207667_100303573 1023
93 3300005331 Ga0070670_100005007 Ga0070670_1000050076 1024
94 3300005367 Ga0070667_100035958 Ga0070667_1000359582 1024
95 3300005843 Ga0068860_100021121 Ga0068860_1000211213 1024
96 iso_pu_bacteria 2791355048 2792459057 1024
97 iso_pu_bacteria 2843744320 2843746571 1024
98 iso_pu_bacteria 2849560528 2849563682 1024
99 iso_pu_bacteria 2849573788 2849576010 1024
100 iso_pu_bacteria 2851153111 2851153389 1024
101 iso_pu_bacteria 2898329390 2898331562 1024
102 iso_pu_bacteria 2510917020 2511125429 1025
103 iso_pu_bacteria 2643221583 2643924167 1025
104 iso_pu_bacteria 2791355048 2792462067 1025
105 iso_pu_bacteria 2843744320 2843745972 1025
106 3300005618 Ga0068864_100000067 Ga0068864_10000006763 1026
107 3300005841 Ga0068863_100000237 Ga0068863_10000023751 1026
108 3300005842 Ga0068858_100000020 Ga0068858_100000020112 1026
109 3300026035 Ga0207703_10000082 Ga0207703_1000008252 1026
110 3300026088 Ga0207641_10000007 Ga0207641_1000000751 1026
111 3300026095 Ga0207676_10000241 Ga0207676_1000024117 1026
112 3300025917 Ga0207660_10021463 Ga0207660_100214632 1027
113 3300046460 Ga0495638_0001059 Ga0495638_0001059_2919_6035 1027
114 3300009093 Ga0105240_10000970 Ga0105240_1000097029 1028
115 3300025913 Ga0207695_10000572 Ga0207695_1000057251 1028
116 3300028794 Ga0307515_10048773 Ga0307515_100487734 1029
117 3300031730 Ga0307516_10000001 Ga0307516_10000001483 1029
118 3300046513 Ga0495616_0000782 Ga0495616_0000782_18709_21846 1029
119 3300046660 Ga0495625_0000198 Ga0495625_0000198_947_4057 1029
120 3300053087 Ga0500643_000508 Ga0500643_000508_1073_4174 1029
121 3300053096 Ga0500641_0000763 Ga0500641_0000763_1009_4110 1029
122 3300053108 Ga0500562_002754 Ga0500562_002754_992_4093 1029
123 3300053730 Ga0500645_000909 Ga0500645_000909_1047_4148 1029
124 3300053731 Ga0500609_000454 Ga0500609_000454_1655_4792 1029
125 iso_pu_bacteria 2643221545 2643748411 1029
126 iso_pu_bacteria 2643221584 2643930797 1029
127 iso_pu_bacteria 2643221691 2644510084 1029
128 iso_pu_bacteria 2818991435 2819540133 1029
129 iso_pu_bacteria 2818991454 2819649171 1029
130 3300005844 Ga0068862_100012144 Ga0068862_1000121445 1030
131 3300046512 Ga0495610_0002359 Ga0495610_0002359_392_3511 1030
132 3300049459 Ga0495678_003384 Ga0495678_003384_4294_7413 1030
133 3300053086 Ga0500578_0001673 Ga0500578_0001673_1385_4504 1030
134 3300053118 Ga0500594_0000315 Ga0500594_0000315_2857_5976 1030
135 3300025263 Ga0209565_1000794 Ga0209565_10007943 1031
136 3300025273 Ga0209673_1002253 Ga0209673_10022533 1031
137 3300025299 Ga0209256_1006960 Ga0209256_10069603 1031
138 3300037312 Ga0395899_0000347 Ga0395899_0000347_8174_11320 1031
139 3300037418 Ga0395900_0000008 Ga0395900_0000008_104736_107882 1031
140 3300037471 Ga0395905_0002513 Ga0395905_0002513_14867_18013 1031
141 3300038443 Ga0395901_0000008 Ga0395901_0000008_372584_375730 1031
142 3300053088 Ga0500644_0000082 Ga0500644_0000082_51486_54605 1031
143 iso_pu_bacteria 2582581279 2585150345 1031
144 iso_pu_bacteria 2585428106 2587918295 1031
145 iso_pu_bacteria 2643221640 2644227813 1031
146 iso_pu_bacteria 2643221642 2644233926 1031
147 3300005262 Ga0065165_1001209 Ga0065165_100120922 1032
148 3300005262 Ga0065165_1001412 Ga0065165_100141211 1032
149 3300005327 Ga0070658_10003402 Ga0070658_1000340210 1032
150 3300005331 Ga0070670_100000007 Ga0070670_100000007203 1032
151 3300005336 Ga0070680_100002137 Ga0070680_1000021378 1032
152 3300005347 Ga0070668_100000622 Ga0070668_10000062218 1032
153 3300005366 Ga0070659_100006611 Ga0070659_1000066114 1032
154 3300005367 Ga0070667_100000155 Ga0070667_10000015532 1032
155 3300005367 Ga0070667_100004833 Ga0070667_1000048333 1032
156 3300005458 Ga0070681_10005369 Ga0070681_100053695 1032
157 3300005548 Ga0070665_100000517 Ga0070665_10000051712 1032
158 3300005548 Ga0070665_100004067 Ga0070665_1000040675 1032
159 3300005563 Ga0068855_100015052 Ga0068855_1000150524 1032
160 3300005618 Ga0068864_100000128 Ga0068864_1000001283 1032
161 3300005841 Ga0068863_100000360 Ga0068863_1000003605 1032
162 3300005843 Ga0068860_100000047 Ga0068860_100000047203 1032
163 3300005844 Ga0068862_100007038 Ga0068862_1000070383 1032
164 3300009553 Ga0105249_10003041 Ga0105249_100030412 1032
165 3300025250 Ga0209026_1001805 Ga0209026_10018053 1032
166 3300025295 Ga0209564_1001677 Ga0209564_100167714 1032
167 3300025909 Ga0207705_10001024 Ga0207705_1000102412 1032
168 3300025919 Ga0207657_10000381 Ga0207657_1000038139 1032
169 3300025921 Ga0207652_10003802 Ga0207652_100038027 1032
170 3300025925 Ga0207650_10000030 Ga0207650_10000030149 1032
171 3300025949 Ga0207667_10004668 Ga0207667_1000466811 1032
172 3300025961 Ga0207712_10001702 Ga0207712_100017027 1032
173 3300025972 Ga0207668_10000010 Ga0207668_1000001065 1032
174 3300025972 Ga0207668_10000108 Ga0207668_1000010832 1032
175 3300025986 Ga0207658_10000265 Ga0207658_100002654 1032
176 3300026088 Ga0207641_10009320 Ga0207641_100093202 1032
177 3300026095 Ga0207676_10000183 Ga0207676_1000018351 1032
178 3300028379 Ga0268266_10001015 Ga0268266_1000101518 1032
179 3300028379 Ga0268266_10002012 Ga0268266_1000201210 1032
180 3300028380 Ga0268265_10005898 Ga0268265_100058984 1032
181 3300028381 Ga0268264_10000125 Ga0268264_1000012552 1032
182 3300046471 Ga0495650_0000068 Ga0495650_0000068_259082_262204 1032
183 3300047472 Ga0495686_0008732 Ga0495686_0008732_2995_6117 1032
184 3300048918 Ga0496115_0041645 Ga0496115_0041645_178_3300 1032
185 3300053730 Ga0500645_004104 Ga0500645_004104_2519_5641 1032
186 iso_pu_bacteria 2582581280 2585151784 1032
187 iso_pu_bacteria 2582581293 2585194731 1032
188 iso_pu_bacteria 2643221552 2643782391 1032
189 iso_pu_bacteria 2857504554 2857505490 1032
190 iso_pu_bacteria 2884960567 2884962246 1032
191 iso_pu_bacteria 2928531327 2928533040 1032
192 3300003794 Ga0055531_10000551 Ga0055531_1000055112 1033
193 3300005548 Ga0070665_100000837 Ga0070665_10000083736 1033
194 3300025304 Ga0209257_1000159 Ga0209257_1000159138 1033
195 3300025932 Ga0207690_10001039 Ga0207690_100010399 1033
196 3300028379 Ga0268266_10000003 Ga0268266_10000003844 1033
197 3300048909 Ga0496106_0004033 Ga0496106_0004033_2495_5659 1033
198 3300048910 Ga0496107_0000038 Ga0496107_0000038_1001_4165 1033
199 3300048918 Ga0496115_0002920 Ga0496115_0002920_7163_10288 1033
200 3300048924 Ga0496121_0013543 Ga0496121_0013543_4581_7745 1033
201 3300048928 Ga0496125_0007293 Ga0496125_0007293_7054_10179 1033
202 3300049581 Ga0501047_0005059 Ga0501047_0005059_5931_9053 1033
203 iso_pu_bacteria 2585428106 2587917361 1033
204 iso_pu_bacteria 2643221614 2644087068 1033
205 iso_pu_bacteria 2643221661 2644342022 1033
206 iso_pu_bacteria 2643221666 2644368309 1033
207 3300006881 Ga0068865_100003736 Ga0068865_1000037364 1034
208 3300009177 Ga0105248_10000517 Ga0105248_100005178 1034
209 3300009551 Ga0105238_10016976 Ga0105238_100169766 1034
210 3300025292 Ga0209676_1000177 Ga0209676_1000177123 1034
211 3300025304 Ga0209257_1000914 Ga0209257_10009143 1034
212 3300025938 Ga0207704_10003198 Ga0207704_100031983 1034
213 3300025941 Ga0207711_10001000 Ga0207711_100010008 1034
214 3300046457 Ga0495590_0001017 Ga0495590_0001017_6255_9389 1034
215 3300046460 Ga0495638_0006381 Ga0495638_0006381_4006_7140 1034
216 3300046518 Ga0495631_0004403 Ga0495631_0004403_1458_4592 1034
217 3300053122 Ga0500608_000072 Ga0500608_000072_37028_40165 1034
218 3300053156 Ga0500622_0001556 Ga0500622_0001556_13529_16663 1034
219 iso_pu_bacteria 2582581280 2585155492 1034
220 iso_pu_bacteria 2582581293 2585199315 1034
221 iso_pu_bacteria 2643221552 2643778416 1034
222 iso_pu_bacteria 2643221584 2643927833 1034
223 iso_pu_bacteria 2643221598 2643998906 1034
224 iso_pu_bacteria 2643221640 2644227118 1034
225 iso_pu_bacteria 2643221642 2644233415 1034
226 3300025924 Ga0207694_10013720 Ga0207694_100137203 1035
227 3300046460 Ga0495638_0003567 Ga0495638_0003567_3015_6152 1035
228 3300046519 Ga0495632_0006424 Ga0495632_0006424_1288_4425 1035
229 3300046524 Ga0495648_0001203 Ga0495648_0001203_7353_10487 1035
230 3300046530 Ga0495654_0000051 Ga0495654_0000051_138328_141465 1035
231 3300046616 Ga0495668_0000026 Ga0495668_0000026_3172_6312 1035
232 3300046616 Ga0495668_0005284 Ga0495668_0005284_3258_6395 1035
233 3300047320 Ga0495672_0008681 Ga0495672_0008681_1793_4930 1035
234 3300047469 Ga0495673_0002746 Ga0495673_0002746_4359_7493 1035
235 3300053134 Ga0500658_0000758 Ga0500658_0000758_193_3330 1035
236 3300053138 Ga0500564_000075 Ga0500564_000075_21066_24200 1035
237 3300046684 Ga0495669_0000002 Ga0495669_0000002_272885_276004 1036
238 3300025298 Ga0209050_1001701 Ga0209050_10017014 1038
239 3300025303 Ga0209051_1001237 Ga0209051_10012374 1038
240 3300046460 Ga0495638_0002993 Ga0495638_0002993_6827_9985 1039
241 3300046660 Ga0495625_0001318 Ga0495625_0001318_9092_12250 1039
242 3300003781 Ga0055536_1000288 Ga0055536_100028834 1040
243 3300025292 Ga0209676_1000247 Ga0209676_1000247116 1040
244 3300025298 Ga0209050_1000057 Ga0209050_10000573 1040
245 3300025303 Ga0209051_1012818 Ga0209051_10128182 1040

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00873

ACR_tran

AcrB/AcrD/AcrF family

24

1025

0.96

PF03176

MMPL

MMPL family

827

1042

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
7rr7-assembly1.cif.gz_C multidrug efflux pump subunit acrb 0.9162 18 1014
4u8y-assembly1.cif.gz_C coupling of remote alternating-access transport mechanisms for protons and substrates in the multidrug efflux pump acrb 0.915 14 1013
6zo5-assembly1.cif.gz_C fusidic acid binding to the tm1/tm2 groove of acrb-g619p_g621p 0.9135 14 1013
2v50-assembly1.cif.gz_C the missing part of the bacterial mexab-oprm system: structural determination of the multidrug exporter mexb 0.9124 14 1012
7rr6-assembly1.cif.gz_C multidrug efflux pump subunit acrb 0.9083 14 1013
ID Description Score Start End Superfamily
af_Q2FVZ5_891_1052_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9791 857 1016 1.20.1640.10
af_Q2FVZ5_39_104_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9747 47 111 3.30.70.1430
af_P38054_46_113_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9666 56 120 3.30.70.1430
af_Q2FVZ5_891_1052_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9614 857 1016 1.20.1640.10
3w9iD05 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9574 863 1013 1.20.1640.10
ID Description Score Start End GO Terms
AF-A0A484ZPC0-F1-model_v4 Multidrug transporter MdtC 0.9683 353 501 GO:0005886
GO:0042910
AF-A0A2M7KMU7-F1-model_v4 Efflux RND transporter permease subunit 0.9676 867 1015 GO:0005886
GO:0042910
AF-A0A354YAT9-F1-model_v4 RND transporter 0.9584 11 936 GO:0005886
GO:0042910
AF-A0A354YAT9-F1-model_v4 RND transporter 0.9564 11 936 GO:0005886
GO:0042910
AF-A0A258C0G1-F1-model_v4 ABC transporter permease 0.9553 368 1028 GO:0005886
GO:0042910

Feature Viewer

pLDDT pTM Quality
82.12 0.76 High
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Predicted Structure (AlphaFold2)

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