F357238

General Info

Members Datasets Scaffolds Average Seq Length
245 137 245 410

Family's Representative Sequence

Representative Sequence 3300006844|Ga0075428_100003020|Ga0075428_10000302012
Length 405
Sequence MDEVRRTVEAVARDSYGRLVAYLASRLRDVAAAEDALGDAFAAALATWPRDGLPDKPEAWLLTAARNRLGAKHRHERRSEAVHAHALELLVERAERVAVGNDFPDERLRLMFTCAHPAIDVAVRTPLLLQAVLGLDAAAIARAFLVSPTAMGQRLVRAKAKIRDAAISFEVPEPHQIPERLDAVLDAIYAVYGSGWEAAAGVDPRGRGLADEAICLARMLADLLPGEPEVRGLLALVLHCEARRPARRTADGRYVPLSEQDPKLWSREMVTEAEAQLHAAARAGRSGRFQLEAAIQSVHAERASTGNTDWQAIATFYGELIRIAPALGALVGRAVAVAEVQGPAAGVELLDQIDPAAVSAYQPYWAARAHLLHRIGDARAPEAFDCAIGLAEDPAVRQFLIARRG

Samples

Sample ID Description Type Environment
1 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
2 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
3 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
14 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
32 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
33 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
34 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
35 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
36 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
38 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
39 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
40 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
41 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
42 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
43 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
46 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
47 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
48 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
49 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
51 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
52 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
53 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
54 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
55 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
56 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
57 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
58 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
59 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
60 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
61 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
62 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
63 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
64 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
65 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
66 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
93 3300028016 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 Metagenome Rhizosphere
94 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
97 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
98 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
99 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
100 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
101 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
102 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
103 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
104 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
105 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
106 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
107 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
108 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
109 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
110 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
111 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
112 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
113 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
114 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
115 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
116 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
117 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
118 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
119 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
120 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
121 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
122 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
123 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
124 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
125 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
126 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
127 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
128 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
129 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
130 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
131 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
132 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
133 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
134 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
135 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
136 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
137 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.96
Metatranscriptomes 2.04
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.63
Rhizosphere 97.96
Stem 0
Stem Tuber 0
Unclassified 0.41

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065707_10103853 3300005295 Bacteria 2723
2 Ga0070670_100021898 3300005331 Bacteria 5499
3 Ga0068869_100010648 3300005334 Bacteria 6002
4 Ga0070680_100246175 3300005336 Bacteria 1511
5 Ga0068868_100012336 3300005338 Bacteria 6244
6 Ga0070709_10028909 3300005434 Bacteria 3310
7 Ga0070709_10051505 3300005434 Bacteria 2584
8 Ga0070709_10078630 3300005434 Bacteria 2146
9 Ga0070713_100082632 3300005436 Bacteria 2743
10 Ga0070713_100101928 3300005436 Bacteria 2488
11 Ga0070713_100197427 3300005436 Unclassified 1815
12 Ga0070711_100000159 3300005439 Bacteria 36590
13 Ga0070711_100025186 3300005439 Unclassified 3889
14 Ga0070711_100062093 3300005439 Bacteria 2603
15 Ga0070694_100000183 3300005444 Bacteria 32881
16 Ga0070708_100007575 3300005445 Bacteria 8690
17 Ga0070708_100029805 3300005445 Bacteria 4709
18 Ga0070708_100069210 3300005445 Bacteria 3174
19 Ga0070708_100094659 3300005445 Bacteria 2725
20 Ga0070678_100025660 3300005456 Bacteria 3970
21 Ga0070681_10074607 3300005458 Bacteria 3353
22 Ga0068867_100007989 3300005459 Bacteria 7474
23 Ga0070706_100018766 3300005467 Bacteria 6377
24 Ga0070706_100023583 3300005467 Bacteria 5665
25 Ga0070706_100100891 3300005467 Bacteria 2682
26 Ga0070706_100107874 3300005467 Bacteria 2590
27 Ga0070706_100207221 3300005467 Bacteria 1831
28 Ga0070706_100222631 3300005467 Unclassified 1761
29 Ga0070707_100007725 3300005468 Bacteria 9991
30 Ga0070707_100164515 3300005468 Bacteria 2162
31 Ga0070707_100199480 3300005468 Unclassified 1950
32 Ga0070707_100268995 3300005468 Unclassified 1657
33 Ga0070698_100021419 3300005471 Bacteria 6770
34 Ga0070698_100105218 3300005471 Unclassified 2792
35 Ga0070698_100111986 3300005471 Bacteria 2694
36 Ga0070698_100134439 3300005471 Bacteria 2427
37 Ga0070698_100162405 3300005471 Bacteria 2177
38 Ga0070699_100009477 3300005518 Bacteria 8434
39 Ga0070699_100054887 3300005518 Plasmid 3450
40 Ga0070699_100121569 3300005518 Bacteria 2296
41 Ga0070679_100040491 3300005530 Unclassified 4635
42 Ga0070684_100053409 3300005535 Bacteria 3518
43 Ga0070697_100022872 3300005536 Bacteria 4970
44 Ga0070697_100024261 3300005536 Bacteria 4827
45 Ga0070697_100027118 3300005536 Unclassified 4581
46 Ga0068855_100010368 3300005563 Bacteria 11242
47 Ga0068855_100323908 3300005563 Bacteria 1703
48 Ga0070664_100006026 3300005564 Bacteria 9803
49 Ga0070664_100343779 3300005564 Unclassified 1356
50 Ga0068857_100003857 3300005577 Bacteria 12619
51 Ga0068854_100003390 3300005578 Bacteria 9929
52 Ga0068856_100001119 3300005614 Bacteria 28328
53 Ga0068859_100013026 3300005617 Bacteria 8355
54 Ga0068859_100178281 3300005617 Bacteria 2207
55 Ga0068866_10001505 3300005718 Bacteria 9920
56 Ga0068858_100021448 3300005842 Bacteria 6036
57 Ga0068860_100015409 3300005843 Bacteria 7468
58 Ga0068862_100103150 3300005844 Bacteria 2497
59 Ga0081455_10001890 3300005937 Bacteria 25190
60 Ga0081455_10054468 3300005937 Bacteria 3409
61 Ga0081540_1003003 3300005983 Bacteria 13526
62 Ga0070717_10002346 3300006028 Bacteria 13336
63 Ga0070717_10035487 3300006028 Bacteria 4036
64 Ga0070717_10072627 3300006028 Bacteria 2873
65 Ga0070716_100000783 3300006173 Bacteria 13641
66 Ga0070712_100006496 3300006175 Bacteria 7254
67 Ga0070712_100020399 3300006175 Bacteria 4336
68 Ga0097621_100021497 3300006237 Bacteria 4993
69 Ga0075428_100003020 3300006844 Bacteria 18367
70 Ga0075431_100057803 3300006847 Bacteria 4000
71 Ga0075431_100117431 3300006847 Bacteria 2745
72 Ga0075433_10021376 3300006852 Bacteria 5427
73 Ga0075433_10028713 3300006852 Bacteria 4732
74 Ga0075433_10053045 3300006852 Bacteria 3535
75 Ga0075433_10074063 3300006852 Bacteria 2996
76 Ga0075434_100001622 3300006871 Bacteria 19122
77 Ga0075434_100015154 3300006871 Bacteria 7384
78 Ga0075434_100016182 3300006871 Bacteria 7167
79 Ga0075434_100021194 3300006871 Bacteria 6316
80 Ga0075434_100077453 3300006871 Bacteria 3320
81 Ga0075434_100308548 3300006871 Bacteria 1603
82 Ga0075429_100047960 3300006880 Bacteria 3715
83 Ga0075429_100052681 3300006880 Bacteria 3541
84 Ga0075429_100143646 3300006880 Bacteria 2089
85 Ga0068865_100027960 3300006881 Bacteria 3731
86 Ga0075436_100000966 3300006914 Bacteria 19290
87 Ga0075436_100023785 3300006914 Unclassified 4210
88 Ga0075436_100067066 3300006914 Bacteria 2480
89 Ga0075436_100071038 3300006914 Bacteria 2407
90 Ga0097620_100013026 3300006931 Bacteria 8355
91 Ga0097620_100178283 3300006931 Bacteria 2207
92 Ga0075435_100001240 3300007076 Bacteria 16339
93 Ga0075435_100011423 3300007076 Bacteria 6533
94 Ga0075435_100149510 3300007076 Bacteria 1963
95 Ga0075435_100173627 3300007076 Bacteria 1819
96 Ga0075435_100256029 3300007076 Unclassified 1491
97 Ga0099794_10022912 3300007265 Bacteria 2851
98 Ga0099795_10025416 3300007788 Bacteria 1986
99 Ga0099795_10026510 3300007788 Bacteria 1952
100 Ga0105240_10043724 3300009093 Bacteria 5696
101 Ga0111539_10027640 3300009094 Bacteria 6929
102 Ga0105245_10026312 3300009098 Bacteria 5120
103 Ga0114129_10051568 3300009147 Bacteria 5776
104 Ga0114129_10107818 3300009147 Bacteria 3846
105 Ga0114129_10178771 3300009147 Bacteria 2889
106 Ga0114129_10203396 3300009147 Bacteria 2681
107 Ga0105241_10053082 3300009174 Bacteria 3098
108 Ga0105242_10037828 3300009176 Bacteria 3878
109 Ga0105242_10065230 3300009176 Bacteria 3003
110 Ga0105248_10017051 3300009177 Bacteria 7998
111 Ga0105248_10031979 3300009177 Bacteria 5880
112 Ga0099796_10016046 3300010159 Bacteria 2204
113 Ga0105246_10050239 3300011119 Bacteria 2860
114 Ga0157373_10036061 3300013100 Bacteria 3550
115 Ga0157371_10009335 3300013102 Bacteria 7733
116 Ga0157370_10011258 3300013104 Bacteria 9378
117 Ga0157369_10015888 3300013105 Bacteria 8476
118 Ga0157369_10249606 3300013105 Bacteria 1852
119 Ga0157374_10000378 3300013296 Bacteria 40940
120 Ga0157378_10002038 3300013297 Bacteria 18101
121 Ga0157378_10012807 3300013297 Bacteria 7343
122 Ga0157378_10052982 3300013297 Bacteria 3611
123 Ga0157372_10007594 3300013307 Bacteria 11527
124 Ga0157372_10176794 3300013307 Bacteria 2471
125 Ga0224572_1001099 3300024225 Bacteria 3808
126 Ga0224572_1003994 3300024225 Bacteria 2534
127 Ga0228598_1000041 3300024227 Bacteria 18143
128 Ga0228598_1001564 3300024227 Bacteria 5010
129 Ga0228598_1002686 3300024227 Bacteria 3854
130 Ga0207699_10031079 3300025906 Unclassified 2995
131 Ga0207684_10015963 3300025910 Bacteria 6454
132 Ga0207684_10022242 3300025910 Bacteria 5414
133 Ga0207684_10044628 3300025910 Bacteria 3759
134 Ga0207684_10060157 3300025910 Bacteria 3226
135 Ga0207684_10110975 3300025910 Bacteria 2348
136 Ga0207654_10028710 3300025911 Bacteria 3035
137 Ga0207695_10022691 3300025913 Bacteria 7114
138 Ga0207695_10052189 3300025913 Unclassified 4286
139 Ga0207693_10001035 3300025915 Bacteria 24894
140 Ga0207693_10032041 3300025915 Bacteria 4150
141 Ga0207693_10060009 3300025915 Bacteria 2979
142 Ga0207663_10004444 3300025916 Bacteria 6974
143 Ga0207663_10030445 3300025916 Unclassified 3184
144 Ga0207660_10210280 3300025917 Bacteria 1523
145 Ga0207657_10098538 3300025919 Unclassified 2429
146 Ga0207646_10000054 3300025922 Bacteria 160414
147 Ga0207646_10013421 3300025922 Bacteria 7837
148 Ga0207646_10015411 3300025922 Bacteria 7221
149 Ga0207646_10084224 3300025922 Bacteria 2845
150 Ga0207646_10091157 3300025922 Bacteria 2728
151 Ga0207646_10187051 3300025922 Bacteria 1870
152 Ga0207700_10012777 3300025928 Bacteria 5430
153 Ga0207686_10031328 3300025934 Bacteria 3156
154 Ga0207665_10002617 3300025939 Bacteria 12108
155 Ga0207665_10017686 3300025939 Bacteria 4685
156 Ga0207711_10098001 3300025941 Bacteria 2590
157 Ga0207689_10050208 3300025942 Bacteria 3440
158 Ga0207661_10036968 3300025944 Bacteria 3815
159 Ga0207679_10053019 3300025945 Bacteria 2977
160 Ga0207667_10007544 3300025949 Bacteria 13052
161 Ga0207640_10007791 3300025981 Bacteria 5916
162 Ga0207677_10002117 3300026023 Bacteria 10421
163 Ga0207703_10007160 3300026035 Bacteria 8873
164 Ga0207702_10008565 3300026078 Bacteria 8621
165 Ga0207641_10005072 3300026088 Bacteria 11292
166 Ga0207648_10013189 3300026089 Bacteria 7701
167 Ga0207676_10003039 3300026095 Bacteria 11978
168 Ga0207674_10007585 3300026116 Bacteria 12644
169 Ga0209588_1000126 3300027671 Bacteria 22559
170 Ga0207428_10013530 3300027907 Bacteria 7123
171 Ga0265354_1002497 3300028016 Bacteria 2262
172 Ga0268265_10069248 3300028380 Bacteria 2739
173 Ga0268264_10069171 3300028381 Bacteria 2985
174 Ga0265319_1006085 3300028563 Bacteria 5655
175 Ga0265334_10010191 3300028573 Bacteria 3967
176 Ga0265318_10000039 3300028577 Bacteria 135854
177 Ga0265762_1000329 3300030760 Bacteria 8021
178 Ga0265762_1002302 3300030760 Bacteria 3451
179 Ga0265770_1005719 3300030878 Bacteria 1720
180 Ga0265760_10001948 3300031090 Bacteria 6060
181 Ga0265760_10026702 3300031090 Unclassified 1690
182 Ga0265332_10000210 3300031238 Bacteria 47356
183 Ga0265328_10002502 3300031239 Bacteria 8244
184 Ga0265320_10000704 3300031240 Bacteria 25526
185 Ga0265325_10009969 3300031241 Bacteria 5524
186 Ga0265329_10003811 3300031242 Bacteria 6474
187 Ga0265331_10016680 3300031250 Bacteria 3849
188 Ga0265314_10015362 3300031711 Bacteria 6078
189 Ga0265342_10000756 3300031712 Bacteria 33071
190 Ga0373926_0026402 3300035083 Bacteria 2031
191 Ga0373943_0026710 3300035170 Bacteria 2707
192 Ga0373946_0008540 3300035171 Bacteria 3759
193 Ga0373935_0016035 3300035692 Bacteria 4534
194 Ga0373927_0000372 3300035695 Bacteria 34696
195 Ga0373927_0019892 3300035695 Bacteria 4402
196 Ga0373947_0009326 3300035725 Bacteria 5638
197 Ga0373947_0010205 3300035725 Bacteria 5392
198 Ga0373937_0023730 3300036401 Bacteria 5528
199 Ga0373937_0200996 3300036401 Bacteria 1873
200 Ga0373925_0000333 3300037068 Bacteria 48976
201 Ga0373925_0005812 3300037068 Bacteria 9158
202 Ga0436363_1549537 3300039450 Bacteria 5465
203 Ga0451577_0054778 3300042876 Bacteria 3560
204 Ga0453683_0014199 3300044673 Bacteria 5177
205 Ga0453683_0120438 3300044673 Bacteria 1652
206 Ga0453684_0283526 3300044712 Unclassified 1888
207 Ga0466957_0227741 3300044842 Bacteria 1233
208 Ga0451576_0003224 3300045051 Bacteria 22722
209 Ga0495580_0020568 3300046472 Bacteria 4882
210 Ga0495582_0000096 3300046473 Bacteria 44984
211 Ga0495666_0036978 3300046526 Bacteria 2376
212 Ga0495666_0052499 3300046526 Bacteria 1957
213 Ga0495587_0044051 3300046536 Bacteria 2655
214 Ga0496104_0164154 3300048907 Bacteria 2130
215 Ga0496112_0034216 3300048915 Bacteria 4943
216 Ga0496112_0081078 3300048915 Bacteria 3209
217 Ga0496112_0310374 3300048915 Bacteria 1522
218 nmdc:mga05p37_123322_c1 3300050507 Bacteria 3183
219 nmdc:mga05p37_131293_c1 3300050507 Bacteria 3073
220 nmdc:mga05p37_228591_c1 3300050507 Bacteria 2242
221 nmdc:mga05p37_52694_c1 3300050507 Bacteria 5002
222 nmdc:mga05p37_61314_c1 3300050507 Bacteria 4630
223 nmdc:mga09592_48492_c1 3300050508 Bacteria 3580
224 nmdc:mga06r32_53512_c1 3300050510 Bacteria 3867
225 nmdc:mga0n895_1923_c1 3300050512 Bacteria 15916
226 nmdc:mga0n895_2246_c1 3300050512 Bacteria 14964
227 nmdc:mga0n895_22748_c1 3300050512 Bacteria 5879
228 nmdc:mga0n895_332799_c1 3300050512 Bacteria 1538
229 nmdc:mga0n895_57714_c1 3300050512 Bacteria 3827
230 nmdc:mga0n895_58582_c1 3300050512 Bacteria 3797
231 nmdc:mga0rr50_13590_c1 3300050513 Bacteria 5307
232 nmdc:mga0rr50_27524_c1 3300050513 Bacteria 3982
233 nmdc:mga0rr50_4327_c1 3300050513 Bacteria 8327
234 nmdc:mga0rr50_97683_c1 3300050513 Unclassified 2300
235 nmdc:mga08x19_110273_c1 3300050514 Bacteria 1835
236 nmdc:mga08x19_47318_c1 3300050514 Plasmid 2753
237 nmdc:mga08x19_599_c1 3300050514 Bacteria 23392
238 nmdc:mga08x19_7374_c1 3300050514 Bacteria 6533
239 nmdc:mga0a205_125663_c1 3300050515 Bacteria 2464
240 nmdc:mga0a205_19988_c2 3300050515 Bacteria 5420
241 nmdc:mga0a205_206102_c1 3300050515 Unclassified 1855
242 nmdc:mga0a205_29094_c1 3300050515 Bacteria 5287
243 nmdc:mga0a205_5572_c1 3300050515 Bacteria 11344
244 nmdc:mga0a205_95868_c1 3300050515 Bacteria 2866
245 Ga0466962_0086849 3300061719 Bacteria 1498

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300030878 Ga0265770_1005719 Ga0265770_10057191 342
2 3300061719 Ga0466962_0086849 Ga0466962_0086849_436_1473 342
3 3300050513 nmdc:mga0rr50_4327_c1 nmdc:mga0rr50_4327_c1_3069_4199 373
4 3300050508 nmdc:mga09592_48492_c1 nmdc:mga09592_48492_c1_768_1928 383
5 3300050513 nmdc:mga0rr50_13590_c1 nmdc:mga0rr50_13590_c1_42_1202 383
6 3300050514 nmdc:mga08x19_599_c1 nmdc:mga08x19_599_c1_503_1663 383
7 3300050514 nmdc:mga08x19_7374_c1 nmdc:mga08x19_7374_c1_2670_3830 383
8 3300039450 Ga0436363_1549537 Ga0436363_1549537_3760_4959 389
9 3300044842 Ga0466957_0227741 Ga0466957_0227741_18_1214 395
10 3300005536 Ga0070697_100022872 Ga0070697_1000228724 398
11 3300006844 Ga0075428_100003020 Ga0075428_10000302012 400
12 3300036401 Ga0373937_0023730 Ga0373937_0023730_2553_3779 400
13 3300044673 Ga0453683_0014199 Ga0453683_0014199_2483_3700 401
14 3300045051 Ga0451576_0003224 Ga0451576_0003224_19736_20953 401
15 3300046526 Ga0495666_0036978 Ga0495666_0036978_464_1681 401
16 3300050515 nmdc:mga0a205_125663_c1 nmdc:mga0a205_125663_c1_894_2129 401
17 3300028577 Ga0265318_10000039 Ga0265318_1000003926 405
18 3300005434 Ga0070709_10078630 Ga0070709_100786303 406
19 3300005439 Ga0070711_100000159 Ga0070711_10000015936 406
20 3300005439 Ga0070711_100062093 Ga0070711_1000620933 406
21 3300005445 Ga0070708_100069210 Ga0070708_1000692103 406
22 3300005564 Ga0070664_100343779 Ga0070664_1003437791 406
23 3300006175 Ga0070712_100006496 Ga0070712_1000064965 406
24 3300024225 Ga0224572_1001099 Ga0224572_10010993 406
25 3300024225 Ga0224572_1003994 Ga0224572_10039942 406
26 3300024227 Ga0228598_1000041 Ga0228598_100004116 406
27 3300025915 Ga0207693_10001035 Ga0207693_1000103514 406
28 3300025916 Ga0207663_10004444 Ga0207663_100044443 406
29 3300025919 Ga0207657_10098538 Ga0207657_100985383 406
30 3300025922 Ga0207646_10187051 Ga0207646_101870512 406
31 3300030760 Ga0265762_1002302 Ga0265762_10023025 406
32 3300031090 Ga0265760_10026702 Ga0265760_100267022 406
33 3300048915 Ga0496112_0034216 Ga0496112_0034216_696_1925 406
34 3300005295 Ga0065707_10103853 Ga0065707_101038533 407
35 3300005331 Ga0070670_100021898 Ga0070670_1000218984 407
36 3300005334 Ga0068869_100010648 Ga0068869_1000106482 407
37 3300005336 Ga0070680_100246175 Ga0070680_1002461751 407
38 3300005338 Ga0068868_100012336 Ga0068868_1000123363 407
39 3300005434 Ga0070709_10028909 Ga0070709_100289091 407
40 3300005434 Ga0070709_10051505 Ga0070709_100515052 407
41 3300005436 Ga0070713_100082632 Ga0070713_1000826322 407
42 3300005436 Ga0070713_100101928 Ga0070713_1001019283 407
43 3300005436 Ga0070713_100197427 Ga0070713_1001974271 407
44 3300005439 Ga0070711_100025186 Ga0070711_1000251865 407
45 3300005444 Ga0070694_100000183 Ga0070694_10000018311 407
46 3300005445 Ga0070708_100007575 Ga0070708_1000075753 407
47 3300005445 Ga0070708_100029805 Ga0070708_1000298055 407
48 3300005445 Ga0070708_100094659 Ga0070708_1000946593 407
49 3300005456 Ga0070678_100025660 Ga0070678_1000256603 407
50 3300005458 Ga0070681_10074607 Ga0070681_100746073 407
51 3300005459 Ga0068867_100007989 Ga0068867_1000079893 407
52 3300005467 Ga0070706_100018766 Ga0070706_1000187666 407
53 3300005467 Ga0070706_100023583 Ga0070706_1000235837 407
54 3300005467 Ga0070706_100100891 Ga0070706_1001008913 407
55 3300005467 Ga0070706_100107874 Ga0070706_1001078744 407
56 3300005467 Ga0070706_100207221 Ga0070706_1002072212 407
57 3300005467 Ga0070706_100222631 Ga0070706_1002226312 407
58 3300005468 Ga0070707_100007725 Ga0070707_1000077253 407
59 3300005468 Ga0070707_100164515 Ga0070707_1001645153 407
60 3300005468 Ga0070707_100199480 Ga0070707_1001994803 407
61 3300005468 Ga0070707_100268995 Ga0070707_1002689951 407
62 3300005471 Ga0070698_100021419 Ga0070698_1000214194 407
63 3300005471 Ga0070698_100105218 Ga0070698_1001052182 407
64 3300005471 Ga0070698_100111986 Ga0070698_1001119862 407
65 3300005471 Ga0070698_100134439 Ga0070698_1001344392 407
66 3300005471 Ga0070698_100162405 Ga0070698_1001624053 407
67 3300005518 Ga0070699_100009477 Ga0070699_1000094775 407
68 3300005518 Ga0070699_100054887 Ga0070699_1000548873 407
69 3300005518 Ga0070699_100121569 Ga0070699_1001215693 407
70 3300005530 Ga0070679_100040491 Ga0070679_1000404914 407
71 3300005535 Ga0070684_100053409 Ga0070684_1000534094 407
72 3300005536 Ga0070697_100024261 Ga0070697_1000242614 407
73 3300005536 Ga0070697_100027118 Ga0070697_1000271186 407
74 3300005563 Ga0068855_100010368 Ga0068855_1000103683 407
75 3300005563 Ga0068855_100323908 Ga0068855_1003239082 407
76 3300005564 Ga0070664_100006026 Ga0070664_1000060269 407
77 3300005577 Ga0068857_100003857 Ga0068857_1000038573 407
78 3300005578 Ga0068854_100003390 Ga0068854_1000033907 407
79 3300005614 Ga0068856_100001119 Ga0068856_1000011198 407
80 3300005617 Ga0068859_100013026 Ga0068859_1000130267 407
81 3300005617 Ga0068859_100178281 Ga0068859_1001782812 407
82 3300005718 Ga0068866_10001505 Ga0068866_100015053 407
83 3300005842 Ga0068858_100021448 Ga0068858_1000214483 407
84 3300005843 Ga0068860_100015409 Ga0068860_1000154098 407
85 3300005844 Ga0068862_100103150 Ga0068862_1001031503 407
86 3300005937 Ga0081455_10001890 Ga0081455_1000189025 407
87 3300005937 Ga0081455_10054468 Ga0081455_100544682 407
88 3300005983 Ga0081540_1003003 Ga0081540_100300317 407
89 3300006028 Ga0070717_10002346 Ga0070717_1000234613 407
90 3300006028 Ga0070717_10035487 Ga0070717_100354872 407
91 3300006028 Ga0070717_10072627 Ga0070717_100726273 407
92 3300006173 Ga0070716_100000783 Ga0070716_1000007833 407
93 3300006175 Ga0070712_100020399 Ga0070712_1000203992 407
94 3300006237 Ga0097621_100021497 Ga0097621_1000214974 407
95 3300006847 Ga0075431_100057803 Ga0075431_1000578034 407
96 3300006847 Ga0075431_100117431 Ga0075431_1001174313 407
97 3300006852 Ga0075433_10021376 Ga0075433_100213764 407
98 3300006852 Ga0075433_10028713 Ga0075433_100287133 407
99 3300006852 Ga0075433_10053045 Ga0075433_100530453 407
100 3300006852 Ga0075433_10074063 Ga0075433_100740633 407
101 3300006871 Ga0075434_100001622 Ga0075434_10000162213 407
102 3300006871 Ga0075434_100015154 Ga0075434_1000151546 407
103 3300006871 Ga0075434_100016182 Ga0075434_1000161824 407
104 3300006871 Ga0075434_100021194 Ga0075434_1000211945 407
105 3300006871 Ga0075434_100077453 Ga0075434_1000774533 407
106 3300006871 Ga0075434_100308548 Ga0075434_1003085482 407
107 3300006880 Ga0075429_100047960 Ga0075429_1000479604 407
108 3300006880 Ga0075429_100052681 Ga0075429_1000526814 407
109 3300006880 Ga0075429_100143646 Ga0075429_1001436461 407
110 3300006881 Ga0068865_100027960 Ga0068865_1000279603 407
111 3300006914 Ga0075436_100000966 Ga0075436_1000009664 407
112 3300006914 Ga0075436_100023785 Ga0075436_1000237852 407
113 3300006914 Ga0075436_100067066 Ga0075436_1000670664 407
114 3300006914 Ga0075436_100071038 Ga0075436_1000710382 407
115 3300006931 Ga0097620_100013026 Ga0097620_1000130263 407
116 3300006931 Ga0097620_100178283 Ga0097620_1001782832 407
117 3300007076 Ga0075435_100001240 Ga0075435_10000124014 407
118 3300007076 Ga0075435_100011423 Ga0075435_1000114234 407
119 3300007076 Ga0075435_100149510 Ga0075435_1001495102 407
120 3300007076 Ga0075435_100173627 Ga0075435_1001736271 407
121 3300007076 Ga0075435_100256029 Ga0075435_1002560291 407
122 3300007265 Ga0099794_10022912 Ga0099794_100229123 407
123 3300007788 Ga0099795_10025416 Ga0099795_100254163 407
124 3300007788 Ga0099795_10026510 Ga0099795_100265101 407
125 3300009093 Ga0105240_10043724 Ga0105240_100437244 407
126 3300009094 Ga0111539_10027640 Ga0111539_100276403 407
127 3300009098 Ga0105245_10026312 Ga0105245_100263124 407
128 3300009147 Ga0114129_10051568 Ga0114129_100515684 407
129 3300009147 Ga0114129_10107818 Ga0114129_101078183 407
130 3300009147 Ga0114129_10178771 Ga0114129_101787712 407
131 3300009147 Ga0114129_10203396 Ga0114129_102033964 407
132 3300009174 Ga0105241_10053082 Ga0105241_100530822 407
133 3300009176 Ga0105242_10037828 Ga0105242_100378281 407
134 3300009176 Ga0105242_10065230 Ga0105242_100652303 407
135 3300009177 Ga0105248_10017051 Ga0105248_100170516 407
136 3300009177 Ga0105248_10031979 Ga0105248_100319794 407
137 3300010159 Ga0099796_10016046 Ga0099796_100160462 407
138 3300011119 Ga0105246_10050239 Ga0105246_100502392 407
139 3300013100 Ga0157373_10036061 Ga0157373_100360614 407
140 3300013102 Ga0157371_10009335 Ga0157371_100093355 407
141 3300013104 Ga0157370_10011258 Ga0157370_100112582 407
142 3300013105 Ga0157369_10015888 Ga0157369_100158888 407
143 3300013105 Ga0157369_10249606 Ga0157369_102496062 407
144 3300013296 Ga0157374_10000378 Ga0157374_1000037829 407
145 3300013297 Ga0157378_10002038 Ga0157378_100020387 407
146 3300013297 Ga0157378_10012807 Ga0157378_100128075 407
147 3300013297 Ga0157378_10052982 Ga0157378_100529822 407
148 3300013307 Ga0157372_10007594 Ga0157372_100075945 407
149 3300013307 Ga0157372_10176794 Ga0157372_101767942 407
150 3300024227 Ga0228598_1001564 Ga0228598_10015643 407
151 3300024227 Ga0228598_1002686 Ga0228598_10026864 407
152 3300025906 Ga0207699_10031079 Ga0207699_100310792 407
153 3300025910 Ga0207684_10015963 Ga0207684_100159633 407
154 3300025910 Ga0207684_10022242 Ga0207684_100222424 407
155 3300025910 Ga0207684_10044628 Ga0207684_100446284 407
156 3300025910 Ga0207684_10060157 Ga0207684_100601573 407
157 3300025910 Ga0207684_10110975 Ga0207684_101109752 407
158 3300025911 Ga0207654_10028710 Ga0207654_100287103 407
159 3300025913 Ga0207695_10022691 Ga0207695_100226915 407
160 3300025913 Ga0207695_10052189 Ga0207695_100521892 407
161 3300025915 Ga0207693_10032041 Ga0207693_100320412 407
162 3300025915 Ga0207693_10060009 Ga0207693_100600092 407
163 3300025916 Ga0207663_10030445 Ga0207663_100304452 407
164 3300025917 Ga0207660_10210280 Ga0207660_102102801 407
165 3300025922 Ga0207646_10000054 Ga0207646_10000054123 407
166 3300025922 Ga0207646_10013421 Ga0207646_100134216 407
167 3300025922 Ga0207646_10015411 Ga0207646_1001541110 407
168 3300025922 Ga0207646_10084224 Ga0207646_100842244 407
169 3300025922 Ga0207646_10091157 Ga0207646_100911572 407
170 3300025928 Ga0207700_10012777 Ga0207700_100127773 407
171 3300025934 Ga0207686_10031328 Ga0207686_100313282 407
172 3300025939 Ga0207665_10002617 Ga0207665_100026175 407
173 3300025939 Ga0207665_10017686 Ga0207665_100176863 407
174 3300025941 Ga0207711_10098001 Ga0207711_100980012 407
175 3300025942 Ga0207689_10050208 Ga0207689_100502084 407
176 3300025944 Ga0207661_10036968 Ga0207661_100369683 407
177 3300025945 Ga0207679_10053019 Ga0207679_100530192 407
178 3300025949 Ga0207667_10007544 Ga0207667_100075443 407
179 3300025981 Ga0207640_10007791 Ga0207640_100077915 407
180 3300026023 Ga0207677_10002117 Ga0207677_1000211710 407
181 3300026035 Ga0207703_10007160 Ga0207703_100071605 407
182 3300026078 Ga0207702_10008565 Ga0207702_100085655 407
183 3300026088 Ga0207641_10005072 Ga0207641_100050724 407
184 3300026089 Ga0207648_10013189 Ga0207648_100131893 407
185 3300026095 Ga0207676_10003039 Ga0207676_100030398 407
186 3300026116 Ga0207674_10007585 Ga0207674_1000758510 407
187 3300027671 Ga0209588_1000126 Ga0209588_10001264 407
188 3300027907 Ga0207428_10013530 Ga0207428_100135302 407
189 3300028016 Ga0265354_1002497 Ga0265354_10024973 407
190 3300028380 Ga0268265_10069248 Ga0268265_100692482 407
191 3300028381 Ga0268264_10069171 Ga0268264_100691713 407
192 3300028563 Ga0265319_1006085 Ga0265319_10060852 407
193 3300028573 Ga0265334_10010191 Ga0265334_100101912 407
194 3300030760 Ga0265762_1000329 Ga0265762_100032910 407
195 3300031090 Ga0265760_10001948 Ga0265760_100019482 407
196 3300031238 Ga0265332_10000210 Ga0265332_1000021038 407
197 3300031239 Ga0265328_10002502 Ga0265328_100025025 407
198 3300031240 Ga0265320_10000704 Ga0265320_1000070417 407
199 3300031241 Ga0265325_10009969 Ga0265325_100099696 407
200 3300031242 Ga0265329_10003811 Ga0265329_100038111 407
201 3300031250 Ga0265331_10016680 Ga0265331_100166802 407
202 3300031711 Ga0265314_10015362 Ga0265314_100153623 407
203 3300031712 Ga0265342_10000756 Ga0265342_100007563 407
204 3300035083 Ga0373926_0026402 Ga0373926_0026402_246_1484 407
205 3300035170 Ga0373943_0026710 Ga0373943_0026710_1374_2612 407
206 3300035171 Ga0373946_0008540 Ga0373946_0008540_534_1772 407
207 3300035692 Ga0373935_0016035 Ga0373935_0016035_890_2122 407
208 3300035695 Ga0373927_0000372 Ga0373927_0000372_25030_26268 407
209 3300035695 Ga0373927_0019892 Ga0373927_0019892_2617_3849 407
210 3300035725 Ga0373947_0009326 Ga0373947_0009326_2678_3910 407
211 3300035725 Ga0373947_0010205 Ga0373947_0010205_3816_5054 407
212 3300036401 Ga0373937_0200996 Ga0373937_0200996_94_1326 407
213 3300037068 Ga0373925_0000333 Ga0373925_0000333_15204_16442 407
214 3300037068 Ga0373925_0005812 Ga0373925_0005812_4011_5243 407
215 3300042876 Ga0451577_0054778 Ga0451577_0054778_1221_2453 407
216 3300044673 Ga0453683_0120438 Ga0453683_0120438_13_1275 407
217 3300044712 Ga0453684_0283526 Ga0453684_0283526_24_1256 407
218 3300046472 Ga0495580_0020568 Ga0495580_0020568_1666_2898 407
219 3300046473 Ga0495582_0000096 Ga0495582_0000096_39018_40250 407
220 3300046526 Ga0495666_0052499 Ga0495666_0052499_591_1823 407
221 3300046536 Ga0495587_0044051 Ga0495587_0044051_1046_2278 407
222 3300048907 Ga0496104_0164154 Ga0496104_0164154_32_1270 407
223 3300048915 Ga0496112_0081078 Ga0496112_0081078_325_1575 407
224 3300048915 Ga0496112_0310374 Ga0496112_0310374_195_1427 407
225 3300050507 nmdc:mga05p37_123322_c1 nmdc:mga05p37_123322_c1_746_1978 407
226 3300050507 nmdc:mga05p37_131293_c1 nmdc:mga05p37_131293_c1_1428_2660 407
227 3300050507 nmdc:mga05p37_228591_c1 nmdc:mga05p37_228591_c1_887_2119 407
228 3300050507 nmdc:mga05p37_52694_c1 nmdc:mga05p37_52694_c1_2582_3805 407
229 3300050507 nmdc:mga05p37_61314_c1 nmdc:mga05p37_61314_c1_588_1820 407
230 3300050510 nmdc:mga06r32_53512_c1 nmdc:mga06r32_53512_c1_1918_3150 407
231 3300050512 nmdc:mga0n895_1923_c1 nmdc:mga0n895_1923_c1_2206_3462 407
232 3300050512 nmdc:mga0n895_2246_c1 nmdc:mga0n895_2246_c1_674_1906 407
233 3300050512 nmdc:mga0n895_22748_c1 nmdc:mga0n895_22748_c1_1067_2299 407
234 3300050512 nmdc:mga0n895_332799_c1 nmdc:mga0n895_332799_c1_178_1401 407
235 3300050512 nmdc:mga0n895_57714_c1 nmdc:mga0n895_57714_c1_642_1874 407
236 3300050512 nmdc:mga0n895_58582_c1 nmdc:mga0n895_58582_c1_1599_2831 407
237 3300050513 nmdc:mga0rr50_27524_c1 nmdc:mga0rr50_27524_c1_2612_3886 407
238 3300050513 nmdc:mga0rr50_97683_c1 nmdc:mga0rr50_97683_c1_817_2049 407
239 3300050514 nmdc:mga08x19_110273_c1 nmdc:mga08x19_110273_c1_287_1519 407
240 3300050514 nmdc:mga08x19_47318_c1 nmdc:mga08x19_47318_c1_335_1567 407
241 3300050515 nmdc:mga0a205_19988_c2 nmdc:mga0a205_19988_c2_2455_3711 407
242 3300050515 nmdc:mga0a205_206102_c1 nmdc:mga0a205_206102_c1_525_1799 407
243 3300050515 nmdc:mga0a205_29094_c1 nmdc:mga0a205_29094_c1_1332_2564 407
244 3300050515 nmdc:mga0a205_5572_c1 nmdc:mga0a205_5572_c1_8847_10079 407
245 3300050515 nmdc:mga0a205_95868_c1 nmdc:mga0a205_95868_c1_1039_2271 407

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF20239

DUF6596

Family of unknown function (DUF6596)

180

281

0.99

PF04542

Sigma70_r2

Sigma-70 region 2

12

79

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
2avp-assembly1.cif.gz_A crystal structure of an 8 repeat consensus tpr superhelix 0.8652 329 392
3ma5-assembly3.cif.gz_C crystal structure of the tetratricopeptide repeat domain protein q2s6c5_salrd from salinibacter ruber. northeast structural genomics consortium target srr115c. 0.8356 330 406
3ma5-assembly1.cif.gz_A crystal structure of the tetratricopeptide repeat domain protein q2s6c5_salrd from salinibacter ruber. northeast structural genomics consortium target srr115c. 0.828 330 406
2kcv-assembly1.cif.gz_A error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.8265 330 406
2kcl-assembly1.cif.gz_A solution nmr structure of tetratricopeptide repeat domain protein sru_0103 from salinibacter ruber, northeast structural genomics consortium (nesg) target srr115c 0.821 330 406
ID Description Score Start End Superfamily
af_P0AGM5_187_259_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8613 335 407 1.25.40.10
af_Q4D1B0_1_126_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8588 310 392 1.25.40.10
af_A9C3Q3_296_416_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8485 320 393 1.25.40.10
af_P0AGM5_187_259_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8405 335 407 1.25.40.10
af_A4IBT8_43_168_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.833 302 406 1.25.40.10
ID Description Score Start End GO Terms
AF-A0A258KAE6-F1-model_v4 RNA polymerase subunit sigma-24 0.9485 308 406
AF-A0A2V7EFJ8-F1-model_v4 RNA polymerase subunit sigma-24 0.9431 126 296 GO:0003677
GO:0006352
GO:0016987
AF-A0A2V7EFJ8-F1-model_v4 RNA polymerase subunit sigma-24 0.9326 126 296 GO:0003677
GO:0006352
GO:0016987
AF-A0A5C9B411-F1-model_v4 Putative RNA polymerase sigma factor containing a TPR repeat domain 0.9251 287 406
AF-A0A6B3HRZ0-F1-model_v4 RNA polymerase sigma factor 0.9129 208 322

Feature Viewer

pLDDT pTM Quality
82.73 0.66 Medium
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Predicted Structure (AlphaFold2)

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