F356996

General Info

Members Datasets Scaffolds Average Seq Length
245 174 490 293

Family's Representative Sequence

Representative Sequence 3300003320|rootH2_10024074|rootH2_100240742
Length 333
Sequence MTDVLQAHGLSERSRLKSADQFEKHRRYLTGLAYRMLGSLAEAEDAVQEAYLRWHGSDWSTVQSPRAFLGKIVTRICLDQMKSARAKRETYVGPWLPEPVLDAESLSAETTSDYATDLSVGLMLALERLSPLERAAFLLHDVFEVKFEEVARLLGRNQATCRQLAARGRTHIRESRPRFQVQPDKRNEILQAFMAAYRTGNVDGLASILSEDAVLYTDGGGKRRAALNPIIGRSKILALLAGLARKRAQPVADLRPATINGLPGCVATLANADLVTIAIEIADKEIRMIYVVRNPDKLKHVFDRACCGVPNHGERPQTDSAPIRPRRPGARPR

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
13 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
14 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
15 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
16 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
17 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
18 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
19 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
20 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
21 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
22 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
23 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
24 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
25 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
26 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
27 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
28 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
29 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
30 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
31 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
32 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
33 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
34 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
35 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
36 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
37 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
38 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
39 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
40 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
41 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
42 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
43 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
44 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
45 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
49 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
50 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
51 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
52 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
55 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
56 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
57 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
58 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
86 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
87 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
88 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
89 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
90 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
91 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
92 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
93 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
94 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
95 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
96 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
97 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
98 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
99 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
100 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
101 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
102 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
103 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
104 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
105 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
106 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
107 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
108 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
109 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
110 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
111 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
112 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
113 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
114 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
115 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
116 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
117 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
118 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
119 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
120 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
121 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
122 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
123 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
124 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
125 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
126 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
127 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
128 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
129 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
130 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
131 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
132 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
133 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
134 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
135 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
136 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
137 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
138 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
139 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
140 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
141 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
142 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
143 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
144 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
145 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
146 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
147 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
148 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
149 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
150 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
151 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
152 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
153 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
154 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
155 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
156 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
157 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
158 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
159 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
160 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
161 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
162 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
163 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
164 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
165 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
166 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
167 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
168 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
169 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
170 2582581305 Rhizorhabdus wittichii YR128 Isolate Rhizosphere
171 2667528175 Rhizobium tropici NFR14 Isolate Rhizoplane
172 2791355199
173 2824679649 Bradyrhizobium sp.HAMBI 2116 Isolate Unclassified
174 8056967851 Bradyrhizobium zhengyangense WYCCWR 12678 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 98.36
Metatranscriptomes 0
Isolates 1.64

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.22
Nodule 0.41
Rhizoplane 3.27
Rhizosphere 91.02
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10024074 3300003320 Bacteria 2929
2 rootL2_10235778 3300003322 Bacteria 1618
3 rootH1_10107400 3300003323 Bacteria 2943
4 rootH1_10202029 3300003323 Bacteria 1486
5 JGI25404J52841_10000439 3300003659 Bacteria 5858
6 JGI25404J52841_10013802 3300003659 Bacteria 1752
7 Ga0070658_10007917 3300005327 Bacteria 8556
8 Ga0070683_100000223 3300005329 Bacteria 38829
9 Ga0070683_100093213 3300005329 Bacteria 2829
10 Ga0070690_100149185 3300005330 Bacteria 1594
11 Ga0070670_100010328 3300005331 Bacteria 7969
12 Ga0068869_100117091 3300005334 Bacteria 2033
13 Ga0070682_100025265 3300005337 Bacteria 3543
14 Ga0070682_100258511 3300005337 Bacteria 1259
15 Ga0068868_100045028 3300005338 Bacteria 3451
16 Ga0070689_100068412 3300005340 Bacteria 2770
17 Ga0070661_100206558 3300005344 Bacteria 1502
18 Ga0070675_100069205 3300005354 Bacteria 2923
19 Ga0070671_100048379 3300005355 Bacteria 3536
20 Ga0070673_100018611 3300005364 Bacteria 4967
21 Ga0070673_100051345 3300005364 Bacteria 3229
22 Ga0070688_100043277 3300005365 Bacteria 2774
23 Ga0070688_100160560 3300005365 Bacteria 1544
24 Ga0070667_100101667 3300005367 Bacteria 2483
25 Ga0070709_10219499 3300005434 Bacteria 1355
26 Ga0070714_100217357 3300005435 Bacteria 1755
27 Ga0070713_100138798 3300005436 Bacteria 2151
28 Ga0070713_100216171 3300005436 Bacteria 1737
29 Ga0070713_100566469 3300005436 Bacteria 1077
30 Ga0070710_10153933 3300005437 Bacteria 1420
31 Ga0070711_100103755 3300005439 Bacteria 2073
32 Ga0070711_100218880 3300005439 Bacteria 1479
33 Ga0070681_10073629 3300005458 Bacteria 3378
34 Ga0070685_10045801 3300005466 Bacteria 2509
35 Ga0070698_100007741 3300005471 Bacteria 11624
36 Ga0070679_100161055 3300005530 Bacteria 2218
37 Ga0070679_100356402 3300005530 Bacteria 1410
38 Ga0070684_100034512 3300005535 Bacteria 4325
39 Ga0070684_100079704 3300005535 Bacteria 2895
40 Ga0070697_100260320 3300005536 Bacteria 1485
41 Ga0068853_100000826 3300005539 Bacteria 21641
42 Ga0070672_100034514 3300005543 Bacteria 3839
43 Ga0070665_100504312 3300005548 Bacteria 1221
44 Ga0068855_100122205 3300005563 Bacteria 2980
45 Ga0068855_100234344 3300005563 Bacteria 2053
46 Ga0068855_100403980 3300005563 Bacteria 1496
47 Ga0068855_100671186 3300005563 Bacteria 1111
48 Ga0070664_100083320 3300005564 Bacteria 2759
49 Ga0068856_100101533 3300005614 Bacteria 2869
50 Ga0068856_100203618 3300005614 Bacteria 1994
51 Ga0068864_100190811 3300005618 Bacteria 1878
52 Ga0081455_10045670 3300005937 Bacteria 3809
53 Ga0081455_10106135 3300005937 Bacteria 2243
54 Ga0081540_1000008 3300005983 Bacteria 203702
55 Ga0081540_1005500 3300005983 Bacteria 9448
56 Ga0081540_1006891 3300005983 Bacteria 8193
57 Ga0081540_1014712 3300005983 Bacteria 4996
58 Ga0081540_1020563 3300005983 Bacteria 3964
59 Ga0081540_1106437 3300005983 Bacteria 1196
60 Ga0081539_10014449 3300005985 Bacteria 5838
61 Ga0070717_10082650 3300006028 Bacteria 2700
62 Ga0075431_100185853 3300006847 Bacteria 2131
63 Ga0075434_100020798 3300006871 Bacteria 6370
64 Ga0075429_100345485 3300006880 Bacteria 1302
65 Ga0068865_100054499 3300006881 Bacteria 2779
66 Ga0111539_10461818 3300009094 Bacteria 1479
67 Ga0105245_10000111 3300009098 Bacteria 79021
68 Ga0105245_10123745 3300009098 Bacteria 2418
69 Ga0114129_10188114 3300009147 Bacteria 2805
70 Ga0105248_10318569 3300009177 Bacteria 1751
71 Ga0105237_10000102 3300009545 Bacteria 118684
72 Ga0105238_10005148 3300009551 Bacteria 12927
73 Ga0105238_10005804 3300009551 Bacteria 12224
74 Ga0105238_10351042 3300009551 Bacteria 1464
75 Ga0105239_10293451 3300010375 Bacteria 1831
76 Ga0157374_10085641 3300013296 Bacteria 2997
77 Ga0157372_10156304 3300013307 Bacteria 2634
78 Ga0163163_10079909 3300014325 Bacteria 3269
79 Ga0157379_10315318 3300014968 Bacteria 1427
80 Ga0157376_10054067 3300014969 Bacteria 3346
81 Ga0213872_10003418 3300021361 Bacteria 8825
82 Ga0207707_10110549 3300025912 Bacteria 2402
83 Ga0207671_10001330 3300025914 Bacteria 28894
84 Ga0207693_10031578 3300025915 Bacteria 4185
85 Ga0207660_10554516 3300025917 Bacteria 935
86 Ga0207649_10088938 3300025920 Bacteria 2018
87 Ga0207652_10001868 3300025921 Bacteria 18292
88 Ga0207652_10114439 3300025921 Bacteria 2395
89 Ga0207652_10289531 3300025921 Bacteria 1478
90 Ga0207694_10005380 3300025924 Bacteria 9857
91 Ga0207694_10007281 3300025924 Bacteria 8395
92 Ga0207650_10014386 3300025925 Bacteria 5499
93 Ga0207659_10086332 3300025926 Bacteria 2333
94 Ga0207687_10000780 3300025927 Bacteria 21460
95 Ga0207700_10055947 3300025928 Bacteria 2967
96 Ga0207700_10490311 3300025928 Bacteria 1087
97 Ga0207664_10127896 3300025929 Bacteria 2135
98 Ga0207664_10588711 3300025929 Bacteria 999
99 Ga0207644_10016302 3300025931 Bacteria 4999
100 Ga0207690_10209728 3300025932 Bacteria 1484
101 Ga0207706_10052537 3300025933 Bacteria 3598
102 Ga0207670_10039283 3300025936 Bacteria 3098
103 Ga0207691_10040050 3300025940 Bacteria 4332
104 Ga0207689_10037002 3300025942 Bacteria 4051
105 Ga0207661_10097548 3300025944 Bacteria 2461
106 Ga0207667_10304341 3300025949 Bacteria 1629
107 Ga0207667_10534281 3300025949 Bacteria 1187
108 Ga0207651_10011182 3300025960 Bacteria 5011
109 Ga0207677_10092007 3300026023 Bacteria 2207
110 Ga0207639_10023886 3300026041 Bacteria 4418
111 Ga0207708_10259330 3300026075 Bacteria 1403
112 Ga0207676_10122906 3300026095 Bacteria 2192
113 Ga0207683_10123146 3300026121 Bacteria 2329
114 Ga0268266_10452265 3300028379 Bacteria 1221
115 Ga0265338_10023083 3300028800 Bacteria 6408
116 Ga0265325_10037911 3300031241 Bacteria 2545
117 Ga0265339_10001185 3300031249 Bacteria 19713
118 Ga0307513_10016091 3300031456 Bacteria 9036
119 Ga0307509_10019492 3300031507 Bacteria 7732
120 Ga0307509_10108822 3300031507 Bacteria 2784
121 Ga0265313_10003372 3300031595 Bacteria 13004
122 Ga0307405_10166791 3300031731 Bacteria 1566
123 Ga0307410_10063203 3300031852 Bacteria 2539
124 Ga0307407_10067185 3300031903 Bacteria 2118
125 Ga0307412_10224163 3300031911 Bacteria 1443
126 Ga0307409_100264329 3300031995 Bacteria 1581
127 Ga0307416_100007097 3300032002 Bacteria 7080
128 Ga0307415_100001265 3300032126 Bacteria 11888
129 Ga0373934_0027829 3300035086 Bacteria 2199
130 Ga0373934_0085130 3300035086 Bacteria 1272
131 Ga0373949_0000297 3300035090 Bacteria 18029
132 Ga0373923_0041801 3300035111 Bacteria 1891
133 Ga0373954_0031493 3300035118 Bacteria 2449
134 Ga0373954_0060420 3300035118 Bacteria 1788
135 Ga0373943_0098445 3300035170 Bacteria 1526
136 Ga0373943_0145204 3300035170 Bacteria 1281
137 Ga0373955_0004103 3300035172 Bacteria 6429
138 Ga0373961_0000040 3300035241 Bacteria 77856
139 Ga0373924_0007240 3300035410 Bacteria 4000
140 Ga0373924_0173601 3300035410 Bacteria 948
141 Ga0373933_0002480 3300035724 Bacteria 10383
142 Ga0373933_0070073 3300035724 Bacteria 2132
143 Ga0373937_0011388 3300036401 Bacteria 7803
144 Ga0373937_0089306 3300036401 Bacteria 2853
145 Ga0373925_0020360 3300037068 Bacteria 4829
146 Ga0395900_0247058 3300037418 Bacteria 1787
147 Ga0395905_0006195 3300037471 Bacteria 12068
148 Ga0395901_0089613 3300038443 Bacteria 3219
149 Ga0436361_0869284 3300039447 Bacteria 1450
150 Ga0436361_1000865 3300039447 Bacteria 21851
151 Ga0436363_0599016 3300039450 Bacteria 3329
152 Ga0466971_0023439 3300044719 Bacteria 2752
153 Ga0466957_0055633 3300044842 Bacteria 2418
154 Ga0466958_0011542 3300045836 Bacteria 4977
155 Ga0466967_0184675 3300045976 Bacteria 1969
156 Ga0495592_0109376 3300046454 Bacteria 1958
157 Ga0495592_0191127 3300046454 Bacteria 1387
158 Ga0495629_0001927 3300046459 Bacteria 16174
159 Ga0495651_0003950 3300046462 Bacteria 11345
160 Ga0495651_0007463 3300046462 Bacteria 8362
161 Ga0495651_0216718 3300046462 Bacteria 1328
162 Ga0495653_0007215 3300046463 Bacteria 9105
163 Ga0495653_0049056 3300046463 Bacteria 3255
164 Ga0495662_0055173 3300046476 Bacteria 1920
165 Ga0495664_0001928 3300046477 Bacteria 11047
166 Ga0495594_0130347 3300046499 Bacteria 1424
167 Ga0495608_0001027 3300046511 Bacteria 19567
168 Ga0495618_0068686 3300046514 Bacteria 2253
169 Ga0495618_0221560 3300046514 Bacteria 1193
170 Ga0495628_0022234 3300046516 Bacteria 5211
171 Ga0495628_0161287 3300046516 Bacteria 1704
172 Ga0495652_0004731 3300046529 Bacteria 12968
173 Ga0495665_0029138 3300046531 Bacteria 2958
174 Ga0495665_0127491 3300046531 Bacteria 1333
175 Ga0495640_0003613 3300046533 Bacteria 12423
176 Ga0495640_0084995 3300046533 Bacteria 2097
177 Ga0495640_0094618 3300046533 Bacteria 1968
178 Ga0495640_0239243 3300046533 Bacteria 1140
179 Ga0495587_0002524 3300046536 Bacteria 12225
180 Ga0495645_0020778 3300046543 Bacteria 4742
181 Ga0495645_0154237 3300046543 Bacteria 1593
182 Ga0495667_0002067 3300046559 Bacteria 13327
183 Ga0495667_0015794 3300046559 Bacteria 5105
184 Ga0495667_0041141 3300046559 Bacteria 3065
185 Ga0495667_0158863 3300046559 Bacteria 1454
186 Ga0495634_0018004 3300046642 Bacteria 5034
187 Ga0495635_0011597 3300046663 Bacteria 6177
188 Ga0495635_0097793 3300046663 Bacteria 2007
189 Ga0495635_0199738 3300046663 Bacteria 1356
190 Ga0495657_0072751 3300046675 Bacteria 2241
191 Ga0495599_0021048 3300046678 Bacteria 4066
192 Ga0495623_0004472 3300046679 Bacteria 9182
193 Ga0495623_0035487 3300046679 Bacteria 3196
194 Ga0495646_0018922 3300046680 Bacteria 4361
195 Ga0495624_0046409 3300046690 Bacteria 2762
196 Ga0495600_0002090 3300046809 Bacteria 11280
197 Ga0495600_0063926 3300046809 Bacteria 2405
198 Ga0495600_0173348 3300046809 Bacteria 1392
199 Ga0495604_0007462 3300047317 Bacteria 8657
200 Ga0495604_0011079 3300047317 Bacteria 7156
201 Ga0495674_0011453 3300047319 Bacteria 8367
202 Ga0495674_0037320 3300047319 Bacteria 4366
203 Ga0495674_0101200 3300047319 Bacteria 2451
204 Ga0495676_0270538 3300047321 Bacteria 1153
205 Ga0495680_0021082 3300047322 Bacteria 5461
206 Ga0495680_0022896 3300047322 Bacteria 5202
207 Ga0495675_0086515 3300047444 Bacteria 1970
208 Ga0495602_0019052 3300048088 Bacteria 6826
209 Ga0495602_0072018 3300048088 Bacteria 2949
210 Ga0495602_0082008 3300048088 Bacteria 2708
211 Ga0495602_0324378 3300048088 Bacteria 1119
212 Ga0496104_0271945 3300048907 Bacteria 1607
213 Ga0496109_0105701 3300048912 Bacteria 2615
214 Ga0496111_0303008 3300048914 Bacteria 1185
215 Ga0496112_0020838 3300048915 Bacteria 6221
216 Ga0496112_0100073 3300048915 Bacteria 2869
217 Ga0496112_0410539 3300048915 Bacteria 1293
218 Ga0496113_0094409 3300048916 Bacteria 2311
219 Ga0501047_0057380 3300049581 Bacteria 3765
220 Ga0501047_0414872 3300049581 Bacteria 1178
221 Ga0501067_0003063 3300049583 Bacteria 9226
222 Ga0501067_0129632 3300049583 Bacteria 1403
223 Ga0501069_0042913 3300049585 Bacteria 2503
224 Ga0501073_0039835 3300049589 Bacteria 3328
225 Ga0501074_0193098 3300049590 Bacteria 1451
226 Ga0501080_0005510 3300049742 Bacteria 11299
227 Ga0501044_0274855 3300049823 Bacteria 1619
228 nmdc:mga09592_20447_c1 3300050508 Bacteria 5442
229 nmdc:mga0n895_92383_c1 3300050512 Bacteria 3029
230 nmdc:mga0rr50_97024_c1 3300050513 Bacteria 2307
231 nmdc:mga08x19_22285_c1 3300050514 Bacteria 3922
232 Ga0495601_0010728 3300053077 Bacteria 5466
233 Ga0495601_0029985 3300053077 Bacteria 3376
234 Ga0495612_0002777 3300053078 Bacteria 7244
235 Ga0495612_0005286 3300053078 Bacteria 5334
236 Ga0495595_0000384 3300053084 Bacteria 16765
237 Ga0495595_0006160 3300053084 Bacteria 4876
238 Ga0500618_005314 3300053125 Bacteria 3941
239 Ga0500590_032060 3300053148 Bacteria 2724
240 Ga0500636_0172879 3300053177 Bacteria 1167
241 2585263083 2582581305 Bacteria 4895574
242 2671123686 2667528175 Bacteria 7532676
243 2793076641
244 2824681110 2824679649 Bacteria 8248951
245 8056974386 8056967851 Bacteria 9038162
246 rootH2_10024074
247 rootL2_10235778
248 rootH1_10107400
249 rootH1_10202029
250 JGI25404J52841_10000439
251 JGI25404J52841_10013802
252 Ga0070658_10007917
253 Ga0070683_100000223
254 Ga0070683_100093213
255 Ga0070690_100149185
256 Ga0070670_100010328
257 Ga0068869_100117091
258 Ga0070682_100025265
259 Ga0070682_100258511
260 Ga0068868_100045028
261 Ga0070689_100068412
262 Ga0070661_100206558
263 Ga0070675_100069205
264 Ga0070671_100048379
265 Ga0070673_100018611
266 Ga0070673_100051345
267 Ga0070688_100043277
268 Ga0070688_100160560
269 Ga0070667_100101667
270 Ga0070709_10219499
271 Ga0070714_100217357
272 Ga0070713_100138798
273 Ga0070713_100216171
274 Ga0070713_100566469
275 Ga0070710_10153933
276 Ga0070711_100103755
277 Ga0070711_100218880
278 Ga0070681_10073629
279 Ga0070685_10045801
280 Ga0070698_100007741
281 Ga0070679_100161055
282 Ga0070679_100356402
283 Ga0070684_100034512
284 Ga0070684_100079704
285 Ga0070697_100260320
286 Ga0068853_100000826
287 Ga0070672_100034514
288 Ga0070665_100504312
289 Ga0068855_100122205
290 Ga0068855_100234344
291 Ga0068855_100403980
292 Ga0068855_100671186
293 Ga0070664_100083320
294 Ga0068856_100101533
295 Ga0068856_100203618
296 Ga0068864_100190811
297 Ga0081455_10045670
298 Ga0081455_10106135
299 Ga0081540_1000008
300 Ga0081540_1005500
301 Ga0081540_1006891
302 Ga0081540_1014712
303 Ga0081540_1020563
304 Ga0081540_1106437
305 Ga0081539_10014449
306 Ga0070717_10082650
307 Ga0075431_100185853
308 Ga0075434_100020798
309 Ga0075429_100345485
310 Ga0068865_100054499
311 Ga0111539_10461818
312 Ga0105245_10000111
313 Ga0105245_10123745
314 Ga0114129_10188114
315 Ga0105248_10318569
316 Ga0105237_10000102
317 Ga0105238_10005148
318 Ga0105238_10005804
319 Ga0105238_10351042
320 Ga0105239_10293451
321 Ga0157374_10085641
322 Ga0157372_10156304
323 Ga0163163_10079909
324 Ga0157379_10315318
325 Ga0157376_10054067
326 Ga0213872_10003418
327 Ga0207707_10110549
328 Ga0207671_10001330
329 Ga0207693_10031578
330 Ga0207660_10554516
331 Ga0207649_10088938
332 Ga0207652_10001868
333 Ga0207652_10114439
334 Ga0207652_10289531
335 Ga0207694_10005380
336 Ga0207694_10007281
337 Ga0207650_10014386
338 Ga0207659_10086332
339 Ga0207687_10000780
340 Ga0207700_10055947
341 Ga0207700_10490311
342 Ga0207664_10127896
343 Ga0207664_10588711
344 Ga0207644_10016302
345 Ga0207690_10209728
346 Ga0207706_10052537
347 Ga0207670_10039283
348 Ga0207691_10040050
349 Ga0207689_10037002
350 Ga0207661_10097548
351 Ga0207667_10304341
352 Ga0207667_10534281
353 Ga0207651_10011182
354 Ga0207677_10092007
355 Ga0207639_10023886
356 Ga0207708_10259330
357 Ga0207676_10122906
358 Ga0207683_10123146
359 Ga0268266_10452265
360 Ga0265338_10023083
361 Ga0265325_10037911
362 Ga0265339_10001185
363 Ga0307513_10016091
364 Ga0307509_10019492
365 Ga0307509_10108822
366 Ga0265313_10003372
367 Ga0307405_10166791
368 Ga0307410_10063203
369 Ga0307407_10067185
370 Ga0307412_10224163
371 Ga0307409_100264329
372 Ga0307416_100007097
373 Ga0307415_100001265
374 Ga0373934_0027829
375 Ga0373934_0085130
376 Ga0373949_0000297
377 Ga0373923_0041801
378 Ga0373954_0031493
379 Ga0373954_0060420
380 Ga0373943_0098445
381 Ga0373943_0145204
382 Ga0373955_0004103
383 Ga0373961_0000040
384 Ga0373924_0007240
385 Ga0373924_0173601
386 Ga0373933_0002480
387 Ga0373933_0070073
388 Ga0373937_0011388
389 Ga0373937_0089306
390 Ga0373925_0020360
391 Ga0395900_0247058
392 Ga0395905_0006195
393 Ga0395901_0089613
394 Ga0436361_0869284
395 Ga0436361_1000865
396 Ga0436363_0599016
397 Ga0466971_0023439
398 Ga0466957_0055633
399 Ga0466958_0011542
400 Ga0466967_0184675
401 Ga0495592_0109376
402 Ga0495592_0191127
403 Ga0495629_0001927
404 Ga0495651_0003950
405 Ga0495651_0007463
406 Ga0495651_0216718
407 Ga0495653_0007215
408 Ga0495653_0049056
409 Ga0495662_0055173
410 Ga0495664_0001928
411 Ga0495594_0130347
412 Ga0495608_0001027
413 Ga0495618_0068686
414 Ga0495618_0221560
415 Ga0495628_0022234
416 Ga0495628_0161287
417 Ga0495652_0004731
418 Ga0495665_0029138
419 Ga0495665_0127491
420 Ga0495640_0003613
421 Ga0495640_0084995
422 Ga0495640_0094618
423 Ga0495640_0239243
424 Ga0495587_0002524
425 Ga0495645_0020778
426 Ga0495645_0154237
427 Ga0495667_0002067
428 Ga0495667_0015794
429 Ga0495667_0041141
430 Ga0495667_0158863
431 Ga0495634_0018004
432 Ga0495635_0011597
433 Ga0495635_0097793
434 Ga0495635_0199738
435 Ga0495657_0072751
436 Ga0495599_0021048
437 Ga0495623_0004472
438 Ga0495623_0035487
439 Ga0495646_0018922
440 Ga0495624_0046409
441 Ga0495600_0002090
442 Ga0495600_0063926
443 Ga0495600_0173348
444 Ga0495604_0007462
445 Ga0495604_0011079
446 Ga0495674_0011453
447 Ga0495674_0037320
448 Ga0495674_0101200
449 Ga0495676_0270538
450 Ga0495680_0021082
451 Ga0495680_0022896
452 Ga0495675_0086515
453 Ga0495602_0019052
454 Ga0495602_0072018
455 Ga0495602_0082008
456 Ga0495602_0324378
457 Ga0496104_0271945
458 Ga0496109_0105701
459 Ga0496111_0303008
460 Ga0496112_0020838
461 Ga0496112_0100073
462 Ga0496112_0410539
463 Ga0496113_0094409
464 Ga0501047_0057380
465 Ga0501047_0414872
466 Ga0501067_0003063
467 Ga0501067_0129632
468 Ga0501069_0042913
469 Ga0501073_0039835
470 Ga0501074_0193098
471 Ga0501080_0005510
472 Ga0501044_0274855
473 nmdc:mga09592_20447_c1
474 nmdc:mga0n895_92383_c1
475 nmdc:mga0rr50_97024_c1
476 nmdc:mga08x19_22285_c1
477 Ga0495601_0010728
478 Ga0495601_0029985
479 Ga0495612_0002777
480 Ga0495612_0005286
481 Ga0495595_0000384
482 Ga0495595_0006160
483 Ga0500618_005314
484 Ga0500590_032060
485 Ga0500636_0172879
486 2585263083
487 2671123686
488 2793076641
489 2824681110
490 8056974386

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08281

Sigma70_r4_2

Sigma-70, region 4

119

172

0.96

PF04542

Sigma70_r2

Sigma-70 region 2

21

87

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
2o8x-assembly1.cif.gz_A "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9375 122 172
2o8x-assembly1.cif.gz_B "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9307 122 172
3vep-assembly4.cif.gz_H crystal structure of sigd4 in complex with its negative regulator rsda 0.9249 125 174
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.909 125 174
3hug-assembly2.cif.gz_E crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl 0.9079 121 175
ID Description Score Start End Superfamily
af_L0TCG5_5_78_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9503 22 95 1.10.1740.10
2o8xA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9375 122 172 1.10.10.10
af_P9WGH3_4_93_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9339 17 89 1.10.1740.10
2o8xB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9307 122 172 1.10.10.10
4cxfA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9306 125 174 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7Z8R883-F1-model_v4 deleted 0.9392 22 301
AF-A0A2A5YFW3-F1-model_v4 RNA polymerase sigma factor SigJ 0.9389 10 301 GO:0003677
GO:0006352
GO:0016987
AF-A0A1C4U1H3-F1-model_v4 RNA polymerase sigma-70 factor, ECF subfamily 0.9338 209 299 GO:0016987
AF-A0A5M3WJ65-F1-model_v4 DNA-directed RNA polymerase sigma-70 factor 0.9332 16 305 GO:0000428
GO:0003677
GO:0006352
GO:0016987
AF-A0A2A5YFW3-F1-model_v4 RNA polymerase sigma factor SigJ 0.9326 10 301 GO:0003677
GO:0006352
GO:0016987

Map