F355752

General Info

Members Datasets Scaffolds Average Seq Length
243 161 223 224

Family's Representative Sequence

Representative Sequence 3300033180|Ga0307510_10012778|Ga0307510_100127787
Length 260
Sequence MIDASDDRGGSCQLAVQRVRENAGTPARSAAPNVRRLPLMKLLLIEDNPAMQTTLQRSFERRGMQVVICGDGARALDRWQASVPDVVVLDLNLPGLDGLQVLAGARAAGLTTPVLILTARGAVGDRILGLNTGADDYLPKPFDLDELEARIRALVRRAPADHLTPEFCGLRVDPANAAVYLRGQVLDLPPRESALLRALLAQPGAAVAKERLTGLVFPGADQVQADAIEVVAYRLRKRLTDTGAQLVTLRGLGYLLKAES

Samples

Sample ID Description Type Environment
1 2511231026 Herbaspirillum sp. YR522 Isolate Rhizosphere
2 2513237088 Rhizobium mesoamericanum STM6155 Isolate Nodule
3 2547132374 Acidovorax radicis N35 Isolate Unclassified
4 2558860983 Allorhizobium undicola ATCC 700741 Isolate Rhizoplane
5 2643221570 Acidovorax sp. Root568 Isolate Unclassified
6 2643221596 Acidovorax sp. Root70 Isolate Unclassified
7 2643221609 Acidovorax sp. Root217 Isolate Unclassified
8 2643221611 Acidovorax sp. Root219 Isolate Unclassified
9 2643221652 Acidovorax sp. Root402 Isolate Unclassified
10 2643221654 Rhizobacter sp. Root404 Isolate Unclassified
11 2643221717 Acidovorax sp. Root267 Isolate Unclassified
12 2738543012 Acidovorax sp. CF301 Isolate Unclassified
13 2816332133 Acidovorax radicis 2721A Isolate Unclassified
14 2881101125 Ramlibacter rhizophilus CCTCC AB2015357 Isolate Rhizosphere
15 2894023352 Diaphorobacter ruginosibacter DSM 27467 Isolate Nodule
16 2990710928 Acidovorax delafieldii SLBN-75 Isolate Rhizosphere
17 2996887358 Rhizobium sp. R711 Isolate Nodule
18 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
19 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
20 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
21 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
22 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
23 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
24 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
25 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
26 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
27 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
28 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
29 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
30 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
31 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
32 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
33 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
34 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
35 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
36 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
37 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
38 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
39 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
40 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
41 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
42 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
43 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
44 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
45 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
46 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
47 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
48 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
49 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
50 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
51 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
52 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
53 3300012497 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 Metagenome Rhizosphere
54 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
55 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
56 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
57 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
58 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
60 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300027252 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM (SPAdes) (version 2) Metagenome Rhizosphere
85 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
86 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
88 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
89 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
90 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
91 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
92 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
93 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
94 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
95 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
96 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
97 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
98 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
99 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
100 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
101 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
102 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
103 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
104 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
105 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
106 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
107 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
108 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
109 3300042011 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z062817_5204 Metagenome Rhizosphere
110 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
111 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
112 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
113 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
114 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
115 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
116 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
117 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
118 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
119 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
120 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
121 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
122 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
123 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
124 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
125 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
126 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
127 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
130 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
132 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
133 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
134 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
135 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
138 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
139 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
140 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
141 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
142 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
143 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
144 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
145 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
146 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
147 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
148 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
149 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
150 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
151 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
152 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
153 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
154 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
155 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
156 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
157 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
158 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
159 8005258706 Rhizobium sp. R693 Isolate Nodule
160 8005321885 Rhizobium sp. R72 Isolate Nodule
161 8055431914 Allorhizobium sonneratiae BGMRC 0089 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.77
Metatranscriptomes 0
Isolates 8.23

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.4
Nodule 3.29
Rhizoplane 0.82
Rhizosphere 68.31
Stem 0
Stem Tuber 0
Unclassified 13.17

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10026655 3300003316 Bacteria 6309
2 rootL2_10014134 3300003322 Bacteria 9400
3 rootH1_10020879 3300003323 Bacteria 5612
4 rootH1_10020880 3300003323 Bacteria 6520
5 Ga0055524_1003257 3300003775 Bacteria 7948
6 Ga0055531_10016063 3300003794 Bacteria 3256
7 Ga0055543_1002292 3300004625 Bacteria 6461
8 Ga0065165_1000600 3300005262 Bacteria 52753
9 Ga0070676_10006410 3300005328 Bacteria 6287
10 Ga0070670_100036519 3300005331 Bacteria 4228
11 Ga0068869_100046076 3300005334 Bacteria 3143
12 Ga0068868_100053983 3300005338 Bacteria 3166
13 Ga0068868_100054535 3300005338 Bacteria 3151
14 Ga0070661_100000229 3300005344 Bacteria 46608
15 Ga0070675_100082118 3300005354 Bacteria 2689
16 Ga0070671_100037296 3300005355 Bacteria 4030
17 Ga0070673_100023887 3300005364 Bacteria 4472
18 Ga0070667_100612198 3300005367 Bacteria 1004
19 Ga0070662_100083617 3300005457 Bacteria 2383
20 Ga0068867_100201124 3300005459 Bacteria 1595
21 Ga0070672_100026715 3300005543 Bacteria 4301
22 Ga0070665_100030582 3300005548 Bacteria 5416
23 Ga0070664_100001192 3300005564 Bacteria 20711
24 Ga0068864_100010936 3300005618 Bacteria 7500
25 Ga0068863_100143865 3300005841 Bacteria 2280
26 Ga0068863_100310432 3300005841 Bacteria 1531
27 Ga0068858_100419655 3300005842 Bacteria 1287
28 Ga0075363_100064638 3300006048 Bacteria 1977
29 Ga0075432_10001324 3300006058 Bacteria 8011
30 Ga0075362_10035889 3300006177 Bacteria 2166
31 Ga0075362_10088698 3300006177 Bacteria 1433
32 Ga0075367_10017261 3300006178 Bacteria 3958
33 Ga0075367_10130033 3300006178 Bacteria 1556
34 Ga0075366_10001443 3300006195 Bacteria 11839
35 Ga0075366_10075685 3300006195 Bacteria 2008
36 Ga0075366_10204700 3300006195 Bacteria 1201
37 Ga0075366_10276684 3300006195 Bacteria 1026
38 Ga0075370_10156137 3300006353 Bacteria 1338
39 Ga0075370_10426647 3300006353 Bacteria 797
40 Ga0099823_1008958 3300006944 Bacteria 10158
41 Ga0079104_1002213 3300006946 Bacteria 10920
42 Ga0105240_10180017 3300009093 Bacteria 2495
43 Ga0105245_10184568 3300009098 Bacteria 1995
44 Ga0114129_10542631 3300009147 Bacteria 1513
45 Ga0157319_1000009 3300012497 Bacteria 227971
46 Ga0157370_10259311 3300013104 Bacteria 1607
47 Ga0157378_10618869 3300013297 Bacteria 1096
48 Ga0157375_10309934 3300013308 Bacteria 1743
49 Ga0163163_10845053 3300014325 Bacteria 979
50 Ga0209673_1004194 3300025273 Bacteria 7867
51 Ga0209025_1001576 3300025294 Bacteria 28831
52 Ga0209050_1001826 3300025298 Bacteria 20724
53 Ga0209256_1000785 3300025299 Bacteria 40983
54 Ga0209256_1003256 3300025299 Bacteria 11678
55 Ga0209051_1019158 3300025303 Bacteria 2998
56 Ga0209257_1002975 3300025304 Bacteria 15468
57 Ga0209257_1004389 3300025304 Bacteria 10964
58 Ga0207647_10141039 3300025904 Bacteria 1412
59 Ga0207645_10003201 3300025907 Bacteria 12518
60 Ga0207643_10104282 3300025908 Bacteria 1665
61 Ga0207695_10129353 3300025913 Bacteria 2483
62 Ga0207649_10015727 3300025920 Bacteria 4252
63 Ga0207650_10079825 3300025925 Bacteria 2479
64 Ga0207659_10148061 3300025926 Bacteria 1830
65 Ga0207687_10086053 3300025927 Bacteria 2282
66 Ga0207690_10178505 3300025932 Bacteria 1597
67 Ga0207706_10083590 3300025933 Bacteria 2806
68 Ga0207704_10256730 3300025938 Bacteria 1315
69 Ga0207691_10040854 3300025940 Bacteria 4285
70 Ga0207689_10021026 3300025942 Bacteria 5485
71 Ga0207679_10000421 3300025945 Bacteria 30283
72 Ga0207651_10051186 3300025960 Bacteria 2808
73 Ga0207703_10393979 3300026035 Bacteria 1284
74 Ga0207641_10039011 3300026088 Bacteria 3972
75 Ga0207648_10006867 3300026089 Bacteria 11283
76 Ga0207676_10082875 3300026095 Bacteria 2610
77 Ga0207674_10378912 3300026116 Bacteria 1368
78 Ga0209973_1000424 3300027252 Bacteria 3166
79 Ga0209389_1002311 3300027296 Bacteria 14485
80 Ga0268266_10068668 3300028379 Bacteria 3069
81 Ga0307517_10003059 3300028786 Bacteria 26433
82 Ga0307515_10000022 3300028794 Bacteria 404064
83 Ga0307515_10000191 3300028794 Bacteria 149201
84 Ga0307515_10000458 3300028794 Bacteria 97523
85 Ga0307515_10009334 3300028794 Bacteria 18983
86 Ga0307515_10334758 3300028794 Bacteria 1170
87 Ga0307515_10380038 3300028794 Bacteria 1045
88 Ga0307513_10092983 3300031456 Bacteria 3067
89 Ga0307509_10014934 3300031507 Bacteria 9096
90 Ga0307509_10071757 3300031507 Bacteria 3610
91 Ga0307509_10225871 3300031507 Bacteria 1680
92 Ga0307408_100000095 3300031548 Bacteria 97142
93 Ga0307408_100286731 3300031548 Bacteria 1373
94 Ga0307508_10008079 3300031616 Bacteria 9756
95 Ga0307514_10000828 3300031649 Bacteria 49982
96 Ga0307516_10001526 3300031730 Bacteria 31910
97 Ga0307516_10240432 3300031730 Bacteria 1509
98 Ga0307406_10000935 3300031901 Bacteria 16322
99 Ga0307416_100026859 3300032002 Bacteria 4251
100 Ga0307414_10140858 3300032004 Bacteria 1888
101 Ga0307510_10012778 3300033180 Bacteria 9966
102 Ga0373950_0039428 3300034818 Bacteria 900
103 Ga0373946_0266483 3300035171 Bacteria 839
104 Ga0373962_0072573 3300035242 Bacteria 1031
105 Ga0373931_0009300 3300035691 Bacteria 4694
106 Ga0395899_0029886 3300037312 Bacteria 4100
107 Ga0395900_0234905 3300037418 Bacteria 1842
108 Ga0395898_0041972 3300037466 Bacteria 4516
109 Ga0395905_0000132 3300037471 Bacteria 123636
110 Ga0395905_0017699 3300037471 Bacteria 6766
111 Ga0395905_0045239 3300037471 Bacteria 4128
112 Ga0395905_0106588 3300037471 Bacteria 2631
113 Ga0395901_0115567 3300038443 Bacteria 2818
114 Ga0395901_0484716 3300038443 Bacteria 1261
115 Ga0439449_0069794 3300042007 Bacteria 1295
116 Ga0439454_019807 3300042011 Bacteria 981
117 Ga0466969_0012395 3300044656 Bacteria 4497
118 Ga0466972_0009977 3300044658 Bacteria 4769
119 Ga0466965_0058732 3300044683 Bacteria 1918
120 Ga0466961_0016942 3300044693 Bacteria 4682
121 Ga0453684_0032240 3300044712 Bacteria 7340
122 Ga0453684_0285681 3300044712 Bacteria 1880
123 Ga0466970_0069513 3300044765 Bacteria 1893
124 Ga0466960_0107574 3300044901 Bacteria 1444
125 Ga0451576_0017706 3300045051 Bacteria 7829
126 Ga0495606_0158396 3300046507 Bacteria 1323
127 Ga0495597_0003022 3300046542 Bacteria 10144
128 Ga0495634_0344926 3300046642 Bacteria 893
129 Ga0495625_0402236 3300046660 Bacteria 855
130 Ga0495670_0285263 3300046691 Bacteria 883
131 Ga0495686_0103515 3300047472 Bacteria 1715
132 Ga0495686_0183311 3300047472 Bacteria 1212
133 Ga0495626_0158266 3300048091 Bacteria 951
134 Ga0496114_0241290 3300048917 Bacteria 1589
135 Ga0496124_0032833 3300048927 Bacteria 4578
136 Ga0501031_0070015 3300049568 Bacteria 2285
137 Ga0501031_0084522 3300049568 Bacteria 2069
138 Ga0501031_0212517 3300049568 Bacteria 1260
139 Ga0501032_0002055 3300049569 Bacteria 15899
140 Ga0501032_0017196 3300049569 Bacteria 5080
141 Ga0501032_0059132 3300049569 Bacteria 2573
142 Ga0501032_0143855 3300049569 Bacteria 1570
143 Ga0501033_0000377 3300049570 Bacteria 42799
144 Ga0501033_0000692 3300049570 Bacteria 31217
145 Ga0501033_0018253 3300049570 Bacteria 5300
146 Ga0501033_0022456 3300049570 Bacteria 4760
147 Ga0501034_0113913 3300049571 Bacteria 2693
148 Ga0501034_0220404 3300049571 Bacteria 1849
149 Ga0501036_0070484 3300049572 Bacteria 2956
150 Ga0501036_0164670 3300049572 Bacteria 1869
151 Ga0501037_0000198 3300049573 Bacteria 54028
152 Ga0501037_0060692 3300049573 Bacteria 2758
153 Ga0501037_0320201 3300049573 Bacteria 1074
154 Ga0501038_0506776 3300049574 Bacteria 922
155 Ga0501043_0000100 3300049579 Bacteria 79167
156 Ga0501043_0101822 3300049579 Bacteria 2257
157 Ga0501043_0152175 3300049579 Bacteria 1810
158 Ga0501043_0211684 3300049579 Bacteria 1502
159 Ga0501043_0231431 3300049579 Bacteria 1427
160 Ga0501046_0016310 3300049580 Bacteria 6225
161 Ga0501046_0044673 3300049580 Bacteria 3523
162 Ga0501046_0644827 3300049580 Bacteria 749
163 Ga0501047_0022161 3300049581 Bacteria 6104
164 Ga0501047_0064818 3300049581 Bacteria 3523
165 Ga0501047_0137162 3300049581 Bacteria 2326
166 Ga0501047_0214609 3300049581 Bacteria 1781
167 Ga0501047_0280758 3300049581 Bacteria 1510
168 Ga0501067_0073386 3300049583 Bacteria 1896
169 Ga0501067_0223152 3300049583 Bacteria 1049
170 Ga0501068_0164815 3300049584 Bacteria 1397
171 Ga0501069_0000020 3300049585 Bacteria 122595
172 Ga0501069_0043125 3300049585 Bacteria 2496
173 Ga0501069_0043570 3300049585 Bacteria 2484
174 Ga0501069_0101509 3300049585 Bacteria 1633
175 Ga0501069_0110028 3300049585 Bacteria 1568
176 Ga0501070_0000174 3300049586 Bacteria 59663
177 Ga0501070_0003550 3300049586 Bacteria 13489
178 Ga0501070_0004250 3300049586 Bacteria 12312
179 Ga0501070_0033404 3300049586 Bacteria 4305
180 Ga0501070_0250212 3300049586 Bacteria 1450
181 Ga0501071_0030042 3300049587 Bacteria 3841
182 Ga0501071_0054684 3300049587 Bacteria 2880
183 Ga0501071_0652513 3300049587 Bacteria 810
184 Ga0501072_0654427 3300049588 Bacteria 827
185 Ga0501073_0035948 3300049589 Bacteria 3520
186 Ga0501074_0000015 3300049590 Bacteria 79939
187 Ga0501074_0044777 3300049590 Bacteria 3202
188 Ga0501080_0000219 3300049742 Bacteria 42649
189 Ga0501080_0001476 3300049742 Bacteria 19812
190 Ga0501080_0007504 3300049742 Bacteria 9848
191 Ga0501080_0042117 3300049742 Bacteria 4254
192 Ga0501080_0174465 3300049742 Bacteria 1981
193 Ga0501083_0000317 3300049744 Bacteria 30564
194 Ga0501083_0076591 3300049744 Bacteria 2220
195 Ga0501035_0000070 3300049822 Bacteria 127442
196 Ga0501035_0000157 3300049822 Bacteria 83835
197 Ga0501035_0002504 3300049822 Bacteria 17954
198 Ga0501035_0006779 3300049822 Bacteria 10704
199 Ga0501035_0045520 3300049822 Bacteria 3948
200 Ga0501035_0066570 3300049822 Bacteria 3197
201 Ga0501035_0138006 3300049822 Bacteria 2121
202 Ga0501044_0000037 3300049823 Bacteria 161924
203 Ga0501044_0007484 3300049823 Bacteria 12008
204 Ga0501044_0023256 3300049823 Bacteria 6594
205 Ga0501044_0025378 3300049823 Bacteria 6282
206 Ga0501044_0080155 3300049823 Bacteria 3307
207 Ga0501044_0183179 3300049823 Bacteria 2060
208 nmdc:mga03683_125157_c1 3300050489 Bacteria 1146
209 nmdc:mga0k408_130282_c1 3300050493 Bacteria 1493
210 nmdc:mga0k408_177799_c1 3300050493 Bacteria 1269
211 nmdc:mga0k408_231170_c1 3300050493 Bacteria 1104
212 nmdc:mga0k408_39060_c1 3300050493 Bacteria 2726
213 nmdc:mga07m45_229486_c1 3300050496 Bacteria 1080
214 nmdc:mga07m45_31401_c1 3300050496 Bacteria 1586
215 nmdc:mga05p37_438616_c1 3300050507 Bacteria 1515
216 Ga0500578_0031406 3300053086 Bacteria 3413
217 Ga0500618_000028 3300053125 Bacteria 140440
218 Ga0500618_000184 3300053125 Bacteria 51349
219 Ga0500634_0003845 3300053161 Bacteria 6799
220 Ga0500645_006512 3300053730 Bacteria 4154
221 Ga0501084_0361061 3300054114 Bacteria 1227
222 Ga0501082_0011273 3300060353 Bacteria 7685
223 Ga0501082_0412964 3300060353 Bacteria 1178

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300006048 Ga0075363_100064638 Ga0075363_1000646382 192
2 3300048091 Ga0495626_0158266 Ga0495626_0158266_17_649 210
3 3300025273 Ga0209673_1004194 Ga0209673_10041946 214
4 3300025298 Ga0209050_1001826 Ga0209050_100182613 214
5 3300025303 Ga0209051_1019158 Ga0209051_10191582 214
6 3300025304 Ga0209257_1002975 Ga0209257_10029758 214
7 3300006195 Ga0075366_10204700 Ga0075366_102047002 215
8 3300050493 nmdc:mga0k408_231170_c1 nmdc:mga0k408_231170_c1_297_980 215
9 3300006195 Ga0075366_10276684 Ga0075366_102766842 216
10 3300027252 Ga0209973_1000424 Ga0209973_10004244 217
11 3300048927 Ga0496124_0032833 Ga0496124_0032833_1299_2009 217
12 iso_pu_bacteria 2513237088 2513595284 217
13 iso_pu_bacteria 2558860983 2561467497 217
14 iso_pu_bacteria 2996887358 2996887394 217
15 iso_pu_bacteria 8005258706 8005261955 217
16 iso_pu_bacteria 8005321885 8005321921 217
17 iso_pu_bacteria 8055431914 8055432356 217
18 3300003323 rootH1_10020880 rootH1_100208805 218
19 3300006944 Ga0099823_1008958 Ga0099823_10089585 218
20 3300025299 Ga0209256_1003256 Ga0209256_10032566 218
21 3300027296 Ga0209389_1002311 Ga0209389_10023119 218
22 iso_pu_bacteria 2511231026 2511387939 218
23 3300032004 Ga0307414_10140858 Ga0307414_101408582 219
24 3300004625 Ga0055543_1002292 Ga0055543_10022926 220
25 3300005262 Ga0065165_1000600 Ga0065165_10006006 220
26 3300028794 Ga0307515_10000022 Ga0307515_10000022289 220
27 iso_pu_bacteria 2881101125 2881101680 220
28 3300005338 Ga0068868_100053983 Ga0068868_1000539832 221
29 3300005367 Ga0070667_100612198 Ga0070667_1006121981 221
30 3300005548 Ga0070665_100030582 Ga0070665_1000305822 221
31 3300005618 Ga0068864_100010936 Ga0068864_1000109367 221
32 3300005841 Ga0068863_100143865 Ga0068863_1001438652 221
33 3300005841 Ga0068863_100310432 Ga0068863_1003104322 221
34 3300005842 Ga0068858_100419655 Ga0068858_1004196551 221
35 3300006178 Ga0075367_10017261 Ga0075367_100172612 221
36 3300006195 Ga0075366_10001443 Ga0075366_100014436 221
37 3300009098 Ga0105245_10184568 Ga0105245_101845682 221
38 3300013297 Ga0157378_10618869 Ga0157378_106188692 221
39 3300013308 Ga0157375_10309934 Ga0157375_103099342 221
40 3300014325 Ga0163163_10845053 Ga0163163_108450531 221
41 3300025294 Ga0209025_1001576 Ga0209025_100157622 221
42 3300025927 Ga0207687_10086053 Ga0207687_100860532 221
43 3300026035 Ga0207703_10393979 Ga0207703_103939792 221
44 3300026088 Ga0207641_10039011 Ga0207641_100390115 221
45 3300026095 Ga0207676_10082875 Ga0207676_100828752 221
46 3300028379 Ga0268266_10068668 Ga0268266_100686682 221
47 3300028786 Ga0307517_10003059 Ga0307517_1000305917 221
48 3300028794 Ga0307515_10009334 Ga0307515_1000933416 221
49 3300031507 Ga0307509_10014934 Ga0307509_100149347 221
50 3300031616 Ga0307508_10008079 Ga0307508_100080798 221
51 3300031730 Ga0307516_10240432 Ga0307516_102404322 221
52 3300033180 Ga0307510_10012778 Ga0307510_100127787 221
53 3300034818 Ga0373950_0039428 Ga0373950_0039428_33_698 221
54 3300035171 Ga0373946_0266483 Ga0373946_0266483_16_681 221
55 3300035242 Ga0373962_0072573 Ga0373962_0072573_219_884 221
56 3300035691 Ga0373931_0009300 Ga0373931_0009300_652_1317 221
57 3300037418 Ga0395900_0234905 Ga0395900_0234905_790_1470 221
58 3300046642 Ga0495634_0344926 Ga0495634_0344926_77_790 221
59 3300047472 Ga0495686_0103515 Ga0495686_0103515_523_1224 221
60 3300049570 Ga0501033_0000692 Ga0501033_0000692_27259_27924 221
61 3300049571 Ga0501034_0220404 Ga0501034_0220404_127_792 221
62 3300049822 Ga0501035_0000157 Ga0501035_0000157_28696_29361 221
63 3300050493 nmdc:mga0k408_39060_c1 nmdc:mga0k408_39060_c1_1469_2137 221
64 3300053125 Ga0500618_000028 Ga0500618_000028_118309_119010 221
65 3300053125 Ga0500618_000184 Ga0500618_000184_47985_48659 221
66 3300006946 Ga0079104_1002213 Ga0079104_10022135 222
67 3300009093 Ga0105240_10180017 Ga0105240_101800173 222
68 3300013104 Ga0157370_10259311 Ga0157370_102593112 222
69 3300025904 Ga0207647_10141039 Ga0207647_101410392 222
70 3300025913 Ga0207695_10129353 Ga0207695_101293532 222
71 3300025932 Ga0207690_10178505 Ga0207690_101785052 222
72 3300026116 Ga0207674_10378912 Ga0207674_103789122 222
73 3300028794 Ga0307515_10000191 Ga0307515_1000019169 222
74 3300038443 Ga0395901_0484716 Ga0395901_0484716_104_772 222
75 3300042007 Ga0439449_0069794 Ga0439449_0069794_118_786 222
76 3300044656 Ga0466969_0012395 Ga0466969_0012395_2425_3096 222
77 3300044658 Ga0466972_0009977 Ga0466972_0009977_1725_2402 222
78 3300044683 Ga0466965_0058732 Ga0466965_0058732_878_1555 222
79 3300044693 Ga0466961_0016942 Ga0466961_0016942_3495_4166 222
80 3300044765 Ga0466970_0069513 Ga0466970_0069513_215_892 222
81 3300044901 Ga0466960_0107574 Ga0466960_0107574_466_1143 222
82 3300046660 Ga0495625_0402236 Ga0495625_0402236_11_679 222
83 3300049568 Ga0501031_0070015 Ga0501031_0070015_722_1390 222
84 3300049568 Ga0501031_0084522 Ga0501031_0084522_26_694 222
85 3300049568 Ga0501031_0212517 Ga0501031_0212517_89_757 222
86 3300049569 Ga0501032_0002055 Ga0501032_0002055_6638_7306 222
87 3300049569 Ga0501032_0017196 Ga0501032_0017196_52_720 222
88 3300049569 Ga0501032_0059132 Ga0501032_0059132_689_1357 222
89 3300049569 Ga0501032_0143855 Ga0501032_0143855_191_859 222
90 3300049570 Ga0501033_0000377 Ga0501033_0000377_7541_8209 222
91 3300049570 Ga0501033_0018253 Ga0501033_0018253_484_1152 222
92 3300049570 Ga0501033_0022456 Ga0501033_0022456_3459_4127 222
93 3300049572 Ga0501036_0070484 Ga0501036_0070484_1536_2204 222
94 3300049573 Ga0501037_0000198 Ga0501037_0000198_31355_32023 222
95 3300049573 Ga0501037_0060692 Ga0501037_0060692_676_1344 222
96 3300049574 Ga0501038_0506776 Ga0501038_0506776_214_882 222
97 3300049579 Ga0501043_0000100 Ga0501043_0000100_62462_63130 222
98 3300049579 Ga0501043_0101822 Ga0501043_0101822_382_1050 222
99 3300049579 Ga0501043_0211684 Ga0501043_0211684_272_940 222
100 3300049579 Ga0501043_0231431 Ga0501043_0231431_288_959 222
101 3300049580 Ga0501046_0044673 Ga0501046_0044673_1458_2126 222
102 3300049580 Ga0501046_0644827 Ga0501046_0644827_31_699 222
103 3300049581 Ga0501047_0022161 Ga0501047_0022161_1583_2251 222
104 3300049581 Ga0501047_0064818 Ga0501047_0064818_1170_1838 222
105 3300049581 Ga0501047_0214609 Ga0501047_0214609_549_1217 222
106 3300049581 Ga0501047_0280758 Ga0501047_0280758_201_869 222
107 3300049583 Ga0501067_0073386 Ga0501067_0073386_997_1665 222
108 3300049583 Ga0501067_0223152 Ga0501067_0223152_201_869 222
109 3300049584 Ga0501068_0164815 Ga0501068_0164815_129_797 222
110 3300049585 Ga0501069_0000020 Ga0501069_0000020_44933_45601 222
111 3300049585 Ga0501069_0043125 Ga0501069_0043125_253_921 222
112 3300049585 Ga0501069_0043570 Ga0501069_0043570_589_1257 222
113 3300049585 Ga0501069_0101509 Ga0501069_0101509_239_907 222
114 3300049585 Ga0501069_0110028 Ga0501069_0110028_347_1015 222
115 3300049586 Ga0501070_0000174 Ga0501070_0000174_8519_9187 222
116 3300049586 Ga0501070_0003550 Ga0501070_0003550_9722_10390 222
117 3300049586 Ga0501070_0004250 Ga0501070_0004250_4810_5478 222
118 3300049586 Ga0501070_0033404 Ga0501070_0033404_2582_3250 222
119 3300049586 Ga0501070_0250212 Ga0501070_0250212_251_919 222
120 3300049587 Ga0501071_0030042 Ga0501071_0030042_2377_3045 222
121 3300049587 Ga0501071_0054684 Ga0501071_0054684_2078_2746 222
122 3300049587 Ga0501071_0652513 Ga0501071_0652513_65_733 222
123 3300049588 Ga0501072_0654427 Ga0501072_0654427_67_735 222
124 3300049589 Ga0501073_0035948 Ga0501073_0035948_1096_1764 222
125 3300049590 Ga0501074_0000015 Ga0501074_0000015_47088_47756 222
126 3300049590 Ga0501074_0044777 Ga0501074_0044777_1024_1692 222
127 3300049742 Ga0501080_0000219 Ga0501080_0000219_6525_7193 222
128 3300049742 Ga0501080_0001476 Ga0501080_0001476_13041_13709 222
129 3300049742 Ga0501080_0007504 Ga0501080_0007504_1330_1998 222
130 3300049742 Ga0501080_0042117 Ga0501080_0042117_2193_2861 222
131 3300049744 Ga0501083_0000317 Ga0501083_0000317_6990_7658 222
132 3300049744 Ga0501083_0076591 Ga0501083_0076591_1420_2088 222
133 3300049822 Ga0501035_0000070 Ga0501035_0000070_76995_77663 222
134 3300049822 Ga0501035_0002504 Ga0501035_0002504_13344_14012 222
135 3300049822 Ga0501035_0006779 Ga0501035_0006779_6977_7645 222
136 3300049822 Ga0501035_0066570 Ga0501035_0066570_1458_2126 222
137 3300049822 Ga0501035_0138006 Ga0501035_0138006_714_1382 222
138 3300049823 Ga0501044_0000037 Ga0501044_0000037_69643_70311 222
139 3300049823 Ga0501044_0007484 Ga0501044_0007484_7909_8577 222
140 3300049823 Ga0501044_0023256 Ga0501044_0023256_3933_4601 222
141 3300049823 Ga0501044_0025378 Ga0501044_0025378_848_1516 222
142 3300049823 Ga0501044_0080155 Ga0501044_0080155_2006_2674 222
143 3300050493 nmdc:mga0k408_177799_c1 nmdc:mga0k408_177799_c1_455_1123 222
144 3300054114 Ga0501084_0361061 Ga0501084_0361061_522_1190 222
145 3300060353 Ga0501082_0011273 Ga0501082_0011273_3405_4073 222
146 3300060353 Ga0501082_0412964 Ga0501082_0412964_95_763 222
147 iso_pu_bacteria 2643221654 2644304539 222
148 3300005344 Ga0070661_100000229 Ga0070661_10000022933 223
149 3300005564 Ga0070664_100001192 Ga0070664_1000011928 223
150 3300006177 Ga0075362_10088698 Ga0075362_100886982 223
151 3300009147 Ga0114129_10542631 Ga0114129_105426312 223
152 3300025920 Ga0207649_10015727 Ga0207649_100157273 223
153 3300025945 Ga0207679_10000421 Ga0207679_1000042121 223
154 3300031507 Ga0307509_10071757 Ga0307509_100717571 223
155 3300031507 Ga0307509_10225871 Ga0307509_102258712 223
156 3300032002 Ga0307416_100026859 Ga0307416_1000268593 223
157 3300044712 Ga0453684_0285681 Ga0453684_0285681_498_1220 223
158 3300045051 Ga0451576_0017706 Ga0451576_0017706_5275_5997 223
159 3300050489 nmdc:mga03683_125157_c1 nmdc:mga03683_125157_c1_141_812 223
160 3300050507 nmdc:mga05p37_438616_c1 nmdc:mga05p37_438616_c1_468_1142 223
161 3300037471 Ga0395905_0000132 Ga0395905_0000132_2063_2737 224
162 3300044712 Ga0453684_0032240 Ga0453684_0032240_496_1173 224
163 3300049571 Ga0501034_0113913 Ga0501034_0113913_467_1141 224
164 3300049572 Ga0501036_0164670 Ga0501036_0164670_984_1658 224
165 3300049573 Ga0501037_0320201 Ga0501037_0320201_149_823 224
166 3300049579 Ga0501043_0152175 Ga0501043_0152175_749_1423 224
167 3300049580 Ga0501046_0016310 Ga0501046_0016310_5167_5841 224
168 3300049581 Ga0501047_0137162 Ga0501047_0137162_1296_1970 224
169 3300049742 Ga0501080_0174465 Ga0501080_0174465_909_1583 224
170 3300049822 Ga0501035_0045520 Ga0501035_0045520_2887_3561 224
171 3300049823 Ga0501044_0183179 Ga0501044_0183179_778_1452 224
172 iso_pu_bacteria 2894023352 2894026443 224
173 3300003794 Ga0055531_10016063 Ga0055531_100160634 225
174 3300005328 Ga0070676_10006410 Ga0070676_100064104 225
175 3300005331 Ga0070670_100036519 Ga0070670_1000365195 225
176 3300005334 Ga0068869_100046076 Ga0068869_1000460764 225
177 3300005338 Ga0068868_100054535 Ga0068868_1000545352 225
178 3300005354 Ga0070675_100082118 Ga0070675_1000821182 225
179 3300005355 Ga0070671_100037296 Ga0070671_1000372962 225
180 3300005364 Ga0070673_100023887 Ga0070673_1000238875 225
181 3300005457 Ga0070662_100083617 Ga0070662_1000836172 225
182 3300005459 Ga0068867_100201124 Ga0068867_1002011242 225
183 3300005543 Ga0070672_100026715 Ga0070672_1000267152 225
184 3300006177 Ga0075362_10035889 Ga0075362_100358892 225
185 3300006178 Ga0075367_10130033 Ga0075367_101300332 225
186 3300006195 Ga0075366_10075685 Ga0075366_100756852 225
187 3300006353 Ga0075370_10156137 Ga0075370_101561371 225
188 3300006353 Ga0075370_10426647 Ga0075370_104266471 225
189 3300012497 Ga0157319_1000009 Ga0157319_1000009190 225
190 3300025304 Ga0209257_1004389 Ga0209257_10043895 225
191 3300025907 Ga0207645_10003201 Ga0207645_100032016 225
192 3300025908 Ga0207643_10104282 Ga0207643_101042822 225
193 3300025925 Ga0207650_10079825 Ga0207650_100798252 225
194 3300025926 Ga0207659_10148061 Ga0207659_101480612 225
195 3300025933 Ga0207706_10083590 Ga0207706_100835902 225
196 3300025938 Ga0207704_10256730 Ga0207704_102567302 225
197 3300025940 Ga0207691_10040854 Ga0207691_100408542 225
198 3300025942 Ga0207689_10021026 Ga0207689_100210265 225
199 3300025960 Ga0207651_10051186 Ga0207651_100511862 225
200 3300026089 Ga0207648_10006867 Ga0207648_100068679 225
201 3300037312 Ga0395899_0029886 Ga0395899_0029886_1049_1726 225
202 3300037466 Ga0395898_0041972 Ga0395898_0041972_403_1080 225
203 3300037471 Ga0395905_0045239 Ga0395905_0045239_755_1432 225
204 3300037471 Ga0395905_0106588 Ga0395905_0106588_82_762 225
205 3300038443 Ga0395901_0115567 Ga0395901_0115567_415_1092 225
206 3300048917 Ga0496114_0241290 Ga0496114_0241290_158_835 225
207 3300050493 nmdc:mga0k408_130282_c1 nmdc:mga0k408_130282_c1_588_1265 225
208 3300050496 nmdc:mga07m45_229486_c1 nmdc:mga07m45_229486_c1_300_977 225
209 3300028794 Ga0307515_10380038 Ga0307515_103800382 226
210 3300037471 Ga0395905_0017699 Ga0395905_0017699_5597_6280 226
211 3300046542 Ga0495597_0003022 Ga0495597_0003022_2397_3077 226
212 3300031548 Ga0307408_100286731 Ga0307408_1002867312 227
213 3300046691 Ga0495670_0285263 Ga0495670_0285263_29_712 227
214 iso_pu_bacteria 2643221570 2643867492 227
215 iso_pu_bacteria 2643221596 2643991275 227
216 iso_pu_bacteria 2643221652 2644295066 227
217 iso_pu_bacteria 2990710928 2990713183 227
218 3300031548 Ga0307408_100000095 Ga0307408_10000009521 228
219 3300031730 Ga0307516_10001526 Ga0307516_1000152627 228
220 3300031901 Ga0307406_10000935 Ga0307406_100009357 228
221 3300053161 Ga0500634_0003845 Ga0500634_0003845_358_1047 228
222 iso_pu_bacteria 2547132374 2548498211 228
223 iso_pu_bacteria 2643221609 2644058616 228
224 iso_pu_bacteria 2643221611 2644070820 228
225 iso_pu_bacteria 2643221717 2644648744 228
226 iso_pu_bacteria 2738543012 2739244084 228
227 iso_pu_bacteria 2816332133 2816472409 228
228 3300046507 Ga0495606_0158396 Ga0495606_0158396_265_954 229
229 3300047472 Ga0495686_0183311 Ga0495686_0183311_480_1169 229
230 3300053086 Ga0500578_0031406 Ga0500578_0031406_2307_2996 229
231 3300053730 Ga0500645_006512 Ga0500645_006512_583_1272 229
232 3300003316 rootH1_10026655 rootH1_100266555 230
233 3300003322 rootL2_10014134 rootL2_100141347 230
234 3300003323 rootH1_10020879 rootH1_100208794 230
235 3300003775 Ga0055524_1003257 Ga0055524_10032575 230
236 3300006058 Ga0075432_10001324 Ga0075432_100013245 230
237 3300025299 Ga0209256_1000785 Ga0209256_100078519 230
238 3300028794 Ga0307515_10000458 Ga0307515_1000045881 230
239 3300028794 Ga0307515_10334758 Ga0307515_103347582 230
240 3300031456 Ga0307513_10092983 Ga0307513_100929832 230
241 3300031649 Ga0307514_10000828 Ga0307514_1000082841 230
242 3300042011 Ga0439454_019807 Ga0439454_019807_154_846 230
243 3300050496 nmdc:mga07m45_31401_c1 nmdc:mga07m45_31401_c1_544_1236 230

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

42

152

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
8fk2-assembly1.cif.gz_B the n-terminal vicr from streptococcus mutans 0.9624 2 120
5hm6-assembly1.cif.gz_A n-terminal domain of bfmr from acinetobacter baumannii 0.9622 2 118
1zh4-assembly1.cif.gz_A crystal structure of the mg+2/bef3-bound receiver domain of kdp potassium transport system response regulator kdpe 0.9601 2 120
7m0s-assembly1.cif.gz_B n-terminal domain of pmra from acinetobacter baumannii 0.9599 1 120
2a9r-assembly1.cif.gz_A-2 rr02-rec phosphate in the active site 0.9577 1 118
ID Description Score Start End Superfamily
af_O07776_22_102_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9782 1 79 3.40.50.2300
af_Q2FXN6_3_86_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9701 1 82 3.40.50.2300
af_Q06065_2_134_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9686 2 122 3.40.50.2300
af_P52076_1_80_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9666 1 79 3.40.50.2300
af_P69228_9_89_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.965 2 77 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A227J874-F1-model_v4 DNA-binding response regulator 0.9665 2 111 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A0S6VSY2-F1-model_v4 Type IV pilus assembly protein PilB 0.9644 2 122 GO:0000160
GO:0005524
GO:0005886
GO:0016887
AF-A0A5S9IQL5-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.9636 2 122 GO:0000155
GO:0005524
GO:0005886
AF-A0A5C9CVZ0-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.9632 2 122 GO:0000155
GO:0000156
GO:0007234
GO:0030295
AF-A0A355CD79-F1-model_v4 Response regulator 0.9631 2 122 GO:0000160

Feature Viewer

pLDDT pTM Quality
87.81 0.55 Medium
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Predicted Structure (AlphaFold2)

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