F355240

General Info

Members Datasets Scaffolds Average Seq Length
243 154 489 363

Family's Representative Sequence

Representative Sequence 3300003320|rootH2_10063496|rootH2_100634962
Length 396
Sequence MCLLFLPVLLYYFFGDLCTAAAIMEGETHRKQRKIIHIDMDAFYASVEQRDNPAYRGKAIAVGGSPEGRGGVVATASYEARKFGVRSAMPSKRALQLCPDIIFVRPRFDVYKEVSRRIREIFSRHTDIIEPLSLDEAYLDVTEDKQQIGSAIEIAKLIKQAIKEELQLTASAGVSVNKFVAKIASDLNKPDGLTFIGPSSIESFMEKLPVEKFHGVGKVTADKMKRMGLHTGADLKRLTENDLKQHFGKVGAFYYRIVRGIDEREVQPHRETKSLGAEDTFPFDLTKTEEMYAELEKIAVTVCERLKRYGLKGRTITLKIKYSDFRQITRNQSFPFPVGDFDKILETAKQLLLATEPEDKPVRLLGISLSNFGEVIPVAGRSGNGAQLSLFDEDQV

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
8 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
9 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
10 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
11 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
12 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
13 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
14 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
17 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
18 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
23 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
24 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
25 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
26 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
27 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
33 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
34 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
35 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
38 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
39 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
46 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
47 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
48 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
49 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
50 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
51 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
52 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
53 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
54 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
55 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
57 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
59 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
60 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
81 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
83 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
84 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
85 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
86 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
87 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
88 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
89 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
90 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
91 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
92 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
93 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
94 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
95 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
96 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
97 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
98 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
99 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
100 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
101 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
102 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
103 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
104 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
105 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
106 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
107 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
108 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
109 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
110 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
111 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
112 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
113 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
114 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
115 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
116 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
117 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
118 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
119 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
120 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
121 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
122 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
123 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
124 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
125 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
126 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
127 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
128 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
129 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
130 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
131 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
132 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
133 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
134 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
135 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
136 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
137 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
138 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
139 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
140 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
141 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
142 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
143 2738541283 Pedobacter sp. OK701 Isolate Unclassified
144 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
145 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
146 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
147 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
148 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
149 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
150 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
151 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
152 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
153 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
154 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.06
Metatranscriptomes 0
Isolates 4.94

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.93
Nodule 0
Rhizoplane 0
Rhizosphere 72.84
Stem 0
Stem Tuber 0
Unclassified 2.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10063496 3300003320 Bacteria 2222
2 JGI25162J39368_1000055 3300002737 Bacteria 147236
3 JGI25406J46586_10035913 3300003203 Bacteria 1804
4 rootH1_10000566 3300003316 Bacteria 33162
5 rootH1_10000566 3300003323 Bacteria 205679
6 rootH1_10000727 3300003316 Bacteria 46114
7 rootH1_10000727 3300003323 Bacteria 5388
8 rootH2_10000644 3300003320 Bacteria 89718
9 rootH2_10001891 3300003320 Bacteria 464318
10 rootH2_10135390 3300003320 Bacteria 4719
11 rootL2_10005126 3300003322 Bacteria 52150
12 rootL2_10011827 3300003322 Bacteria 19100
13 rootL2_10019262 3300003322 Bacteria 10344
14 rootL2_10051491 3300003322 Bacteria 9429
15 rootL2_10105502 3300003322 Bacteria 5268
16 rootL2_10174010 3300003322 Bacteria 7969
17 rootL2_10212476 3300003322 Bacteria 3555
18 rootH1_10003290 3300003316 Bacteria 20300
19 rootH1_10003290 3300003323 Bacteria 63047
20 rootH1_10022911 3300003323 Bacteria 25134
21 rootH1_10066614 3300003323 Bacteria 6008
22 rootH1_10254450 3300003323 Bacteria 1753
23 JGI25160J50197_1000975 3300003354 Bacteria 14909
24 JGI25160J50197_1012867 3300003354 Bacteria 2881
25 Ga0055531_10000026 3300003794 Bacteria 160364
26 Ga0065165_1001114 3300005262 Bacteria 31744
27 Ga0065704_10075739 3300005289 Bacteria 5442
28 Ga0065704_10131030 3300005289 Bacteria 1629
29 Ga0070658_10000026 3300005327 Bacteria 171716
30 Ga0070676_10025411 3300005328 Bacteria 3348
31 Ga0068868_100030994 3300005338 Bacteria 4104
32 Ga0070691_10017323 3300005341 Bacteria 3315
33 Ga0070673_100002401 3300005364 Bacteria 11402
34 Ga0070663_100024216 3300005455 Bacteria 4082
35 Ga0070662_100000153 3300005457 Bacteria 39715
36 Ga0068867_100000990 3300005459 Bacteria 19370
37 Ga0068853_100002933 3300005539 Bacteria 12973
38 Ga0068853_100033736 3300005539 Bacteria 4342
39 Ga0070665_100000020 3300005548 Bacteria 389687
40 Ga0068855_100042715 3300005563 Bacteria 5372
41 Ga0068855_100045307 3300005563 Bacteria 5202
42 Ga0068854_100011687 3300005578 Bacteria 5726
43 Ga0068854_100054076 3300005578 Bacteria 2886
44 Ga0068852_100007484 3300005616 Bacteria 7971
45 Ga0068859_100244416 3300005617 Bacteria 1884
46 Ga0081539_10023439 3300005985 Bacteria 4044
47 Ga0075366_10019037 3300006195 Bacteria 3968
48 Ga0068871_100014781 3300006358 Bacteria 5828
49 Ga0097620_100244423 3300006931 Bacteria 1884
50 Ga0105240_10000078 3300009093 Bacteria 196646
51 Ga0105240_10031574 3300009093 Bacteria 6866
52 Ga0105240_10100939 3300009093 Bacteria 3511
53 Ga0105240_10117986 3300009093 Bacteria 3199
54 Ga0105240_10490334 3300009093 Bacteria 1368
55 Ga0111539_10026290 3300009094 Bacteria 7118
56 Ga0114129_10005656 3300009147 Bacteria 17691
57 Ga0105243_10000012 3300009148 Bacteria 300885
58 Ga0105241_10009803 3300009174 Bacteria 7039
59 Ga0105241_10011571 3300009174 Bacteria 6470
60 Ga0105241_10098504 3300009174 Bacteria 2320
61 Ga0105242_10144997 3300009176 Bacteria 2065
62 Ga0105237_10000702 3300009545 Bacteria 46425
63 Ga0105237_10006536 3300009545 Bacteria 12897
64 Ga0105237_10020728 3300009545 Bacteria 6770
65 Ga0105237_10075290 3300009545 Bacteria 3367
66 Ga0105237_10121909 3300009545 Bacteria 2602
67 Ga0105238_10209630 3300009551 Unclassified 1924
68 Ga0105239_10000764 3300010375 Bacteria 45433
69 Ga0105239_10001032 3300010375 Bacteria 38819
70 Ga0105239_10001354 3300010375 Bacteria 32956
71 Ga0105239_10033671 3300010375 Bacteria 5626
72 Ga0105239_10097438 3300010375 Bacteria 3250
73 Ga0105246_10072867 3300011119 Bacteria 2423
74 Ga0157371_10005799 3300013102 Bacteria 10336
75 Ga0157371_10044647 3300013102 Bacteria 3155
76 Ga0157369_10008102 3300013105 Bacteria 12042
77 Ga0157369_10124846 3300013105 Bacteria 2730
78 Ga0157374_10002533 3300013296 Bacteria 15404
79 Ga0157374_10003205 3300013296 Bacteria 13737
80 Ga0157374_10015600 3300013296 Bacteria 6668
81 Ga0157374_10152886 3300013296 Bacteria 2244
82 Ga0157378_10032030 3300013297 Bacteria 4644
83 Ga0157378_10044014 3300013297 Bacteria 3963
84 Ga0157378_10264475 3300013297 Bacteria 1652
85 Ga0163162_10000256 3300013306 Bacteria 48230
86 Ga0157372_10000042 3300013307 Bacteria 157651
87 Ga0157372_10003739 3300013307 Bacteria 16333
88 Ga0157372_10005097 3300013307 Bacteria 13966
89 Ga0157372_10025031 3300013307 Bacteria 6486
90 Ga0157372_10041603 3300013307 Bacteria 5082
91 Ga0157372_10128453 3300013307 Bacteria 2915
92 Ga0157375_10074825 3300013308 Bacteria 3409
93 Ga0157375_10098409 3300013308 Bacteria 3002
94 Ga0182008_10000335 3300014497 Bacteria 36787
95 Ga0182008_10010976 3300014497 Bacteria 4830
96 Ga0157377_10027220 3300014745 Bacteria 3068
97 Ga0157376_10004720 3300014969 Bacteria 9496
98 Ga0182006_1001927 3300015261 Bacteria 11784
99 Ga0182007_10005611 3300015262 Bacteria 5482
100 Ga0182007_10019128 3300015262 Bacteria 2468
101 Ga0163161_10000405 3300017792 Bacteria 36132
102 Ga0163161_10008720 3300017792 Bacteria 7013
103 Ga0213872_10012742 3300021361 Bacteria 3949
104 Ga0209436_101254 3300025208 Bacteria 9138
105 Ga0209437_100130 3300025233 Bacteria 183731
106 Ga0209258_100161 3300025242 Bacteria 151992
107 Ga0209026_1000383 3300025250 Bacteria 40563
108 Ga0209148_1000161 3300025254 Bacteria 138759
109 Ga0209130_1002690 3300025284 Bacteria 8467
110 Ga0207426_1000019 3300025302 Bacteria 558579
111 Ga0207426_1001341 3300025302 Bacteria 20920
112 Ga0209257_1000004 3300025304 Bacteria 1678347
113 Ga0207647_10000273 3300025904 Bacteria 41974
114 Ga0207647_10003492 3300025904 Bacteria 11786
115 Ga0207645_10001268 3300025907 Bacteria 20776
116 Ga0207705_10000040 3300025909 Bacteria 185735
117 Ga0207654_10001780 3300025911 Bacteria 11193
118 Ga0207654_10053345 3300025911 Bacteria 2334
119 Ga0207695_10000064 3300025913 Bacteria 346010
120 Ga0207695_10003090 3300025913 Bacteria 23836
121 Ga0207695_10027574 3300025913 Bacteria 6322
122 Ga0207671_10000130 3300025914 Bacteria 117434
123 Ga0207671_10003438 3300025914 Bacteria 15800
124 Ga0207671_10003653 3300025914 Bacteria 15191
125 Ga0207671_10005058 3300025914 Bacteria 12315
126 Ga0207671_10015186 3300025914 Bacteria 6047
127 Ga0207660_10194619 3300025917 Bacteria 1581
128 Ga0207706_10001455 3300025933 Bacteria 23670
129 Ga0207709_10000006 3300025935 Bacteria 800946
130 Ga0207704_10000865 3300025938 Bacteria 13433
131 Ga0207667_10028601 3300025949 Bacteria 6053
132 Ga0207667_10043865 3300025949 Bacteria 4744
133 Ga0207640_10155966 3300025981 Bacteria 1683
134 Ga0207677_10048111 3300026023 Bacteria 2869
135 Ga0207639_10010504 3300026041 Bacteria 6413
136 Ga0207678_10039173 3300026067 Bacteria 4113
137 Ga0207702_10000042 3300026078 Bacteria 150673
138 Ga0207702_10332849 3300026078 Bacteria 1449
139 Ga0207648_10000287 3300026089 Bacteria 54959
140 Ga0207674_10062077 3300026116 Bacteria 3774
141 Ga0207698_10021014 3300026142 Bacteria 4508
142 Ga0207428_10037498 3300027907 Bacteria 3943
143 Ga0268266_10000018 3300028379 Bacteria 569141
144 Ga0268266_10078973 3300028379 Bacteria 2864
145 Ga0265336_10019248 3300028666 Bacteria 2204
146 Ga0307517_10035483 3300028786 Bacteria 5643
147 Ga0307515_10000744 3300028794 Bacteria 75412
148 Ga0307515_10056955 3300028794 Bacteria 5666
149 Ga0265338_10021504 3300028800 Bacteria 6724
150 Ga0316181_1216001 3300030744 Bacteria 6359
151 Ga0265327_10000232 3300031251 Bacteria 112743
152 Ga0265316_10005951 3300031344 Bacteria 11744
153 Ga0307509_10299033 3300031507 Bacteria 1359
154 Ga0307508_10000446 3300031616 Bacteria 49383
155 Ga0316576_10220393 3300031727 Bacteria 1427
156 Ga0307414_10052576 3300032004 Bacteria 2835
157 Ga0307414_10070674 3300032004 Bacteria 2514
158 Ga0307510_10003890 3300033180 Bacteria 17505
159 Ga0395899_0000401 3300037312 Bacteria 50789
160 Ga0395899_0007051 3300037312 Bacteria 8697
161 Ga0395900_0000517 3300037418 Bacteria 54614
162 Ga0395905_0000011 3300037471 Bacteria 424563
163 Ga0395901_0003023 3300038443 Bacteria 16957
164 Ga0436361_0684828 3300039447 Bacteria 21305
165 Ga0439448_0002121 3300042005 Bacteria 5341
166 Ga0451577_0012393 3300042876 Bacteria 8008
167 Ga0451577_0026572 3300042876 Bacteria 5242
168 Ga0451577_0046649 3300042876 Bacteria 3876
169 Ga0453683_0000419 3300044673 Bacteria 49343
170 Ga0453683_0002830 3300044673 Bacteria 13174
171 Ga0453683_0028817 3300044673 Bacteria 3513
172 Ga0453683_0081256 3300044673 Unclassified 2030
173 Ga0466966_0000114 3300044684 Bacteria 49928
174 Ga0453684_0000328 3300044712 Bacteria 199181
175 Ga0453684_0002534 3300044712 Bacteria 44015
176 Ga0453684_0005203 3300044712 Bacteria 26128
177 Ga0453684_0007681 3300044712 Bacteria 19722
178 Ga0453684_0026909 3300044712 Bacteria 8283
179 Ga0453684_0092730 3300044712 Bacteria 3722
180 Ga0453684_0096238 3300044712 Bacteria 3638
181 Ga0453684_0496523 3300044712 Bacteria 1352
182 Ga0466957_0000181 3300044842 Bacteria 28481
183 Ga0466959_0000049 3300045049 Bacteria 83496
184 Ga0466959_0019937 3300045049 Bacteria 4937
185 Ga0451576_0000190 3300045051 Bacteria 154484
186 Ga0451576_0005798 3300045051 Bacteria 15358
187 Ga0451576_0065984 3300045051 Unclassified 3768
188 Ga0451576_0322517 3300045051 Unclassified 1617
189 Ga0466958_0012076 3300045836 Bacteria 4882
190 Ga0495650_0000050 3300046471 Bacteria 318894
191 Ga0495596_0052545 3300046500 Bacteria 1595
192 Ga0495606_0000036 3300046507 Bacteria 234596
193 Ga0495606_0012351 3300046507 Bacteria 6859
194 Ga0495610_0002141 3300046512 Bacteria 16801
195 Ga0495648_0012004 3300046524 Bacteria 6492
196 Ga0495633_0000151 3300046558 Bacteria 91565
197 Ga0495633_0018715 3300046558 Bacteria 3514
198 Ga0495625_0000105 3300046660 Bacteria 126078
199 Ga0495661_0002326 3300046665 Bacteria 14650
200 Ga0495661_0005552 3300046665 Bacteria 8946
201 Ga0495649_0000011 3300046694 Bacteria 416695
202 Ga0495672_0070796 3300047320 Bacteria 1975
203 Ga0495687_002127 3300047443 Bacteria 16569
204 Ga0495686_0002234 3300047472 Bacteria 18719
205 Ga0495686_0008489 3300047472 Bacteria 7532
206 Ga0495686_0030468 3300047472 Bacteria 3503
207 Ga0495686_0064498 3300047472 Bacteria 2267
208 Ga0496116_0002186 3300048919 Bacteria 20828
209 Ga0496122_0000765 3300048925 Bacteria 62189
210 Ga0496122_0005656 3300048925 Bacteria 14755
211 Ga0496123_0004748 3300048926 Bacteria 14066
212 Ga0496123_0005845 3300048926 Bacteria 12189
213 Ga0496124_0143834 3300048927 Bacteria 1879
214 Ga0496126_0020796 3300048929 Bacteria 6424
215 Ga0501217_049454 3300049661 Bacteria 1095
216 Ga0501241_000052 3300049758 Bacteria 30859
217 Ga0501035_0061550 3300049822 Bacteria 3341
218 nmdc:mga0k408_5020_c1 3300050493 Bacteria 7008
219 nmdc:mga05p37_1576_c1 3300050507 Bacteria 19968
220 nmdc:mga08y16_40056_c1 3300050511 Bacteria 4913
221 Ga0500644_0000947 3300053088 Bacteria 9133
222 Ga0500583_0059922 3300053092 Unclassified 1793
223 Ga0500569_000356 3300053109 Bacteria 7385
224 Ga0500607_015210 3300053121 Bacteria 4442
225 Ga0500658_0002923 3300053134 Bacteria 6557
226 Ga0500577_0000386 3300053142 Bacteria 11294
227 Ga0500588_0006009 3300053146 Bacteria 2724
228 Ga0500616_0000051 3300053153 Bacteria 296240
229 Ga0500616_0039448 3300053153 Bacteria 2546
230 Ga0500616_0043510 3300053153 Bacteria 2400
231 Ga0500622_0000740 3300053156 Bacteria 28507
232 Ga0500634_0091602 3300053161 Unclassified 1541
233 Ga0500636_0011283 3300053177 Bacteria 5230
234 Ga0500661_001813 3300055283 Bacteria 4030
235 2738759712 2738541283 Bacteria 7222293
236 2819679939 2818991460 Bacteria 7595395
237 2883068102 2883068021 Bacteria 6192739
238 2884794495 2884791551 Bacteria 8511252
239 2896089440 2896085136 Bacteria 6129793
240 2896111546 2896109856 Bacteria 7140722
241 2904780980 2904780799 Bacteria 5840761
242 2919180556 2919177583 Bacteria 5641607
243 2929179956 2929177148 Bacteria 7883697
244 2929245655 2929239360 Bacteria 7745570
245 2945982377 2945977869 Bacteria 7777518
246 2946018235 2946013367 Bacteria 7766675
247 rootH2_10063496
248 JGI25162J39368_1000055
249 JGI25406J46586_10035913
250 rootH1_10000566
251 rootH1_10000727
252 rootH2_10000644
253 rootH2_10001891
254 rootH2_10135390
255 rootL2_10005126
256 rootL2_10011827
257 rootL2_10019262
258 rootL2_10051491
259 rootL2_10105502
260 rootL2_10174010
261 rootL2_10212476
262 rootH1_10003290
263 rootH1_10022911
264 rootH1_10066614
265 rootH1_10254450
266 JGI25160J50197_1000975
267 JGI25160J50197_1012867
268 Ga0055531_10000026
269 Ga0065165_1001114
270 Ga0065704_10075739
271 Ga0065704_10131030
272 Ga0070658_10000026
273 Ga0070676_10025411
274 Ga0068868_100030994
275 Ga0070691_10017323
276 Ga0070673_100002401
277 Ga0070663_100024216
278 Ga0070662_100000153
279 Ga0068867_100000990
280 Ga0068853_100002933
281 Ga0068853_100033736
282 Ga0070665_100000020
283 Ga0068855_100042715
284 Ga0068855_100045307
285 Ga0068854_100011687
286 Ga0068854_100054076
287 Ga0068852_100007484
288 Ga0068859_100244416
289 Ga0081539_10023439
290 Ga0075366_10019037
291 Ga0068871_100014781
292 Ga0097620_100244423
293 Ga0105240_10000078
294 Ga0105240_10031574
295 Ga0105240_10100939
296 Ga0105240_10117986
297 Ga0105240_10490334
298 Ga0111539_10026290
299 Ga0114129_10005656
300 Ga0105243_10000012
301 Ga0105241_10009803
302 Ga0105241_10011571
303 Ga0105241_10098504
304 Ga0105242_10144997
305 Ga0105237_10000702
306 Ga0105237_10006536
307 Ga0105237_10020728
308 Ga0105237_10075290
309 Ga0105237_10121909
310 Ga0105238_10209630
311 Ga0105239_10000764
312 Ga0105239_10001032
313 Ga0105239_10001354
314 Ga0105239_10033671
315 Ga0105239_10097438
316 Ga0105246_10072867
317 Ga0157371_10005799
318 Ga0157371_10044647
319 Ga0157369_10008102
320 Ga0157369_10124846
321 Ga0157374_10002533
322 Ga0157374_10003205
323 Ga0157374_10015600
324 Ga0157374_10152886
325 Ga0157378_10032030
326 Ga0157378_10044014
327 Ga0157378_10264475
328 Ga0163162_10000256
329 Ga0157372_10000042
330 Ga0157372_10003739
331 Ga0157372_10005097
332 Ga0157372_10025031
333 Ga0157372_10041603
334 Ga0157372_10128453
335 Ga0157375_10074825
336 Ga0157375_10098409
337 Ga0182008_10000335
338 Ga0182008_10010976
339 Ga0157377_10027220
340 Ga0157376_10004720
341 Ga0182006_1001927
342 Ga0182007_10005611
343 Ga0182007_10019128
344 Ga0163161_10000405
345 Ga0163161_10008720
346 Ga0213872_10012742
347 Ga0209436_101254
348 Ga0209437_100130
349 Ga0209258_100161
350 Ga0209026_1000383
351 Ga0209148_1000161
352 Ga0209130_1002690
353 Ga0207426_1000019
354 Ga0207426_1001341
355 Ga0209257_1000004
356 Ga0207647_10000273
357 Ga0207647_10003492
358 Ga0207645_10001268
359 Ga0207705_10000040
360 Ga0207654_10001780
361 Ga0207654_10053345
362 Ga0207695_10000064
363 Ga0207695_10003090
364 Ga0207695_10027574
365 Ga0207671_10000130
366 Ga0207671_10003438
367 Ga0207671_10003653
368 Ga0207671_10005058
369 Ga0207671_10015186
370 Ga0207660_10194619
371 Ga0207706_10001455
372 Ga0207709_10000006
373 Ga0207704_10000865
374 Ga0207667_10028601
375 Ga0207667_10043865
376 Ga0207640_10155966
377 Ga0207677_10048111
378 Ga0207639_10010504
379 Ga0207678_10039173
380 Ga0207702_10000042
381 Ga0207702_10332849
382 Ga0207648_10000287
383 Ga0207674_10062077
384 Ga0207698_10021014
385 Ga0207428_10037498
386 Ga0268266_10000018
387 Ga0268266_10078973
388 Ga0265336_10019248
389 Ga0307517_10035483
390 Ga0307515_10000744
391 Ga0307515_10056955
392 Ga0265338_10021504
393 Ga0316181_1216001
394 Ga0265327_10000232
395 Ga0265316_10005951
396 Ga0307509_10299033
397 Ga0307508_10000446
398 Ga0316576_10220393
399 Ga0307414_10052576
400 Ga0307414_10070674
401 Ga0307510_10003890
402 Ga0395899_0000401
403 Ga0395899_0007051
404 Ga0395900_0000517
405 Ga0395905_0000011
406 Ga0395901_0003023
407 Ga0436361_0684828
408 Ga0439448_0002121
409 Ga0451577_0012393
410 Ga0451577_0026572
411 Ga0451577_0046649
412 Ga0453683_0000419
413 Ga0453683_0002830
414 Ga0453683_0028817
415 Ga0453683_0081256
416 Ga0466966_0000114
417 Ga0453684_0000328
418 Ga0453684_0002534
419 Ga0453684_0005203
420 Ga0453684_0007681
421 Ga0453684_0026909
422 Ga0453684_0092730
423 Ga0453684_0096238
424 Ga0453684_0496523
425 Ga0466957_0000181
426 Ga0466959_0000049
427 Ga0466959_0019937
428 Ga0451576_0000190
429 Ga0451576_0005798
430 Ga0451576_0065984
431 Ga0451576_0322517
432 Ga0466958_0012076
433 Ga0495650_0000050
434 Ga0495596_0052545
435 Ga0495606_0000036
436 Ga0495606_0012351
437 Ga0495610_0002141
438 Ga0495648_0012004
439 Ga0495633_0000151
440 Ga0495633_0018715
441 Ga0495625_0000105
442 Ga0495661_0002326
443 Ga0495661_0005552
444 Ga0495649_0000011
445 Ga0495672_0070796
446 Ga0495687_002127
447 Ga0495686_0002234
448 Ga0495686_0008489
449 Ga0495686_0030468
450 Ga0495686_0064498
451 Ga0496116_0002186
452 Ga0496122_0000765
453 Ga0496122_0005656
454 Ga0496123_0004748
455 Ga0496123_0005845
456 Ga0496124_0143834
457 Ga0496126_0020796
458 Ga0501217_049454
459 Ga0501241_000052
460 Ga0501035_0061550
461 nmdc:mga0k408_5020_c1
462 nmdc:mga05p37_1576_c1
463 nmdc:mga08y16_40056_c1
464 Ga0500644_0000947
465 Ga0500583_0059922
466 Ga0500569_000356
467 Ga0500607_015210
468 Ga0500658_0002923
469 Ga0500577_0000386
470 Ga0500588_0006009
471 Ga0500616_0000051
472 Ga0500616_0039448
473 Ga0500616_0043510
474 Ga0500622_0000740
475 Ga0500634_0091602
476 Ga0500636_0011283
477 Ga0500661_001813
478 2738759712
479 2819679939
480 2883068102
481 2884794495
482 2896089440
483 2896111546
484 2904780980
485 2919180556
486 2929179956
487 2929245655
488 2945982377
489 2946018235

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00817

IMS

impB/mucB/samB family

38

186

0.98

PF21999

IMS_HHH_1

DNA polymerase-iota, thumb domain

211

262

0.98

PF11798

IMS_HHH

IMS family HHH motif

198

229

0.94

PF11799

IMS_C

impB/mucB/samB family C-terminal domain

272

390

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1im4-assembly1.cif.gz_A crystal structure of a dinb homolog (dbh) lesion bypass dna polymerase catalytic fragment from sulfolobus solfataricus 0.9196 2 192
4r8u-assembly2.cif.gz_B s-sad structure of dinb-dna complex 0.9143 1 331
4dez-assembly1.cif.gz_A structure of msdpo4 0.9016 1 228
6ig1-assembly1.cif.gz_F dna polymerase iv - dna ternary complex 10 0.9004 1 335
4q45-assembly1.cif.gz_F dna polymerase- damaged dna complex 0.8989 1 335
ID Description Score Start End Superfamily
af_O74944_370_477_3.30.1490.100 Alpha Beta;2-Layer Sandwich;Dna Ligase; domain 1;DNA polymerase, Y-family, little finger domain 0.9717 232 332 3.30.1490.100
4q43A01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.9648 68 166 3.30.70.270
af_P34409_94_147_3.40.1170.60 Alpha Beta;3-Layer(aba) Sandwich;MutS, DNA mismatch repair protein, domain I; 0.959 5 62 3.40.1170.60
af_Q4D5H8_135_177_3.40.1170.60 Alpha Beta;3-Layer(aba) Sandwich;MutS, DNA mismatch repair protein, domain I; 0.9467 14 60 3.40.1170.60
af_Q2FWZ5_4_63_3.40.1170.60 Alpha Beta;3-Layer(aba) Sandwich;MutS, DNA mismatch repair protein, domain I; 0.9449 5 64 3.40.1170.60
ID Description Score Start End GO Terms
AF-A3WZ00-F1-model_v4 DNA-directed DNA polymerase (EC 2.7.7.7) 0.9737 231 331 GO:0003684
GO:0003887
GO:0005829
GO:0009432
GO:0042276
AF-A0A7R9A0P7-F1-model_v4 DNA polymerase kappa (EC 2.7.7.7) 0.9712 50 226 GO:0003677
GO:0003887
GO:0005829
GO:0006260
GO:0042276
GO:0046872
AF-A0A7R9A0P7-F1-model_v4 DNA polymerase kappa (EC 2.7.7.7) 0.9659 50 226 GO:0003677
GO:0003887
GO:0005829
GO:0006260
GO:0042276
GO:0046872
AF-A0A3B8YR41-F1-model_v4 deleted 0.9641 2 165
AF-A0A6G1V7V9-F1-model_v4 deleted 0.9619 1 181

Map