F355122

General Info

Members Datasets Scaffolds Average Seq Length
242 182 486 312

Family's Representative Sequence

Representative Sequence 3300053153|Ga0500616_0000496|Ga0500616_0000496_15447_16547
Length 366
Sequence VPVKDTVKTDRTHAAGVPAASEGKPAQAAFSHRHLLGLYGLQAGDMRTVLTLARRYDGRDADGSEDPAAWRSVLRGKVVANLFFEDSTRTRVSFSVAAKRLGAEVIDLTAMGSSVSKGETVADTALNIAAMGVDALVMRHASSGAPQLVVRALESRVRAWDPNGVVCSVVNAGDGKHEHPTQGLLDTYTIAEAFGRLDGFDLKGLKVGIVGDIASSRVARSNLACLTALGAQVYFIGPPTLVPAAFEKMGARVVHDVDAVIGELDAVNVLRIQFERHGGGGVPAPGAKVPANVIASVREYHERYGLHAARLAKLKKGAVVMHPGPINRGVEMTANAADDKRSVVLRQVRHGVAVRMAVLELCIGAR

Samples

Sample ID Description Type Environment
1 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
12 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
13 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
14 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
15 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
16 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
17 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
18 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
19 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
22 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
23 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
24 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
25 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
26 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
27 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
28 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
29 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
30 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
31 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
32 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
33 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
34 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
35 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
36 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
37 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
39 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
40 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
41 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
42 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
43 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
45 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
46 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
48 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
50 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
51 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
52 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
53 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
54 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
55 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
56 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
57 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
58 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
59 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
60 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
61 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
62 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
63 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
64 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
65 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
66 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
69 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
88 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
89 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
90 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
91 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
92 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
93 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
94 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
95 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
96 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
97 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
98 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
99 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
100 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
101 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
102 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
103 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
104 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
105 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
106 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
107 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
108 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
109 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
110 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
111 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
112 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
113 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
114 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
115 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
116 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
117 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
118 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
119 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
120 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
121 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
122 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
123 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
124 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
125 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
126 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
127 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
128 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
129 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
130 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
131 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
132 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
133 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
134 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
135 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
136 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
137 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
138 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
139 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
140 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
141 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
143 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
144 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
145 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
146 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
147 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
148 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
150 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
151 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
152 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
153 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
154 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
155 3300049670 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought Metagenome Rhizosphere
156 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
157 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
158 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
159 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
160 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
161 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
162 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
163 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
164 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
165 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
166 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
167 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
168 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
169 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
170 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
171 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
172 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
173 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
174 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
175 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
176 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
177 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
178 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
179 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
180 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
181 2884634485 Algoriphagus kandeliae XY-J91 Isolate Unclassified
182 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.35
Metatranscriptomes 0
Isolates 1.65

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.68
Nodule 0
Rhizoplane 3.72
Rhizosphere 73.97
Stem 0
Stem Tuber 0
Unclassified 1.24

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500616_0000496 3300053153 Bacteria 50570
2 rootH1_10000325 3300003316 Bacteria 9086
3 rootH1_10022739 3300003316 Bacteria 28532
4 rootH2_10002538 3300003320 Bacteria 43669
5 rootH2_10024450 3300003320 Unclassified 3638
6 rootH2_10135253 3300003320 Bacteria 3139
7 rootL2_10018529 3300003322 Bacteria 10098
8 rootL2_10119757 3300003322 Bacteria 8834
9 rootH1_10003782 3300003316 Bacteria 1149
10 rootH1_10003782 3300003323 Bacteria 43069
11 rootH1_10008139 3300003316 Bacteria 26986
12 rootH1_10008139 3300003323 Bacteria 8261
13 rootH1_10008140 3300003323 Bacteria 14796
14 rootH1_10012599 3300003323 Bacteria 111210
15 Ga0065165_1000060 3300005262 Bacteria 180226
16 Ga0070658_10000237 3300005327 Bacteria 48878
17 Ga0070683_100004864 3300005329 Bacteria 11125
18 Ga0070683_100058679 3300005329 Bacteria 3575
19 Ga0070690_100066646 3300005330 Bacteria 2331
20 Ga0070680_100028368 3300005336 Bacteria 4489
21 Ga0070682_100079671 3300005337 Bacteria 2116
22 Ga0070691_10012063 3300005341 Bacteria 3957
23 Ga0070668_100112404 3300005347 Bacteria 2169
24 Ga0070673_100152054 3300005364 Bacteria 1961
25 Ga0070714_100187423 3300005435 Bacteria 1886
26 Ga0070713_100030459 3300005436 Bacteria 4285
27 Ga0070711_100107589 3300005439 Bacteria 2041
28 Ga0070700_100011236 3300005441 Bacteria 4957
29 Ga0070694_100125818 3300005444 Bacteria 1845
30 Ga0070678_100273829 3300005456 Bacteria 1425
31 Ga0070681_10040366 3300005458 Bacteria 4676
32 Ga0070681_10197104 3300005458 Bacteria 1932
33 Ga0070706_100064909 3300005467 Bacteria 3375
34 Ga0070706_100090774 3300005467 Bacteria 2833
35 Ga0070699_100145642 3300005518 Bacteria 2093
36 Ga0070679_100130201 3300005530 Bacteria 2497
37 Ga0070679_100210551 3300005530 Bacteria 1908
38 Ga0070684_100077899 3300005535 Bacteria 2928
39 Ga0070684_100122181 3300005535 Unclassified 2343
40 Ga0068853_100122308 3300005539 Bacteria 2323
41 Ga0070704_100026120 3300005549 Bacteria 3854
42 Ga0070664_100013868 3300005564 Bacteria 6570
43 Ga0068857_100066925 3300005577 Bacteria 3197
44 Ga0068856_100004607 3300005614 Bacteria 13713
45 Ga0070702_100243183 3300005615 Bacteria 1216
46 Ga0068852_100096716 3300005616 Bacteria 2655
47 Ga0068859_100232982 3300005617 Bacteria 1930
48 Ga0068864_100349349 3300005618 Bacteria 1395
49 Ga0068851_10000184 3300005834 Bacteria 31143
50 Ga0070717_10434073 3300006028 Bacteria 1182
51 Ga0097621_100181844 3300006237 Bacteria 1817
52 Ga0075428_100043984 3300006844 Bacteria 4909
53 Ga0075428_100106365 3300006844 Bacteria 3059
54 Ga0075428_100391974 3300006844 Bacteria 1489
55 Ga0075431_100246438 3300006847 Bacteria 1816
56 Ga0075433_10000355 3300006852 Bacteria 28719
57 Ga0075429_100322147 3300006880 Bacteria 1353
58 Ga0068865_100082694 3300006881 Bacteria 2309
59 Ga0097620_100232996 3300006931 Bacteria 1930
60 Ga0075435_100021246 3300007076 Bacteria 4988
61 Ga0099794_10056803 3300007265 Bacteria 1895
62 Ga0111539_10000432 3300009094 Bacteria 52790
63 Ga0111539_10008752 3300009094 Bacteria 12839
64 Ga0111539_10023949 3300009094 Bacteria 7501
65 Ga0111539_10055669 3300009094 Bacteria 4702
66 Ga0111539_10062360 3300009094 Bacteria 4413
67 Ga0111539_10281002 3300009094 Bacteria 1937
68 Ga0105245_10019030 3300009098 Bacteria 6010
69 Ga0114129_10105987 3300009147 Bacteria 3884
70 Ga0114129_10794571 3300009147 Bacteria 1208
71 Ga0105243_10038589 3300009148 Bacteria 3720
72 Ga0105242_10155879 3300009176 Bacteria 1995
73 Ga0105248_10134327 3300009177 Bacteria 2791
74 Ga0105239_10002616 3300010375 Bacteria 22778
75 Ga0105246_10016418 3300011119 Bacteria 4689
76 Ga0157371_10143350 3300013102 Bacteria 1702
77 Ga0157370_10064366 3300013104 Bacteria 3472
78 Ga0163162_10689587 3300013306 Bacteria 1144
79 Ga0157372_10018564 3300013307 Bacteria 7481
80 Ga0157375_10051972 3300013308 Bacteria 4027
81 Ga0163163_10008810 3300014325 Bacteria 8982
82 Ga0157380_10193993 3300014326 Bacteria 1796
83 Ga0182008_10171504 3300014497 Bacteria 1095
84 Ga0157377_10005390 3300014745 Bacteria 6007
85 Ga0157376_10125260 3300014969 Bacteria 2284
86 Ga0213874_10023415 3300021377 Bacteria 1722
87 Ga0213876_10002523 3300021384 Bacteria 10717
88 Ga0209676_1000351 3300025292 Bacteria 87135
89 Ga0209050_1002187 3300025298 Bacteria 17636
90 Ga0207426_1034674 3300025302 Bacteria 1617
91 Ga0207688_10001712 3300025901 Bacteria 11638
92 Ga0207684_10076297 3300025910 Bacteria 2849
93 Ga0207684_10126780 3300025910 Bacteria 2190
94 Ga0207652_10231019 3300025921 Bacteria 1667
95 Ga0207650_10439038 3300025925 Bacteria 1085
96 Ga0207687_10059824 3300025927 Bacteria 2685
97 Ga0207664_10022424 3300025929 Bacteria 4715
98 Ga0207690_10019849 3300025932 Bacteria 4143
99 Ga0207711_10264848 3300025941 Bacteria 1581
100 Ga0207661_10043760 3300025944 Bacteria 3535
101 Ga0207679_10286645 3300025945 Bacteria 1414
102 Ga0207667_10002960 3300025949 Bacteria 21086
103 Ga0207651_10078859 3300025960 Bacteria 2364
104 Ga0207712_10084598 3300025961 Bacteria 2318
105 Ga0207668_10118265 3300025972 Bacteria 2002
106 Ga0207708_10000450 3300026075 Bacteria 31989
107 Ga0207675_100086465 3300026118 Bacteria 2944
108 Ga0207698_10179519 3300026142 Bacteria 1874
109 Ga0209588_1001098 3300027671 Bacteria 6960
110 Ga0207428_10007989 3300027907 Bacteria 9605
111 Ga0207428_10057936 3300027907 Bacteria 3075
112 Ga0265318_10008436 3300028577 Bacteria 4588
113 Ga0307515_10000557 3300028794 Bacteria 87964
114 Ga0307515_10114834 3300028794 Bacteria 3108
115 Ga0307515_10123615 3300028794 Bacteria 2909
116 Ga0265331_10002056 3300031250 Bacteria 13933
117 Ga0307513_10271154 3300031456 Bacteria 1480
118 Ga0307509_10115466 3300031507 Bacteria 2677
119 Ga0307509_10196366 3300031507 Bacteria 1861
120 Ga0307408_100005234 3300031548 Bacteria 8697
121 Ga0307514_10059951 3300031649 Bacteria 2905
122 Ga0316576_10004570 3300031727 Bacteria 8320
123 Ga0307516_10179357 3300031730 Bacteria 1853
124 Ga0307412_10105691 3300031911 Bacteria 2000
125 Ga0307409_100044248 3300031995 Bacteria 3352
126 Ga0307409_100622928 3300031995 Bacteria 1069
127 Ga0307416_100003335 3300032002 Bacteria 9391
128 Ga0307414_10000017 3300032004 Bacteria 247306
129 Ga0307411_10148324 3300032005 Bacteria 1740
130 Ga0316574_0072771 3300035398 Bacteria 2173
131 Ga0316574_0094551 3300035398 Bacteria 1909
132 Ga0373927_0041260 3300035695 Bacteria 2993
133 Ga0395898_0599642 3300037466 Bacteria 1044
134 Ga0395905_0000015 3300037471 Bacteria 393880
135 Ga0395905_0022836 3300037471 Bacteria 5914
136 Ga0395905_0047597 3300037471 Bacteria 4018
137 Ga0395905_0077157 3300037471 Bacteria 3122
138 Ga0436364_0133197 3300037853 Bacteria 2563
139 Ga0436364_1139420 3300037853 Bacteria 1997
140 Ga0436365_0179721 3300039437 Bacteria 17630
141 Ga0436363_0050561 3300039450 Bacteria 1569
142 Ga0436363_0202658 3300039450 Bacteria 4471
143 Ga0436363_0289375 3300039450 Bacteria 1940
144 Ga0451793_1676812 3300041452 Bacteria 2067
145 Ga0451807_2313153 3300041486 Bacteria 1200
146 Ga0451577_0068811 3300042876 Bacteria 3157
147 Ga0451577_0150903 3300042876 Bacteria 2091
148 Ga0451577_0299193 3300042876 Unclassified 1458
149 Ga0451577_0405943 3300042876 Bacteria 1237
150 Ga0466969_0003110 3300044656 Bacteria 8841
151 Ga0466966_0043332 3300044684 Bacteria 2885
152 Ga0466961_0052469 3300044693 Bacteria 2602
153 Ga0466963_0002543 3300044694 Bacteria 10215
154 Ga0453684_0000137 3300044712 Bacteria 323390
155 Ga0466968_0115557 3300044735 Bacteria 1210
156 Ga0466970_0111311 3300044765 Bacteria 1495
157 Ga0466957_0319918 3300044842 Bacteria 1047
158 Ga0466959_0043646 3300045049 Bacteria 3304
159 Ga0451576_0001369 3300045051 Bacteria 41890
160 Ga0451576_0046624 3300045051 Bacteria 4563
161 Ga0451576_0063868 3300045051 Bacteria 3836
162 Ga0466958_0021553 3300045836 Bacteria 3767
163 Ga0466967_0134928 3300045976 Bacteria 2294
164 Ga0495590_0000112 3300046457 Bacteria 49282
165 Ga0495638_0000001 3300046460 Bacteria 1114121
166 Ga0495650_0009221 3300046471 Bacteria 5643
167 Ga0495632_0139440 3300046519 Bacteria 1125
168 Ga0495621_0001129 3300046539 Bacteria 6894
169 Ga0495656_0089430 3300046615 Bacteria 1405
170 Ga0495686_0038727 3300047472 Bacteria 3048
171 Ga0496101_0235047 3300048904 Bacteria 1425
172 Ga0496102_0050973 3300048905 Bacteria 3770
173 Ga0496104_0022832 3300048907 Bacteria 5748
174 Ga0496104_0084621 3300048907 Bacteria 3027
175 Ga0496105_0005376 3300048908 Bacteria 9713
176 Ga0496108_0020225 3300048911 Bacteria 5470
177 Ga0496112_0299871 3300048915 Bacteria 1552
178 Ga0496119_0008817 3300048922 Bacteria 8779
179 Ga0496120_0128921 3300048923 Bacteria 1298
180 Ga0496121_0036217 3300048924 Bacteria 4401
181 Ga0496126_0040288 3300048929 Bacteria 4331
182 Ga0501031_0130146 3300049568 Bacteria 1644
183 Ga0501032_0000423 3300049569 Bacteria 35034
184 Ga0501032_0208326 3300049569 Bacteria 1275
185 Ga0501033_0000445 3300049570 Bacteria 39566
186 Ga0501034_0084748 3300049571 Bacteria 3170
187 Ga0501034_0102273 3300049571 Bacteria 2858
188 Ga0501034_0234886 3300049571 Bacteria 1781
189 Ga0501034_0286847 3300049571 Bacteria 1585
190 Ga0501034_0484680 3300049571 Bacteria 1151
191 Ga0501037_0072869 3300049573 Bacteria 2497
192 Ga0501039_0072866 3300049575 Bacteria 2669
193 Ga0501042_0092761 3300049578 Bacteria 2168
194 Ga0501046_0047839 3300049580 Bacteria 3389
195 Ga0501048_0243671 3300049582 Bacteria 1276
196 Ga0501070_0037704 3300049586 Bacteria 4035
197 Ga0501070_0043929 3300049586 Bacteria 3718
198 Ga0501070_0089589 3300049586 Bacteria 2546
199 Ga0501072_0027450 3300049588 Bacteria 4440
200 Ga0501073_0000029 3300049589 Bacteria 117147
201 Ga0501073_0028639 3300049589 Bacteria 3980
202 Ga0501073_0189784 3300049589 Bacteria 1422
203 Ga0501202_015492 3300049652 Bacteria 1469
204 Ga0501202_031242 3300049652 Bacteria 1112
205 Ga0501217_002581 3300049661 Bacteria 3584
206 Ga0501236_000484 3300049670 Bacteria 4479
207 Ga0501225_0030874 3300049705 Bacteria 1474
208 Ga0501080_0000602 3300049742 Bacteria 28475
209 Ga0501080_0138740 3300049742 Bacteria 2249
210 Ga0501264_000313 3300049761 Bacteria 7614
211 Ga0501035_0008324 3300049822 Bacteria 9656
212 Ga0501044_0103306 3300049823 Bacteria 2864
213 Ga0501045_0068565 3300049824 Bacteria 2606
214 nmdc:mga0yw44_127527_c1 3300050492 Bacteria 1644
215 nmdc:mga0yw44_37250_c1 3300050492 Bacteria 2871
216 nmdc:mga05p37_208843_c1 3300050507 Bacteria 2361
217 nmdc:mga06r32_30954_c1 3300050510 Bacteria 5023
218 nmdc:mga06r32_64404_c1 3300050510 Bacteria 3535
219 nmdc:mga08y16_12456_c1 3300050511 Bacteria 8946
220 nmdc:mga08y16_2134_c1 3300050511 Bacteria 20269
221 nmdc:mga08y16_303989_c1 3300050511 Bacteria 1644
222 nmdc:mga0rr50_35109_c1 3300050513 Bacteria 3598
223 nmdc:mga08x19_13346_c1 3300050514 Bacteria 4964
224 nmdc:mga0a205_204544_c1 3300050515 Bacteria 1864
225 nmdc:mga0a205_42_c2 3300050515 Bacteria 38218
226 nmdc:mga0sz30_9814_c1 3300050516 Bacteria 3650
227 Ga0500556_0000141 3300053104 Bacteria 59919
228 Ga0500562_009627 3300053108 Bacteria 2442
229 Ga0500593_009073 3300053117 Bacteria 4114
230 Ga0500559_0000264 3300053136 Bacteria 40984
231 Ga0500568_0000064 3300053139 Bacteria 106056
232 Ga0500568_0044657 3300053139 Bacteria 1766
233 Ga0500604_0000355 3300053151 Bacteria 12633
234 Ga0500616_0000009 3300053153 Bacteria 779095
235 Ga0500616_0000965 3300053153 Bacteria 31137
236 Ga0500622_0000025 3300053156 Bacteria 236923
237 Ga0500622_0001448 3300053156 Bacteria 19019
238 Ga0500622_0001501 3300053156 Bacteria 18513
239 Ga0500627_0066785 3300053158 Bacteria 1589
240 Ga0466962_0038410 3300061719 Bacteria 2293
241 2522548294 2522125168 Bacteria 7376607
242 2857740032 2857737099 Bacteria 3104305
243 2884637069 2884634485 Bacteria 3928637
244 2911141213 2911138879 Bacteria 5811561
245 Ga0500616_0000496
246 rootH1_10000325
247 rootH1_10022739
248 rootH2_10002538
249 rootH2_10024450
250 rootH2_10135253
251 rootL2_10018529
252 rootL2_10119757
253 rootH1_10003782
254 rootH1_10008139
255 rootH1_10008140
256 rootH1_10012599
257 Ga0065165_1000060
258 Ga0070658_10000237
259 Ga0070683_100004864
260 Ga0070683_100058679
261 Ga0070690_100066646
262 Ga0070680_100028368
263 Ga0070682_100079671
264 Ga0070691_10012063
265 Ga0070668_100112404
266 Ga0070673_100152054
267 Ga0070714_100187423
268 Ga0070713_100030459
269 Ga0070711_100107589
270 Ga0070700_100011236
271 Ga0070694_100125818
272 Ga0070678_100273829
273 Ga0070681_10040366
274 Ga0070681_10197104
275 Ga0070706_100064909
276 Ga0070706_100090774
277 Ga0070699_100145642
278 Ga0070679_100130201
279 Ga0070679_100210551
280 Ga0070684_100077899
281 Ga0070684_100122181
282 Ga0068853_100122308
283 Ga0070704_100026120
284 Ga0070664_100013868
285 Ga0068857_100066925
286 Ga0068856_100004607
287 Ga0070702_100243183
288 Ga0068852_100096716
289 Ga0068859_100232982
290 Ga0068864_100349349
291 Ga0068851_10000184
292 Ga0070717_10434073
293 Ga0097621_100181844
294 Ga0075428_100043984
295 Ga0075428_100106365
296 Ga0075428_100391974
297 Ga0075431_100246438
298 Ga0075433_10000355
299 Ga0075429_100322147
300 Ga0068865_100082694
301 Ga0097620_100232996
302 Ga0075435_100021246
303 Ga0099794_10056803
304 Ga0111539_10000432
305 Ga0111539_10008752
306 Ga0111539_10023949
307 Ga0111539_10055669
308 Ga0111539_10062360
309 Ga0111539_10281002
310 Ga0105245_10019030
311 Ga0114129_10105987
312 Ga0114129_10794571
313 Ga0105243_10038589
314 Ga0105242_10155879
315 Ga0105248_10134327
316 Ga0105239_10002616
317 Ga0105246_10016418
318 Ga0157371_10143350
319 Ga0157370_10064366
320 Ga0163162_10689587
321 Ga0157372_10018564
322 Ga0157375_10051972
323 Ga0163163_10008810
324 Ga0157380_10193993
325 Ga0182008_10171504
326 Ga0157377_10005390
327 Ga0157376_10125260
328 Ga0213874_10023415
329 Ga0213876_10002523
330 Ga0209676_1000351
331 Ga0209050_1002187
332 Ga0207426_1034674
333 Ga0207688_10001712
334 Ga0207684_10076297
335 Ga0207684_10126780
336 Ga0207652_10231019
337 Ga0207650_10439038
338 Ga0207687_10059824
339 Ga0207664_10022424
340 Ga0207690_10019849
341 Ga0207711_10264848
342 Ga0207661_10043760
343 Ga0207679_10286645
344 Ga0207667_10002960
345 Ga0207651_10078859
346 Ga0207712_10084598
347 Ga0207668_10118265
348 Ga0207708_10000450
349 Ga0207675_100086465
350 Ga0207698_10179519
351 Ga0209588_1001098
352 Ga0207428_10007989
353 Ga0207428_10057936
354 Ga0265318_10008436
355 Ga0307515_10000557
356 Ga0307515_10114834
357 Ga0307515_10123615
358 Ga0265331_10002056
359 Ga0307513_10271154
360 Ga0307509_10115466
361 Ga0307509_10196366
362 Ga0307408_100005234
363 Ga0307514_10059951
364 Ga0316576_10004570
365 Ga0307516_10179357
366 Ga0307412_10105691
367 Ga0307409_100044248
368 Ga0307409_100622928
369 Ga0307416_100003335
370 Ga0307414_10000017
371 Ga0307411_10148324
372 Ga0316574_0072771
373 Ga0316574_0094551
374 Ga0373927_0041260
375 Ga0395898_0599642
376 Ga0395905_0000015
377 Ga0395905_0022836
378 Ga0395905_0047597
379 Ga0395905_0077157
380 Ga0436364_0133197
381 Ga0436364_1139420
382 Ga0436365_0179721
383 Ga0436363_0050561
384 Ga0436363_0202658
385 Ga0436363_0289375
386 Ga0451793_1676812
387 Ga0451807_2313153
388 Ga0451577_0068811
389 Ga0451577_0150903
390 Ga0451577_0299193
391 Ga0451577_0405943
392 Ga0466969_0003110
393 Ga0466966_0043332
394 Ga0466961_0052469
395 Ga0466963_0002543
396 Ga0453684_0000137
397 Ga0466968_0115557
398 Ga0466970_0111311
399 Ga0466957_0319918
400 Ga0466959_0043646
401 Ga0451576_0001369
402 Ga0451576_0046624
403 Ga0451576_0063868
404 Ga0466958_0021553
405 Ga0466967_0134928
406 Ga0495590_0000112
407 Ga0495638_0000001
408 Ga0495650_0009221
409 Ga0495632_0139440
410 Ga0495621_0001129
411 Ga0495656_0089430
412 Ga0495686_0038727
413 Ga0496101_0235047
414 Ga0496102_0050973
415 Ga0496104_0022832
416 Ga0496104_0084621
417 Ga0496105_0005376
418 Ga0496108_0020225
419 Ga0496112_0299871
420 Ga0496119_0008817
421 Ga0496120_0128921
422 Ga0496121_0036217
423 Ga0496126_0040288
424 Ga0501031_0130146
425 Ga0501032_0000423
426 Ga0501032_0208326
427 Ga0501033_0000445
428 Ga0501034_0084748
429 Ga0501034_0102273
430 Ga0501034_0234886
431 Ga0501034_0286847
432 Ga0501034_0484680
433 Ga0501037_0072869
434 Ga0501039_0072866
435 Ga0501042_0092761
436 Ga0501046_0047839
437 Ga0501048_0243671
438 Ga0501070_0037704
439 Ga0501070_0043929
440 Ga0501070_0089589
441 Ga0501072_0027450
442 Ga0501073_0000029
443 Ga0501073_0028639
444 Ga0501073_0189784
445 Ga0501202_015492
446 Ga0501202_031242
447 Ga0501217_002581
448 Ga0501236_000484
449 Ga0501225_0030874
450 Ga0501080_0000602
451 Ga0501080_0138740
452 Ga0501264_000313
453 Ga0501035_0008324
454 Ga0501044_0103306
455 Ga0501045_0068565
456 nmdc:mga0yw44_127527_c1
457 nmdc:mga0yw44_37250_c1
458 nmdc:mga05p37_208843_c1
459 nmdc:mga06r32_30954_c1
460 nmdc:mga06r32_64404_c1
461 nmdc:mga08y16_12456_c1
462 nmdc:mga08y16_2134_c1
463 nmdc:mga08y16_303989_c1
464 nmdc:mga0rr50_35109_c1
465 nmdc:mga08x19_13346_c1
466 nmdc:mga0a205_204544_c1
467 nmdc:mga0a205_42_c2
468 nmdc:mga0sz30_9814_c1
469 Ga0500556_0000141
470 Ga0500562_009627
471 Ga0500593_009073
472 Ga0500559_0000264
473 Ga0500568_0000064
474 Ga0500568_0044657
475 Ga0500604_0000355
476 Ga0500616_0000009
477 Ga0500616_0000965
478 Ga0500622_0000025
479 Ga0500622_0001448
480 Ga0500622_0001501
481 Ga0500627_0066785
482 Ga0466962_0038410
483 2522548294
484 2857740032
485 2884637069
486 2911141213

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00185

OTCace

Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

203

362

0.86

PF02729

OTCace_N

Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain

33

192

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
4bjh-assembly1.cif.gz_B crystal structure of the aquifex reactor complex formed by dihydroorotase (h180a, h232a) with dihydroorotate and aspartate transcarbamoylase with n-(phosphonacetyl)-l-aspartate (pala) 0.9547 8 302
3r7f-assembly1.cif.gz_C crystal structure of cp-bound aspartate transcarbamoylase from bacillus subtilis 0.954 6 304
3r7f-assembly1.cif.gz_C crystal structure of cp-bound aspartate transcarbamoylase from bacillus subtilis 0.9445 6 304
6pnz-assembly1.cif.gz_C the structure of the aspartate transcarbamoylase trimer from staphylococcus aureus complexed with pala at 2.27 resolution. 0.9356 6 300
4bjh-assembly1.cif.gz_B crystal structure of the aquifex reactor complex formed by dihydroorotase (h180a, h232a) with dihydroorotate and aspartate transcarbamoylase with n-(phosphonacetyl)-l-aspartate (pala) 0.9356 8 302
ID Description Score Start End Superfamily
af_P9WIT7_141_293_3.40.50.1370 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Aspartate/ornithine carbamoyltransferase 0.9536 138 289 3.40.50.1370
af_P9WIT7_5_140_3.40.50.1370 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Aspartate/ornithine carbamoyltransferase 0.953 8 137 3.40.50.1370
4bjhB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Aspartate/ornithine carbamoyltransferase 0.9483 137 283 3.40.50.1370
af_P9WIT7_144_278_3.40.50.1370 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Aspartate/ornithine carbamoyltransferase 0.9452 142 275 3.40.50.1370
4bjhB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Aspartate/ornithine carbamoyltransferase 0.942 137 283 3.40.50.1370
ID Description Score Start End GO Terms
AF-A0A4Q3H428-F1-model_v4 deleted 0.9985 2 142
AF-A0A2D9BUA1-F1-model_v4 deleted 0.9976 1 129
AF-A0A350M6Y2-F1-model_v4 Aspartate carbamoyltransferase 0.9964 1 184 GO:0006520
GO:0016597
GO:0016743
AF-A0A497ALQ5-F1-model_v4 Aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain-containing protein 0.995 6 153 GO:0005829
GO:0006520
GO:0016597
GO:0016743
AF-A0A7Y7BI30-F1-model_v4 Aspartate carbamoyltransferase 0.9948 132 305 GO:0005829
GO:0006520
GO:0016597
GO:0016743
GO:0044205

Map