F354297

General Info

Members Datasets Scaffolds Average Seq Length
242 157 211 479

Family's Representative Sequence

Representative Sequence 3300003775|Ga0055524_1004161|Ga0055524_10041615
Length 496
Sequence MRPCASACRRCPWTPDVPGSFLFYDLETFGADPRTTRIAQFAAIRTDCDLNQIETPISVFVRPADDLLPSPGATMVTGITPQHALREGMSEASAFALIFEEMARPETCSLGYNSLRFDDEFVRHGLFRNFFDAYEREWRGGNSRWDLLDVLRLAHAIRPEGLAWPTREDGATSFKLEHLAEANGVRIGDAHEALSDVRALIGLARKLKEAQPRLWDYALRLRDKRYASSLMDVVAMKPVLHVSQKFPASRLCAAPVLPVARHPRIDSRVIVFDLEQDPEALLRLGPEGIAERLYVRAADLPEGESRVALKEVHTNRCPALISWDHLRGPDFDRLRIDPVLAEERAAIIRDAGPALVEKVRQVFAFDRERTPSDVDASLYDGFIGDGDKRLFPQVRTTPPEALGLAEFAFRDVRLPEMLFRYRARNWPETLDAEEWARWNDYRRWRLYDESGASEYSFARYAEEIGMLRALHAQDTHKQVLLDHLEMWGREIAAGLE

Samples

Sample ID Description Type Environment
1 2571042365 Lysobacter oryzae DSM 21044 Isolate Rhizosphere
2 2643221559 Lysobacter sp. Root559 Isolate Unclassified
3 2643221573 Lysobacter sp. Root604 Isolate Unclassified
4 2643221586 Lysobacter sp. Root667 Isolate Unclassified
5 2643221593 Lysobacter sp. Root690 Isolate Unclassified
6 2643221612 Lysobacter sp. Root76 Isolate Unclassified
7 2643221695 Lysobacter sp. Root494 Isolate Unclassified
8 2643221720 Lysobacter sp. Root916 Isolate Unclassified
9 2643221727 Lysobacter sp. Root96 Isolate Unclassified
10 2643221728 Lysobacter sp. Root983 Isolate Unclassified
11 2842757796 Stenotrophomonas sp. R-72406 Isolate Unclassified
12 2852649853 Stenotrophomonas sp. JAI102 Isolate Rhizosphere
13 2857442823 Stenotrophomonas sp. R-74235 Isolate Unclassified
14 2894414249 Luteimonas sp. LNNU 24178 Isolate Rhizosphere
15 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
16 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
17 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
18 2895525241 Pseudoxanthomonas sp. SGT-18 Isolate Rhizosphere
19 2919513703 Luteimonas sp. 3794 Isolate Unclassified
20 2919675420 Luteimonas terrae 4099 Isolate Unclassified
21 2939589442 Stenotrophomonas rhizophila 716 Isolate Rhizosphere
22 2939622612 Stenotrophomonas sp. 2619 Isolate Rhizosphere
23 2941475908 Stenotrophomonas rhizophila 2680 Isolate Rhizosphere
24 2941489479 Lysobacter enzymogenes 2943 Isolate Rhizosphere
25 2974307012 Stenotrophomonas sp. SORGH_AS_0282 Isolate Unclassified
26 2977247770 Stenotrophomonas rhizophila SORGH_AS 457 Isolate Unclassified
27 2984514374 Stenotrophomonas sp. SORGH_AS282 Isolate Aerial Root
28 2995948881 Lysobacter enzymogenes B25 Isolate Unclassified
29 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
30 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
31 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
32 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
33 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
34 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
35 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
36 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
37 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
38 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
39 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
40 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
41 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
42 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
43 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
44 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
45 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
46 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
47 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
48 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
49 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
50 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
51 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
52 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
53 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
54 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
55 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
56 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
57 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
58 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
59 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
60 3300015689 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A02 Metagenome Rhizosphere
61 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
62 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
63 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
64 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
65 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
66 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
67 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
68 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
70 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
71 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
72 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
74 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
83 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
84 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
85 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
86 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
87 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
88 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
89 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
90 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
91 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
92 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
93 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
94 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
95 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
96 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
97 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
98 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
99 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
100 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
101 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
102 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
103 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
104 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
105 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
106 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
107 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
108 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
109 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
110 3300042142 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_072516_1610 Metagenome Rhizosphere
111 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
112 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
113 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
114 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
115 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
116 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
117 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
118 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
119 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
120 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
121 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
122 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
123 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
124 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
125 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
126 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
127 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
128 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
129 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
130 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
131 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
132 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
133 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
134 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
135 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
136 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
137 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
138 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
139 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
143 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
144 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
146 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
147 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
148 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
149 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
150 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
151 3300049772 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E11_B_4_control Metagenome Rhizosphere
152 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
153 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
154 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
155 8002869464 Pseudoxanthomonas helianthi 110414 Isolate Unclassified
156 8003014200 Lysobacter changpingensis Cm-3-T8 Isolate Rhizosphere
157 8021648035 Xanthomonas sp. LMG 12461 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.19
Metatranscriptomes 0
Isolates 12.81

Biome Distribution

Category Percentage (%)
Aerial Root 0.41
Bulb 0
Endosphere 31.4
Nodule 0
Rhizoplane 2.07
Rhizosphere 43.8
Stem 0
Stem Tuber 0
Unclassified 22.31

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25150J39212_1000179 3300002774 Bacteria 35481
2 JGI25151J46595_10000138 3300003187 Bacteria 96369
3 JGI25151J46595_10000148 3300003187 Bacteria 92040
4 JGI25153J46596_10000102 3300003215 Bacteria 96369
5 rootL2_10059421 3300003322 Bacteria 6604
6 Ga0055526_1000006 3300003771 Bacteria 330857
7 Ga0055537_1000018 3300003773 Bacteria 123452
8 Ga0055537_1000349 3300003773 Bacteria 31443
9 Ga0055524_1000009 3300003775 Bacteria 295254
10 Ga0055524_1004161 3300003775 Bacteria 6764
11 Ga0055524_1005329 3300003775 Bacteria 5764
12 Ga0055524_1008744 3300003775 Bacteria 4182
13 Ga0055536_1002383 3300003781 Bacteria 10598
14 Ga0055536_1008095 3300003781 Bacteria 4585
15 Ga0055534_1000004 3300003784 Bacteria 295251
16 Ga0055534_1000073 3300003784 Bacteria 77473
17 Ga0055528_1000003 3300003790 Bacteria 330875
18 Ga0055528_1000080 3300003790 Bacteria 75390
19 Ga0055530_10001767 3300003791 Bacteria 15103
20 Ga0055530_10001774 3300003791 Bacteria 15004
21 Ga0055530_10003477 3300003791 Bacteria 8935
22 Ga0055531_10003032 3300003794 Bacteria 10884
23 Ga0055531_10008611 3300003794 Bacteria 5347
24 Ga0055531_10010262 3300003794 Bacteria 4679
25 Ga0055531_10010556 3300003794 Bacteria 4572
26 Ga0055531_10010965 3300003794 Bacteria 4434
27 Ga0070659_100019997 3300005366 Bacteria 5083
28 Ga0070667_100111576 3300005367 Bacteria 2372
29 Ga0070679_100015522 3300005530 Bacteria 7319
30 Ga0070672_100019333 3300005543 Bacteria 4942
31 Ga0070665_100062091 3300005548 Bacteria 3746
32 Ga0070664_100148140 3300005564 Bacteria 2071
33 Ga0075364_10001177 3300006051 Bacteria 14015
34 Ga0075364_10030348 3300006051 Bacteria 3469
35 Ga0075367_10026170 3300006178 Bacteria 3306
36 Ga0105243_10125473 3300009148 Bacteria 2171
37 Ga0157373_10014543 3300013100 Bacteria 5769
38 Ga0157371_10054463 3300013102 Bacteria 2841
39 Ga0157369_10230702 3300013105 Bacteria 1935
40 Ga0157378_10028588 3300013297 Bacteria 4921
41 Ga0157372_10191753 3300013307 Bacteria 2367
42 Ga0157375_10026531 3300013308 Bacteria 5401
43 Ga0182008_10001765 3300014497 Bacteria 14173
44 Ga0182008_10002596 3300014497 Bacteria 11222
45 Ga0182006_1015906 3300015261 Bacteria 3216
46 Ga0182007_10000353 3300015262 Bacteria 29023
47 Ga0182005_1000344 3300015265 Bacteria 26562
48 Ga0183360_10001 3300015689 Bacteria 3943671
49 Ga0163161_10002464 3300017792 Bacteria 13212
50 Ga0207425_1000078 3300025245 Bacteria 104429
51 Ga0207425_1001471 3300025245 Bacteria 9810
52 Ga0209129_1000157 3300025258 Bacteria 105043
53 Ga0209565_1000001 3300025263 Bacteria 2950419
54 Ga0209565_1000022 3300025263 Bacteria 390888
55 Ga0209673_1000001 3300025273 Bacteria 3176258
56 Ga0209673_1000087 3300025273 Bacteria 205213
57 Ga0209130_1006405 3300025284 Bacteria 3832
58 Ga0209675_1000001 3300025291 Bacteria 2950293
59 Ga0209675_1000060 3300025291 Bacteria 184316
60 Ga0209675_1012085 3300025291 Bacteria 2807
61 Ga0209676_1000976 3300025292 Bacteria 34430
62 Ga0209676_1002896 3300025292 Bacteria 11248
63 Ga0209676_1004112 3300025292 Bacteria 8289
64 Ga0209676_1005159 3300025292 Bacteria 6946
65 Ga0209676_1006425 3300025292 Bacteria 5806
66 Ga0209676_1007165 3300025292 Bacteria 5318
67 Ga0209025_1000005 3300025294 Bacteria 1272149
68 Ga0209025_1000054 3300025294 Bacteria 317002
69 Ga0209025_1000888 3300025294 Bacteria 46712
70 Ga0209025_1007641 3300025294 Bacteria 7995
71 Ga0209564_1000001 3300025295 Bacteria 3176258
72 Ga0209564_1000302 3300025295 Bacteria 97770
73 Ga0209758_1000062 3300025297 Bacteria 317002
74 Ga0209758_1032341 3300025297 Bacteria 2126
75 Ga0209050_1001760 3300025298 Bacteria 21464
76 Ga0209050_1002154 3300025298 Bacteria 17919
77 Ga0209050_1004098 3300025298 Bacteria 10183
78 Ga0209256_1000002 3300025299 Bacteria 1906740
79 Ga0209256_1001644 3300025299 Bacteria 21742
80 Ga0209256_1003098 3300025299 Bacteria 12168
81 Ga0209256_1003127 3300025299 Bacteria 12071
82 Ga0209256_1003341 3300025299 Bacteria 11380
83 Ga0209051_1000606 3300025303 Bacteria 41704
84 Ga0209051_1003171 3300025303 Bacteria 11006
85 Ga0209257_1000014 3300025304 Bacteria 946850
86 Ga0209257_1000080 3300025304 Bacteria 312038
87 Ga0209257_1000121 3300025304 Bacteria 222588
88 Ga0209257_1000369 3300025304 Bacteria 90982
89 Ga0209257_1002588 3300025304 Bacteria 17583
90 Ga0209257_1003930 3300025304 Bacteria 12080
91 Ga0209257_1005504 3300025304 Bacteria 8844
92 Ga0209257_1005863 3300025304 Bacteria 8308
93 Ga0209257_1006948 3300025304 Bacteria 7058
94 Ga0207713_1007579 3300025735 Bacteria 6371
95 Ga0207657_10098343 3300025919 Bacteria 2432
96 Ga0207657_10099092 3300025919 Bacteria 2421
97 Ga0207652_10035867 3300025921 Bacteria 4189
98 Ga0207681_10013804 3300025923 Bacteria 5005
99 Ga0207691_10021853 3300025940 Bacteria 6039
100 Ga0207658_10070198 3300025986 Bacteria 2650
101 Ga0209371_1000059 3300027312 Bacteria 237154
102 Ga0209999_1003425 3300027543 Bacteria 2834
103 Ga0209983_1001641 3300027665 Bacteria 4954
104 Ga0268256_1000055 3300030500 Bacteria 237299
105 Ga0316177_1024351 3300030731 Bacteria 2054
106 Ga0316183_1073510 3300030742 Bacteria 3779
107 Ga0265327_10062801 3300031251 Bacteria 1889
108 Ga0307513_10049645 3300031456 Bacteria 4543
109 Ga0307408_100020378 3300031548 Bacteria 4475
110 Ga0307413_10004383 3300031824 Bacteria 6136
111 Ga0307406_10032912 3300031901 Bacteria 3168
112 Ga0307406_10112451 3300031901 Bacteria 1878
113 Ga0307414_10000472 3300032004 Bacteria 21101
114 Ga0307414_10004214 3300032004 Bacteria 7788
115 Ga0307411_10026666 3300032005 Bacteria 3483
116 Ga0395899_0152824 3300037312 Bacteria 1635
117 Ga0395900_0004118 3300037418 Bacteria 15485
118 Ga0395900_0243540 3300037418 Bacteria 1803
119 Ga0395898_0114936 3300037466 Bacteria 2579
120 Ga0395905_0000577 3300037471 Bacteria 49489
121 Ga0395905_0145441 3300037471 Bacteria 2230
122 Ga0395905_0208344 3300037471 Bacteria 1832
123 Ga0395901_0006121 3300038443 Bacteria 12193
124 Ga0237819_00252 3300038705 Bacteria 19595
125 Ga0439447_005276 3300041407 Bacteria 4311
126 Ga0439465_0009365 3300041413 Bacteria 3084
127 Ga0451791_0800296 3300041451 Bacteria 3124
128 Ga0451797_0224420 3300041453 Bacteria 1552
129 Ga0451837_1464049 3300041494 Bacteria 3991
130 Ga0451843_0921354 3300041509 Bacteria 1623
131 Ga0451843_1762778 3300041509 Bacteria 2619
132 Ga0439432_008935 3300042006 Bacteria 3501
133 Ga0439449_0000062 3300042007 Bacteria 33240
134 Ga0439449_0006160 3300042007 Bacteria 4583
135 Ga0439449_0036884 3300042007 Bacteria 1818
136 Ga0439462_0002149 3300042015 Bacteria 4533
137 Ga0450905_004761 3300042142 Bacteria 1808
138 Ga0451577_0003011 3300042876 Bacteria 19199
139 Ga0495606_0054965 3300046507 Bacteria 2576
140 Ga0495610_0010303 3300046512 Bacteria 5820
141 Ga0495631_0004930 3300046518 Bacteria 7035
142 Ga0495643_0003481 3300046522 Bacteria 11485
143 Ga0495609_0095307 3300046538 Bacteria 1292
144 Ga0495621_0000373 3300046539 Bacteria 10954
145 Ga0495621_0029354 3300046539 Bacteria 1874
146 Ga0495633_0008578 3300046558 Bacteria 5743
147 Ga0495633_0021103 3300046558 Bacteria 3262
148 Ga0495668_0001767 3300046616 Bacteria 19788
149 Ga0495660_0038513 3300046810 Bacteria 2658
150 Ga0495636_0000522 3300047318 Bacteria 14147
151 Ga0495636_0035597 3300047318 Bacteria 2051
152 Ga0495672_0000455 3300047320 Bacteria 48439
153 Ga0495677_0031382 3300047445 Bacteria 1934
154 Ga0495686_0010033 3300047472 Bacteria 6765
155 Ga0496105_0017638 3300048908 Bacteria 5727
156 Ga0496108_0031282 3300048911 Bacteria 4415
157 Ga0496109_0090784 3300048912 Bacteria 2825
158 Ga0496116_0009818 3300048919 Bacteria 8110
159 Ga0496117_0006203 3300048920 Bacteria 12192
160 Ga0496117_0013334 3300048920 Bacteria 7177
161 Ga0496118_0006389 3300048921 Bacteria 12979
162 Ga0496119_0000851 3300048922 Bacteria 40261
163 Ga0496120_0001387 3300048923 Bacteria 29403
164 Ga0496121_0000755 3300048924 Bacteria 59452
165 Ga0496121_0011918 3300048924 Bacteria 9570
166 Ga0496121_0031203 3300048924 Bacteria 4873
167 Ga0496121_0038544 3300048924 Bacteria 4228
168 Ga0496122_0012114 3300048925 Bacteria 8634
169 Ga0496122_0018868 3300048925 Bacteria 6339
170 Ga0496122_0034021 3300048925 Bacteria 4179
171 Ga0496122_0044461 3300048925 Bacteria 3465
172 Ga0496123_0005952 3300048926 Bacteria 12009
173 Ga0496123_0011606 3300048926 Bacteria 7615
174 Ga0496123_0024153 3300048926 Bacteria 4628
175 Ga0496123_0041202 3300048926 Bacteria 3204
176 Ga0496123_0101555 3300048926 Bacteria 1672
177 Ga0496124_0000009 3300048927 Bacteria 734820
178 Ga0496124_0009017 3300048927 Bacteria 10320
179 Ga0496124_0022121 3300048927 Bacteria 5837
180 Ga0496124_0032020 3300048927 Bacteria 4650
181 Ga0496124_0049394 3300048927 Bacteria 3589
182 Ga0496124_0076108 3300048927 Bacteria 2771
183 Ga0496125_0008250 3300048928 Bacteria 10940
184 Ga0496125_0009310 3300048928 Bacteria 10130
185 Ga0496125_0014372 3300048928 Bacteria 7713
186 Ga0496125_0023264 3300048928 Bacteria 5723
187 Ga0496126_0010449 3300048929 Bacteria 9727
188 Ga0496126_0026947 3300048929 Bacteria 5501
189 Ga0501032_0032486 3300049569 Bacteria 3577
190 Ga0501033_0144342 3300049570 Bacteria 1720
191 Ga0501034_0000355 3300049571 Bacteria 78528
192 Ga0501034_0005495 3300049571 Bacteria 13833
193 Ga0501034_0044199 3300049571 Bacteria 4505
194 Ga0501036_0010334 3300049572 Bacteria 7703
195 Ga0501037_0009364 3300049573 Bacteria 7190
196 Ga0501038_0004661 3300049574 Bacteria 12768
197 Ga0501038_0056708 3300049574 Bacteria 3364
198 Ga0501039_0009705 3300049575 Bacteria 7336
199 Ga0501043_0071235 3300049579 Bacteria 2731
200 Ga0501043_0144402 3300049579 Bacteria 1863
201 Ga0501047_0199435 3300049581 Bacteria 1862
202 Ga0501070_0012941 3300049586 Bacteria 7033
203 Ga0501225_0007339 3300049705 Bacteria 3195
204 Ga0501080_0011403 3300049742 Bacteria 8141
205 Ga0501275_000214 3300049772 Bacteria 6696
206 Ga0501044_0000088 3300049823 Bacteria 112674
207 Ga0501044_0015743 3300049823 Bacteria 8145
208 nmdc:mga00v17_11438_c1 3300050491 Bacteria 4876
209 nmdc:mga00v17_53355_c1 3300050491 Bacteria 2464
210 nmdc:mga00v17_88920_c1 3300050491 Bacteria 1938
211 Ga0500634_0000095 3300053161 Bacteria 34310

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049579 Ga0501043_0071235 Ga0501043_0071235_1484_2710 407
2 3300046538 Ga0495609_0095307 Ga0495609_0095307_16_1251 411
3 3300003771 Ga0055526_1000006 Ga0055526_10000064 451
4 3300003773 Ga0055537_1000018 Ga0055537_10000184 451
5 3300003775 Ga0055524_1000009 Ga0055524_1000009223 451
6 3300003784 Ga0055534_1000004 Ga0055534_1000004223 451
7 3300003790 Ga0055528_1000003 Ga0055528_1000003256 451
8 3300025263 Ga0209565_1000001 Ga0209565_10000012171 451
9 3300025273 Ga0209673_1000001 Ga0209673_10000012171 451
10 3300025291 Ga0209675_1000001 Ga0209675_1000001361 451
11 3300025295 Ga0209564_1000001 Ga0209564_1000001523 451
12 3300025299 Ga0209256_1000002 Ga0209256_10000021029 451
13 3300053161 Ga0500634_0000095 Ga0500634_0000095_2365_3804 457
14 3300046558 Ga0495633_0008578 Ga0495633_0008578_2420_3859 458
15 3300049574 Ga0501038_0056708 Ga0501038_0056708_1321_2760 459
16 3300048924 Ga0496121_0000755 Ga0496121_0000755_1732_3177 464
17 3300049581 Ga0501047_0199435 Ga0501047_0199435_232_1671 465
18 3300031251 Ga0265327_10062801 Ga0265327_100628012 469
19 3300049571 Ga0501034_0000355 Ga0501034_0000355_31995_33485 469
20 3300049570 Ga0501033_0144342 Ga0501033_0144342_54_1484 473
21 3300049823 Ga0501044_0000088 Ga0501044_0000088_72849_74279 473
22 iso_pu_bacteria 2571042365 2572255021 475
23 iso_pu_bacteria 2643221559 2643817682 475
24 iso_pu_bacteria 2643221573 2643878906 475
25 iso_pu_bacteria 2643221586 2643940392 475
26 iso_pu_bacteria 2643221593 2643976701 475
27 iso_pu_bacteria 2643221612 2644079467 475
28 iso_pu_bacteria 2643221695 2644529431 475
29 iso_pu_bacteria 2643221720 2644660222 475
30 iso_pu_bacteria 2643221727 2644694909 475
31 iso_pu_bacteria 2643221728 2644697524 475
32 iso_pu_bacteria 2842757796 2842760158 475
33 iso_pu_bacteria 2852649853 2852650305 475
34 iso_pu_bacteria 2857442823 2857446783 475
35 iso_pu_bacteria 2894414249 2894415701 475
36 iso_pu_bacteria 2895498888 2895500658 475
37 iso_pu_bacteria 2895511927 2895516472 475
38 iso_pu_bacteria 2895522137 2895523608 475
39 iso_pu_bacteria 2895525241 2895526810 475
40 iso_pu_bacteria 2919513703 2919516385 475
41 iso_pu_bacteria 2919675420 2919676962 475
42 iso_pu_bacteria 2939589442 2939592927 475
43 iso_pu_bacteria 2939622612 2939625667 475
44 iso_pu_bacteria 2941475908 2941476390 475
45 iso_pu_bacteria 2941489479 2941490481 475
46 iso_pu_bacteria 2974307012 2974308468 475
47 iso_pu_bacteria 2977247770 2977249222 475
48 iso_pu_bacteria 2984514374 2984516322 475
49 iso_pu_bacteria 2995948881 2995951552 475
50 iso_pu_bacteria 8002869464 8002871964 475
51 iso_pu_bacteria 8021648035 8021652024 475
52 3300005367 Ga0070667_100111576 Ga0070667_1001115762 477
53 3300013297 Ga0157378_10028588 Ga0157378_100285882 477
54 3300025986 Ga0207658_10070198 Ga0207658_100701982 477
55 3300027543 Ga0209999_1003425 Ga0209999_10034252 477
56 3300027665 Ga0209983_1001641 Ga0209983_10016414 477
57 3300049705 Ga0501225_0007339 Ga0501225_0007339_681_2135 477
58 3300048911 Ga0496108_0031282 Ga0496108_0031282_2138_3577 478
59 3300002774 JGI25150J39212_1000179 JGI25150J39212_100017910 479
60 3300003187 JGI25151J46595_10000138 JGI25151J46595_1000013858 479
61 3300003187 JGI25151J46595_10000148 JGI25151J46595_1000014812 479
62 3300003215 JGI25153J46596_10000102 JGI25153J46596_1000010258 479
63 3300003322 rootL2_10059421 rootL2_100594213 479
64 3300003773 Ga0055537_1000349 Ga0055537_100034915 479
65 3300003775 Ga0055524_1004161 Ga0055524_10041615 479
66 3300003775 Ga0055524_1005329 Ga0055524_10053292 479
67 3300003775 Ga0055524_1008744 Ga0055524_10087443 479
68 3300003781 Ga0055536_1002383 Ga0055536_10023839 479
69 3300003781 Ga0055536_1008095 Ga0055536_10080952 479
70 3300003784 Ga0055534_1000073 Ga0055534_100007339 479
71 3300003790 Ga0055528_1000080 Ga0055528_100008026 479
72 3300003791 Ga0055530_10001767 Ga0055530_100017675 479
73 3300003791 Ga0055530_10001774 Ga0055530_100017743 479
74 3300003791 Ga0055530_10003477 Ga0055530_100034775 479
75 3300003794 Ga0055531_10003032 Ga0055531_1000303210 479
76 3300003794 Ga0055531_10008611 Ga0055531_100086112 479
77 3300003794 Ga0055531_10010262 Ga0055531_100102622 479
78 3300003794 Ga0055531_10010556 Ga0055531_100105562 479
79 3300003794 Ga0055531_10010965 Ga0055531_100109652 479
80 3300005366 Ga0070659_100019997 Ga0070659_1000199972 479
81 3300005530 Ga0070679_100015522 Ga0070679_1000155226 479
82 3300005543 Ga0070672_100019333 Ga0070672_1000193332 479
83 3300005548 Ga0070665_100062091 Ga0070665_1000620913 479
84 3300005564 Ga0070664_100148140 Ga0070664_1001481402 479
85 3300006051 Ga0075364_10001177 Ga0075364_1000117711 479
86 3300006051 Ga0075364_10030348 Ga0075364_100303482 479
87 3300006178 Ga0075367_10026170 Ga0075367_100261702 479
88 3300009148 Ga0105243_10125473 Ga0105243_101254732 479
89 3300013100 Ga0157373_10014543 Ga0157373_100145434 479
90 3300013102 Ga0157371_10054463 Ga0157371_100544632 479
91 3300013105 Ga0157369_10230702 Ga0157369_102307022 479
92 3300013307 Ga0157372_10191753 Ga0157372_101917532 479
93 3300013308 Ga0157375_10026531 Ga0157375_100265312 479
94 3300014497 Ga0182008_10001765 Ga0182008_100017659 479
95 3300014497 Ga0182008_10002596 Ga0182008_100025966 479
96 3300015261 Ga0182006_1015906 Ga0182006_10159063 479
97 3300015262 Ga0182007_10000353 Ga0182007_1000035323 479
98 3300015265 Ga0182005_1000344 Ga0182005_100034424 479
99 3300015689 Ga0183360_10001 Ga0183360_100011643 479
100 3300017792 Ga0163161_10002464 Ga0163161_100024649 479
101 3300025245 Ga0207425_1000078 Ga0207425_100007858 479
102 3300025245 Ga0207425_1001471 Ga0207425_10014718 479
103 3300025258 Ga0209129_1000157 Ga0209129_100015735 479
104 3300025263 Ga0209565_1000022 Ga0209565_100002259 479
105 3300025273 Ga0209673_1000087 Ga0209673_1000087178 479
106 3300025284 Ga0209130_1006405 Ga0209130_10064053 479
107 3300025291 Ga0209675_1000060 Ga0209675_100006017 479
108 3300025291 Ga0209675_1012085 Ga0209675_10120852 479
109 3300025292 Ga0209676_1000976 Ga0209676_100097629 479
110 3300025292 Ga0209676_1002896 Ga0209676_10028967 479
111 3300025292 Ga0209676_1004112 Ga0209676_10041122 479
112 3300025292 Ga0209676_1005159 Ga0209676_10051593 479
113 3300025292 Ga0209676_1006425 Ga0209676_10064255 479
114 3300025292 Ga0209676_1007165 Ga0209676_10071652 479
115 3300025294 Ga0209025_1000005 Ga0209025_1000005640 479
116 3300025294 Ga0209025_1000054 Ga0209025_1000054225 479
117 3300025294 Ga0209025_1000888 Ga0209025_10008887 479
118 3300025294 Ga0209025_1007641 Ga0209025_10076414 479
119 3300025295 Ga0209564_1000302 Ga0209564_100030244 479
120 3300025297 Ga0209758_1000062 Ga0209758_1000062225 479
121 3300025297 Ga0209758_1032341 Ga0209758_10323412 479
122 3300025298 Ga0209050_1001760 Ga0209050_10017606 479
123 3300025298 Ga0209050_1002154 Ga0209050_100215411 479
124 3300025298 Ga0209050_1004098 Ga0209050_10040985 479
125 3300025299 Ga0209256_1001644 Ga0209256_100164415 479
126 3300025299 Ga0209256_1003098 Ga0209256_10030988 479
127 3300025299 Ga0209256_1003127 Ga0209256_10031278 479
128 3300025299 Ga0209256_1003341 Ga0209256_10033415 479
129 3300025303 Ga0209051_1000606 Ga0209051_100060615 479
130 3300025303 Ga0209051_1003171 Ga0209051_100317111 479
131 3300025304 Ga0209257_1000014 Ga0209257_100001459 479
132 3300025304 Ga0209257_1000080 Ga0209257_1000080112 479
133 3300025304 Ga0209257_1000121 Ga0209257_1000121209 479
134 3300025304 Ga0209257_1000369 Ga0209257_100036921 479
135 3300025304 Ga0209257_1002588 Ga0209257_10025889 479
136 3300025304 Ga0209257_1003930 Ga0209257_10039309 479
137 3300025304 Ga0209257_1005504 Ga0209257_10055046 479
138 3300025304 Ga0209257_1005863 Ga0209257_10058636 479
139 3300025304 Ga0209257_1006948 Ga0209257_10069483 479
140 3300025735 Ga0207713_1007579 Ga0207713_10075796 479
141 3300025919 Ga0207657_10098343 Ga0207657_100983432 479
142 3300025919 Ga0207657_10099092 Ga0207657_100990921 479
143 3300025921 Ga0207652_10035867 Ga0207652_100358673 479
144 3300025923 Ga0207681_10013804 Ga0207681_100138043 479
145 3300025940 Ga0207691_10021853 Ga0207691_100218535 479
146 3300027312 Ga0209371_1000059 Ga0209371_1000059159 479
147 3300030500 Ga0268256_1000055 Ga0268256_100005540 479
148 3300030731 Ga0316177_1024351 Ga0316177_10243512 479
149 3300030742 Ga0316183_1073510 Ga0316183_10735102 479
150 3300031456 Ga0307513_10049645 Ga0307513_100496454 479
151 3300031548 Ga0307408_100020378 Ga0307408_1000203782 479
152 3300031824 Ga0307413_10004383 Ga0307413_100043834 479
153 3300031901 Ga0307406_10032912 Ga0307406_100329122 479
154 3300031901 Ga0307406_10112451 Ga0307406_101124512 479
155 3300032004 Ga0307414_10000472 Ga0307414_1000047210 479
156 3300032004 Ga0307414_10004214 Ga0307414_100042142 479
157 3300032005 Ga0307411_10026666 Ga0307411_100266662 479
158 3300037312 Ga0395899_0152824 Ga0395899_0152824_28_1470 479
159 3300037418 Ga0395900_0004118 Ga0395900_0004118_7521_8963 479
160 3300037418 Ga0395900_0243540 Ga0395900_0243540_111_1553 479
161 3300037466 Ga0395898_0114936 Ga0395898_0114936_706_2151 479
162 3300037471 Ga0395905_0000577 Ga0395905_0000577_12836_14278 479
163 3300037471 Ga0395905_0145441 Ga0395905_0145441_699_2141 479
164 3300037471 Ga0395905_0208344 Ga0395905_0208344_133_1578 479
165 3300038443 Ga0395901_0006121 Ga0395901_0006121_9335_10777 479
166 3300038705 Ga0237819_00252 Ga0237819_00252_3941_5380 479
167 3300041407 Ga0439447_005276 Ga0439447_005276_2134_3585 479
168 3300041413 Ga0439465_0009365 Ga0439465_0009365_896_2338 479
169 3300041451 Ga0451791_0800296 Ga0451791_0800296_714_2156 479
170 3300041453 Ga0451797_0224420 Ga0451797_0224420_27_1469 479
171 3300041494 Ga0451837_1464049 Ga0451837_1464049_1251_2699 479
172 3300041509 Ga0451843_0921354 Ga0451843_0921354_126_1571 479
173 3300041509 Ga0451843_1762778 Ga0451843_1762778_1113_2555 479
174 3300042006 Ga0439432_008935 Ga0439432_008935_1841_3283 479
175 3300042007 Ga0439449_0000062 Ga0439449_0000062_16098_17558 479
176 3300042007 Ga0439449_0006160 Ga0439449_0006160_1261_2700 479
177 3300042007 Ga0439449_0036884 Ga0439449_0036884_92_1534 479
178 3300042015 Ga0439462_0002149 Ga0439462_0002149_54_1496 479
179 3300042142 Ga0450905_004761 Ga0450905_004761_94_1533 479
180 3300042876 Ga0451577_0003011 Ga0451577_0003011_1921_3363 479
181 3300046507 Ga0495606_0054965 Ga0495606_0054965_317_1759 479
182 3300046512 Ga0495610_0010303 Ga0495610_0010303_1062_2504 479
183 3300046518 Ga0495631_0004930 Ga0495631_0004930_3295_4737 479
184 3300046522 Ga0495643_0003481 Ga0495643_0003481_4280_5719 479
185 3300046539 Ga0495621_0000373 Ga0495621_0000373_7024_8469 479
186 3300046539 Ga0495621_0029354 Ga0495621_0029354_102_1547 479
187 3300046558 Ga0495633_0021103 Ga0495633_0021103_1353_2792 479
188 3300046616 Ga0495668_0001767 Ga0495668_0001767_9659_11110 479
189 3300046810 Ga0495660_0038513 Ga0495660_0038513_341_1780 479
190 3300047318 Ga0495636_0000522 Ga0495636_0000522_971_2413 479
191 3300047318 Ga0495636_0035597 Ga0495636_0035597_412_1860 479
192 3300047320 Ga0495672_0000455 Ga0495672_0000455_5932_7371 479
193 3300047445 Ga0495677_0031382 Ga0495677_0031382_138_1583 479
194 3300047472 Ga0495686_0010033 Ga0495686_0010033_2838_4277 479
195 3300048908 Ga0496105_0017638 Ga0496105_0017638_2743_4182 479
196 3300048912 Ga0496109_0090784 Ga0496109_0090784_750_2192 479
197 3300048919 Ga0496116_0009818 Ga0496116_0009818_3755_5194 479
198 3300048920 Ga0496117_0006203 Ga0496117_0006203_6482_7921 479
199 3300048920 Ga0496117_0013334 Ga0496117_0013334_2183_3622 479
200 3300048921 Ga0496118_0006389 Ga0496118_0006389_5943_7382 479
201 3300048922 Ga0496119_0000851 Ga0496119_0000851_33026_34465 479
202 3300048923 Ga0496120_0001387 Ga0496120_0001387_22159_23598 479
203 3300048924 Ga0496121_0011918 Ga0496121_0011918_5202_6641 479
204 3300048924 Ga0496121_0031203 Ga0496121_0031203_2751_4190 479
205 3300048924 Ga0496121_0038544 Ga0496121_0038544_2415_3854 479
206 3300048925 Ga0496122_0012114 Ga0496122_0012114_4147_5586 479
207 3300048925 Ga0496122_0018868 Ga0496122_0018868_2153_3592 479
208 3300048925 Ga0496122_0034021 Ga0496122_0034021_1448_2890 479
209 3300048925 Ga0496122_0044461 Ga0496122_0044461_789_2231 479
210 3300048926 Ga0496123_0005952 Ga0496123_0005952_5226_6668 479
211 3300048926 Ga0496123_0011606 Ga0496123_0011606_2878_4317 479
212 3300048926 Ga0496123_0024153 Ga0496123_0024153_1157_2596 479
213 3300048926 Ga0496123_0041202 Ga0496123_0041202_299_1738 479
214 3300048926 Ga0496123_0101555 Ga0496123_0101555_83_1525 479
215 3300048927 Ga0496124_0000009 Ga0496124_0000009_524819_526258 479
216 3300048927 Ga0496124_0009017 Ga0496124_0009017_5544_6983 479
217 3300048927 Ga0496124_0022121 Ga0496124_0022121_2106_3545 479
218 3300048927 Ga0496124_0032020 Ga0496124_0032020_3189_4628 479
219 3300048927 Ga0496124_0049394 Ga0496124_0049394_1383_2822 479
220 3300048927 Ga0496124_0076108 Ga0496124_0076108_1264_2703 479
221 3300048928 Ga0496125_0008250 Ga0496125_0008250_4143_5582 479
222 3300048928 Ga0496125_0009310 Ga0496125_0009310_5144_6583 479
223 3300048928 Ga0496125_0014372 Ga0496125_0014372_3830_5269 479
224 3300048928 Ga0496125_0023264 Ga0496125_0023264_3878_5317 479
225 3300048929 Ga0496126_0010449 Ga0496126_0010449_3494_4933 479
226 3300048929 Ga0496126_0026947 Ga0496126_0026947_2827_4269 479
227 3300049569 Ga0501032_0032486 Ga0501032_0032486_483_1928 479
228 3300049571 Ga0501034_0005495 Ga0501034_0005495_7322_8767 479
229 3300049571 Ga0501034_0044199 Ga0501034_0044199_224_1669 479
230 3300049572 Ga0501036_0010334 Ga0501036_0010334_1757_3202 479
231 3300049573 Ga0501037_0009364 Ga0501037_0009364_2422_3867 479
232 3300049574 Ga0501038_0004661 Ga0501038_0004661_6774_8219 479
233 3300049575 Ga0501039_0009705 Ga0501039_0009705_4432_5877 479
234 3300049579 Ga0501043_0144402 Ga0501043_0144402_314_1759 479
235 3300049586 Ga0501070_0012941 Ga0501070_0012941_5405_6850 479
236 3300049742 Ga0501080_0011403 Ga0501080_0011403_4447_5892 479
237 3300049772 Ga0501275_000214 Ga0501275_000214_1178_2620 479
238 3300049823 Ga0501044_0015743 Ga0501044_0015743_2686_4131 479
239 3300050491 nmdc:mga00v17_11438_c1 nmdc:mga00v17_11438_c1_279_1718 479
240 3300050491 nmdc:mga00v17_53355_c1 nmdc:mga00v17_53355_c1_383_1855 479
241 3300050491 nmdc:mga00v17_88920_c1 nmdc:mga00v17_88920_c1_237_1709 479
242 iso_pu_bacteria 8003014200 8003016099 479

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08411

Exonuc_X-T_C

Exonuclease C-terminal

222

490

0.99

PF00929

RNase_T

Exonuclease

22

204

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
4js4-assembly3.cif.gz_A crystal structure of e. coli exonuclease i in complex with a da16 oligonucleotide 0.9688 3 475
4js4-assembly3.cif.gz_B crystal structure of e. coli exonuclease i in complex with a da16 oligonucleotide 0.9684 3 475
4jrq-assembly3.cif.gz_B crystal structure of e. coli exonuclease i in complex with a 5cy-da13 oligonucleotide 0.9683 3 475
4rg8-assembly1.cif.gz_A structural and biochemical studies of a moderately thermophilic exonuclease i from methylocaldum szegediense 0.968 4 475
4hcc-assembly2.cif.gz_B the zinc ion bound form of crystal structure of e.coli exoi-ssdna complex 0.9675 3 475
ID Description Score Start End Superfamily
4hcbA01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9633 1 195 3.30.420.10
4hcbA01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9583 1 195 3.30.420.10
4rg8A02 Alpha Beta;2-Layer Sandwich;PX Domain;Exonuclease ExoI, domain 2 0.9462 209 347 3.30.1520.20
3c94A02 Alpha Beta;2-Layer Sandwich;PX Domain;Exonuclease ExoI, domain 2 0.9397 209 347 3.30.1520.20
4rg8A02 Alpha Beta;2-Layer Sandwich;PX Domain;Exonuclease ExoI, domain 2 0.9269 209 347 3.30.1520.20
ID Description Score Start End GO Terms
AF-A0A5C7RAD1-F1-model_v4 Exodeoxyribonuclease I (EC 3.1.11.1) (DNA deoxyribophosphodiesterase) 0.9956 1 347 GO:0000175
GO:0003677
GO:0006281
GO:0008310
AF-A0A6C8WY42-F1-model_v4 deleted 0.9951 1 339
AF-A0A3C0X4B1-F1-model_v4 deleted 0.9942 1 92
AF-A0A3D4TRF1-F1-model_v4 Exodeoxyribonuclease I (EC 3.1.11.1) 0.993 1 479 GO:0000175
GO:0003677
GO:0006281
GO:0008310
GO:0046872
AF-A0A356JHC0-F1-model_v4 deleted 0.993 1 398

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Predicted Structure (AlphaFold2)

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