F352676

General Info

Members Datasets Scaffolds Average Seq Length
240 169 219 578

Family's Representative Sequence

Representative Sequence 3300005548|Ga0070665_100019091|Ga0070665_1000190919
Length 629
Sequence MPGRIPEQFVDDLLARVDIVDVIQERVPLKKAGRDWSARCPFHDERSPSFTVSPAKQFYHCFGCGAHGSAIGFLMNYDRLEFPDAVEELANRLGLKVPYEGGREAPREDSSDLYNLLEAAAAFYRRQLGENAHASAYFAERGLDEKTLARFNLGYAPDAWDALKNALGTSAPRIALLEKAGMLTSGERGSKYDRFRKRVMFPILDRRGRTIAFGGRIIPSDRPDRENQNAGVHARTSQQDATPKEASDKAEGPKYLNSPETPLFHKGRELFGLWQVREAHTKIPRLIVVEGYMDVISLHQYGVPQAVATLGTATTRDHAEILFRQCADVYFCFDGDRAGRQAAWRAVESVLPRMRDGRQALFLFLPDGEDPDSLVRKEGLAGFEQRLKDATPLSEFFFAEIGKDVNLASLDGKARLAERARPLLAQIPDGAFRDLMLAELDKSTGVRVQVAAAPTDANTRSKPARPQQRSLVRAAITLLVQRPALALALDPPWSFAELRQPGIPLLVELIALCRARTNLMPASLLEHFAEREEAKALHKLAVADFPGGESEARAEFLDAVLQLERQTMQQRIDDFTAKNGEGTITEAERGELRSLLDRKRRVDALLRARPEAGSVRDVAAELRALLAGG

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2547132130 Stenotrophomonas maltophilia RR-10 Isolate Unclassified
3 2643221579 Pseudoxanthomonas sp. Root630 Isolate Unclassified
4 2643221581 Pseudoxanthomonas sp. Root65 Isolate Unclassified
5 2816332141 Stenotrophomonas muris 1190 (v2) (version 2) Isolate Unclassified
6 2842391507 Stenotrophomonas maltophilia SEMIA 4027 Isolate Nodule
7 2842757796 Stenotrophomonas sp. R-72406 Isolate Unclassified
8 2852649853 Stenotrophomonas sp. JAI102 Isolate Rhizosphere
9 2874220319 Stenotrophomonas maltophilia PS5 Isolate Unclassified
10 2919089067 Stenotrophomonas sp. 1337 Isolate Rhizosphere
11 2919134579 Stenotrophomonas geniculata 1733 Isolate Rhizosphere
12 2919513703 Luteimonas sp. 3794 Isolate Unclassified
13 2919675420 Luteimonas terrae 4099 Isolate Unclassified
14 2923516293 Pseudoxanthomonas mexicana SLBN-89 Isolate Rhizosphere
15 2928496128 Stenotrophomonas indicatrix 1163 Isolate Unclassified
16 2931380184 Stenotrophomonas sp. DR822 Isolate Rhizosphere
17 2937610967 Stenotrophomonas maltophilia EP20 Isolate Unclassified
18 2939626828 Stenotrophomonas sp. 2694 Isolate Rhizosphere
19 2941475908 Stenotrophomonas rhizophila 2680 Isolate Rhizosphere
20 2961047084 Stenotrophomonas maltophilia EP5 Isolate Unclassified
21 2961064222 Stenotrophomonas maltophilia EP13 Isolate Unclassified
22 2987605356 Stenotrophomonas sp. ATCM1_4 Isolate Unclassified
23 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
24 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
25 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
26 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
27 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
28 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
29 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
30 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
31 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
32 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
33 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
34 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
35 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
36 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
37 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
38 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
39 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
40 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
41 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
42 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
43 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
44 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
45 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
46 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
47 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
48 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
49 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
50 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
51 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
52 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
53 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
54 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
55 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
56 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
57 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
58 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
59 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
60 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
61 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
62 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
63 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
64 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
65 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
66 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
67 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
68 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
69 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
70 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
71 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
72 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
73 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
74 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
75 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
77 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
78 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
107 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
110 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
111 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
112 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
113 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
114 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
115 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
116 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
117 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
118 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
119 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
120 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
121 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
122 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
123 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
124 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
125 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
126 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
127 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
128 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
129 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
130 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
131 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
132 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
133 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
134 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
135 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
136 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
137 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
138 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
139 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
140 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
141 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
142 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
143 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
144 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
146 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
147 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
148 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
150 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
151 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
152 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
153 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
154 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
155 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
156 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
157 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
158 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
159 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
160 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
161 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
162 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
163 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
164 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
165 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
166 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
167 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
168 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
169 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.83
Metatranscriptomes 0.42
Isolates 8.75

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.17
Nodule 0.42
Rhizoplane 2.08
Rhizosphere 75.42
Stem 0
Stem Tuber 0
Unclassified 12.92

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_80748 2162886007 Bacteria 6004
2 JGI25152J39213_1000039 3300002773 Bacteria 89573
3 JGI25150J39212_1000422 3300002774 Bacteria 19529
4 JGI25151J46595_10000008 3300003187 Bacteria 334180
5 JGI25151J46595_10000154 3300003187 Bacteria 89582
6 JGI25153J46596_10000120 3300003215 Bacteria 89582
7 Ga0055536_1008496 3300003781 Bacteria 4404
8 Ga0055530_10007506 3300003791 Bacteria 4574
9 Ga0065704_10071210 3300005289 Bacteria 12483
10 Ga0070666_10026342 3300005335 Bacteria 3797
11 Ga0070668_100003090 3300005347 Bacteria 12302
12 Ga0070668_100049781 3300005347 Bacteria 3224
13 Ga0070673_100067342 3300005364 Bacteria 2863
14 Ga0070667_100000310 3300005367 Bacteria 54608
15 Ga0070663_100000611 3300005455 Bacteria 19137
16 Ga0070681_10098350 3300005458 Bacteria 2872
17 Ga0068867_100029575 3300005459 Bacteria 3948
18 Ga0068853_100036495 3300005539 Bacteria 4181
19 Ga0068853_100043192 3300005539 Bacteria 3856
20 Ga0070672_100068946 3300005543 Bacteria 2806
21 Ga0070672_100072664 3300005543 Bacteria 2739
22 Ga0070693_100001781 3300005547 Bacteria 9813
23 Ga0070693_100029581 3300005547 Bacteria 2989
24 Ga0070665_100000126 3300005548 Bacteria 146495
25 Ga0070665_100018013 3300005548 Bacteria 7090
26 Ga0070665_100019091 3300005548 Bacteria 6877
27 Ga0070665_100052692 3300005548 Bacteria 4080
28 Ga0068857_100043132 3300005577 Bacteria 4001
29 Ga0068856_100023312 3300005614 Bacteria 6018
30 Ga0068852_100003259 3300005616 Bacteria 11335
31 Ga0068859_100000180 3300005617 Bacteria 61976
32 Ga0068861_100029356 3300005719 Bacteria 4023
33 Ga0068863_100112200 3300005841 Bacteria 2596
34 Ga0068863_100151007 3300005841 Bacteria 2222
35 Ga0068860_100012220 3300005843 Bacteria 8461
36 Ga0068860_100029318 3300005843 Bacteria 5292
37 Ga0068860_100047660 3300005843 Bacteria 4084
38 Ga0068862_100001242 3300005844 Bacteria 24005
39 Ga0068862_100067422 3300005844 Bacteria 3085
40 Ga0081540_1001477 3300005983 Bacteria 20289
41 Ga0081539_10016051 3300005985 Bacteria 5385
42 Ga0097621_100034550 3300006237 Bacteria 4034
43 Ga0068871_100023826 3300006358 Bacteria 4741
44 Ga0097620_100000180 3300006931 Bacteria 61976
45 Ga0105240_10119405 3300009093 Bacteria 3176
46 Ga0105241_10023156 3300009174 Bacteria 4604
47 Ga0105242_10003652 3300009176 Bacteria 11972
48 Ga0105248_10000342 3300009177 Bacteria 54567
49 Ga0105248_10098971 3300009177 Bacteria 3286
50 Ga0105248_10105508 3300009177 Bacteria 3177
51 Ga0105237_10002747 3300009545 Bacteria 21446
52 Ga0105238_10015949 3300009551 Bacteria 7602
53 Ga0105249_10000645 3300009553 Bacteria 31786
54 Ga0105249_10149874 3300009553 Bacteria 2245
55 Ga0105239_10001838 3300010375 Bacteria 27784
56 Ga0105239_10006301 3300010375 Bacteria 13797
57 Ga0105239_10018143 3300010375 Bacteria 7779
58 Ga0157370_10021483 3300013104 Bacteria 6431
59 Ga0157369_10000021 3300013105 Bacteria 239073
60 Ga0157369_10081695 3300013105 Bacteria 3458
61 Ga0157378_10050882 3300013297 Bacteria 3686
62 Ga0163162_10000014 3300013306 Bacteria 268371
63 Ga0157372_10002769 3300013307 Bacteria 18939
64 Ga0157372_10046933 3300013307 Bacteria 4797
65 Ga0157375_10000281 3300013308 Bacteria 46431
66 Ga0163163_10000175 3300014325 Bacteria 66869
67 Ga0163163_10023019 3300014325 Bacteria 5907
68 Ga0182008_10001829 3300014497 Bacteria 13882
69 Ga0157379_10004627 3300014968 Bacteria 11808
70 Ga0157376_10008527 3300014969 Bacteria 7402
71 Ga0182007_10000025 3300015262 Bacteria 172058
72 Ga0207425_1000074 3300025245 Bacteria 108738
73 Ga0209129_1000150 3300025258 Bacteria 113886
74 Ga0209676_1000307 3300025292 Bacteria 96239
75 Ga0209025_1000048 3300025294 Bacteria 335574
76 Ga0209758_1000056 3300025297 Bacteria 335574
77 Ga0209050_1000670 3300025298 Bacteria 51926
78 Ga0209257_1000587 3300025304 Bacteria 60909
79 Ga0207680_10000406 3300025903 Bacteria 20582
80 Ga0207680_10035545 3300025903 Bacteria 2861
81 Ga0207647_10002210 3300025904 Bacteria 14828
82 Ga0207695_10000692 3300025913 Bacteria 66089
83 Ga0207671_10009199 3300025914 Bacteria 8287
84 Ga0207649_10029285 3300025920 Bacteria 3251
85 Ga0207694_10005041 3300025924 Bacteria 10217
86 Ga0207650_10061868 3300025925 Bacteria 2796
87 Ga0207686_10005792 3300025934 Bacteria 6629
88 Ga0207709_10002055 3300025935 Bacteria 13012
89 Ga0207704_10002469 3300025938 Bacteria 8327
90 Ga0207691_10040933 3300025940 Bacteria 4280
91 Ga0207711_10007827 3300025941 Bacteria 8932
92 Ga0207667_10066552 3300025949 Bacteria 3755
93 Ga0207712_10000198 3300025961 Bacteria 60986
94 Ga0207668_10011979 3300025972 Bacteria 5292
95 Ga0207640_10023127 3300025981 Bacteria 3731
96 Ga0207658_10000298 3300025986 Bacteria 51778
97 Ga0207658_10020023 3300025986 Bacteria 4631
98 Ga0207658_10080351 3300025986 Bacteria 2497
99 Ga0207639_10000606 3300026041 Bacteria 24698
100 Ga0207639_10036670 3300026041 Bacteria 3635
101 Ga0207639_10054434 3300026041 Bacteria 3058
102 Ga0207639_10121787 3300026041 Bacteria 2144
103 Ga0207678_10028070 3300026067 Bacteria 4914
104 Ga0207678_10083824 3300026067 Bacteria 2726
105 Ga0207702_10011627 3300026078 Bacteria 7334
106 Ga0207702_10040360 3300026078 Bacteria 3913
107 Ga0207648_10005413 3300026089 Bacteria 12862
108 Ga0207676_10011830 3300026095 Bacteria 6243
109 Ga0207674_10003335 3300026116 Bacteria 19740
110 Ga0207675_100059736 3300026118 Bacteria 3558
111 Ga0207683_10089140 3300026121 Bacteria 2745
112 Ga0207698_10002294 3300026142 Bacteria 11332
113 Ga0209371_1000028 3300027312 Bacteria 429688
114 Ga0268266_10000001 3300028379 Bacteria 4040580
115 Ga0268266_10072577 3300028379 Bacteria 2985
116 Ga0268265_10001651 3300028380 Bacteria 18273
117 Ga0268265_10047960 3300028380 Bacteria 3204
118 Ga0268256_1000030 3300030500 Bacteria 429688
119 Ga0307508_10012088 3300031616 Bacteria 7897
120 Ga0307516_10079541 3300031730 Bacteria 3123
121 Ga0307413_10101830 3300031824 Bacteria 1900
122 Ga0307414_10010457 3300032004 Bacteria 5385
123 Ga0316593_10009570 3300032168 Bacteria 2743
124 Ga0316574_0006186 3300035398 Bacteria 6447
125 Ga0316584_0023076 3300036712 Bacteria 4544
126 Ga0237819_00061 3300038705 Bacteria 38106
127 Ga0439465_0000127 3300041413 Bacteria 18321
128 Ga0451802_0212968 3300041460 Bacteria 4737
129 Ga0451853_1315115 3300041512 Bacteria 2388
130 Ga0439445_0002162 3300042004 Bacteria 4354
131 Ga0439449_0000081 3300042007 Bacteria 30556
132 Ga0439449_0020757 3300042007 Bacteria 2461
133 Ga0466970_0000079 3300044765 Bacteria 39743
134 Ga0495582_0006713 3300046473 Bacteria 6396
135 Ga0495610_0051388 3300046512 Bacteria 2006
136 Ga0495587_0028508 3300046536 Bacteria 3395
137 Ga0495668_0003552 3300046616 Bacteria 11588
138 Ga0495635_0031337 3300046663 Bacteria 3692
139 Ga0495658_0001597 3300046683 Bacteria 11805
140 Ga0495686_0036125 3300047472 Bacteria 3171
141 Ga0495686_0061032 3300047472 Bacteria 2343
142 Ga0496104_0000045 3300048907 Bacteria 152445
143 Ga0496105_0000075 3300048908 Bacteria 75152
144 Ga0496114_0017823 3300048917 Bacteria 5739
145 Ga0496115_0000164 3300048918 Bacteria 62174
146 Ga0496116_0012013 3300048919 Bacteria 7108
147 Ga0496117_0013578 3300048920 Bacteria 7095
148 Ga0496118_0000182 3300048921 Bacteria 110967
149 Ga0496118_0000223 3300048921 Bacteria 99360
150 Ga0496118_0014100 3300048921 Bacteria 7499
151 Ga0496118_0022525 3300048921 Bacteria 5502
152 Ga0496119_0000303 3300048922 Bacteria 68844
153 Ga0496120_0000710 3300048923 Bacteria 48861
154 Ga0496122_0000178 3300048925 Bacteria 150162
155 Ga0496122_0000915 3300048925 Bacteria 54089
156 Ga0496123_0000635 3300048926 Bacteria 58668
157 Ga0496123_0016403 3300048926 Bacteria 6018
158 Ga0496126_0000683 3300048929 Bacteria 62337
159 Ga0496126_0008037 3300048929 Bacteria 11443
160 Ga0501031_0004370 3300049568 Bacteria 9153
161 Ga0501032_0007767 3300049569 Bacteria 7821
162 Ga0501032_0028474 3300049569 Bacteria 3839
163 Ga0501033_0000369 3300049570 Bacteria 43184
164 Ga0501033_0026424 3300049570 Bacteria 4369
165 Ga0501033_0046734 3300049570 Bacteria 3218
166 Ga0501034_0000309 3300049571 Bacteria 86590
167 Ga0501034_0002578 3300049571 Bacteria 21567
168 Ga0501034_0004045 3300049571 Bacteria 16451
169 Ga0501034_0008321 3300049571 Bacteria 10977
170 Ga0501034_0014617 3300049571 Bacteria 8083
171 Ga0501036_0012821 3300049572 Bacteria 6956
172 Ga0501036_0034473 3300049572 Bacteria 4282
173 Ga0501037_0000614 3300049573 Bacteria 27666
174 Ga0501037_0001742 3300049573 Bacteria 15796
175 Ga0501037_0002504 3300049573 Bacteria 13264
176 Ga0501037_0042816 3300049573 Bacteria 3328
177 Ga0501038_0002167 3300049574 Bacteria 18252
178 Ga0501038_0019217 3300049574 Bacteria 6161
179 Ga0501038_0084627 3300049574 Bacteria 2668
180 Ga0501043_0007969 3300049579 Bacteria 8366
181 Ga0501043_0010954 3300049579 Bacteria 7104
182 Ga0501043_0082551 3300049579 Bacteria 2526
183 Ga0501046_0002126 3300049580 Bacteria 18729
184 Ga0501046_0011510 3300049580 Bacteria 7563
185 Ga0501047_0000408 3300049581 Bacteria 48197
186 Ga0501047_0010254 3300049581 Bacteria 8864
187 Ga0501047_0269324 3300049581 Bacteria 1550
188 Ga0501048_0012450 3300049582 Bacteria 6328
189 Ga0501048_0029233 3300049582 Bacteria 3998
190 Ga0501067_0000218 3300049583 Bacteria 32000
191 Ga0501069_0006851 3300049585 Bacteria 5960
192 Ga0501070_0002963 3300049586 Bacteria 14790
193 Ga0501070_0085071 3300049586 Bacteria 2618
194 Ga0501070_0175872 3300049586 Bacteria 1762
195 Ga0501073_0011794 3300049589 Bacteria 6379
196 Ga0501074_0003017 3300049590 Bacteria 11855
197 Ga0501074_0021071 3300049590 Bacteria 4734
198 Ga0501080_0001498 3300049742 Bacteria 19702
199 Ga0501080_0004479 3300049742 Bacteria 12437
200 Ga0501080_0032477 3300049742 Bacteria 4869
201 Ga0501080_0053822 3300049742 Bacteria 3748
202 Ga0501080_0113728 3300049742 Bacteria 2509
203 Ga0501080_0155443 3300049742 Bacteria 2113
204 Ga0501083_0000615 3300049744 Bacteria 22942
205 Ga0501035_0031986 3300049822 Bacteria 4791
206 Ga0501035_0121155 3300049822 Bacteria 2286
207 Ga0501044_0000852 3300049823 Bacteria 36664
208 Ga0501044_0027547 3300049823 Bacteria 6004
209 Ga0501044_0028290 3300049823 Bacteria 5916
210 Ga0500610_0000295 3300053079 Bacteria 15072
211 Ga0500643_008082 3300053087 Bacteria 4168
212 Ga0500651_0000508 3300053093 Bacteria 20161
213 Ga0500651_0006679 3300053093 Bacteria 6671
214 Ga0500651_0059010 3300053093 Bacteria 2399
215 Ga0500597_000054 3300053120 Bacteria 22971
216 Ga0500559_0015362 3300053136 Bacteria 3233
217 Ga0500568_0000581 3300053139 Bacteria 26570
218 Ga0501082_0001378 3300060353 Bacteria 21377
219 Ga0501082_0024366 3300060353 Bacteria 5217

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049586 Ga0501070_0175872 Ga0501070_0175872_252_1751 460
2 3300049581 Ga0501047_0269324 Ga0501047_0269324_19_1521 464
3 3300005843 Ga0068860_100047660 Ga0068860_1000476602 500
4 3300009177 Ga0105248_10105508 Ga0105248_101055082 500
5 3300013297 Ga0157378_10050882 Ga0157378_100508822 523
6 3300014325 Ga0163163_10000175 Ga0163163_1000017511 523
7 3300025903 Ga0207680_10000406 Ga0207680_1000040613 523
8 3300013307 Ga0157372_10002769 Ga0157372_100027698 537
9 3300025913 Ga0207695_10000692 Ga0207695_1000069211 537
10 3300025920 Ga0207649_10029285 Ga0207649_100292852 537
11 3300025981 Ga0207640_10023127 Ga0207640_100231272 537
12 3300026078 Ga0207702_10040360 Ga0207702_100403602 537
13 3300005844 Ga0068862_100067422 Ga0068862_1000674224 539
14 3300028380 Ga0268265_10047960 Ga0268265_100479602 539
15 3300014968 Ga0157379_10004627 Ga0157379_1000462710 541
16 3300026095 Ga0207676_10011830 Ga0207676_100118302 541
17 3300046512 Ga0495610_0051388 Ga0495610_0051388_169_1932 544
18 3300005364 Ga0070673_100067342 Ga0070673_1000673423 545
19 3300005543 Ga0070672_100068946 Ga0070672_1000689463 545
20 3300005548 Ga0070665_100018013 Ga0070665_1000180135 545
21 3300025940 Ga0207691_10040933 Ga0207691_100409333 545
22 3300031616 Ga0307508_10012088 Ga0307508_1001208811 546
23 3300013306 Ga0163162_10000014 Ga0163162_10000014139 547
24 3300048925 Ga0496122_0000915 Ga0496122_0000915_8285_10021 547
25 3300048926 Ga0496123_0000635 Ga0496123_0000635_44131_45867 547
26 3300035398 Ga0316574_0006186 Ga0316574_0006186_4034_5806 548
27 3300047472 Ga0495686_0061032 Ga0495686_0061032_388_2184 548
28 3300026067 Ga0207678_10083824 Ga0207678_100838241 549
29 3300009176 Ga0105242_10003652 Ga0105242_100036529 550
30 3300013308 Ga0157375_10000281 Ga0157375_1000028114 550
31 3300025934 Ga0207686_10005792 Ga0207686_100057924 550
32 3300025938 Ga0207704_10002469 Ga0207704_100024697 550
33 3300031730 Ga0307516_10079541 Ga0307516_100795411 551
34 3300013105 Ga0157369_10000021 Ga0157369_10000021175 552
35 3300025914 Ga0207671_10009199 Ga0207671_100091997 552
36 3300025924 Ga0207694_10005041 Ga0207694_100050417 552
37 3300031824 Ga0307413_10101830 Ga0307413_101018301 552
38 3300032168 Ga0316593_10009570 Ga0316593_100095702 554
39 3300046616 Ga0495668_0003552 Ga0495668_0003552_5811_7553 554
40 3300036712 Ga0316584_0023076 Ga0316584_0023076_2328_4064 556
41 3300049571 Ga0501034_0000309 Ga0501034_0000309_7374_9104 556
42 3300005548 Ga0070665_100052692 Ga0070665_1000526925 557
43 3300049572 Ga0501036_0012821 Ga0501036_0012821_4575_6362 557
44 3300049573 Ga0501037_0001742 Ga0501037_0001742_10089_11876 557
45 3300049574 Ga0501038_0019217 Ga0501038_0019217_557_2344 557
46 3300049579 Ga0501043_0010954 Ga0501043_0010954_783_2570 557
47 3300049589 Ga0501073_0011794 Ga0501073_0011794_2329_4116 557
48 3300049742 Ga0501080_0001498 Ga0501080_0001498_14336_16123 557
49 3300049822 Ga0501035_0031986 Ga0501035_0031986_600_2387 557
50 3300049823 Ga0501044_0027547 Ga0501044_0027547_2082_3869 557
51 3300041413 Ga0439465_0000127 Ga0439465_0000127_11609_13342 558
52 3300042007 Ga0439449_0000081 Ga0439449_0000081_26159_27892 559
53 3300010375 Ga0105239_10001838 Ga0105239_100018383 560
54 3300026041 Ga0207639_10054434 Ga0207639_100544342 560
55 3300048918 Ga0496115_0000164 Ga0496115_0000164_60265_61977 560
56 3300048929 Ga0496126_0000683 Ga0496126_0000683_360_2072 560
57 3300003791 Ga0055530_10007506 Ga0055530_100075062 561
58 3300005843 Ga0068860_100029318 Ga0068860_1000293182 561
59 3300009177 Ga0105248_10098971 Ga0105248_100989712 561
60 3300010375 Ga0105239_10006301 Ga0105239_1000630110 561
61 3300014325 Ga0163163_10023019 Ga0163163_100230193 561
62 3300025292 Ga0209676_1000307 Ga0209676_100030769 561
63 3300025298 Ga0209050_1000670 Ga0209050_100067041 561
64 3300025304 Ga0209257_1000587 Ga0209257_10005877 561
65 3300038705 Ga0237819_00061 Ga0237819_00061_32988_34724 561
66 3300048921 Ga0496118_0014100 Ga0496118_0014100_195_1910 561
67 3300049569 Ga0501032_0028474 Ga0501032_0028474_180_1919 561
68 3300049571 Ga0501034_0002578 Ga0501034_0002578_10832_12571 561
69 3300049573 Ga0501037_0002504 Ga0501037_0002504_5589_7307 561
70 3300049574 Ga0501038_0084627 Ga0501038_0084627_843_2582 561
71 3300049581 Ga0501047_0000408 Ga0501047_0000408_35021_36760 561
72 3300049583 Ga0501067_0000218 Ga0501067_0000218_23783_25522 561
73 3300049585 Ga0501069_0006851 Ga0501069_0006851_2367_4106 561
74 3300049586 Ga0501070_0002963 Ga0501070_0002963_1702_3441 561
75 3300049742 Ga0501080_0004479 Ga0501080_0004479_1702_3441 561
76 3300049744 Ga0501083_0000615 Ga0501083_0000615_3598_5337 561
77 3300049823 Ga0501044_0000852 Ga0501044_0000852_5958_7697 561
78 3300053093 Ga0500651_0059010 Ga0500651_0059010_249_2054 561
79 3300060353 Ga0501082_0024366 Ga0501082_0024366_3193_4932 561
80 3300025904 Ga0207647_10002210 Ga0207647_100022106 562
81 3300026116 Ga0207674_10003335 Ga0207674_100033355 562
82 3300005459 Ga0068867_100029575 Ga0068867_1000295754 563
83 3300009553 Ga0105249_10149874 Ga0105249_101498741 563
84 3300026089 Ga0207648_10005413 Ga0207648_1000541313 563
85 3300041512 Ga0451853_1315115 Ga0451853_1315115_624_2360 563
86 3300005543 Ga0070672_100072664 Ga0070672_1000726643 564
87 3300005983 Ga0081540_1001477 Ga0081540_10014774 564
88 3300009174 Ga0105241_10023156 Ga0105241_100231567 564
89 3300013104 Ga0157370_10021483 Ga0157370_100214832 564
90 3300013307 Ga0157372_10046933 Ga0157372_100469333 564
91 3300049571 Ga0501034_0008321 Ga0501034_0008321_8468_10201 564
92 3300049571 Ga0501034_0014617 Ga0501034_0014617_5312_7045 564
93 3300049572 Ga0501036_0034473 Ga0501036_0034473_2279_4012 564
94 3300049573 Ga0501037_0042816 Ga0501037_0042816_1150_2883 564
95 3300049579 Ga0501043_0082551 Ga0501043_0082551_704_2437 564
96 3300049581 Ga0501047_0010254 Ga0501047_0010254_6851_8596 564
97 3300049590 Ga0501074_0003017 Ga0501074_0003017_8060_9793 564
98 3300049590 Ga0501074_0021071 Ga0501074_0021071_2930_4663 564
99 3300049742 Ga0501080_0053822 Ga0501080_0053822_791_2524 564
100 3300053136 Ga0500559_0015362 Ga0500559_0015362_674_2419 564
101 iso_pu_bacteria 2937610967 2937612996 564
102 3300005617 Ga0068859_100000180 Ga0068859_10000018012 565
103 3300005841 Ga0068863_100112200 Ga0068863_1001122002 565
104 3300005841 Ga0068863_100151007 Ga0068863_1001510071 565
105 3300005844 Ga0068862_100001242 Ga0068862_10000124212 565
106 3300006931 Ga0097620_100000180 Ga0097620_10000018012 565
107 3300009551 Ga0105238_10015949 Ga0105238_100159497 565
108 3300014969 Ga0157376_10008527 Ga0157376_100085272 565
109 3300028380 Ga0268265_10001651 Ga0268265_1000165111 565
110 iso_pu_bacteria 2852649853 2852653358 565
111 iso_pu_bacteria 2919675420 2919676021 565
112 iso_pu_bacteria 2941475908 2941477648 565
113 3300005539 Ga0068853_100043192 Ga0068853_1000431922 566
114 3300005547 Ga0070693_100029581 Ga0070693_1000295813 566
115 3300005548 Ga0070665_100000126 Ga0070665_10000012670 566
116 3300005577 Ga0068857_100043132 Ga0068857_1000431324 566
117 3300005843 Ga0068860_100012220 Ga0068860_1000122202 566
118 3300009545 Ga0105237_10002747 Ga0105237_1000274720 566
119 3300025986 Ga0207658_10020023 Ga0207658_100200233 566
120 3300026041 Ga0207639_10000606 Ga0207639_100006064 566
121 3300028379 Ga0268266_10000001 Ga0268266_10000001613 566
122 3300048921 Ga0496118_0000223 Ga0496118_0000223_7699_9480 566
123 3300005367 Ga0070667_100000310 Ga0070667_10000031026 567
124 3300005455 Ga0070663_100000611 Ga0070663_1000006114 567
125 3300005614 Ga0068856_100023312 Ga0068856_1000233124 567
126 3300005616 Ga0068852_100003259 Ga0068852_1000032592 567
127 3300009177 Ga0105248_10000342 Ga0105248_1000034214 567
128 3300009553 Ga0105249_10000645 Ga0105249_1000064516 567
129 3300025941 Ga0207711_10007827 Ga0207711_100078273 567
130 3300025961 Ga0207712_10000198 Ga0207712_100001985 567
131 3300025986 Ga0207658_10000298 Ga0207658_1000029831 567
132 3300026041 Ga0207639_10121787 Ga0207639_101217871 567
133 3300026067 Ga0207678_10028070 Ga0207678_100280702 567
134 3300026078 Ga0207702_10011627 Ga0207702_100116275 567
135 3300026142 Ga0207698_10002294 Ga0207698_100022941 567
136 3300032004 Ga0307414_10010457 Ga0307414_100104573 567
137 3300044765 Ga0466970_0000079 Ga0466970_0000079_26425_28203 567
138 3300048925 Ga0496122_0000178 Ga0496122_0000178_125292_127076 567
139 3300049570 Ga0501033_0000369 Ga0501033_0000369_8675_10411 567
140 3300049570 Ga0501033_0046734 Ga0501033_0046734_838_2574 567
141 3300049571 Ga0501034_0004045 Ga0501034_0004045_11715_13451 567
142 3300049580 Ga0501046_0011510 Ga0501046_0011510_5811_7532 567
143 3300049582 Ga0501048_0029233 Ga0501048_0029233_1994_3730 567
144 3300049586 Ga0501070_0085071 Ga0501070_0085071_85_1818 567
145 3300049742 Ga0501080_0113728 Ga0501080_0113728_513_2249 567
146 3300049742 Ga0501080_0155443 Ga0501080_0155443_340_2061 567
147 3300049822 Ga0501035_0121155 Ga0501035_0121155_221_1957 567
148 3300049823 Ga0501044_0028290 Ga0501044_0028290_1572_3305 567
149 3300053079 Ga0500610_0000295 Ga0500610_0000295_6415_8145 567
150 3300053087 Ga0500643_008082 Ga0500643_008082_240_2036 567
151 3300053093 Ga0500651_0006679 Ga0500651_0006679_181_1920 567
152 3300053120 Ga0500597_000054 Ga0500597_000054_16526_18322 567
153 3300060353 Ga0501082_0001378 Ga0501082_0001378_9205_10926 567
154 iso_pu_bacteria 2987605356 2987609135 567
155 3300005335 Ga0070666_10026342 Ga0070666_100263422 568
156 3300005458 Ga0070681_10098350 Ga0070681_100983503 568
157 3300005539 Ga0068853_100036495 Ga0068853_1000364952 568
158 3300005548 Ga0070665_100019091 Ga0070665_1000190919 568
159 3300005719 Ga0068861_100029356 Ga0068861_1000293562 568
160 3300010375 Ga0105239_10018143 Ga0105239_100181438 568
161 3300025903 Ga0207680_10035545 Ga0207680_100355451 568
162 3300025925 Ga0207650_10061868 Ga0207650_100618683 568
163 3300025949 Ga0207667_10066552 Ga0207667_100665521 568
164 3300025986 Ga0207658_10080351 Ga0207658_100803511 568
165 3300026041 Ga0207639_10036670 Ga0207639_100366702 568
166 3300026118 Ga0207675_100059736 Ga0207675_1000597362 568
167 3300028379 Ga0268266_10072577 Ga0268266_100725773 568
168 3300041460 Ga0451802_0212968 Ga0451802_0212968_1774_3675 568
169 3300046473 Ga0495582_0006713 Ga0495582_0006713_2665_4485 568
170 3300046536 Ga0495587_0028508 Ga0495587_0028508_1508_3307 568
171 3300046663 Ga0495635_0031337 Ga0495635_0031337_746_2566 568
172 3300046683 Ga0495658_0001597 Ga0495658_0001597_2671_4491 568
173 3300048921 Ga0496118_0000182 Ga0496118_0000182_22082_23899 568
174 3300049568 Ga0501031_0004370 Ga0501031_0004370_6493_8316 568
175 3300049569 Ga0501032_0007767 Ga0501032_0007767_2944_4767 568
176 3300049570 Ga0501033_0026424 Ga0501033_0026424_626_2449 568
177 3300049573 Ga0501037_0000614 Ga0501037_0000614_15861_17684 568
178 3300049574 Ga0501038_0002167 Ga0501038_0002167_3055_4878 568
179 3300049579 Ga0501043_0007969 Ga0501043_0007969_3914_5737 568
180 3300049580 Ga0501046_0002126 Ga0501046_0002126_15635_17458 568
181 3300049582 Ga0501048_0012450 Ga0501048_0012450_3399_5222 568
182 3300049742 Ga0501080_0032477 Ga0501080_0032477_62_1885 568
183 3300053093 Ga0500651_0000508 Ga0500651_0000508_2159_3925 568
184 3300053139 Ga0500568_0000581 Ga0500568_0000581_23181_24923 568
185 iso_pu_bacteria 2547132130 2547499565 568
186 iso_pu_bacteria 2643221579 2643907645 568
187 iso_pu_bacteria 2816332141 2816519957 568
188 iso_pu_bacteria 2842391507 2842395449 568
189 iso_pu_bacteria 2842757796 2842761114 568
190 iso_pu_bacteria 2874220319 2874224211 568
191 iso_pu_bacteria 2919089067 2919092112 568
192 iso_pu_bacteria 2919134579 2919135364 568
193 iso_pu_bacteria 2923516293 2923516555 568
194 iso_pu_bacteria 2928496128 2928498745 568
195 iso_pu_bacteria 2931380184 2931382385 568
196 iso_pu_bacteria 2939626828 2939629512 568
197 iso_pu_bacteria 2961047084 2961050975 568
198 iso_pu_bacteria 2961064222 2961065697 568
199 3300005347 Ga0070668_100049781 Ga0070668_1000497811 569
200 3300006237 Ga0097621_100034550 Ga0097621_1000345504 569
201 3300006358 Ga0068871_100023826 Ga0068871_1000238262 569
202 3300009093 Ga0105240_10119405 Ga0105240_101194053 569
203 3300014497 Ga0182008_10001829 Ga0182008_1000182914 569
204 3300015262 Ga0182007_10000025 Ga0182007_10000025135 569
205 3300026121 Ga0207683_10089140 Ga0207683_100891401 569
206 3300048907 Ga0496104_0000045 Ga0496104_0000045_137600_139498 569
207 3300048908 Ga0496105_0000075 Ga0496105_0000075_60235_62133 569
208 3300048920 Ga0496117_0013578 Ga0496117_0013578_2090_3820 569
209 3300048921 Ga0496118_0022525 Ga0496118_0022525_1956_3686 569
210 3300048922 Ga0496119_0000303 Ga0496119_0000303_57699_59435 569
211 3300048923 Ga0496120_0000710 Ga0496120_0000710_9364_11094 569
212 3300048926 Ga0496123_0016403 Ga0496123_0016403_4134_5864 569
213 3300005547 Ga0070693_100001781 Ga0070693_10000178110 570
214 3300042004 Ga0439445_0002162 Ga0439445_0002162_2006_3739 570
215 3300047472 Ga0495686_0036125 Ga0495686_0036125_413_2149 570
216 iso_pu_bacteria 2919513703 2919514205 570
217 3300002773 JGI25152J39213_1000039 JGI25152J39213_100003917 571
218 3300002774 JGI25150J39212_1000422 JGI25150J39212_10004226 571
219 3300003187 JGI25151J46595_10000154 JGI25151J46595_1000015467 571
220 3300003215 JGI25153J46596_10000120 JGI25153J46596_1000012067 571
221 3300025245 Ga0207425_1000074 Ga0207425_100007417 571
222 3300025258 Ga0209129_1000150 Ga0209129_100015017 571
223 3300025294 Ga0209025_1000048 Ga0209025_100004817 571
224 3300025297 Ga0209758_1000056 Ga0209758_100005617 571
225 3300003187 JGI25151J46595_10000008 JGI25151J46595_1000000847 572
226 3300003781 Ga0055536_1008496 Ga0055536_10084964 572
227 3300005347 Ga0070668_100003090 Ga0070668_10000309013 572
228 3300005985 Ga0081539_10016051 Ga0081539_100160515 572
229 3300013105 Ga0157369_10081695 Ga0157369_100816952 572
230 3300025935 Ga0207709_10002055 Ga0207709_100020555 572
231 3300025972 Ga0207668_10011979 Ga0207668_100119794 572
232 3300027312 Ga0209371_1000028 Ga0209371_100002828 572
233 3300030500 Ga0268256_1000030 Ga0268256_1000030365 572
234 3300042007 Ga0439449_0020757 Ga0439449_0020757_337_2112 572
235 3300048919 Ga0496116_0012013 Ga0496116_0012013_3556_5295 572
236 2162886007 SwRhRL2b_contig_80748 SwRhRL2b_0826.00003470 575
237 3300005289 Ga0065704_10071210 Ga0065704_1007121011 575
238 3300048917 Ga0496114_0017823 Ga0496114_0017823_3235_4974 575
239 3300048929 Ga0496126_0008037 Ga0496126_0008037_6443_8182 575
240 iso_pu_bacteria 2643221581 2643914096 575

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08278

DnaG_DnaB_bind

DNA primase DnaG DnaB-binding

472

595

0.98

PF01807

zf-CHC2

CHC2 zinc finger

5

102

0.97

PF08275

DNAG_N

DNA primase catalytic core, N-terminal domain

123

277

0.96

PF10410

DnaB_bind

DnaB-helicase binding domain of primase

394

449

0.96

PF13662

Toprim_4

Toprim domain

285

358

0.93

PF01751

Toprim

Toprim domain

285

362

0.92

PF13362

Toprim_3

Toprim domain

285

381

0.91

PF13155

Toprim_2

Toprim-like

287

375

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
1d0q-assembly1.cif.gz_B structure of the zinc-binding domain of bacillus stearothermophilus dna primase 0.9639 3 96
5vaz-assembly2.cif.gz_B crystal structure of a dna primase domain from pseudomonas aeruginosa 0.9564 112 417
1eqn-assembly4.cif.gz_D e.coli primase catalytic core 0.9476 112 416
1dde-assembly1.cif.gz_A structure of the dnag catalytic core 0.9472 112 418
3b39-assembly1.cif.gz_A structure of the dnag primase catalytic domain bound to ssdna 0.9426 106 416
ID Description Score Start End Superfamily
5vazA02 Alpha Beta;3-Layer(aba) Sandwich;Dna Topoisomerase Vi A Subunit; Chain: A, domain 2; 0.9672 237 362 3.40.1360.10
5vazB03 Mainly Alpha;Up-down Bundle;Pheromone ER-1;DnaG, RNA polymerase domain, helical bundle 0.9513 364 417 1.20.50.20
5vazA02 Alpha Beta;3-Layer(aba) Sandwich;Dna Topoisomerase Vi A Subunit; Chain: A, domain 2; 0.9452 237 362 3.40.1360.10
5vazA03 Mainly Alpha;Up-down Bundle;Pheromone ER-1;DnaG, RNA polymerase domain, helical bundle 0.9357 364 418 1.20.50.20
af_P9WNW1_1_101_3.90.580.10 Alpha Beta;Alpha-Beta Complex;DNA Primase; Chain A;Zinc finger, CHC2-type?domain 0.9331 1 95 3.90.580.10
ID Description Score Start End GO Terms
AF-A0A536T8N6-F1-model_v4 DNA primase 0.9946 5 99 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-A0A533ZZD2-F1-model_v4 Zinc finger CHC2-type domain-containing protein 0.9811 1 92 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-A0A831Y4Q6-F1-model_v4 Zinc finger CHC2-type domain-containing protein 0.9733 1 89 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-A0A3C1UF68-F1-model_v4 DNA primase 0.9711 5 79 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-W1XE62-F1-model_v4 DNA primase 0.9652 1 76 GO:0003677
GO:0003896
GO:0005737
GO:0008270

Feature Viewer

pLDDT pTM Quality
86.01 0.58 Medium
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Predicted Structure (AlphaFold2)

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