F351104

General Info

Members Datasets Scaffolds Average Seq Length
238 152 238 244

Family's Representative Sequence

Representative Sequence 3300031889|Ga0326468_10004248|Ga0326468_100042481
Length 272
Sequence VTSSTRTSSGQDTVASLRARLARLEREAASRERQLEAYASDLREVFKQERLRAQELRRSYKATVLALANAVEARDAYTGRHAQRVAAYGLRIAHAAGVAVDSQVEFGFLLHDVGKVAVPDAILFKPGPLTAGERALMTAHPTIGWEILRHVDFLDDAKTVVRHHHERWGGEGYPDGLAGEAIPLPARVFALADALDALTSDRPYREAVSWAKARETLRQDAGPHFAPAIVGAYDTVPDEASERLQAEVEIVTGVLAVTVMPALTVSPLSPIA

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
9 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
10 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
16 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
28 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
29 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
30 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
31 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
32 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
33 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
34 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
35 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
40 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
42 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
43 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
44 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
45 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
46 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
47 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
48 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
49 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
50 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
51 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
52 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
53 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
54 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
55 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
56 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
57 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
58 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
59 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
60 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
61 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
62 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
87 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
88 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
89 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
90 3300031889 Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Metagenome Rhizosphere
91 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
92 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
93 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
94 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
95 3300035092 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 Metagenome Rhizosphere
96 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
97 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
98 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
99 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
100 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
101 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
102 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
103 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
104 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
105 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
106 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
107 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
108 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
109 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
110 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
111 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
112 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
113 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
114 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
115 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
116 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
117 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
118 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
119 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
120 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
121 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
122 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
123 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
124 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
125 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
126 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
127 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
128 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
129 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
130 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
133 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
134 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
135 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
137 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
138 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
139 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
140 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
141 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
142 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
143 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
144 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
146 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
147 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
148 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
149 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
150 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
151 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
152 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.74
Metatranscriptomes 1.26
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.26
Nodule 0
Rhizoplane 7.56
Rhizosphere 80.25
Stem 0
Stem Tuber 0
Unclassified 10.92

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100089868 3300005329 Bacteria 2883
2 Ga0068869_100631873 3300005334 Bacteria 907
3 Ga0070680_100011130 3300005336 Bacteria 6955
4 Ga0070682_100036178 3300005337 Bacteria 3017
5 Ga0070682_100074666 3300005337 Bacteria 2178
6 Ga0068868_100020785 3300005338 Bacteria 4939
7 Ga0068868_100142806 3300005338 Bacteria 1967
8 Ga0070660_100037812 3300005339 Bacteria 3660
9 Ga0070689_100157722 3300005340 Bacteria 1833
10 Ga0070691_10086593 3300005341 Bacteria 1540
11 Ga0070692_10030646 3300005345 Bacteria 2691
12 Ga0070674_100180109 3300005356 Bacteria 1618
13 Ga0070659_100042892 3300005366 Bacteria 3537
14 Ga0070659_100132505 3300005366 Bacteria 2025
15 Ga0070714_100236145 3300005435 Bacteria 1686
16 Ga0070710_10000009 3300005437 Bacteria 165863
17 Ga0070663_100436059 3300005455 Bacteria 1077
18 Ga0070678_100200162 3300005456 Bacteria 1648
19 Ga0070678_100218576 3300005456 Bacteria 1583
20 Ga0070681_10061396 3300005458 Bacteria 3733
21 Ga0068867_100188754 3300005459 Bacteria 1643
22 Ga0070679_100020197 3300005530 Bacteria 6493
23 Ga0070679_100043900 3300005530 Bacteria 4452
24 Ga0070684_100001851 3300005535 Bacteria 15491
25 Ga0070684_100179635 3300005535 Bacteria 1924
26 Ga0068853_100310344 3300005539 Bacteria 1460
27 Ga0070665_100114215 3300005548 Bacteria 2703
28 Ga0070665_100440832 3300005548 Bacteria 1312
29 Ga0070704_100383398 3300005549 Bacteria 1195
30 Ga0068855_100384634 3300005563 Bacteria 1540
31 Ga0068855_100767576 3300005563 Bacteria 1027
32 Ga0068857_100024451 3300005577 Bacteria 5318
33 Ga0068854_100056377 3300005578 Bacteria 2832
34 Ga0068856_100066185 3300005614 Bacteria 3571
35 Ga0068856_100580661 3300005614 Bacteria 1142
36 Ga0070702_100006785 3300005615 Bacteria 5443
37 Ga0070702_100120118 3300005615 Bacteria 1644
38 Ga0068852_100021413 3300005616 Bacteria 5162
39 Ga0068852_100414241 3300005616 Bacteria 1328
40 Ga0068859_100208342 3300005617 Bacteria 2041
41 Ga0068864_100252494 3300005618 Bacteria 1638
42 Ga0068861_100310847 3300005719 Bacteria 1369
43 Ga0068858_100016796 3300005842 Bacteria 6873
44 Ga0081539_10007159 3300005985 Bacteria 10287
45 Ga0070717_10004906 3300006028 Bacteria 9730
46 Ga0070712_100385772 3300006175 Bacteria 1154
47 Ga0075428_100910536 3300006844 Bacteria 933
48 Ga0097620_100208325 3300006931 Bacteria 2041
49 Ga0105240_10034701 3300009093 Bacteria 6504
50 Ga0105245_10076984 3300009098 Bacteria 3040
51 Ga0114129_10007450 3300009147 Bacteria 15589
52 Ga0105243_10011338 3300009148 Bacteria 6745
53 Ga0105243_10692769 3300009148 Bacteria 992
54 Ga0105242_10396876 3300009176 Bacteria 1286
55 Ga0105237_10077213 3300009545 Bacteria 3321
56 Ga0105238_10043360 3300009551 Bacteria 4552
57 Ga0105249_10074641 3300009553 Bacteria 3139
58 Ga0105246_10091665 3300011119 Bacteria 2191
59 Ga0157371_10115726 3300013102 Bacteria 1904
60 Ga0157370_10025457 3300013104 Bacteria 5857
61 Ga0157369_10016156 3300013105 Bacteria 8403
62 Ga0157372_10042061 3300013307 Bacteria 5052
63 Ga0157372_10349854 3300013307 Bacteria 1721
64 Ga0157372_10843961 3300013307 Bacteria 1064
65 Ga0157375_10398577 3300013308 Bacteria 1543
66 Ga0163163_10447345 3300014325 Bacteria 1352
67 Ga0157380_10285332 3300014326 Bacteria 1513
68 Ga0157377_10284725 3300014745 Bacteria 1085
69 Ga0157377_10351013 3300014745 Bacteria 990
70 Ga0157379_10003687 3300014968 Bacteria 13022
71 Ga0157379_10208916 3300014968 Bacteria 1767
72 Ga0206356_10524050 3300020070 Bacteria 1518
73 Ga0206353_11748275 3300020082 Bacteria 3944
74 Ga0213874_10098806 3300021377 Bacteria 968
75 Ga0213876_10043890 3300021384 Bacteria 2363
76 Ga0213876_10059461 3300021384 Bacteria 2017
77 Ga0213875_10015081 3300021388 Bacteria 3763
78 Ga0213875_10020818 3300021388 Bacteria 3145
79 Ga0213875_10025820 3300021388 Bacteria 2796
80 Ga0213875_10029081 3300021388 Bacteria 2620
81 Ga0224712_10181355 3300022467 Bacteria 949
82 Ga0207692_10000005 3300025898 Bacteria 370169
83 Ga0207642_10241896 3300025899 Bacteria 1019
84 Ga0207688_10075643 3300025901 Bacteria 1917
85 Ga0207707_10076266 3300025912 Bacteria 2925
86 Ga0207671_10042415 3300025914 Bacteria 3367
87 Ga0207657_10027895 3300025919 Bacteria 5162
88 Ga0207652_10058845 3300025921 Bacteria 3311
89 Ga0207694_10082616 3300025924 Bacteria 2525
90 Ga0207687_10117704 3300025927 Bacteria 1982
91 Ga0207664_10105457 3300025929 Bacteria 2336
92 Ga0207690_10038870 3300025932 Bacteria 3100
93 Ga0207709_10024087 3300025935 Bacteria 3472
94 Ga0207709_10346861 3300025935 Bacteria 1119
95 Ga0207704_10419808 3300025938 Bacteria 1060
96 Ga0207665_10565127 3300025939 Bacteria 885
97 Ga0207689_10428124 3300025942 Bacteria 1105
98 Ga0207689_10576096 3300025942 Bacteria 946
99 Ga0207661_10002565 3300025944 Bacteria 12505
100 Ga0207667_10643063 3300025949 Bacteria 1067
101 Ga0207640_10047464 3300025981 Bacteria 2770
102 Ga0207640_10143983 3300025981 Bacteria 1741
103 Ga0207677_10180211 3300026023 Bacteria 1661
104 Ga0207639_10034935 3300026041 Bacteria 3718
105 Ga0207678_10534235 3300026067 Bacteria 1024
106 Ga0207702_10035724 3300026078 Bacteria 4154
107 Ga0207648_10139524 3300026089 Bacteria 2136
108 Ga0207674_10060700 3300026116 Bacteria 3823
109 Ga0207674_10414958 3300026116 Bacteria 1301
110 Ga0207428_10061059 3300027907 Bacteria 2985
111 Ga0307405_10058413 3300031731 Bacteria 2427
112 Ga0307413_10342536 3300031824 Bacteria 1150
113 Ga0307410_10190439 3300031852 Bacteria 1559
114 Ga0326468_10004248 3300031889 Bacteria 1245
115 Ga0307407_10050249 3300031903 Bacteria 2385
116 Ga0307407_10421009 3300031903 Bacteria 962
117 Ga0307412_10147206 3300031911 Bacteria 1733
118 Ga0307409_100193491 3300031995 Bacteria 1813
119 Ga0307409_100363683 3300031995 Bacteria 1369
120 Ga0307409_100805775 3300031995 Bacteria 947
121 Ga0307409_100865298 3300031995 Bacteria 915
122 Ga0307416_100125728 3300032002 Bacteria 2296
123 Ga0373952_0040186 3300035092 Bacteria 1078
124 Ga0395900_0194563 3300037418 Bacteria 2055
125 Ga0395900_0545495 3300037418 Bacteria 1105
126 Ga0395900_0596826 3300037418 Bacteria 1045
127 Ga0395898_0556607 3300037466 Bacteria 1089
128 Ga0436364_0072010 3300037853 Bacteria 1668
129 Ga0436364_0136939 3300037853 Bacteria 970
130 Ga0436364_0317805 3300037853 Bacteria 22106
131 Ga0436364_0430524 3300037853 Bacteria 6074
132 Ga0436364_0449516 3300037853 Bacteria 11836
133 Ga0436364_0873258 3300037853 Bacteria 16887
134 Ga0395901_0010657 3300038443 Bacteria 9317
135 Ga0395901_0050596 3300038443 Bacteria 4316
136 Ga0395901_0188996 3300038443 Bacteria 2160
137 Ga0395901_0277074 3300038443 Bacteria 1744
138 Ga0395901_0315971 3300038443 Bacteria 1617
139 Ga0436365_0470735 3300039437 Bacteria 2854
140 Ga0436365_0565670 3300039437 Bacteria 911
141 Ga0436365_1060357 3300039437 Bacteria 7575
142 Ga0436365_1083620 3300039437 Bacteria 4104
143 Ga0436365_1208979 3300039437 Bacteria 1813
144 Ga0436365_1225052 3300039437 Bacteria 9678
145 Ga0436365_1596418 3300039437 Bacteria 1397
146 Ga0436360_1067153 3300039438 Bacteria 2767
147 Ga0436363_0375945 3300039450 Bacteria 2262
148 Ga0436363_0817846 3300039450 Bacteria 4384
149 Ga0436363_1578459 3300039450 Bacteria 1692
150 Ga0450893_0024390 3300042532 Bacteria 1056
151 Ga0466966_0029118 3300044684 Bacteria 3595
152 Ga0466963_0002226 3300044694 Bacteria 10745
153 Ga0466963_0003218 3300044694 Bacteria 9293
154 Ga0466963_0004977 3300044694 Bacteria 7754
155 Ga0466968_0022554 3300044735 Bacteria 2559
156 Ga0466968_0028088 3300044735 Bacteria 2319
157 Ga0466968_0029529 3300044735 Bacteria 2268
158 Ga0466968_0035457 3300044735 Bacteria 2088
159 Ga0466968_0057638 3300044735 Bacteria 1670
160 Ga0466968_0068964 3300044735 Bacteria 1536
161 Ga0466970_0160394 3300044765 Bacteria 1244
162 Ga0466970_0397200 3300044765 Bacteria 786
163 Ga0466957_0024446 3300044842 Bacteria 3575
164 Ga0466957_0080558 3300044842 Bacteria 2027
165 Ga0466957_0163101 3300044842 Bacteria 1448
166 Ga0466957_0502297 3300044842 Bacteria 841
167 Ga0466960_0000003 3300044901 Bacteria 86010
168 Ga0466960_0057511 3300044901 Bacteria 1897
169 Ga0466960_0060216 3300044901 Bacteria 1860
170 Ga0466960_0068744 3300044901 Bacteria 1758
171 Ga0466960_0221484 3300044901 Bacteria 1041
172 Ga0466959_0053758 3300045049 Bacteria 2943
173 Ga0466959_0058348 3300045049 Bacteria 2811
174 Ga0466959_0081618 3300045049 Unclassified 2330
175 Ga0466959_0094541 3300045049 Bacteria 2144
176 Ga0466959_0247699 3300045049 Bacteria 1229
177 Ga0466958_0023047 3300045836 Bacteria 3651
178 Ga0466958_0033714 3300045836 Bacteria 3051
179 Ga0466958_0285472 3300045836 Bacteria 1058
180 Ga0466958_0356289 3300045836 Bacteria 942
181 Ga0466967_0003618 3300045976 Bacteria 10151
182 Ga0466967_0093850 3300045976 Bacteria 2731
183 Ga0466967_0144794 3300045976 Bacteria 2216
184 Ga0466967_0250831 3300045976 Bacteria 1691
185 Ga0466967_0852109 3300045976 Bacteria 906
186 Ga0495650_0000053 3300046471 Bacteria 316684
187 Ga0495586_0312401 3300046535 Bacteria 901
188 Ga0495672_0006189 3300047320 Bacteria 9335
189 Ga0496100_0000222 3300048903 Bacteria 30993
190 Ga0496100_0118829 3300048903 Bacteria 1847
191 Ga0496100_0565396 3300048903 Bacteria 881
192 Ga0496101_0011619 3300048904 Bacteria 5848
193 Ga0496104_0609192 3300048907 Bacteria 1002
194 Ga0496105_0570660 3300048908 Bacteria 881
195 Ga0496106_0278497 3300048909 Bacteria 1340
196 Ga0496107_0024329 3300048910 Bacteria 4285
197 Ga0496108_0153582 3300048911 Bacteria 1987
198 Ga0496109_0059903 3300048912 Bacteria 3478
199 Ga0496109_0205396 3300048912 Bacteria 1852
200 Ga0496109_0459543 3300048912 Bacteria 1202
201 Ga0496109_1114207 3300048912 Bacteria 726
202 Ga0496111_0125974 3300048914 Bacteria 1893
203 Ga0496112_0001472 3300048915 Bacteria 18075
204 Ga0496112_0005288 3300048915 Bacteria 11133
205 Ga0496112_0023910 3300048915 Bacteria 5845
206 Ga0496113_0007139 3300048916 Bacteria 7156
207 Ga0496119_0109721 3300048922 Bacteria 1534
208 Ga0496121_0057607 3300048924 Bacteria 3219
209 Ga0496124_0028770 3300048927 Bacteria 4964
210 Ga0501031_0280717 3300049568 Bacteria 1080
211 Ga0501034_0008473 3300049571 Bacteria 10861
212 Ga0501034_0385651 3300049571 Bacteria 1325
213 Ga0501037_0196289 3300049573 Bacteria 1427
214 Ga0501038_0110782 3300049574 Bacteria 2274
215 Ga0501046_0150695 3300049580 Bacteria 1754
216 Ga0501047_0097877 3300049581 Bacteria 2812
217 Ga0501067_0015694 3300049583 Bacteria 4191
218 Ga0501069_0052856 3300049585 Bacteria 2263
219 Ga0501071_0503567 3300049587 Bacteria 929
220 Ga0501072_0047794 3300049588 Bacteria 3370
221 Ga0501073_0024217 3300049589 Bacteria 4358
222 Ga0501074_0227683 3300049590 Bacteria 1327
223 Ga0501079_0210113 3300049741 Bacteria 1520
224 Ga0501080_0070926 3300049742 Bacteria 3240
225 Ga0501080_0086371 3300049742 Bacteria 2915
226 Ga0501035_0136355 3300049822 Bacteria 2136
227 Ga0501044_0134835 3300049823 Bacteria 2461
228 nmdc:mga05p37_9519_c1 3300050507 Bacteria 11504
229 nmdc:mga0qj67_15054_c1 3300050509 Bacteria 5852
230 nmdc:mga08y16_131890_c1 3300050511 Bacteria 2598
231 nmdc:mga08y16_750072_c1 3300050511 Bacteria 972
232 Ga0500556_0000362 3300053104 Bacteria 33773
233 Ga0500616_0007215 3300053153 Bacteria 7103
234 Ga0500616_0014807 3300053153 Bacteria 4472
235 Ga0501082_0167602 3300060353 Bacteria 1909
236 Ga0466962_0018613 3300061719 Bacteria 3341
237 Ga0466962_0032446 3300061719 Bacteria 2501
238 Ga0466962_0239924 3300061719 Bacteria 889

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300013307 Ga0157372_10843961 Ga0157372_108439611 192
2 3300048912 Ga0496109_1114207 Ga0496109_1114207_94_672 192
3 3300047320 Ga0495672_0006189 Ga0495672_0006189_7987_8736 199
4 3300048914 Ga0496111_0125974 Ga0496111_0125974_556_1239 208
5 3300061719 Ga0466962_0018613 Ga0466962_0018613_1265_2044 212
6 3300045049 Ga0466959_0247699 Ga0466959_0247699_429_1184 213
7 3300048903 Ga0496100_0000222 Ga0496100_0000222_13541_14224 213
8 3300048904 Ga0496101_0011619 Ga0496101_0011619_3784_4467 213
9 3300048927 Ga0496124_0028770 Ga0496124_0028770_603_1352 213
10 3300005456 Ga0070678_100200162 Ga0070678_1002001622 214
11 3300025899 Ga0207642_10241896 Ga0207642_102418961 215
12 3300005437 Ga0070710_10000009 Ga0070710_1000000976 216
13 3300025898 Ga0207692_10000005 Ga0207692_10000005251 216
14 3300038443 Ga0395901_0315971 Ga0395901_0315971_351_1094 216
15 3300014745 Ga0157377_10351013 Ga0157377_103510131 217
16 3300037418 Ga0395900_0194563 Ga0395900_0194563_1118_1882 218
17 3300038443 Ga0395901_0050596 Ga0395901_0050596_132_896 218
18 3300014326 Ga0157380_10285332 Ga0157380_102853322 220
19 3300044694 Ga0466963_0002226 Ga0466963_0002226_4140_4937 223
20 3300044735 Ga0466968_0057638 Ga0466968_0057638_708_1505 223
21 3300044765 Ga0466970_0397200 Ga0466970_0397200_40_714 223
22 3300044842 Ga0466957_0024446 Ga0466957_0024446_1289_2086 223
23 3300045049 Ga0466959_0058348 Ga0466959_0058348_1766_2563 223
24 3300045976 Ga0466967_0093850 Ga0466967_0093850_1713_2510 223
25 3300061719 Ga0466962_0239924 Ga0466962_0239924_34_831 223
26 3300046471 Ga0495650_0000053 Ga0495650_0000053_205222_205974 224
27 3300014745 Ga0157377_10284725 Ga0157377_102847252 225
28 3300042532 Ga0450893_0024390 Ga0450893_0024390_58_735 225
29 3300005338 Ga0068868_100142806 Ga0068868_1001428062 226
30 3300005356 Ga0070674_100180109 Ga0070674_1001801092 226
31 3300025981 Ga0207640_10143983 Ga0207640_101439832 226
32 3300026023 Ga0207677_10180211 Ga0207677_101802112 226
33 3300035092 Ga0373952_0040186 Ga0373952_0040186_370_1050 226
34 3300048909 Ga0496106_0278497 Ga0496106_0278497_158_898 226
35 3300013307 Ga0157372_10349854 Ga0157372_103498543 227
36 3300044735 Ga0466968_0068964 Ga0466968_0068964_126_923 228
37 3300005614 Ga0068856_100580661 Ga0068856_1005806612 229
38 3300011119 Ga0105246_10091665 Ga0105246_100916651 229
39 3300013308 Ga0157375_10398577 Ga0157375_103985771 229
40 3300014325 Ga0163163_10447345 Ga0163163_104473452 229
41 3300014968 Ga0157379_10208916 Ga0157379_102089163 229
42 3300025942 Ga0207689_10428124 Ga0207689_104281242 229
43 3300037466 Ga0395898_0556607 Ga0395898_0556607_124_813 229
44 3300044684 Ga0466966_0029118 Ga0466966_0029118_1701_2393 229
45 3300048915 Ga0496112_0005288 Ga0496112_0005288_3907_4596 229
46 3300045836 Ga0466958_0285472 Ga0466958_0285472_65_829 230
47 3300053153 Ga0500616_0014807 Ga0500616_0014807_1977_2729 230
48 3300048924 Ga0496121_0057607 Ga0496121_0057607_1954_2691 231
49 3300037418 Ga0395900_0596826 Ga0395900_0596826_180_878 232
50 3300038443 Ga0395901_0010657 Ga0395901_0010657_385_1083 232
51 3300045049 Ga0466959_0081618 Ga0466959_0081618_1486_2238 232
52 3300006844 Ga0075428_100910536 Ga0075428_1009105361 233
53 3300009148 Ga0105243_10692769 Ga0105243_106927692 233
54 3300025935 Ga0207709_10346861 Ga0207709_103468612 233
55 3300048903 Ga0496100_0118829 Ga0496100_0118829_553_1254 233
56 3300048907 Ga0496104_0609192 Ga0496104_0609192_288_989 233
57 3300048908 Ga0496105_0570660 Ga0496105_0570660_125_826 233
58 3300048910 Ga0496107_0024329 Ga0496107_0024329_1858_2559 233
59 3300048911 Ga0496108_0153582 Ga0496108_0153582_1255_1956 233
60 3300048912 Ga0496109_0059903 Ga0496109_0059903_2296_2997 233
61 3300048915 Ga0496112_0001472 Ga0496112_0001472_5506_6207 233
62 3300048916 Ga0496113_0007139 Ga0496113_0007139_3632_4333 233
63 3300050511 nmdc:mga08y16_750072_c1 nmdc:mga08y16_750072_c1_93_794 233
64 3300045836 Ga0466958_0023047 Ga0466958_0023047_834_1604 234
65 3300048912 Ga0496109_0205396 Ga0496109_0205396_873_1601 237
66 3300049580 Ga0501046_0150695 Ga0501046_0150695_721_1437 238
67 3300044842 Ga0466957_0502297 Ga0466957_0502297_94_828 239
68 3300050509 nmdc:mga0qj67_15054_c1 nmdc:mga0qj67_15054_c1_2665_3387 239
69 3300053104 Ga0500556_0000362 Ga0500556_0000362_27927_28682 240
70 3300053153 Ga0500616_0007215 Ga0500616_0007215_2606_3361 240
71 3300005985 Ga0081539_10007159 Ga0081539_100071599 241
72 3300005548 Ga0070665_100114215 Ga0070665_1001142151 242
73 3300037418 Ga0395900_0545495 Ga0395900_0545495_39_782 242
74 3300038443 Ga0395901_0277074 Ga0395901_0277074_143_886 242
75 3300044765 Ga0466970_0160394 Ga0466970_0160394_48_791 242
76 3300044901 Ga0466960_0000003 Ga0466960_0000003_28992_29735 242
77 3300044901 Ga0466960_0057511 Ga0466960_0057511_901_1629 242
78 3300044901 Ga0466960_0221484 Ga0466960_0221484_144_887 242
79 3300049571 Ga0501034_0008473 Ga0501034_0008473_4508_5251 242
80 3300049741 Ga0501079_0210113 Ga0501079_0210113_721_1449 242
81 3300049742 Ga0501080_0070926 Ga0501080_0070926_242_970 242
82 3300014968 Ga0157379_10003687 Ga0157379_100036873 243
83 3300025939 Ga0207665_10565127 Ga0207665_105651271 243
84 3300048922 Ga0496119_0109721 Ga0496119_0109721_349_1095 243
85 3300005563 Ga0068855_100767576 Ga0068855_1007675762 245
86 3300038443 Ga0395901_0188996 Ga0395901_0188996_1026_1778 245
87 3300044735 Ga0466968_0022554 Ga0466968_0022554_1064_1828 245
88 3300044735 Ga0466968_0029529 Ga0466968_0029529_1237_1986 245
89 3300044901 Ga0466960_0068744 Ga0466960_0068744_403_1152 245
90 3300048915 Ga0496112_0023910 Ga0496112_0023910_1627_2388 245
91 3300005334 Ga0068869_100631873 Ga0068869_1006318731 246
92 3300005337 Ga0070682_100074666 Ga0070682_1000746664 246
93 3300005338 Ga0068868_100020785 Ga0068868_1000207853 246
94 3300005340 Ga0070689_100157722 Ga0070689_1001577222 246
95 3300005341 Ga0070691_10086593 Ga0070691_100865931 246
96 3300005366 Ga0070659_100132505 Ga0070659_1001325053 246
97 3300005455 Ga0070663_100436059 Ga0070663_1004360591 246
98 3300005456 Ga0070678_100218576 Ga0070678_1002185762 246
99 3300005459 Ga0068867_100188754 Ga0068867_1001887542 246
100 3300005530 Ga0070679_100043900 Ga0070679_1000439003 246
101 3300005548 Ga0070665_100440832 Ga0070665_1004408321 246
102 3300005578 Ga0068854_100056377 Ga0068854_1000563773 246
103 3300005615 Ga0070702_100006785 Ga0070702_1000067856 246
104 3300005616 Ga0068852_100414241 Ga0068852_1004142411 246
105 3300005617 Ga0068859_100208342 Ga0068859_1002083424 246
106 3300005618 Ga0068864_100252494 Ga0068864_1002524942 246
107 3300005719 Ga0068861_100310847 Ga0068861_1003108472 246
108 3300005842 Ga0068858_100016796 Ga0068858_1000167964 246
109 3300006931 Ga0097620_100208325 Ga0097620_1002083254 246
110 3300009098 Ga0105245_10076984 Ga0105245_100769843 246
111 3300009148 Ga0105243_10011338 Ga0105243_100113383 246
112 3300009553 Ga0105249_10074641 Ga0105249_100746414 246
113 3300025901 Ga0207688_10075643 Ga0207688_100756432 246
114 3300025927 Ga0207687_10117704 Ga0207687_101177041 246
115 3300025935 Ga0207709_10024087 Ga0207709_100240873 246
116 3300025938 Ga0207704_10419808 Ga0207704_104198082 246
117 3300025942 Ga0207689_10576096 Ga0207689_105760961 246
118 3300026067 Ga0207678_10534235 Ga0207678_105342351 246
119 3300026089 Ga0207648_10139524 Ga0207648_101395242 246
120 3300026116 Ga0207674_10414958 Ga0207674_104149581 246
121 3300031731 Ga0307405_10058413 Ga0307405_100584132 246
122 3300031824 Ga0307413_10342536 Ga0307413_103425361 246
123 3300031852 Ga0307410_10190439 Ga0307410_101904392 246
124 3300031903 Ga0307407_10050249 Ga0307407_100502491 246
125 3300031903 Ga0307407_10421009 Ga0307407_104210092 246
126 3300031911 Ga0307412_10147206 Ga0307412_101472063 246
127 3300031995 Ga0307409_100193491 Ga0307409_1001934913 246
128 3300031995 Ga0307409_100363683 Ga0307409_1003636831 246
129 3300031995 Ga0307409_100805775 Ga0307409_1008057752 246
130 3300031995 Ga0307409_100865298 Ga0307409_1008652981 246
131 3300032002 Ga0307416_100125728 Ga0307416_1001257282 246
132 3300048912 Ga0496109_0459543 Ga0496109_0459543_277_1026 246
133 3300005615 Ga0070702_100120118 Ga0070702_1001201182 247
134 3300044842 Ga0466957_0080558 Ga0466957_0080558_1069_1818 247
135 3300045976 Ga0466967_0144794 Ga0466967_0144794_603_1352 247
136 3300049581 Ga0501047_0097877 Ga0501047_0097877_646_1401 247
137 3300049823 Ga0501044_0134835 Ga0501044_0134835_846_1601 247
138 3300039437 Ga0436365_0565670 Ga0436365_0565670_15_761 248
139 3300006028 Ga0070717_10004906 Ga0070717_100049068 249
140 3300044735 Ga0466968_0035457 Ga0466968_0035457_962_1750 249
141 3300005435 Ga0070714_100236145 Ga0070714_1002361452 250
142 3300005535 Ga0070684_100179635 Ga0070684_1001796351 250
143 3300005549 Ga0070704_100383398 Ga0070704_1003833981 250
144 3300009147 Ga0114129_10007450 Ga0114129_1000745012 250
145 3300009176 Ga0105242_10396876 Ga0105242_103968762 250
146 3300021377 Ga0213874_10098806 Ga0213874_100988062 250
147 3300021384 Ga0213876_10043890 Ga0213876_100438903 250
148 3300021388 Ga0213875_10015081 Ga0213875_100150812 250
149 3300021388 Ga0213875_10020818 Ga0213875_100208182 250
150 3300021388 Ga0213875_10025820 Ga0213875_100258202 250
151 3300021388 Ga0213875_10029081 Ga0213875_100290812 250
152 3300022467 Ga0224712_10181355 Ga0224712_101813551 250
153 3300025929 Ga0207664_10105457 Ga0207664_101054572 250
154 3300027907 Ga0207428_10061059 Ga0207428_100610592 250
155 3300037853 Ga0436364_0072010 Ga0436364_0072010_656_1408 250
156 3300037853 Ga0436364_0136939 Ga0436364_0136939_91_843 250
157 3300037853 Ga0436364_0317805 Ga0436364_0317805_1701_2453 250
158 3300037853 Ga0436364_0430524 Ga0436364_0430524_5013_5765 250
159 3300037853 Ga0436364_0449516 Ga0436364_0449516_2893_3645 250
160 3300037853 Ga0436364_0873258 Ga0436364_0873258_3131_3883 250
161 3300039437 Ga0436365_0470735 Ga0436365_0470735_1126_1878 250
162 3300039437 Ga0436365_1060357 Ga0436365_1060357_158_910 250
163 3300039437 Ga0436365_1083620 Ga0436365_1083620_3151_3903 250
164 3300039437 Ga0436365_1208979 Ga0436365_1208979_805_1557 250
165 3300039437 Ga0436365_1225052 Ga0436365_1225052_7022_7774 250
166 3300039437 Ga0436365_1596418 Ga0436365_1596418_347_1099 250
167 3300039438 Ga0436360_1067153 Ga0436360_1067153_83_835 250
168 3300039450 Ga0436363_0375945 Ga0436363_0375945_1038_1790 250
169 3300039450 Ga0436363_0817846 Ga0436363_0817846_217_969 250
170 3300039450 Ga0436363_1578459 Ga0436363_1578459_601_1353 250
171 3300044694 Ga0466963_0003218 Ga0466963_0003218_5348_6100 250
172 3300044694 Ga0466963_0004977 Ga0466963_0004977_1480_2232 250
173 3300044735 Ga0466968_0028088 Ga0466968_0028088_635_1387 250
174 3300044842 Ga0466957_0163101 Ga0466957_0163101_661_1413 250
175 3300044901 Ga0466960_0060216 Ga0466960_0060216_749_1501 250
176 3300045049 Ga0466959_0053758 Ga0466959_0053758_1197_1949 250
177 3300045049 Ga0466959_0094541 Ga0466959_0094541_838_1590 250
178 3300045836 Ga0466958_0033714 Ga0466958_0033714_2236_2988 250
179 3300045836 Ga0466958_0356289 Ga0466958_0356289_45_797 250
180 3300045976 Ga0466967_0003618 Ga0466967_0003618_6218_6970 250
181 3300045976 Ga0466967_0250831 Ga0466967_0250831_563_1315 250
182 3300045976 Ga0466967_0852109 Ga0466967_0852109_116_868 250
183 3300049568 Ga0501031_0280717 Ga0501031_0280717_33_785 250
184 3300049571 Ga0501034_0385651 Ga0501034_0385651_515_1267 250
185 3300049573 Ga0501037_0196289 Ga0501037_0196289_194_946 250
186 3300049574 Ga0501038_0110782 Ga0501038_0110782_168_920 250
187 3300049583 Ga0501067_0015694 Ga0501067_0015694_2406_3158 250
188 3300049585 Ga0501069_0052856 Ga0501069_0052856_182_934 250
189 3300049587 Ga0501071_0503567 Ga0501071_0503567_64_816 250
190 3300049588 Ga0501072_0047794 Ga0501072_0047794_1178_1930 250
191 3300049589 Ga0501073_0024217 Ga0501073_0024217_874_1626 250
192 3300049590 Ga0501074_0227683 Ga0501074_0227683_143_895 250
193 3300049742 Ga0501080_0086371 Ga0501080_0086371_1946_2698 250
194 3300049822 Ga0501035_0136355 Ga0501035_0136355_1155_1907 250
195 3300050507 nmdc:mga05p37_9519_c1 nmdc:mga05p37_9519_c1_1448_2218 250
196 3300050511 nmdc:mga08y16_131890_c1 nmdc:mga08y16_131890_c1_1236_2006 250
197 3300060353 Ga0501082_0167602 Ga0501082_0167602_716_1468 250
198 3300061719 Ga0466962_0032446 Ga0466962_0032446_186_938 250
199 3300046535 Ga0495586_0312401 Ga0495586_0312401_99_857 251
200 3300031889 Ga0326468_10004248 Ga0326468_100042481 253
201 3300021384 Ga0213876_10059461 Ga0213876_100594611 255
202 3300048903 Ga0496100_0565396 Ga0496100_0565396_58_831 257
203 3300005329 Ga0070683_100089868 Ga0070683_1000898683 259
204 3300005336 Ga0070680_100011130 Ga0070680_1000111303 259
205 3300005337 Ga0070682_100036178 Ga0070682_1000361781 259
206 3300005339 Ga0070660_100037812 Ga0070660_1000378121 259
207 3300005345 Ga0070692_10030646 Ga0070692_100306462 259
208 3300005366 Ga0070659_100042892 Ga0070659_1000428924 259
209 3300005458 Ga0070681_10061396 Ga0070681_100613962 259
210 3300005530 Ga0070679_100020197 Ga0070679_1000201976 259
211 3300005535 Ga0070684_100001851 Ga0070684_10000185110 259
212 3300005539 Ga0068853_100310344 Ga0068853_1003103441 259
213 3300005563 Ga0068855_100384634 Ga0068855_1003846343 259
214 3300005577 Ga0068857_100024451 Ga0068857_1000244515 259
215 3300005614 Ga0068856_100066185 Ga0068856_1000661853 259
216 3300005616 Ga0068852_100021413 Ga0068852_1000214135 259
217 3300006175 Ga0070712_100385772 Ga0070712_1003857722 259
218 3300009093 Ga0105240_10034701 Ga0105240_100347013 259
219 3300009545 Ga0105237_10077213 Ga0105237_100772133 259
220 3300009551 Ga0105238_10043360 Ga0105238_100433603 259
221 3300013102 Ga0157371_10115726 Ga0157371_101157262 259
222 3300013104 Ga0157370_10025457 Ga0157370_100254574 259
223 3300013105 Ga0157369_10016156 Ga0157369_100161563 259
224 3300013307 Ga0157372_10042061 Ga0157372_100420614 259
225 3300020070 Ga0206356_10524050 Ga0206356_105240503 259
226 3300020082 Ga0206353_11748275 Ga0206353_117482754 259
227 3300025912 Ga0207707_10076266 Ga0207707_100762663 259
228 3300025914 Ga0207671_10042415 Ga0207671_100424154 259
229 3300025919 Ga0207657_10027895 Ga0207657_100278954 259
230 3300025921 Ga0207652_10058845 Ga0207652_100588454 259
231 3300025924 Ga0207694_10082616 Ga0207694_100826162 259
232 3300025932 Ga0207690_10038870 Ga0207690_100388703 259
233 3300025944 Ga0207661_10002565 Ga0207661_100025658 259
234 3300025949 Ga0207667_10643063 Ga0207667_106430632 259
235 3300025981 Ga0207640_10047464 Ga0207640_100474641 259
236 3300026041 Ga0207639_10034935 Ga0207639_100349354 259
237 3300026078 Ga0207702_10035724 Ga0207702_100357243 259
238 3300026116 Ga0207674_10060700 Ga0207674_100607004 259

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13487

HD_5

HD domain

66

229

0.96

PF01966

HD

HD domain

78

198

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
4r8z-assembly1.cif.gz_B crystal structure of pa4781 hd-gyp domain from pseudomonas aeruginosa at 2.2a resolution showing a bi-metallic ni ion center 0.9238 53 248
4mdz-assembly1.cif.gz_A crystal structure of a hd-gyp domain (a cyclic-di-gmp phosphodiesterase) containing a tri-nuclear metal centre 0.8895 54 250
4r8z-assembly1.cif.gz_B crystal structure of pa4781 hd-gyp domain from pseudomonas aeruginosa at 2.2a resolution showing a bi-metallic ni ion center 0.8341 53 248
3tm8-assembly2.cif.gz_B "bd1817, a hdg""y""p protein from bdellovibrio bacteriovorus" 0.7808 81 238
5z7c-assembly1.cif.gz_A crystal structure of cyclic gmp-amp specifc phosphodiesterases in v.cholerae (v-cgap3) 0.6918 64 249
ID Description Score Start End Superfamily
4r8zB00 Mainly Alpha;Orthogonal Bundle;Hypothetical protein af1432;Hypothetical protein af1432 0.9238 53 248 1.10.3210.10
4me4A02 Mainly Alpha;Orthogonal Bundle;Hypothetical protein af1432;Hypothetical protein af1432 0.8819 62 250 1.10.3210.10
4me4A02 Mainly Alpha;Orthogonal Bundle;Hypothetical protein af1432;Hypothetical protein af1432 0.8604 62 250 1.10.3210.10
4r8zB00 Mainly Alpha;Orthogonal Bundle;Hypothetical protein af1432;Hypothetical protein af1432 0.8341 53 248 1.10.3210.10
3tm8B00 Mainly Alpha;Orthogonal Bundle;Hypothetical protein af1432;Hypothetical protein af1432 0.7808 81 238 1.10.3210.10
ID Description Score Start End GO Terms
AF-A0A1W1VWI9-F1-model_v4 Response regulator containing a CheY-like receiver domain and an HD-GYP domain 0.9727 51 240 GO:0016787
AF-A0A7W8KH82-F1-model_v4 Putative nucleotidyltransferase with HDIG domain 0.9719 51 237 GO:0016740
GO:0016787
AF-A0A399FDR0-F1-model_v4 Cyclic di-GMP phosphodiesterase response regulator RpfG (EC 3.1.4.52) 0.9682 52 237 GO:0071111
AF-A0A538A364-F1-model_v4 HD-GYP domain-containing protein 0.9674 56 248 GO:0016787
AF-A0A7X1NVU5-F1-model_v4 HD domain-containing protein 0.9645 52 237 GO:0016787

Feature Viewer

pLDDT pTM Quality
91.59 0.79 High
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Predicted Structure (AlphaFold2)

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