F350501

General Info

Members Datasets Scaffolds Average Seq Length
237 185 189 223

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2832004796|2832010332
Length 269
Sequence DTTPGGTTGMNAYDATPGGTAGMNAYDATPGGTAGMSAGDATGSRPIRVLLADDQHLVRTGFRVILEVEDDIEVVGEAADGDRAVGMTRALRPDVVLMDVEMPRVDGLEATRRISADTDTPGGPAVLILTTFDRDDYLFAALRAGASGFLLKNGTPEALVEAIRVLARGDGLLAPDVTRRVIATFARPGGGSVVGTSPEAALGDLTPREREVLVLVAGGASNAEIAAALHLGEATVKSHVSRVLAKLGLRDRVQAVVFAYEHGVVRPGG

Samples

Sample ID Description Type Environment
1 2501939600 Micromonospora sp. L5 Isolate Unclassified
2 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
3 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
4 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
5 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
6 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
7 2643221616 Leifsonia sp. Root227 Isolate Unclassified
8 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
9 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
10 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
11 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
12 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
13 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
14 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
15 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
16 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
17 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
18 2858882152 Micromonospora noduli MED15 Isolate Nodule
19 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
20 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
21 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
22 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
23 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
24 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
25 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
26 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
27 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
28 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
29 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
30 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
31 2870801768 Micrococcus endophyticus DSM 17945 Isolate Unclassified
32 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
33 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
34 2883821847 Microlunatus elymi KUDC0627 Isolate Rhizosphere
35 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
36 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
37 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
38 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
39 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
40 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
41 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
42 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
43 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
44 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
45 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
46 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
47 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
48 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
49 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
50 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
51 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
52 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
53 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
54 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
55 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
56 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
57 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
58 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
59 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
60 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
61 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
62 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
63 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
64 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
65 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
66 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
67 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
68 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
69 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
70 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
71 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
72 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
73 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
77 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
78 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
80 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
92 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
93 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
94 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
95 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
96 3300031889 Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Metagenome Rhizosphere
97 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
98 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
99 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
100 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
101 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
102 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
103 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
104 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
105 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
106 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
107 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
108 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
109 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
110 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
111 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
112 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
113 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
114 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
115 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
116 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
117 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
118 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
119 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
120 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
121 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
122 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
123 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
124 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
125 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
126 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
127 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
128 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
129 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
130 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
131 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
132 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
133 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
134 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
135 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
136 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
139 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
140 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
143 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
144 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
145 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
147 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
148 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
150 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
151 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
152 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
153 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
154 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
155 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
156 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
157 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
158 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
159 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
160 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
161 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
162 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
163 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
164 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
165 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
166 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
167 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
168 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
169 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
170 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
171 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
172 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
173 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
174 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
175 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
176 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
177 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
178 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
179 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
180 649633069 Micromonospora sp. L5 Isolate Unclassified
181 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
182 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
183 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
184 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
185 8054734606 Micromonospora hortensis NIE111 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 79.75
Metatranscriptomes 0.42
Isolates 19.83

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.92
Nodule 2.11
Rhizoplane 5.06
Rhizosphere 62.45
Stem 0
Stem Tuber 0.84
Unclassified 15.61

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25162J39368_1009078 3300002737 Bacteria 1360
2 JGI25164J39214_1000505 3300002772 Bacteria 18861
3 JGI25164J39214_1000598 3300002772 Bacteria 15791
4 JGI25165J46597_1000002 3300003214 Bacteria 765387
5 JGI25165J46597_1000055 3300003214 Bacteria 224187
6 Ga0055539_1000008 3300003752 Bacteria 537665
7 Ga0055533_1000001 3300003756 Bacteria 1863437
8 Ga0055525_1000221 3300003759 Bacteria 62301
9 Ga0055541_1001158 3300003841 Bacteria 5907
10 Ga0070668_100000388 3300005347 Bacteria 29132
11 Ga0070714_100007267 3300005435 Bacteria 8608
12 Ga0070713_100004728 3300005436 Bacteria 9205
13 Ga0070710_10004943 3300005437 Bacteria 6305
14 Ga0070678_100199778 3300005456 Bacteria 1649
15 Ga0070706_100350873 3300005467 Bacteria 1375
16 Ga0070684_100006102 3300005535 Bacteria 9284
17 Ga0070664_100032646 3300005564 Bacteria 4355
18 Ga0068859_100212271 3300005617 Bacteria 2022
19 Ga0068862_100018813 3300005844 Bacteria 5756
20 Ga0081540_1001065 3300005983 Bacteria 24422
21 Ga0070717_10007730 3300006028 Bacteria 8000
22 Ga0075365_10141443 3300006038 Bacteria 1670
23 Ga0075363_100026841 3300006048 Bacteria 2949
24 Ga0075364_10063867 3300006051 Bacteria 2417
25 Ga0070712_100315011 3300006175 Bacteria 1271
26 Ga0070712_100540724 3300006175 Bacteria 981
27 Ga0075367_10050607 3300006178 Bacteria 2453
28 Ga0075370_10016885 3300006353 Bacteria 3935
29 Ga0075430_100105357 3300006846 Bacteria 2353
30 Ga0075431_100183448 3300006847 Bacteria 2147
31 Ga0097620_100212270 3300006931 Bacteria 2022
32 Ga0111539_10788172 3300009094 Bacteria 1106
33 Ga0105242_10348292 3300009176 Bacteria 1367
34 Ga0157375_10402746 3300013308 Bacteria 1535
35 Ga0157376_10611632 3300014969 Bacteria 1086
36 Ga0206353_10998901 3300020082 Bacteria 2357
37 Ga0209566_100026 3300025225 Bacteria 367457
38 Ga0209674_100001 3300025226 Bacteria 4013750
39 Ga0209563_100001 3300025230 Bacteria 4013775
40 Ga0207427_100028 3300025231 Bacteria 388949
41 Ga0207427_100329 3300025231 Bacteria 31805
42 Ga0209437_100619 3300025233 Bacteria 21553
43 Ga0209437_101593 3300025233 Bacteria 5233
44 Ga0209677_100001 3300025253 Bacteria 4013787
45 Ga0209233_1000001 3300025261 Bacteria 2992747
46 Ga0207692_10034119 3300025898 Bacteria 2461
47 Ga0207699_10196055 3300025906 Bacteria 1365
48 Ga0207700_10013151 3300025928 Bacteria 5372
49 Ga0207664_10016572 3300025929 Bacteria 5380
50 Ga0207686_10224486 3300025934 Bacteria 1358
51 Ga0207661_10012899 3300025944 Bacteria 6094
52 Ga0207679_10021221 3300025945 Bacteria 4399
53 Ga0207668_10000633 3300025972 Bacteria 21686
54 Ga0207674_10236448 3300026116 Bacteria 1774
55 Ga0268265_10010790 3300028380 Bacteria 6168
56 Ga0268264_11323134 3300028381 Bacteria 731
57 Ga0307515_10000045 3300028794 Bacteria 301029
58 Ga0307513_10023768 3300031456 Bacteria 7151
59 Ga0307516_10004634 3300031730 Bacteria 16865
60 Ga0307516_10013151 3300031730 Bacteria 8843
61 Ga0307405_10006003 3300031731 Bacteria 5934
62 Ga0307405_10044044 3300031731 Bacteria 2727
63 Ga0307410_10119247 3300031852 Bacteria 1921
64 Ga0326468_10000475 3300031889 Bacteria 4270
65 Ga0307406_10006374 3300031901 Bacteria 6510
66 Ga0307406_10035940 3300031901 Bacteria 3050
67 Ga0307406_10234439 3300031901 Bacteria 1373
68 Ga0307407_10017722 3300031903 Bacteria 3582
69 Ga0307407_10668466 3300031903 Bacteria 780
70 Ga0307412_10041671 3300031911 Bacteria 2978
71 Ga0307409_100007531 3300031995 Bacteria 6522
72 Ga0307416_100002021 3300032002 Bacteria 11402
73 Ga0307416_100075057 3300032002 Bacteria 2828
74 Ga0307414_10174536 3300032004 Bacteria 1722
75 Ga0307411_10004131 3300032005 Bacteria 6892
76 Ga0307415_100015774 3300032126 Bacteria 4485
77 Ga0307415_100020422 3300032126 Bacteria 4045
78 Ga0307415_100129249 3300032126 Bacteria 1909
79 Ga0307507_10000682 3300033179 Bacteria 74144
80 Ga0373951_0000099 3300035091 Bacteria 33540
81 Ga0395900_0026456 3300037418 Bacteria 5941
82 Ga0395898_0000752 3300037466 Bacteria 56634
83 Ga0439447_013601 3300041407 Bacteria 2304
84 Ga0451839_0860432 3300041496 Bacteria 961
85 Ga0451843_0643796 3300041509 Bacteria 780
86 Ga0439459_0023997 3300042438 Bacteria 1193
87 Ga0451577_0246304 3300042876 Bacteria 1618
88 Ga0466969_0033608 3300044656 Bacteria 2603
89 Ga0466966_0036584 3300044684 Bacteria 3169
90 Ga0466961_0166097 3300044693 Bacteria 1374
91 Ga0466963_0015473 3300044694 Bacteria 4726
92 Ga0466963_0035579 3300044694 Bacteria 3245
93 Ga0466963_0120263 3300044694 Bacteria 1807
94 Ga0466964_0114839 3300044706 Bacteria 1206
95 Ga0466970_0059926 3300044765 Bacteria 2038
96 Ga0466957_0046426 3300044842 Bacteria 2637
97 Ga0466957_0113911 3300044842 Bacteria 1718
98 Ga0466960_0033178 3300044901 Bacteria 2398
99 Ga0466959_0003067 3300045049 Bacteria 10816
100 Ga0466967_0647939 3300045976 Bacteria 1044
101 Ga0495606_0002591 3300046507 Bacteria 20691
102 Ga0495668_0000269 3300046616 Bacteria 73430
103 Ga0495635_0098731 3300046663 Bacteria 1996
104 Ga0495626_0000434 3300048091 Bacteria 42623
105 Ga0496100_0111542 3300048903 Bacteria 1901
106 Ga0496101_0313107 3300048904 Bacteria 1231
107 Ga0496105_0105302 3300048908 Bacteria 2329
108 Ga0496108_0000294 3300048911 Bacteria 42903
109 Ga0496108_0340338 3300048911 Bacteria 1309
110 Ga0496110_0434002 3300048913 Bacteria 1197
111 Ga0496114_0011640 3300048917 Bacteria 7036
112 Ga0496114_0040881 3300048917 Bacteria 3841
113 Ga0496114_0072584 3300048917 Bacteria 2895
114 Ga0496114_0076631 3300048917 Bacteria 2818
115 Ga0496115_0086599 3300048918 Bacteria 2556
116 Ga0496115_0130441 3300048918 Bacteria 2071
117 Ga0496126_0025312 3300048929 Bacteria 5712
118 Ga0496126_0201675 3300048929 Bacteria 1680
119 Ga0501031_0000070 3300049568 Bacteria 55223
120 Ga0501031_0070186 3300049568 Bacteria 2282
121 Ga0501032_0001698 3300049569 Bacteria 17443
122 Ga0501032_0017416 3300049569 Bacteria 5046
123 Ga0501032_0027153 3300049569 Bacteria 3935
124 Ga0501032_0121182 3300049569 Bacteria 1729
125 Ga0501033_0000577 3300049570 Bacteria 34086
126 Ga0501033_0027142 3300049570 Bacteria 4307
127 Ga0501033_0175408 3300049570 Bacteria 1538
128 Ga0501034_0013260 3300049571 Bacteria 8490
129 Ga0501034_0051672 3300049571 Bacteria 4144
130 Ga0501036_0000090 3300049572 Bacteria 57378
131 Ga0501036_0034415 3300049572 Bacteria 4285
132 Ga0501036_0090673 3300049572 Bacteria 2582
133 Ga0501036_0121107 3300049572 Bacteria 2209
134 Ga0501037_0005612 3300049573 Bacteria 9145
135 Ga0501037_0052375 3300049573 Bacteria 2985
136 Ga0501037_0237449 3300049573 Bacteria 1278
137 Ga0501038_0001748 3300049574 Bacteria 20194
138 Ga0501038_0035732 3300049574 Bacteria 4362
139 Ga0501038_0085182 3300049574 Bacteria 2658
140 Ga0501038_0670714 3300049574 Bacteria 779
141 Ga0501039_0000752 3300049575 Bacteria 23337
142 Ga0501039_0446769 3300049575 Bacteria 1015
143 Ga0501040_0051721 3300049576 Bacteria 2810
144 Ga0501041_0007816 3300049577 Bacteria 6284
145 Ga0501042_0098604 3300049578 Bacteria 2101
146 Ga0501043_0001406 3300049579 Bacteria 21026
147 Ga0501046_0004700 3300049580 Bacteria 12320
148 Ga0501047_0006167 3300049581 Bacteria 11271
149 Ga0501047_0344580 3300049581 Bacteria 1327
150 Ga0501048_0002317 3300049582 Bacteria 14516
151 Ga0501048_0068949 3300049582 Bacteria 2498
152 Ga0501067_0004144 3300049583 Bacteria 8003
153 Ga0501068_0024804 3300049584 Bacteria 3523
154 Ga0501068_0155822 3300049584 Bacteria 1438
155 Ga0501069_0000235 3300049585 Bacteria 24836
156 Ga0501069_0074407 3300049585 Bacteria 1906
157 Ga0501070_0000088 3300049586 Bacteria 77423
158 Ga0501070_0006845 3300049586 Bacteria 9699
159 Ga0501071_0051529 3300049587 Bacteria 2966
160 Ga0501071_0121763 3300049587 Bacteria 1934
161 Ga0501072_0089537 3300049588 Bacteria 2443
162 Ga0501073_0000263 3300049589 Bacteria 34800
163 Ga0501074_0000040 3300049590 Bacteria 59598
164 Ga0501074_0050049 3300049590 Bacteria 3016
165 Ga0501075_0094835 3300049591 Bacteria 2265
166 Ga0501076_0116691 3300049592 Bacteria 2160
167 Ga0501079_0090853 3300049741 Bacteria 2366
168 Ga0501080_0005756 3300049742 Bacteria 11086
169 Ga0501080_0143479 3300049742 Bacteria 2208
170 Ga0501083_0046042 3300049744 Bacteria 2950
171 Ga0501035_0004740 3300049822 Bacteria 12915
172 Ga0501044_0017001 3300049823 Bacteria 7805
173 Ga0501044_0271951 3300049823 Bacteria 1630
174 Ga0501045_0188683 3300049824 Bacteria 1536
175 nmdc:mga03n38_15262_c1 3300050490 Bacteria 2962
176 nmdc:mga00v17_177674_c1 3300050491 Bacteria 1373
177 nmdc:mga0yw44_46451_c2 3300050492 Bacteria 1625
178 nmdc:mga06z11_9553_c1 3300050494 Bacteria 4092
179 nmdc:mga07m45_102085_c1 3300050496 Bacteria 1126
180 nmdc:mga06r32_334976_c1 3300050510 Bacteria 1498
181 nmdc:mga08y16_880008_c1 3300050511 Bacteria 883
182 Ga0500635_0000013 3300053080 Bacteria 133088
183 Ga0500568_0000026 3300053139 Bacteria 165582
184 Ga0500568_0000717 3300053139 Bacteria 23747
185 Ga0500573_0002309 3300053140 Bacteria 9485
186 Ga0501084_0001366 3300054114 Bacteria 19306
187 Ga0501084_0103742 3300054114 Bacteria 2388
188 Ga0501082_0728214 3300060353 Bacteria 868
189 Ga0466962_0014175 3300061719 Bacteria 3840

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300041496 Ga0451839_0860432 Ga0451839_0860432_98_691 178
2 3300028794 Ga0307515_10000045 Ga0307515_10000045283 194
3 3300041509 Ga0451843_0643796 Ga0451843_0643796_11_610 196
4 3300042438 Ga0439459_0023997 Ga0439459_0023997_26_631 197
5 3300048911 Ga0496108_0000294 Ga0496108_0000294_40878_41525 197
6 3300009094 Ga0111539_10788172 Ga0111539_107881722 207
7 3300041407 Ga0439447_013601 Ga0439447_013601_869_1609 207
8 3300050511 nmdc:mga08y16_880008_c1 nmdc:mga08y16_880008_c1_44_718 207
9 3300044656 Ga0466969_0033608 Ga0466969_0033608_1020_1706 210
10 3300044693 Ga0466961_0166097 Ga0466961_0166097_233_919 210
11 3300045049 Ga0466959_0003067 Ga0466959_0003067_6593_7279 210
12 3300049574 Ga0501038_0670714 Ga0501038_0670714_13_732 210
13 3300061719 Ga0466962_0014175 Ga0466962_0014175_2908_3594 210
14 3300044694 Ga0466963_0035579 Ga0466963_0035579_738_1397 211
15 3300048913 Ga0496110_0434002 Ga0496110_0434002_161_838 211
16 3300048917 Ga0496114_0011640 Ga0496114_0011640_5752_6429 211
17 iso_pu_bacteria 2675903059 2676480627 211
18 3300006038 Ga0075365_10141443 Ga0075365_101414432 212
19 3300006048 Ga0075363_100026841 Ga0075363_1000268414 212
20 3300006178 Ga0075367_10050607 Ga0075367_100506072 212
21 3300006353 Ga0075370_10016885 Ga0075370_100168852 212
22 3300031731 Ga0307405_10006003 Ga0307405_100060035 212
23 3300031852 Ga0307410_10119247 Ga0307410_101192472 212
24 3300031901 Ga0307406_10006374 Ga0307406_100063742 212
25 3300031911 Ga0307412_10041671 Ga0307412_100416713 212
26 3300031995 Ga0307409_100007531 Ga0307409_1000075316 212
27 3300032002 Ga0307416_100002021 Ga0307416_1000020215 212
28 3300032002 Ga0307416_100075057 Ga0307416_1000750572 212
29 3300032004 Ga0307414_10174536 Ga0307414_101745361 212
30 3300032126 Ga0307415_100015774 Ga0307415_1000157742 212
31 3300044694 Ga0466963_0120263 Ga0466963_0120263_724_1428 212
32 3300049569 Ga0501032_0121182 Ga0501032_0121182_903_1565 212
33 3300049572 Ga0501036_0034415 Ga0501036_0034415_2817_3479 212
34 3300049573 Ga0501037_0237449 Ga0501037_0237449_595_1257 212
35 3300049574 Ga0501038_0035732 Ga0501038_0035732_2462_3124 212
36 3300049575 Ga0501039_0446769 Ga0501039_0446769_20_682 212
37 3300049576 Ga0501040_0051721 Ga0501040_0051721_1714_2376 212
38 3300049577 Ga0501041_0007816 Ga0501041_0007816_1630_2292 212
39 3300049578 Ga0501042_0098604 Ga0501042_0098604_769_1431 212
40 3300049582 Ga0501048_0068949 Ga0501048_0068949_1248_1910 212
41 3300049585 Ga0501069_0074407 Ga0501069_0074407_40_702 212
42 3300049587 Ga0501071_0051529 Ga0501071_0051529_1778_2440 212
43 3300049588 Ga0501072_0089537 Ga0501072_0089537_1109_1771 212
44 3300049590 Ga0501074_0050049 Ga0501074_0050049_475_1137 212
45 3300049591 Ga0501075_0094835 Ga0501075_0094835_1213_1875 212
46 3300049592 Ga0501076_0116691 Ga0501076_0116691_727_1389 212
47 3300049741 Ga0501079_0090853 Ga0501079_0090853_860_1522 212
48 3300049742 Ga0501080_0143479 Ga0501080_0143479_892_1554 212
49 3300050490 nmdc:mga03n38_15262_c1 nmdc:mga03n38_15262_c1_126_773 212
50 3300050492 nmdc:mga0yw44_46451_c2 nmdc:mga0yw44_46451_c2_616_1263 212
51 3300050494 nmdc:mga06z11_9553_c1 nmdc:mga06z11_9553_c1_1713_2360 212
52 3300050496 nmdc:mga07m45_102085_c1 nmdc:mga07m45_102085_c1_402_1049 212
53 3300053140 Ga0500573_0002309 Ga0500573_0002309_4815_5486 212
54 3300054114 Ga0501084_0103742 Ga0501084_0103742_1218_1880 212
55 iso_pu_bacteria 2643221616 2644095971 212
56 iso_pu_bacteria 2643221632 2644183306 212
57 iso_pu_bacteria 2858902515 2858904104 212
58 iso_pu_bacteria 2869048445 2869048679 212
59 iso_pu_bacteria 2884763398 2884765336 212
60 3300005347 Ga0070668_100000388 Ga0070668_10000038818 213
61 3300005467 Ga0070706_100350873 Ga0070706_1003508732 213
62 3300005617 Ga0068859_100212271 Ga0068859_1002122712 213
63 3300005844 Ga0068862_100018813 Ga0068862_1000188135 213
64 3300006931 Ga0097620_100212270 Ga0097620_1002122702 213
65 3300025972 Ga0207668_10000633 Ga0207668_1000063314 213
66 3300028380 Ga0268265_10010790 Ga0268265_100107905 213
67 3300031456 Ga0307513_10023768 Ga0307513_100237687 213
68 3300031731 Ga0307405_10044044 Ga0307405_100440443 213
69 3300031901 Ga0307406_10035940 Ga0307406_100359402 213
70 3300032126 Ga0307415_100129249 Ga0307415_1001292492 213
71 3300049568 Ga0501031_0000070 Ga0501031_0000070_39566_40306 213
72 3300049569 Ga0501032_0001698 Ga0501032_0001698_5411_6151 213
73 3300049570 Ga0501033_0000577 Ga0501033_0000577_189_929 213
74 3300049571 Ga0501034_0013260 Ga0501034_0013260_4478_5218 213
75 3300049572 Ga0501036_0000090 Ga0501036_0000090_49394_50134 213
76 3300049573 Ga0501037_0005612 Ga0501037_0005612_160_900 213
77 3300049574 Ga0501038_0001748 Ga0501038_0001748_13839_14579 213
78 3300049575 Ga0501039_0000752 Ga0501039_0000752_13057_13797 213
79 3300049579 Ga0501043_0001406 Ga0501043_0001406_15876_16616 213
80 3300049580 Ga0501046_0004700 Ga0501046_0004700_3795_4535 213
81 3300049581 Ga0501047_0006167 Ga0501047_0006167_7962_8702 213
82 3300049582 Ga0501048_0002317 Ga0501048_0002317_7117_7857 213
83 3300049583 Ga0501067_0004144 Ga0501067_0004144_3774_4514 213
84 3300049584 Ga0501068_0024804 Ga0501068_0024804_1302_2042 213
85 3300049585 Ga0501069_0000235 Ga0501069_0000235_1465_2205 213
86 3300049586 Ga0501070_0006845 Ga0501070_0006845_6262_7002 213
87 3300049589 Ga0501073_0000263 Ga0501073_0000263_4177_4917 213
88 3300049590 Ga0501074_0000040 Ga0501074_0000040_53037_53777 213
89 3300049742 Ga0501080_0005756 Ga0501080_0005756_7284_8024 213
90 3300049744 Ga0501083_0046042 Ga0501083_0046042_1576_2316 213
91 3300049822 Ga0501035_0004740 Ga0501035_0004740_8986_9726 213
92 3300049823 Ga0501044_0017001 Ga0501044_0017001_4003_4743 213
93 3300049824 Ga0501045_0188683 Ga0501045_0188683_682_1422 213
94 3300054114 Ga0501084_0001366 Ga0501084_0001366_9942_10682 213
95 3300060353 Ga0501082_0728214 Ga0501082_0728214_118_858 213
96 3300005535 Ga0070684_100006102 Ga0070684_1000061024 214
97 3300005564 Ga0070664_100032646 Ga0070664_1000326463 214
98 3300006175 Ga0070712_100540724 Ga0070712_1005407241 214
99 3300009176 Ga0105242_10348292 Ga0105242_103482922 214
100 3300020082 Ga0206353_10998901 Ga0206353_109989012 214
101 3300025906 Ga0207699_10196055 Ga0207699_101960552 214
102 3300025934 Ga0207686_10224486 Ga0207686_102244863 214
103 3300025944 Ga0207661_10012899 Ga0207661_100128992 214
104 3300025945 Ga0207679_10021221 Ga0207679_100212213 214
105 3300026116 Ga0207674_10236448 Ga0207674_102364482 214
106 3300031730 Ga0307516_10004634 Ga0307516_1000463410 214
107 3300031901 Ga0307406_10234439 Ga0307406_102344392 214
108 3300033179 Ga0307507_10000682 Ga0307507_1000068253 214
109 3300044684 Ga0466966_0036584 Ga0466966_0036584_511_1197 214
110 3300044842 Ga0466957_0113911 Ga0466957_0113911_998_1696 214
111 3300045976 Ga0466967_0647939 Ga0466967_0647939_181_846 214
112 iso_pu_bacteria 2887478801 2887480494 214
113 3300005456 Ga0070678_100199778 Ga0070678_1001997781 215
114 3300013308 Ga0157375_10402746 Ga0157375_104027462 215
115 3300014969 Ga0157376_10611632 Ga0157376_106116321 215
116 3300028381 Ga0268264_11323134 Ga0268264_113231341 215
117 3300031889 Ga0326468_10000475 Ga0326468_100004752 215
118 3300032005 Ga0307411_10004131 Ga0307411_100041313 215
119 3300042876 Ga0451577_0246304 Ga0451577_0246304_590_1243 215
120 3300044842 Ga0466957_0046426 Ga0466957_0046426_1948_2601 215
121 3300046507 Ga0495606_0002591 Ga0495606_0002591_11868_12548 215
122 3300046616 Ga0495668_0000269 Ga0495668_0000269_34959_35639 215
123 3300046663 Ga0495635_0098731 Ga0495635_0098731_150_806 215
124 3300048091 Ga0495626_0000434 Ga0495626_0000434_4323_5003 215
125 3300048911 Ga0496108_0340338 Ga0496108_0340338_183_839 215
126 3300048917 Ga0496114_0072584 Ga0496114_0072584_1337_1993 215
127 3300048917 Ga0496114_0076631 Ga0496114_0076631_1755_2411 215
128 iso_pu_bacteria 2501939600 2501945935 215
129 iso_pu_bacteria 2856858025 2856861935 215
130 iso_pu_bacteria 2870801768 2870803949 215
131 iso_pu_bacteria 649633069 649812535 215
132 3300002772 JGI25164J39214_1000598 JGI25164J39214_10005985 216
133 3300003214 JGI25165J46597_1000002 JGI25165J46597_1000002623 216
134 3300003752 Ga0055539_1000008 Ga0055539_1000008361 216
135 3300003756 Ga0055533_1000001 Ga0055533_1000001710 216
136 3300003759 Ga0055525_1000221 Ga0055525_100022125 216
137 3300003841 Ga0055541_1001158 Ga0055541_10011587 216
138 3300025225 Ga0209566_100026 Ga0209566_10002614 216
139 3300025226 Ga0209674_100001 Ga0209674_100001710 216
140 3300025230 Ga0209563_100001 Ga0209563_100001710 216
141 3300025231 Ga0207427_100329 Ga0207427_10032918 216
142 3300025233 Ga0209437_101593 Ga0209437_1015934 216
143 3300025253 Ga0209677_100001 Ga0209677_100001710 216
144 3300025261 Ga0209233_1000001 Ga0209233_10000012184 216
145 3300031730 Ga0307516_10013151 Ga0307516_100131513 216
146 3300031903 Ga0307407_10017722 Ga0307407_100177222 216
147 3300031903 Ga0307407_10668466 Ga0307407_106684661 216
148 3300032126 Ga0307415_100020422 Ga0307415_1000204224 216
149 3300035091 Ga0373951_0000099 Ga0373951_0000099_19103_19774 216
150 3300037418 Ga0395900_0026456 Ga0395900_0026456_3123_3785 216
151 3300037466 Ga0395898_0000752 Ga0395898_0000752_7492_8154 216
152 3300044694 Ga0466963_0015473 Ga0466963_0015473_3264_3953 216
153 3300044706 Ga0466964_0114839 Ga0466964_0114839_64_753 216
154 3300044765 Ga0466970_0059926 Ga0466970_0059926_1219_1881 216
155 3300044901 Ga0466960_0033178 Ga0466960_0033178_1636_2298 216
156 3300048903 Ga0496100_0111542 Ga0496100_0111542_444_1106 216
157 3300048904 Ga0496101_0313107 Ga0496101_0313107_221_883 216
158 3300048908 Ga0496105_0105302 Ga0496105_0105302_569_1231 216
159 3300048917 Ga0496114_0040881 Ga0496114_0040881_1313_1975 216
160 3300048918 Ga0496115_0086599 Ga0496115_0086599_1280_1942 216
161 3300048918 Ga0496115_0130441 Ga0496115_0130441_1353_2015 216
162 3300048929 Ga0496126_0025312 Ga0496126_0025312_3948_4610 216
163 3300048929 Ga0496126_0201675 Ga0496126_0201675_49_711 216
164 3300049569 Ga0501032_0027153 Ga0501032_0027153_1521_2171 216
165 3300049570 Ga0501033_0027142 Ga0501033_0027142_1113_1763 216
166 3300049572 Ga0501036_0121107 Ga0501036_0121107_1413_2063 216
167 3300049573 Ga0501037_0052375 Ga0501037_0052375_423_1073 216
168 3300049581 Ga0501047_0344580 Ga0501047_0344580_466_1116 216
169 3300049586 Ga0501070_0000088 Ga0501070_0000088_26585_27247 216
170 3300049587 Ga0501071_0121763 Ga0501071_0121763_942_1592 216
171 3300049823 Ga0501044_0271951 Ga0501044_0271951_688_1338 216
172 3300053080 Ga0500635_0000013 Ga0500635_0000013_99462_100124 216
173 3300053139 Ga0500568_0000026 Ga0500568_0000026_96472_97137 216
174 3300053139 Ga0500568_0000717 Ga0500568_0000717_67_717 216
175 3300005435 Ga0070714_100007267 Ga0070714_1000072679 217
176 3300005436 Ga0070713_100004728 Ga0070713_10000472811 217
177 3300005437 Ga0070710_10004943 Ga0070710_100049434 217
178 3300006028 Ga0070717_10007730 Ga0070717_100077309 217
179 3300006175 Ga0070712_100315011 Ga0070712_1003150112 217
180 3300006846 Ga0075430_100105357 Ga0075430_1001053572 217
181 3300006847 Ga0075431_100183448 Ga0075431_1001834482 217
182 3300025898 Ga0207692_10034119 Ga0207692_100341192 217
183 3300025928 Ga0207700_10013151 Ga0207700_100131514 217
184 3300025929 Ga0207664_10016572 Ga0207664_100165723 217
185 3300049584 Ga0501068_0155822 Ga0501068_0155822_350_1003 217
186 3300050510 nmdc:mga06r32_334976_c1 nmdc:mga06r32_334976_c1_618_1295 217
187 iso_pu_bacteria 2515154088 2515494810 217
188 iso_pu_bacteria 2515154129 2515718815 217
189 iso_pu_bacteria 2515154137 2515755471 217
190 iso_pu_bacteria 2515154202 2516083022 217
191 iso_pu_bacteria 2515154203 2516090107 217
192 iso_pu_bacteria 2831935698 2831936715 217
193 iso_pu_bacteria 2867507094 2867508081 217
194 iso_pu_bacteria 2939660829 2939661525 217
195 3300005983 Ga0081540_1001065 Ga0081540_100106514 218
196 3300049568 Ga0501031_0070186 Ga0501031_0070186_39_695 218
197 3300049569 Ga0501032_0017416 Ga0501032_0017416_1777_2433 218
198 3300049570 Ga0501033_0175408 Ga0501033_0175408_515_1171 218
199 3300049571 Ga0501034_0051672 Ga0501034_0051672_2981_3637 218
200 3300049572 Ga0501036_0090673 Ga0501036_0090673_415_1071 218
201 3300049574 Ga0501038_0085182 Ga0501038_0085182_947_1603 218
202 iso_pu_bacteria 2643221616 2644098004 218
203 iso_pu_bacteria 2832004796 2832010332 218
204 iso_pu_bacteria 2861520306 2861522762 218
205 iso_pu_bacteria 2866065130 2866067338 218
206 iso_pu_bacteria 2867302475 2867305116 218
207 iso_pu_bacteria 2867312974 2867317826 218
208 iso_pu_bacteria 2867319477 2867320221 218
209 3300006051 Ga0075364_10063867 Ga0075364_100638672 219
210 3300050491 nmdc:mga00v17_177674_c1 nmdc:mga00v17_177674_c1_507_1211 219
211 iso_pu_bacteria 2772190715 2772643525 219
212 iso_pu_bacteria 2855670206 2855674808 219
213 iso_pu_bacteria 2855676851 2855680489 219
214 iso_pu_bacteria 2857288857 2857292692 219
215 iso_pu_bacteria 2858848962 2858851243 219
216 iso_pu_bacteria 2858882152 2858884221 219
217 iso_pu_bacteria 2858888857 2858890846 219
218 iso_pu_bacteria 2858895516 2858899481 219
219 iso_pu_bacteria 2869061728 2869067742 219
220 iso_pu_bacteria 2869068681 2869073315 219
221 iso_pu_bacteria 2880489317 2880492169 219
222 iso_pu_bacteria 2880495981 2880500113 219
223 iso_pu_bacteria 2929219909 2929222016 219
224 iso_pu_bacteria 2929226422 2929228672 219
225 iso_pu_bacteria 8003830390 8003832383 219
226 iso_pu_bacteria 8003870546 8003877648 219
227 iso_pu_bacteria 8054704163 8054707652 219
228 iso_pu_bacteria 8054727385 8054730425 219
229 iso_pu_bacteria 8054734606 8054739584 219
230 iso_pu_bacteria 2884763398 2884766718 220
231 3300002737 JGI25162J39368_1009078 JGI25162J39368_10090782 224
232 3300002772 JGI25164J39214_1000505 JGI25164J39214_10005052 224
233 3300003214 JGI25165J46597_1000055 JGI25165J46597_100005542 224
234 3300025231 Ga0207427_100028 Ga0207427_100028346 224
235 3300025233 Ga0209437_100619 Ga0209437_10061917 224
236 3300025261 Ga0209233_1000001 Ga0209233_1000001844 224
237 iso_pu_bacteria 2883821847 2883822588 224

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

204

259

0.98

PF04545

Sigma70_r4

Sigma-70, region 4

201

248

0.97

PF08281

Sigma70_r4_2

Sigma-70, region 4

199

247

0.96

PF00072

Response_reg

Response regulator receiver domain

49

164

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
4wsz-assembly1.cif.gz_A crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9921 160 222
4wul-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 26bp dna 0.9882 160 222
1zlj-assembly4.cif.gz_H crystal structure of the mycobacterium tuberculosis hypoxic response regulator dosr c-terminal domain 0.9881 159 218
4wsz-assembly1.cif.gz_B crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9838 160 222
7ve5-assembly1.cif.gz_B c-terminal domain of vrar 0.9787 159 221
ID Description Score Start End Superfamily
af_P52106_149_214_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.987 161 219 1.10.10.10
1zlkB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9783 159 218 1.10.10.10
3eulC00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9709 2 121 3.40.50.2300
af_O53213_1064_1134_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9681 160 220 1.10.10.10
3ulqB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9664 162 216 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A6B2TAE0-F1-model_v4 Response regulator transcription factor 0.9859 4 122 GO:0000160
GO:0003677
AF-A0A2W2CUA7-F1-model_v4 DNA-binding response regulator 0.9761 1 117 GO:0000160
GO:0003677
AF-A0A0K8PUS4-F1-model_v4 Two-component system response regulator 0.9689 1 109 GO:0000160
GO:0003677
AF-A0A3N5UVX0-F1-model_v4 DNA-binding response regulator 0.9681 2 123 GO:0000160
GO:0003677
AF-A0A6G3PEL0-F1-model_v4 Response regulator transcription factor 0.9652 2 123 GO:0000160
GO:0003677

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pLDDT pTM Quality
84.91 0.77 High
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Predicted Structure (AlphaFold2)

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