F350255

General Info

Members Datasets Scaffolds Average Seq Length
237 190 201 436

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0007070|Ga0453684_0007070_8224_9651
Length 475
Sequence VSLAELIGRVRSAELNRRLGTVRRLRGLAIEADGPTGHIGELCAVLPPGQGRELDAAASLSPCAGAILAEVVGIQPGRVTLMPYGSAQGLAVGAMVVALGRRSDVGVGDVLLGRVIDGFGAPLDGRPAPATRAARPLRGGAINPMQRPRIDRVLETGIRSIDALLSLGRGQRVGIFAGSGVGKSTLLGMIARHVKADVNVIALIGERGREVREFIEKQLGDAGLARSVVVVATADQPALSRIRAAQAAVAISEHFREQGRHVLLTMDSLTRYAMARREVGLSAGEPPTARGYTPSVFAELPELCERCGTGPSGGSITALFTVLVEGDDLNEPISDALRAILDGHLVLSRQLAHQGQYPAIDPLRSASRLLPDLATAEERQLVGRTIQVLSLLDRNRQMVEVGAYQAGSNPELDEALACRPRLMAWLRQDEGGADRASALLELGEVLAQPAVSPARPPSSGSSLRPHATPTSGGPR

Samples

Sample ID Description Type Environment
1 2510065057 Sinorhizobium meliloti WSM1022 Isolate Nodule
2 2513237091 Sinorhizobium meliloti RRI128 Isolate Nodule
3 2513237140 Sinorhizobium meliloti GVPV12 Isolate Nodule
4 2517487022 Sinorhizobium medicae WSM4191 Isolate Nodule
5 2585428057 Methylibium sp. YR605 Isolate Rhizosphere
6 2643221544 Pelomonas sp. Root1444 Isolate Unclassified
7 2643221585 Pelomonas sp. Root662 Isolate Unclassified
8 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
9 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
10 2643221656 Pelomonas sp. Root405 Isolate Unclassified
11 2657244999 Sinorhizobium sojae CCBAU 05684 Isolate Unclassified
12 2738541337 Pelomonas sp. BT06 Isolate Unclassified
13 2791355082 Ensifer alkalisoli YIC4027 Isolate Nodule
14 2802429268 Sinorhizobium sojae CCBAU 05684 Isolate Unclassified
15 2838661181 Rhizobium mongolense SEMIA 402 Isolate Nodule
16 2857357740 Paraburkholderia tropica BE15 Isolate Rhizosphere
17 2916000859 Sinorhizobium meliloti USDA1562 Isolate Nodule
18 2921257292 Sinorhizobium meliloti USDA1320 Isolate Nodule
19 2924179722 Sinorhizobium meliloti USDA1280 Isolate Nodule
20 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
21 2937023124 Sinorhizobium meliloti USDA1335 Isolate Nodule
22 2937113482 Sinorhizobium meliloti USDA1180 Isolate Nodule
23 2957382221 Sinorhizobium meliloti USDA1919 Isolate Nodule
24 2957395598 Sinorhizobium meliloti USDA1237 Isolate Nodule
25 2957402308 Sinorhizobium meliloti USDA1794 Isolate Nodule
26 2960597568 Sinorhizobium meliloti 3085 Isolate Nodule
27 2960610863 Sinorhizobium meliloti USDA1792 Isolate Nodule
28 2960667422 Sinorhizobium meliloti USDA1170 Isolate Nodule
29 2964615318 Sinorhizobium meliloti USDA1248 Isolate Nodule
30 2967755722 Sinorhizobium meliloti USDA1302 Isolate Nodule
31 2970095765 Sinorhizobium meliloti USDA1225 Isolate Nodule
32 2970102677 Sinorhizobium meliloti USDA1325 Isolate Nodule
33 3002141150 Phyllobacterium sp. 628 Isolate Unclassified
34 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
35 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
36 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
37 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
38 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
39 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
40 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
41 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
42 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
43 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
44 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
45 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
46 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
47 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
48 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
49 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
50 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
51 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
52 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
53 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
54 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
55 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
56 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
57 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
58 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
59 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
60 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
61 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
62 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
63 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
64 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
65 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
66 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
67 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
68 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
69 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
70 3300022739 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - brown nodules Metagenome Nodule
71 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
72 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
73 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
74 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
75 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
76 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
77 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
78 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
80 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
81 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
96 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
99 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
100 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
101 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
102 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
103 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
104 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
105 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
106 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
107 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
108 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
109 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
110 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
111 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
112 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
113 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
114 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
115 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
116 3300041492 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_2 MetaG Metagenome Unclassified
117 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
118 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
119 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
120 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
121 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
122 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
123 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
124 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
125 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
126 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
127 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
128 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
129 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
130 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
131 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
132 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
133 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
134 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
135 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
136 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
137 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
138 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
139 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
140 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
141 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
142 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
143 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
144 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
145 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
146 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
147 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
148 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
149 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
150 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
151 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
152 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
153 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
154 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
155 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
156 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
157 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
158 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
159 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
160 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
161 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
162 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
163 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
164 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
165 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
166 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
167 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
168 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
169 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
170 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
171 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
172 3300049654 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_A_0_control Metagenome Rhizosphere
173 3300049658 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F3_B_0_drought Metagenome Rhizosphere
174 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
175 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
176 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
177 3300049706 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_B_2_control Metagenome Rhizosphere
178 3300049764 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J12_A_4_control Metagenome Rhizosphere
179 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
180 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
181 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
182 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
183 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
184 3300053124 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 endosphere Metagenome Endosphere
185 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
186 3300053141 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 endosphere Metagenome Endosphere
187 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
188 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
189 8003992118 Sinorhizobium meliloti RRI128 Isolate Nodule
190 8049293176 Ensifer alkalisoli YIC4027 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 84.81
Metatranscriptomes 0
Isolates 15.19

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.28
Nodule 11.39
Rhizoplane 0
Rhizosphere 64.56
Stem 0
Stem Tuber 0
Unclassified 14.77

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10022535 3300001979 Bacteria 2166
2 JGI25162J39368_1003779 3300002737 Bacteria 4037
3 JGI25154J39366_1000123 3300002738 Bacteria 61878
4 rootH1_10018849 3300003316 Bacteria 10629
5 rootH2_10015438 3300003320 Bacteria 10933
6 rootL2_10107710 3300003322 Bacteria 14606
7 Ga0055524_1000046 3300003775 Bacteria 150909
8 Ga0055540_1000007 3300003792 Bacteria 318178
9 Ga0055531_10006313 3300003794 Bacteria 6749
10 Ga0070670_100064744 3300005331 Bacteria 3136
11 Ga0070666_10066964 3300005335 Bacteria 2438
12 Ga0070682_100008827 3300005337 Bacteria 5691
13 Ga0070660_100001569 3300005339 Bacteria 15719
14 Ga0070660_100005615 3300005339 Bacteria 8696
15 Ga0070660_100016404 3300005339 Bacteria 5375
16 Ga0070660_100089173 3300005339 Bacteria 2430
17 Ga0070689_100003395 3300005340 Bacteria 10587
18 Ga0070661_100005219 3300005344 Bacteria 8944
19 Ga0070671_100000042 3300005355 Bacteria 91321
20 Ga0070671_100147646 3300005355 Bacteria 1985
21 Ga0070674_100003884 3300005356 Bacteria 8459
22 Ga0070659_100020036 3300005366 Bacteria 5078
23 Ga0070694_100002386 3300005444 Bacteria 11103
24 Ga0070665_100000889 3300005548 Bacteria 38363
25 Ga0070665_100313630 3300005548 Bacteria 1572
26 Ga0068855_100139312 3300005563 Bacteria 2767
27 Ga0070664_100006603 3300005564 Bacteria 9353
28 Ga0070664_100010218 3300005564 Bacteria 7612
29 Ga0068863_100083460 3300005841 Bacteria 3027
30 Ga0068858_100007348 3300005842 Bacteria 10661
31 Ga0068862_100000426 3300005844 Bacteria 45871
32 Ga0081540_1000114 3300005983 Bacteria 85489
33 Ga0081540_1026738 3300005983 Bacteria 3285
34 Ga0081539_10001155 3300005985 Bacteria 47848
35 Ga0075366_10007448 3300006195 Bacteria 6047
36 Ga0075366_10038756 3300006195 Bacteria 2815
37 Ga0079104_1000009 3300006946 Bacteria 367015
38 Ga0105241_10017547 3300009174 Bacteria 5262
39 Ga0105248_10000567 3300009177 Bacteria 41994
40 Ga0105237_10045926 3300009545 Bacteria 4395
41 Ga0105239_10025941 3300010375 Bacteria 6452
42 Ga0157370_10001289 3300013104 Bacteria 31337
43 Ga0157369_10000288 3300013105 Bacteria 67504
44 Ga0157369_10012971 3300013105 Bacteria 9442
45 Ga0157374_10004367 3300013296 Bacteria 11900
46 Ga0228711_1003852 3300022739 Bacteria 23270
47 Ga0228710_1000581 3300022740 Bacteria 47908
48 Ga0209435_100072 3300025206 Bacteria 60184
49 Ga0209437_100117 3300025233 Bacteria 209271
50 Ga0209646_1000021 3300025246 Bacteria 461083
51 Ga0209026_1000669 3300025250 Bacteria 20731
52 Ga0209759_1000324 3300025256 Bacteria 63074
53 Ga0209565_1004377 3300025263 Bacteria 4310
54 Ga0209050_1000246 3300025298 Bacteria 116721
55 Ga0209256_1000019 3300025299 Bacteria 558627
56 Ga0209051_1000004 3300025303 Bacteria 1155596
57 Ga0209051_1000712 3300025303 Bacteria 36511
58 Ga0209257_1000038 3300025304 Bacteria 609032
59 Ga0209257_1000044 3300025304 Bacteria 486709
60 Ga0207680_10035396 3300025903 Bacteria 2867
61 Ga0207705_10111923 3300025909 Bacteria 2018
62 Ga0207671_10000005 3300025914 Bacteria 844816
63 Ga0207671_10178943 3300025914 Bacteria 1650
64 Ga0207657_10018522 3300025919 Bacteria 6642
65 Ga0207657_10021038 3300025919 Bacteria 6150
66 Ga0207649_10003454 3300025920 Bacteria 8635
67 Ga0207644_10000076 3300025931 Bacteria 72705
68 Ga0207644_10094205 3300025931 Bacteria 2237
69 Ga0207670_10066580 3300025936 Bacteria 2475
70 Ga0207669_10034708 3300025937 Bacteria 2861
71 Ga0207711_10000326 3300025941 Bacteria 50831
72 Ga0207679_10000320 3300025945 Bacteria 35996
73 Ga0207679_10001778 3300025945 Bacteria 13421
74 Ga0207679_10067280 3300025945 Bacteria 2687
75 Ga0207667_10251495 3300025949 Bacteria 1808
76 Ga0207703_10006109 3300026035 Bacteria 9637
77 Ga0207641_10090047 3300026088 Bacteria 2682
78 Ga0207641_10264851 3300026088 Bacteria 1611
79 Ga0209281_1000023 3300027111 Bacteria 519955
80 Ga0268266_10002849 3300028379 Bacteria 18022
81 Ga0268265_10000390 3300028380 Bacteria 46763
82 Ga0265334_10004054 3300028573 Bacteria 6571
83 Ga0265339_10014108 3300031249 Bacteria 4824
84 Ga0307513_10001667 3300031456 Bacteria 31752
85 Ga0307408_100000022 3300031548 Bacteria 310242
86 Ga0307414_10024010 3300032004 Bacteria 3879
87 Ga0373927_0108233 3300035695 Bacteria 1811
88 Ga0395899_0000475 3300037312 Bacteria 45347
89 Ga0395899_0067537 3300037312 Bacteria 2623
90 Ga0395900_0011353 3300037418 Bacteria 9113
91 Ga0395898_0000195 3300037466 Bacteria 155796
92 Ga0395898_0059825 3300037466 Bacteria 3704
93 Ga0395905_0000843 3300037471 Bacteria 40031
94 Ga0395905_0003047 3300037471 Bacteria 18148
95 Ga0395905_0040811 3300037471 Bacteria 4354
96 Ga0395905_0054031 3300037471 Bacteria 3759
97 Ga0395901_0000483 3300038443 Bacteria 46281
98 Ga0395901_0022010 3300038443 Bacteria 6534
99 Ga0400485_05261 3300038735 Bacteria 15732
100 Ga0400485_07624 3300038735 Bacteria 5616
101 Ga0400486_18976 3300038742 Bacteria 9013
102 Ga0400486_23610 3300038742 Bacteria 2787
103 Ga0400486_32030 3300038742 Bacteria 6026
104 Ga0400483_223866 3300039062 Bacteria 28642
105 Ga0400489_86613 3300039093 Bacteria 19564
106 Ga0400487_13327 3300039110 Bacteria 1727
107 Ga0400487_16318 3300039110 Bacteria 1730
108 Ga0436361_0850671 3300039447 Bacteria 2420
109 Ga0436363_1695237 3300039450 Bacteria 2657
110 Ga0451835_0269944 3300041492 Bacteria 4758
111 Ga0451853_1351475 3300041512 Bacteria 6319
112 Ga0439450_015757 3300042008 Bacteria 1553
113 Ga0450892_000882 3300042130 Bacteria 3265
114 Ga0450903_002787 3300042138 Bacteria 3080
115 Ga0466961_0002578 3300044693 Bacteria 11235
116 Ga0466963_0032466 3300044694 Bacteria 3381
117 Ga0453684_0007070 3300044712 Bacteria 20966
118 Ga0466968_0000313 3300044735 Bacteria 15607
119 Ga0495590_0009858 3300046457 Bacteria 3613
120 Ga0495629_0000048 3300046459 Bacteria 109659
121 Ga0495638_0009339 3300046460 Bacteria 6894
122 Ga0495651_0010801 3300046462 Bacteria 7019
123 Ga0495651_0081796 3300046462 Bacteria 2437
124 Ga0495653_0000348 3300046463 Bacteria 37747
125 Ga0495650_0004582 3300046471 Bacteria 9400
126 Ga0495580_0000294 3300046472 Bacteria 40576
127 Ga0495580_0007747 3300046472 Bacteria 8607
128 Ga0495580_0010635 3300046472 Bacteria 7150
129 Ga0495585_0000674 3300046492 Bacteria 31262
130 Ga0495596_0001987 3300046500 Bacteria 11256
131 Ga0495583_0000605 3300046506 Bacteria 48655
132 Ga0495583_0012228 3300046506 Bacteria 4872
133 Ga0495606_0001506 3300046507 Bacteria 30974
134 Ga0495606_0014773 3300046507 Bacteria 6066
135 Ga0495616_0000592 3300046513 Bacteria 27280
136 Ga0495618_0086035 3300046514 Bacteria 2010
137 Ga0495628_0004087 3300046516 Bacteria 12975
138 Ga0495628_0014934 3300046516 Bacteria 6494
139 Ga0495628_0112465 3300046516 Bacteria 2093
140 Ga0495630_0001270 3300046517 Bacteria 17401
141 Ga0495648_0052827 3300046524 Bacteria 2465
142 Ga0495666_0001295 3300046526 Bacteria 12085
143 Ga0495652_0000682 3300046529 Bacteria 39335
144 Ga0495640_0051865 3300046533 Bacteria 2818
145 Ga0495609_0008285 3300046538 Bacteria 5098
146 Ga0495609_0008763 3300046538 Bacteria 4926
147 Ga0495633_0001306 3300046558 Bacteria 19670
148 Ga0495599_0000636 3300046678 Bacteria 19817
149 Ga0495599_0080153 3300046678 Bacteria 2038
150 Ga0495623_0020219 3300046679 Bacteria 4302
151 Ga0495646_0011281 3300046680 Bacteria 5675
152 Ga0495646_0016848 3300046680 Bacteria 4641
153 Ga0495624_0000251 3300046690 Bacteria 42198
154 Ga0495624_0014395 3300046690 Bacteria 5368
155 Ga0495649_0029310 3300046694 Bacteria 3045
156 Ga0495589_0061549 3300046794 Bacteria 1842
157 Ga0495600_0001361 3300046809 Bacteria 13505
158 Ga0495660_0056339 3300046810 Bacteria 2124
159 Ga0495604_0000466 3300047317 Bacteria 35718
160 Ga0495604_0023756 3300047317 Bacteria 4892
161 Ga0495674_0035102 3300047319 Bacteria 4527
162 Ga0495683_0000061 3300047323 Bacteria 114589
163 Ga0495683_0004840 3300047323 Bacteria 7550
164 Ga0495687_012530 3300047443 Bacteria 4476
165 Ga0495675_0004949 3300047444 Bacteria 8116
166 Ga0495675_0013261 3300047444 Bacteria 5200
167 Ga0495679_000164 3300047446 Bacteria 59910
168 Ga0495673_0022219 3300047469 Bacteria 3113
169 Ga0495681_0000459 3300047470 Bacteria 31248
170 Ga0495686_0092082 3300047472 Bacteria 1839
171 Ga0495593_0002853 3300047673 Bacteria 10414
172 Ga0495602_0005719 3300048088 Bacteria 13040
173 Ga0495602_0012628 3300048088 Bacteria 8663
174 Ga0495626_0006603 3300048091 Bacteria 6577
175 Ga0495626_0026591 3300048091 Bacteria 2817
176 Ga0496118_0008684 3300048921 Bacteria 10444
177 Ga0496125_0002311 3300048928 Bacteria 25156
178 Ga0496126_0000391 3300048929 Bacteria 90061
179 Ga0496126_0051058 3300048929 Bacteria 3767
180 Ga0501068_0087068 3300049584 Bacteria 1923
181 Ga0501073_0006699 3300049589 Bacteria 8578
182 Ga0501073_0021190 3300049589 Bacteria 4687
183 Ga0501198_000006 3300049649 Bacteria 129954
184 Ga0501207_004988 3300049654 Bacteria 1824
185 Ga0501211_000728 3300049658 Bacteria 3352
186 Ga0501222_000007 3300049662 Bacteria 126703
187 Ga0501235_002615 3300049669 Bacteria 3876
188 Ga0501221_004384 3300049704 Bacteria 2341
189 Ga0501229_002424 3300049706 Bacteria 2199
190 Ga0501267_000090 3300049764 Bacteria 5563
191 Ga0501035_0001316 3300049822 Bacteria 25645
192 Ga0501044_0080804 3300049823 Bacteria 3292
193 nmdc:mga0k408_3269_c1 3300050493 Bacteria 8574
194 Ga0495601_0085050 3300053077 Bacteria 2032
195 Ga0500583_0009017 3300053092 Bacteria 3620
196 Ga0500583_0090462 3300053092 Bacteria 1489
197 Ga0500617_063518 3300053124 Bacteria 1630
198 Ga0500568_0013598 3300053139 Bacteria 3705
199 Ga0500574_000272 3300053141 Bacteria 6313
200 Ga0500588_0007309 3300053146 Bacteria 2542
201 Ga0500619_010024 3300053154 Bacteria 2377

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300009545 Ga0105237_10045926 Ga0105237_100459265 337
2 3300053092 Ga0500583_0090462 Ga0500583_0090462_22_1302 378
3 3300053146 Ga0500588_0007309 Ga0500588_0007309_1245_2525 378
4 3300028573 Ga0265334_10004054 Ga0265334_100040544 382
5 3300031249 Ga0265339_10014108 Ga0265339_100141084 382
6 3300009174 Ga0105241_10017547 Ga0105241_100175474 386
7 3300049764 Ga0501267_000090 Ga0501267_000090_4061_5281 386
8 3300003320 rootH2_10015438 rootH2_100154388 387
9 3300046810 Ga0495660_0056339 Ga0495660_0056339_121_1458 387
10 3300041492 Ga0451835_0269944 Ga0451835_0269944_1991_3310 389
11 3300041512 Ga0451853_1351475 Ga0451853_1351475_1924_3243 389
12 3300006195 Ga0075366_10038756 Ga0075366_100387563 390
13 3300006195 Ga0075366_10007448 Ga0075366_100074485 391
14 3300039110 Ga0400487_13327 Ga0400487_13327_476_1705 391
15 3300049584 Ga0501068_0087068 Ga0501068_0087068_238_1557 391
16 3300050493 nmdc:mga0k408_3269_c1 nmdc:mga0k408_3269_c1_5281_6600 391
17 3300049589 Ga0501073_0006699 Ga0501073_0006699_4664_5983 392
18 3300005339 Ga0070660_100005615 Ga0070660_10000561512 393
19 3300025909 Ga0207705_10111923 Ga0207705_101119233 393
20 3300025919 Ga0207657_10021038 Ga0207657_100210382 393
21 3300042008 Ga0439450_015757 Ga0439450_015757_82_1389 393
22 3300044735 Ga0466968_0000313 Ga0466968_0000313_13954_15264 393
23 3300053124 Ga0500617_063518 Ga0500617_063518_261_1589 394
24 3300005356 Ga0070674_100003884 Ga0070674_1000038841 396
25 3300035695 Ga0373927_0108233 Ga0373927_0108233_209_1534 399
26 3300046533 Ga0495640_0051865 Ga0495640_0051865_208_1533 399
27 3300003316 rootH1_10018849 rootH1_100188498 400
28 3300003322 rootL2_10107710 rootL2_1010771012 400
29 3300005339 Ga0070660_100089173 Ga0070660_1000891732 400
30 3300005344 Ga0070661_100005219 Ga0070661_10000521910 400
31 3300005366 Ga0070659_100020036 Ga0070659_1000200362 400
32 3300025920 Ga0207649_10003454 Ga0207649_100034548 400
33 3300025945 Ga0207679_10000320 Ga0207679_1000032026 400
34 3300053154 Ga0500619_010024 Ga0500619_010024_190_1536 400
35 3300005331 Ga0070670_100064744 Ga0070670_1000647444 401
36 3300005355 Ga0070671_100147646 Ga0070671_1001476462 401
37 3300005548 Ga0070665_100313630 Ga0070665_1003136302 401
38 3300005841 Ga0068863_100083460 Ga0068863_1000834602 401
39 3300025931 Ga0207644_10094205 Ga0207644_100942052 401
40 3300026088 Ga0207641_10090047 Ga0207641_100900474 401
41 3300013104 Ga0157370_10001289 Ga0157370_1000128919 405
42 3300031456 Ga0307513_10001667 Ga0307513_1000166725 405
43 3300005842 Ga0068858_100007348 Ga0068858_1000073487 406
44 3300010375 Ga0105239_10025941 Ga0105239_100259415 406
45 3300025914 Ga0207671_10178943 Ga0207671_101789432 406
46 3300026035 Ga0207703_10006109 Ga0207703_1000610911 406
47 3300039062 Ga0400483_223866 Ga0400483_223866_11092_12354 406
48 3300039093 Ga0400489_86613 Ga0400489_86613_3548_4810 406
49 3300044694 Ga0466963_0032466 Ga0466963_0032466_1821_3137 406
50 3300048928 Ga0496125_0002311 Ga0496125_0002311_10046_11377 406
51 3300048929 Ga0496126_0051058 Ga0496126_0051058_1507_2838 406
52 3300005564 Ga0070664_100010218 Ga0070664_1000102182 408
53 3300025945 Ga0207679_10067280 Ga0207679_100672803 408
54 3300046457 Ga0495590_0009858 Ga0495590_0009858_2336_3601 408
55 3300046694 Ga0495649_0029310 Ga0495649_0029310_13_1278 408
56 3300049589 Ga0501073_0021190 Ga0501073_0021190_2211_3521 410
57 iso_pu_bacteria 2738541337 2739055071 412
58 3300038443 Ga0395901_0022010 Ga0395901_0022010_5071_6516 413
59 3300049823 Ga0501044_0080804 Ga0501044_0080804_870_2198 413
60 3300025937 Ga0207669_10034708 Ga0207669_100347084 415
61 3300025303 Ga0209051_1000712 Ga0209051_100071213 416
62 3300038742 Ga0400486_23610 Ga0400486_23610_1284_2588 416
63 3300049822 Ga0501035_0001316 Ga0501035_0001316_1601_2926 416
64 3300026088 Ga0207641_10264851 Ga0207641_102648512 418
65 3300005339 Ga0070660_100016404 Ga0070660_1000164046 419
66 3300005564 Ga0070664_100006603 Ga0070664_10000660312 419
67 3300025919 Ga0207657_10018522 Ga0207657_100185222 419
68 3300025945 Ga0207679_10001778 Ga0207679_1000177811 419
69 3300044693 Ga0466961_0002578 Ga0466961_0002578_423_1730 419
70 3300049649 Ga0501198_000006 Ga0501198_000006_78658_79989 419
71 3300049662 Ga0501222_000007 Ga0501222_000007_38628_39959 419
72 iso_pu_bacteria 2928115317 2928116483 419
73 3300031548 Ga0307408_100000022 Ga0307408_10000002216 420
74 3300037312 Ga0395899_0000475 Ga0395899_0000475_32982_34295 420
75 3300037418 Ga0395900_0011353 Ga0395900_0011353_4197_5510 420
76 3300046492 Ga0495585_0000674 Ga0495585_0000674_12137_13447 420
77 3300046506 Ga0495583_0000605 Ga0495583_0000605_26883_28193 420
78 3300046513 Ga0495616_0000592 Ga0495616_0000592_13939_15249 420
79 3300046538 Ga0495609_0008763 Ga0495609_0008763_1011_2321 420
80 3300046558 Ga0495633_0001306 Ga0495633_0001306_7567_8877 420
81 3300047323 Ga0495683_0000061 Ga0495683_0000061_47384_48694 420
82 3300047470 Ga0495681_0000459 Ga0495681_0000459_20463_21773 420
83 3300002737 JGI25162J39368_1003779 JGI25162J39368_10037793 421
84 3300002738 JGI25154J39366_1000123 JGI25154J39366_100012334 421
85 3300013296 Ga0157374_10004367 Ga0157374_1000436713 421
86 3300025206 Ga0209435_100072 Ga0209435_10007224 421
87 3300025233 Ga0209437_100117 Ga0209437_10011769 421
88 3300025246 Ga0209646_1000021 Ga0209646_1000021110 421
89 3300025250 Ga0209026_1000669 Ga0209026_10006697 421
90 3300025256 Ga0209759_1000324 Ga0209759_100032419 421
91 3300025914 Ga0207671_10000005 Ga0207671_10000005554 421
92 3300046462 Ga0495651_0010801 Ga0495651_0010801_998_2344 421
93 3300046500 Ga0495596_0001987 Ga0495596_0001987_3212_4519 421
94 3300046507 Ga0495606_0001506 Ga0495606_0001506_18970_20277 421
95 3300046514 Ga0495618_0086035 Ga0495618_0086035_305_1651 421
96 3300046516 Ga0495628_0112465 Ga0495628_0112465_467_1813 421
97 3300046529 Ga0495652_0000682 Ga0495652_0000682_11135_12481 421
98 3300046678 Ga0495599_0000636 Ga0495599_0000636_12246_13592 421
99 3300046809 Ga0495600_0001361 Ga0495600_0001361_9209_10555 421
100 3300047323 Ga0495683_0004840 Ga0495683_0004840_4715_6022 421
101 3300048088 Ga0495602_0005719 Ga0495602_0005719_2795_4141 421
102 3300048091 Ga0495626_0026591 Ga0495626_0026591_457_1764 421
103 3300053077 Ga0495601_0085050 Ga0495601_0085050_492_1838 421
104 3300053092 Ga0500583_0009017 Ga0500583_0009017_752_2068 421
105 3300053141 Ga0500574_000272 Ga0500574_000272_293_1639 421
106 iso_pu_bacteria 2585428057 2587725839 421
107 3300005335 Ga0070666_10066964 Ga0070666_100669642 422
108 3300005355 Ga0070671_100000042 Ga0070671_10000004233 422
109 3300005548 Ga0070665_100000889 Ga0070665_10000088927 422
110 3300005844 Ga0068862_100000426 Ga0068862_10000042627 422
111 3300009177 Ga0105248_10000567 Ga0105248_1000056727 422
112 3300013105 Ga0157369_10000288 Ga0157369_1000028816 422
113 3300025903 Ga0207680_10035396 Ga0207680_100353962 422
114 3300025931 Ga0207644_10000076 Ga0207644_1000007655 422
115 3300025941 Ga0207711_10000326 Ga0207711_1000032627 422
116 3300028379 Ga0268266_10002849 Ga0268266_1000284913 422
117 3300028380 Ga0268265_10000390 Ga0268265_1000039017 422
118 3300037466 Ga0395898_0000195 Ga0395898_0000195_90252_91580 422
119 3300037471 Ga0395905_0000843 Ga0395905_0000843_25403_26725 422
120 3300038443 Ga0395901_0000483 Ga0395901_0000483_15016_16344 422
121 3300044712 Ga0453684_0007070 Ga0453684_0007070_8224_9651 422
122 3300003775 Ga0055524_1000046 Ga0055524_100004680 423
123 3300006946 Ga0079104_1000009 Ga0079104_100000923 423
124 3300025263 Ga0209565_1004377 Ga0209565_10043773 423
125 3300025299 Ga0209256_1000019 Ga0209256_100001969 423
126 3300027111 Ga0209281_1000023 Ga0209281_1000023364 423
127 3300037471 Ga0395905_0054031 Ga0395905_0054031_1869_3197 423
128 iso_pu_bacteria 2738541337 2739053917 423
129 iso_pu_bacteria 2643221544 2643744502 424
130 3300005339 Ga0070660_100001569 Ga0070660_1000015695 425
131 iso_pu_bacteria 3002141150 3002145876 425
132 3300038735 Ga0400485_07624 Ga0400485_07624_1126_2448 426
133 3300038742 Ga0400486_32030 Ga0400486_32030_4088_5410 426
134 3300039110 Ga0400487_16318 Ga0400487_16318_66_1388 426
135 iso_pu_bacteria 2643221585 2643933672 426
136 iso_pu_bacteria 2643221656 2644315172 426
137 3300005340 Ga0070689_100003395 Ga0070689_10000339513 427
138 3300025936 Ga0207670_10066580 Ga0207670_100665803 427
139 3300037471 Ga0395905_0003047 Ga0395905_0003047_11798_13120 427
140 3300038735 Ga0400485_05261 Ga0400485_05261_6623_7948 427
141 3300038742 Ga0400486_18976 Ga0400486_18976_7192_8517 427
142 iso_pu_bacteria 2643221639 2644220719 427
143 iso_pu_bacteria 2643221646 2644259654 427
144 3300032004 Ga0307414_10024010 Ga0307414_100240106 428
145 3300042130 Ga0450892_000882 Ga0450892_000882_1796_3121 428
146 3300042138 Ga0450903_002787 Ga0450903_002787_1306_2631 428
147 3300049654 Ga0501207_004988 Ga0501207_004988_451_1776 428
148 3300049658 Ga0501211_000728 Ga0501211_000728_376_1701 428
149 3300049669 Ga0501235_002615 Ga0501235_002615_1364_2689 428
150 3300049704 Ga0501221_004384 Ga0501221_004384_901_2226 428
151 3300049706 Ga0501229_002424 Ga0501229_002424_338_1663 428
152 iso_pu_bacteria 2510065057 2510305516 428
153 iso_pu_bacteria 2513237091 2513615858 428
154 iso_pu_bacteria 2513237140 2513883587 428
155 iso_pu_bacteria 2517487022 2517568100 428
156 iso_pu_bacteria 2657244999 2657685770 428
157 iso_pu_bacteria 2791355082 2792584325 428
158 iso_pu_bacteria 2802429268 2804754965 428
159 iso_pu_bacteria 2838661181 2838666867 428
160 iso_pu_bacteria 2916000859 2916004164 428
161 iso_pu_bacteria 2921257292 2921258187 428
162 iso_pu_bacteria 2924179722 2924182842 428
163 iso_pu_bacteria 2937023124 2937024842 428
164 iso_pu_bacteria 2937113482 2937113626 428
165 iso_pu_bacteria 2957382221 2957383463 428
166 iso_pu_bacteria 2957395598 2957397690 428
167 iso_pu_bacteria 2957402308 2957408663 428
168 iso_pu_bacteria 2960597568 2960597732 428
169 iso_pu_bacteria 2960610863 2960613394 428
170 iso_pu_bacteria 2960667422 2960669421 428
171 iso_pu_bacteria 2964615318 2964615640 428
172 iso_pu_bacteria 2967755722 2967758093 428
173 iso_pu_bacteria 2970095765 2970099846 428
174 iso_pu_bacteria 2970102677 2970105486 428
175 iso_pu_bacteria 8003992118 8003998461 428
176 iso_pu_bacteria 8049293176 8049294166 428
177 3300005337 Ga0070682_100008827 Ga0070682_1000088277 429
178 3300005985 Ga0081539_10001155 Ga0081539_100011559 429
179 3300003792 Ga0055540_1000007 Ga0055540_1000007279 430
180 3300003794 Ga0055531_10006313 Ga0055531_100063138 430
181 3300005444 Ga0070694_100002386 Ga0070694_1000023864 430
182 3300025298 Ga0209050_1000246 Ga0209050_100024623 430
183 3300025303 Ga0209051_1000004 Ga0209051_1000004333 430
184 3300025304 Ga0209257_1000038 Ga0209257_1000038467 430
185 3300025304 Ga0209257_1000044 Ga0209257_100004492 430
186 3300037471 Ga0395905_0040811 Ga0395905_0040811_2110_3450 430
187 3300053139 Ga0500568_0013598 Ga0500568_0013598_1211_2548 431
188 iso_pu_bacteria 2857357740 2857365339 431
189 3300022739 Ga0228711_1003852 Ga0228711_100385212 432
190 3300022740 Ga0228710_1000581 Ga0228710_100058114 432
191 3300005983 Ga0081540_1000114 Ga0081540_10001149 434
192 3300005983 Ga0081540_1026738 Ga0081540_10267384 434
193 3300013105 Ga0157369_10012971 Ga0157369_100129717 435
194 3300039447 Ga0436361_0850671 Ga0436361_0850671_975_2324 435
195 3300039450 Ga0436363_1695237 Ga0436363_1695237_172_1521 435
196 3300046459 Ga0495629_0000048 Ga0495629_0000048_22997_24346 435
197 3300046460 Ga0495638_0009339 Ga0495638_0009339_265_1614 435
198 3300046462 Ga0495651_0081796 Ga0495651_0081796_241_1590 435
199 3300046463 Ga0495653_0000348 Ga0495653_0000348_30395_31744 435
200 3300046471 Ga0495650_0004582 Ga0495650_0004582_2618_3967 435
201 3300046472 Ga0495580_0000294 Ga0495580_0000294_30085_31434 435
202 3300046472 Ga0495580_0007747 Ga0495580_0007747_5242_6591 435
203 3300046472 Ga0495580_0010635 Ga0495580_0010635_4653_6002 435
204 3300046506 Ga0495583_0012228 Ga0495583_0012228_2225_3574 435
205 3300046507 Ga0495606_0014773 Ga0495606_0014773_2189_3538 435
206 3300046516 Ga0495628_0004087 Ga0495628_0004087_5113_6462 435
207 3300046516 Ga0495628_0014934 Ga0495628_0014934_3966_5315 435
208 3300046517 Ga0495630_0001270 Ga0495630_0001270_11160_12509 435
209 3300046524 Ga0495648_0052827 Ga0495648_0052827_450_1799 435
210 3300046526 Ga0495666_0001295 Ga0495666_0001295_2271_3620 435
211 3300046538 Ga0495609_0008285 Ga0495609_0008285_3162_4511 435
212 3300046678 Ga0495599_0080153 Ga0495599_0080153_571_1920 435
213 3300046679 Ga0495623_0020219 Ga0495623_0020219_2681_4030 435
214 3300046680 Ga0495646_0011281 Ga0495646_0011281_555_1904 435
215 3300046680 Ga0495646_0016848 Ga0495646_0016848_2671_4020 435
216 3300046690 Ga0495624_0000251 Ga0495624_0000251_15158_16507 435
217 3300046690 Ga0495624_0014395 Ga0495624_0014395_576_1925 435
218 3300046794 Ga0495589_0061549 Ga0495589_0061549_212_1561 435
219 3300047317 Ga0495604_0000466 Ga0495604_0000466_8744_10093 435
220 3300047317 Ga0495604_0023756 Ga0495604_0023756_2017_3366 435
221 3300047319 Ga0495674_0035102 Ga0495674_0035102_2295_3644 435
222 3300047443 Ga0495687_012530 Ga0495687_012530_2955_4304 435
223 3300047444 Ga0495675_0004949 Ga0495675_0004949_751_2100 435
224 3300047444 Ga0495675_0013261 Ga0495675_0013261_3107_4456 435
225 3300047446 Ga0495679_000164 Ga0495679_000164_22630_23979 435
226 3300047469 Ga0495673_0022219 Ga0495673_0022219_766_2115 435
227 3300047472 Ga0495686_0092082 Ga0495686_0092082_47_1396 435
228 3300047673 Ga0495593_0002853 Ga0495593_0002853_3822_5171 435
229 3300048088 Ga0495602_0012628 Ga0495602_0012628_3579_4928 435
230 3300048091 Ga0495626_0006603 Ga0495626_0006603_4562_5911 435
231 3300048921 Ga0496118_0008684 Ga0496118_0008684_9052_10401 435
232 3300048929 Ga0496126_0000391 Ga0496126_0000391_49236_50585 435
233 3300037312 Ga0395899_0067537 Ga0395899_0067537_786_2135 436
234 3300037466 Ga0395898_0059825 Ga0395898_0059825_1594_2943 436
235 3300005563 Ga0068855_100139312 Ga0068855_1001393123 442
236 3300025949 Ga0207667_10251495 Ga0207667_102514952 442
237 3300001979 JGI24740J21852_10022535 JGI24740J21852_100225352 447

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00006

ATP-synt_ab

ATP synthase alpha/beta family, nucleotide-binding domain

157

367

0.99

PF18269

T3SS_ATPase_C

T3SS EscN ATPase C-terminal domain

374

442

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
4nph-assembly1.cif.gz_A crystal structure of ssan from salmonella enterica 0.955 105 447
4nph-assembly1.cif.gz_A crystal structure of ssan from salmonella enterica 0.9493 105 447
2obl-assembly1.cif.gz_A structural and biochemical analysis of a prototypical atpase from the type iii secretion system of pathogenic bacteria 0.9459 102 447
5zt1-assembly2.cif.gz_A structure of the bacterial pathogens atpase with substrate atp gamma s 0.944 104 445
2obl-assembly1.cif.gz_A structural and biochemical analysis of a prototypical atpase from the type iii secretion system of pathogenic bacteria 0.9433 102 447
ID Description Score Start End Superfamily
2dpyB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9779 101 367 3.40.50.300
2dpyB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9672 101 367 3.40.50.300
4nphA02 Mainly Alpha;Up-down Bundle;Substrate Binding Domain Of Dnak; Chain:A; Domain 2; 0.9612 374 447 1.20.1270.330
af_A0A0R0JZ78_6_157_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9559 232 368 3.40.50.300
4nphA02 Mainly Alpha;Up-down Bundle;Substrate Binding Domain Of Dnak; Chain:A; Domain 2; 0.9489 374 447 1.20.1270.330
ID Description Score Start End GO Terms
AF-A0A3C0ASQ7-F1-model_v4 EscN/YscN/HrcN family type III secretion system ATPase 0.9963 135 264 GO:0005524
GO:0045261
GO:0046933
AF-A0A292RWU3-F1-model_v4 EscN/YscN/HrcN family type III secretion system ATPase 0.9946 349 446 GO:0005524
AF-A0A2G1YHL5-F1-model_v4 Flagellum-specific ATP synthase FliI 0.9918 135 447 GO:0005524
GO:0005737
GO:0016887
GO:0030254
GO:0030257
GO:0045261
GO:0046933
GO:0046961
AF-A0A645EJ69-F1-model_v4 Putative ATP synthase YscN 0.9905 177 446 GO:0005524
GO:0005737
GO:0016887
GO:0030254
GO:0030257
GO:0045261
GO:0046933
AF-A0A2N7PXM3-F1-model_v4 EscN/YscN/HrcN family type III secretion system ATPase 0.9884 138 447 GO:0005524
GO:0005737
GO:0016887
GO:0030254
GO:0030257
GO:0045261
GO:0046933
GO:0046961

Feature Viewer

pLDDT pTM Quality
88.64 0.84 High
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Predicted Structure (AlphaFold2)

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