F348660

General Info

Members Datasets Scaffolds Average Seq Length
235 180 470 336

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8056829672|8056836035
Length 390
Sequence VSRPTLEAVAARAGVSRATVSRVVNGGDGVRAPLAERVRQAVAELGYVPNQAARSLVTKRHDAVAVVIAEPETRVFADPFFALQLRGISKELTAHDNQLVLLLTEGRDDHARVARYLSGGHVDGALVFSLHLDDPLPGLIQDAGVPTVFGGRPGWGDEGRGAGPARPTAKDPGVVYVDCDNRGGARAAVRHLMGLGRTRIAHLTGVLDQTSAVDRLDGYRDVMGEVPGGNDPRLVVESDFTPAGGERAMRELLDRCPDVDAVFAANDLTALGALRVLRASGRRVPDDVAVIGFDDMLPVAEEADPPLTTVRQDIEGMGRLMARLLLRGLSDGRDRTDDRDRPDGRGTTDGCDRTDARGRTDGLDRTGSAVDEPHAGGVILPTTLIRRVSA

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
3 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
4 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
5 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
6 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
7 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
8 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
9 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
10 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
11 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
12 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
13 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
14 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
15 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
16 3300009988 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_233 metaG Metagenome Rhizosphere
17 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
18 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
19 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
20 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
21 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
28 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
29 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
30 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
31 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
32 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
33 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
34 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
35 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
36 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
37 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
38 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
39 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
40 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
41 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
42 3300042136 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530F_E14_072516_1294 Metagenome Rhizosphere
43 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
44 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
45 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
46 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
47 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
48 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
49 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
50 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
51 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
52 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
53 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
54 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
55 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
56 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
57 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
58 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
59 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
60 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
61 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
62 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
63 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
64 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
65 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
66 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
67 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
68 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
69 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
70 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
71 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
72 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
73 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
74 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
75 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
76 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
77 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
78 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
79 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
80 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
81 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
82 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
83 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
84 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
85 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
86 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
87 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
88 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
89 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
90 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
91 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
92 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
93 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
94 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
95 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
96 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
97 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
98 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
99 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
100 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
101 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
102 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
103 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
104 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
105 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
106 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
107 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
108 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
109 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
110 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
111 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
112 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
113 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
124 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
125 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
126 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
129 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
130 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
131 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
132 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
133 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
134 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
135 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
136 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
137 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
138 3300053143 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 endosphere Metagenome Endosphere
139 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
140 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
141 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
142 3300053732 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 endosphere Metagenome Endosphere
143 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
144 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere
145 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
146 2558860280 Kutzneria sp. 744 Isolate Unclassified
147 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
148 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
149 2643221548 Streptomyces sp. Root55 Isolate Unclassified
150 2643221578 Streptomyces sp. Root63 Isolate Unclassified
151 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
152 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
153 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
154 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
155 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
156 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
157 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
158 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
159 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
160 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
161 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
162 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
163 2862705112 Streptomyces triticirhizae NEAU-YY642 Isolate Rhizosphere
164 2867369537 Streptomyces sp. Z26 Isolate Unclassified
165 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
166 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
167 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
168 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
169 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
170 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
171 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
172 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
173 2990044586 Streptomyces sedi JCM 16909 Isolate Unclassified
174 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
175 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
176 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
177 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
178 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
179 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified
180 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 84.26
Metatranscriptomes 0
Isolates 15.74

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.11
Nodule 0
Rhizoplane 2.98
Rhizosphere 80.85
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100007192 3300005329 Bacteria 9386
2 Ga0070659_100210678 3300005366 Bacteria 1602
3 Ga0070710_10002040 3300005437 Bacteria 9567
4 Ga0070710_10013445 3300005437 Bacteria 4101
5 Ga0070678_100218857 3300005456 Bacteria 1582
6 Ga0070679_100134367 3300005530 Bacteria 2455
7 Ga0068853_100010706 3300005539 Bacteria 7428
8 Ga0070693_100008554 3300005547 Bacteria 5054
9 Ga0070664_100015733 3300005564 Bacteria 6190
10 Ga0068857_100043092 3300005577 Bacteria 4004
11 Ga0068856_100020085 3300005614 Bacteria 6487
12 Ga0070702_100006450 3300005615 Bacteria 5553
13 Ga0105251_10063991 3300009011 Bacteria 1725
14 Ga0105243_10008418 3300009148 Bacteria 7917
15 Ga0105241_10010054 3300009174 Bacteria 6945
16 Ga0105238_10007307 3300009551 Bacteria 11060
17 Ga0105238_10037307 3300009551 Bacteria 4941
18 Ga0105035_101070 3300009988 Bacteria 1816
19 Ga0105239_10054296 3300010375 Bacteria 4394
20 Ga0105246_10088846 3300011119 Bacteria 2222
21 Ga0157372_10165745 3300013307 Bacteria 2555
22 Ga0183367_1001 3300015688 Bacteria 1225545
23 Ga0207692_10006113 3300025898 Bacteria 4871
24 Ga0207692_10007602 3300025898 Bacteria 4445
25 Ga0207694_10074089 3300025924 Bacteria 2664
26 Ga0207661_10055365 3300025944 Bacteria 3181
27 Ga0207703_10073081 3300026035 Bacteria 2836
28 Ga0207708_10029776 3300026075 Bacteria 4139
29 Ga0207674_10016479 3300026116 Bacteria 8088
30 Ga0307517_10003710 3300028786 Bacteria 23732
31 Ga0307515_10056781 3300028794 Bacteria 5681
32 Ga0307511_10004839 3300030521 Bacteria 13764
33 Ga0307512_10002995 3300030522 Bacteria 20368
34 Ga0307512_10035966 3300030522 Bacteria 4209
35 Ga0307512_10063259 3300030522 Bacteria 2830
36 Ga0316177_1174489 3300030731 Bacteria 4401
37 Ga0316180_1099496 3300030736 Bacteria 1578
38 Ga0307514_10024468 3300031649 Bacteria 4888
39 Ga0316576_10058763 3300031727 Bacteria 2813
40 Ga0307414_10162949 3300032004 Bacteria 1774
41 Ga0307510_10157218 3300033180 Bacteria 1878
42 Ga0316584_0016424 3300036712 Bacteria 5306
43 Ga0395900_0306701 3300037418 Bacteria 1572
44 Ga0395898_0003491 3300037466 Bacteria 17565
45 Ga0395898_0005101 3300037466 Bacteria 14228
46 Ga0439439_0007918 3300041406 Bacteria 2498
47 Ga0439442_033397 3300042002 Bacteria 1076
48 Ga0450900_008067 3300042136 Bacteria 1309
49 Ga0466969_0012119 3300044656 Bacteria 4557
50 Ga0466969_0015117 3300044656 Bacteria 4048
51 Ga0466969_0022641 3300044656 Bacteria 3243
52 Ga0466972_0001816 3300044658 Bacteria 10465
53 Ga0466972_0004996 3300044658 Bacteria 6650
54 Ga0466972_0005678 3300044658 Bacteria 6256
55 Ga0466972_0015503 3300044658 Bacteria 3809
56 Ga0466965_0000344 3300044683 Bacteria 15691
57 Ga0466965_0002183 3300044683 Bacteria 8233
58 Ga0466965_0004908 3300044683 Bacteria 5977
59 Ga0466965_0008661 3300044683 Bacteria 4708
60 Ga0466965_0057557 3300044683 Bacteria 1937
61 Ga0466965_0073010 3300044683 Bacteria 1727
62 Ga0466965_0107404 3300044683 Bacteria 1432
63 Ga0466966_0018892 3300044684 Bacteria 4541
64 Ga0466966_0046060 3300044684 Bacteria 2786
65 Ga0466966_0106381 3300044684 Bacteria 1731
66 Ga0466961_0001372 3300044693 Bacteria 15037
67 Ga0466961_0039974 3300044693 Bacteria 3006
68 Ga0466961_0077471 3300044693 Bacteria 2106
69 Ga0466963_0003070 3300044694 Bacteria 9458
70 Ga0466963_0045814 3300044694 Bacteria 2881
71 Ga0466964_0003113 3300044706 Bacteria 6031
72 Ga0453684_0001129 3300044712 Bacteria 83588
73 Ga0466971_0007203 3300044719 Bacteria 4843
74 Ga0466968_0043311 3300044735 Bacteria 1905
75 Ga0466970_0000425 3300044765 Bacteria 20644
76 Ga0466970_0048030 3300044765 Bacteria 2275
77 Ga0466957_0004266 3300044842 Bacteria 7924
78 Ga0466957_0050748 3300044842 Bacteria 2525
79 Ga0466960_0002848 3300044901 Bacteria 6561
80 Ga0466959_0003743 3300045049 Bacteria 10060
81 Ga0466959_0004072 3300045049 Bacteria 9729
82 Ga0466959_0295065 3300045049 Bacteria 1111
83 Ga0466958_0006290 3300045836 Bacteria 6452
84 Ga0466958_0032769 3300045836 Bacteria 3092
85 Ga0466967_0007414 3300045976 Bacteria 7911
86 Ga0466967_0044824 3300045976 Bacteria 3839
87 Ga0495592_0009501 3300046454 Bacteria 7314
88 Ga0495603_0001963 3300046455 Bacteria 12124
89 Ga0495603_0013639 3300046455 Bacteria 4917
90 Ga0495603_0024221 3300046455 Bacteria 3670
91 Ga0495629_0000446 3300046459 Bacteria 34452
92 Ga0495629_0001434 3300046459 Bacteria 18787
93 Ga0495629_0008255 3300046459 Bacteria 7657
94 Ga0495651_0001517 3300046462 Bacteria 17953
95 Ga0495580_0015938 3300046472 Bacteria 5657
96 Ga0495605_0004582 3300046474 Bacteria 8093
97 Ga0495662_0000152 3300046476 Bacteria 27216
98 Ga0495594_0017754 3300046499 Bacteria 3762
99 Ga0495594_0033370 3300046499 Bacteria 2798
100 Ga0495594_0040960 3300046499 Bacteria 2536
101 Ga0495607_0100374 3300046501 Bacteria 1551
102 Ga0495583_0040115 3300046506 Bacteria 2201
103 Ga0495606_0005254 3300046507 Bacteria 12489
104 Ga0495620_0001845 3300046515 Bacteria 12477
105 Ga0495620_0010820 3300046515 Bacteria 4797
106 Ga0495628_0011926 3300046516 Bacteria 7330
107 Ga0495628_0156789 3300046516 Bacteria 1731
108 Ga0495631_0016304 3300046518 Bacteria 3545
109 Ga0495643_0008362 3300046522 Bacteria 6558
110 Ga0495666_0010614 3300046526 Bacteria 4591
111 Ga0495666_0014685 3300046526 Bacteria 3897
112 Ga0495652_0047373 3300046529 Bacteria 3686
113 Ga0495652_0136088 3300046529 Bacteria 1938
114 Ga0495665_0010708 3300046531 Bacteria 4967
115 Ga0495640_0008948 3300046533 Bacteria 7818
116 Ga0495640_0014301 3300046533 Bacteria 6009
117 Ga0495586_0005745 3300046535 Bacteria 6632
118 Ga0495587_0047396 3300046536 Bacteria 2548
119 Ga0495609_0074776 3300046538 Bacteria 1485
120 Ga0495645_0040888 3300046543 Bacteria 3380
121 Ga0495622_0006479 3300046557 Bacteria 5430
122 Ga0495622_0007895 3300046557 Bacteria 4937
123 Ga0495633_0010041 3300046558 Bacteria 5193
124 Ga0495634_0048553 3300046642 Bacteria 2857
125 Ga0495611_0014801 3300046648 Bacteria 3335
126 Ga0495625_0080907 3300046660 Bacteria 2261
127 Ga0495635_0026490 3300046663 Bacteria 4033
128 Ga0495657_0026548 3300046675 Bacteria 4100
129 Ga0495623_0011382 3300046679 Bacteria 5756
130 Ga0495623_0121314 3300046679 Bacteria 1573
131 Ga0495613_0002431 3300046689 Bacteria 14050
132 Ga0495613_0003772 3300046689 Bacteria 11356
133 Ga0495624_0086951 3300046690 Bacteria 1930
134 Ga0495670_0005373 3300046691 Bacteria 6296
135 Ga0495671_0154653 3300046692 Bacteria 1116
136 Ga0495600_0137176 3300046809 Bacteria 1588
137 Ga0495660_0029023 3300046810 Bacteria 3123
138 Ga0495604_0000138 3300047317 Bacteria 62183
139 Ga0495674_0356856 3300047319 Bacteria 1186
140 Ga0495676_0021290 3300047321 Bacteria 5666
141 Ga0495676_0029648 3300047321 Bacteria 4657
142 Ga0495676_0033685 3300047321 Bacteria 4309
143 Ga0495676_0099826 3300047321 Bacteria 2150
144 Ga0495687_029071 3300047443 Bacteria 2563
145 Ga0495687_032740 3300047443 Bacteria 2368
146 Ga0495675_0096997 3300047444 Bacteria 1848
147 Ga0495685_001213 3300047447 Bacteria 7905
148 Ga0495685_003934 3300047447 Bacteria 4769
149 Ga0495681_0007856 3300047470 Bacteria 6746
150 Ga0495593_0036515 3300047673 Bacteria 2665
151 Ga0495614_0008279 3300048089 Bacteria 4629
152 Ga0496101_0023419 3300048904 Bacteria 4266
153 Ga0496102_0114535 3300048905 Bacteria 2516
154 Ga0496106_0433280 3300048909 Bacteria 1056
155 Ga0496108_0133487 3300048911 Bacteria 2134
156 Ga0496109_0007532 3300048912 Bacteria 9225
157 Ga0496112_0051293 3300048915 Bacteria 4047
158 Ga0496114_0131383 3300048917 Bacteria 2162
159 Ga0495678_027619 3300049459 Bacteria 2406
160 Ga0501033_0001052 3300049570 Bacteria 25193
161 Ga0501034_0002524 3300049571 Bacteria 21942
162 Ga0501034_0067720 3300049571 Bacteria 3582
163 Ga0501036_0000952 3300049572 Bacteria 21786
164 Ga0501037_0082202 3300049573 Bacteria 2334
165 Ga0501038_0020024 3300049574 Bacteria 6023
166 Ga0501039_0002741 3300049575 Bacteria 13131
167 Ga0501042_0061911 3300049578 Bacteria 2673
168 Ga0501043_0000335 3300049579 Bacteria 42702
169 Ga0501047_0170330 3300049581 Bacteria 2046
170 Ga0501047_0225411 3300049581 Bacteria 1729
171 Ga0501048_0120842 3300049582 Bacteria 1851
172 Ga0501069_0079559 3300049585 Bacteria 1845
173 Ga0501070_0005270 3300049586 Bacteria 11027
174 Ga0501070_0092100 3300049586 Bacteria 2509
175 Ga0501074_0003369 3300049590 Bacteria 11322
176 Ga0501035_0003457 3300049822 Bacteria 15115
177 Ga0501044_0008291 3300049823 Bacteria 11392
178 Ga0501044_0044343 3300049823 Bacteria 4614
179 Ga0501044_0062223 3300049823 Bacteria 3815
180 Ga0501044_0085768 3300049823 Bacteria 3181
181 Ga0501045_0291271 3300049824 Bacteria 1215
182 Ga0495601_0000927 3300053077 Bacteria 15981
183 Ga0495601_0069897 3300053077 Bacteria 2240
184 Ga0500610_0156416 3300053079 Bacteria 1138
185 Ga0495619_0164472 3300053085 Bacteria 1533
186 Ga0500578_0024628 3300053086 Bacteria 3862
187 Ga0500560_002668 3300053107 Bacteria 3461
188 Ga0500569_007355 3300053109 Bacteria 2466
189 Ga0500652_001544 3300053131 Bacteria 7050
190 Ga0500658_0048577 3300053134 Bacteria 1725
191 Ga0500561_0019072 3300053137 Bacteria 1583
192 Ga0500579_048270 3300053143 Bacteria 2622
193 Ga0500600_0007109 3300053149 Bacteria 6715
194 Ga0500616_0003112 3300053153 Bacteria 12968
195 Ga0500633_0069577 3300053160 Bacteria 1254
196 Ga0500656_005586 3300053732 Bacteria 1247
197 Ga0466962_0002080 3300061719 Bacteria 9473
198 Ga0466962_0015729 3300061719 Bacteria 3649
199 8056836035 8056829672 Bacteria 9045328
200 2554260828 2554235005 Bacteria 6457341
201 2559429993 2558860280 Bacteria 11429938
202 2585301964 2582581312 Bacteria 7308206
203 2616901281 2616644941 Bacteria 8510691
204 2643765022 2643221548 Bacteria 8053412
205 2643900792 2643221578 Bacteria 9213798
206 2643944232 2643221587 Bacteria 7586415
207 2644404987 2643221673 Bacteria 9196637
208 2644431078 2643221677 Bacteria 7584031
209 2644461139 2643221682 Bacteria 6743283
210 2811843301 2808606982 Bacteria 7791042
211 2812354461 2811994879 Bacteria 9313447
212 2812483530 2811994917 Bacteria 7761064
213 2819696245 2818991463 Bacteria 7948711
214 2852636081 2852635781 Bacteria 8251373
215 2862184278 2862178590 Bacteria 8583590
216 2862281872 2862281513 Bacteria 9621493
217 2862512143 2862507626 Bacteria 9425308
218 2862710657 2862705112 Bacteria 6563286
219 2867370293 2867369537 Bacteria 6501581
220 2873152701 2873151551 Bacteria 8625867
221 2875395659 2875391855 Bacteria 7600475
222 2912729033 2912723979 Bacteria 8557534
223 2918508178 2918501144 Bacteria 8668083
224 2946048977 2946045630 Bacteria 8527308
225 2946071241 2946064051 Bacteria 8957905
226 2947225502 2947224130 Bacteria 9938529
227 2966599590 2966598605 Bacteria 7676064
228 2990047084 2990044586 Bacteria 6603797
229 2990090079 2990088156 Bacteria 6657676
230 3006396632 3006393351 Bacteria 6615579
231 3006488946 3006486233 Bacteria 8157040
232 8008489199 8008485437 Bacteria 7198341
233 8008575938 8008574985 Bacteria 7815457
234 8025527650 8025524527 Bacteria 7197316
235 8047713501 8047710418 Bacteria 11023148
236 Ga0070683_100007192
237 Ga0070659_100210678
238 Ga0070710_10002040
239 Ga0070710_10013445
240 Ga0070678_100218857
241 Ga0070679_100134367
242 Ga0068853_100010706
243 Ga0070693_100008554
244 Ga0070664_100015733
245 Ga0068857_100043092
246 Ga0068856_100020085
247 Ga0070702_100006450
248 Ga0105251_10063991
249 Ga0105243_10008418
250 Ga0105241_10010054
251 Ga0105238_10007307
252 Ga0105238_10037307
253 Ga0105035_101070
254 Ga0105239_10054296
255 Ga0105246_10088846
256 Ga0157372_10165745
257 Ga0183367_1001
258 Ga0207692_10006113
259 Ga0207692_10007602
260 Ga0207694_10074089
261 Ga0207661_10055365
262 Ga0207703_10073081
263 Ga0207708_10029776
264 Ga0207674_10016479
265 Ga0307517_10003710
266 Ga0307515_10056781
267 Ga0307511_10004839
268 Ga0307512_10002995
269 Ga0307512_10035966
270 Ga0307512_10063259
271 Ga0316177_1174489
272 Ga0316180_1099496
273 Ga0307514_10024468
274 Ga0316576_10058763
275 Ga0307414_10162949
276 Ga0307510_10157218
277 Ga0316584_0016424
278 Ga0395900_0306701
279 Ga0395898_0003491
280 Ga0395898_0005101
281 Ga0439439_0007918
282 Ga0439442_033397
283 Ga0450900_008067
284 Ga0466969_0012119
285 Ga0466969_0015117
286 Ga0466969_0022641
287 Ga0466972_0001816
288 Ga0466972_0004996
289 Ga0466972_0005678
290 Ga0466972_0015503
291 Ga0466965_0000344
292 Ga0466965_0002183
293 Ga0466965_0004908
294 Ga0466965_0008661
295 Ga0466965_0057557
296 Ga0466965_0073010
297 Ga0466965_0107404
298 Ga0466966_0018892
299 Ga0466966_0046060
300 Ga0466966_0106381
301 Ga0466961_0001372
302 Ga0466961_0039974
303 Ga0466961_0077471
304 Ga0466963_0003070
305 Ga0466963_0045814
306 Ga0466964_0003113
307 Ga0453684_0001129
308 Ga0466971_0007203
309 Ga0466968_0043311
310 Ga0466970_0000425
311 Ga0466970_0048030
312 Ga0466957_0004266
313 Ga0466957_0050748
314 Ga0466960_0002848
315 Ga0466959_0003743
316 Ga0466959_0004072
317 Ga0466959_0295065
318 Ga0466958_0006290
319 Ga0466958_0032769
320 Ga0466967_0007414
321 Ga0466967_0044824
322 Ga0495592_0009501
323 Ga0495603_0001963
324 Ga0495603_0013639
325 Ga0495603_0024221
326 Ga0495629_0000446
327 Ga0495629_0001434
328 Ga0495629_0008255
329 Ga0495651_0001517
330 Ga0495580_0015938
331 Ga0495605_0004582
332 Ga0495662_0000152
333 Ga0495594_0017754
334 Ga0495594_0033370
335 Ga0495594_0040960
336 Ga0495607_0100374
337 Ga0495583_0040115
338 Ga0495606_0005254
339 Ga0495620_0001845
340 Ga0495620_0010820
341 Ga0495628_0011926
342 Ga0495628_0156789
343 Ga0495631_0016304
344 Ga0495643_0008362
345 Ga0495666_0010614
346 Ga0495666_0014685
347 Ga0495652_0047373
348 Ga0495652_0136088
349 Ga0495665_0010708
350 Ga0495640_0008948
351 Ga0495640_0014301
352 Ga0495586_0005745
353 Ga0495587_0047396
354 Ga0495609_0074776
355 Ga0495645_0040888
356 Ga0495622_0006479
357 Ga0495622_0007895
358 Ga0495633_0010041
359 Ga0495634_0048553
360 Ga0495611_0014801
361 Ga0495625_0080907
362 Ga0495635_0026490
363 Ga0495657_0026548
364 Ga0495623_0011382
365 Ga0495623_0121314
366 Ga0495613_0002431
367 Ga0495613_0003772
368 Ga0495624_0086951
369 Ga0495670_0005373
370 Ga0495671_0154653
371 Ga0495600_0137176
372 Ga0495660_0029023
373 Ga0495604_0000138
374 Ga0495674_0356856
375 Ga0495676_0021290
376 Ga0495676_0029648
377 Ga0495676_0033685
378 Ga0495676_0099826
379 Ga0495687_029071
380 Ga0495687_032740
381 Ga0495675_0096997
382 Ga0495685_001213
383 Ga0495685_003934
384 Ga0495681_0007856
385 Ga0495593_0036515
386 Ga0495614_0008279
387 Ga0496101_0023419
388 Ga0496102_0114535
389 Ga0496106_0433280
390 Ga0496108_0133487
391 Ga0496109_0007532
392 Ga0496112_0051293
393 Ga0496114_0131383
394 Ga0495678_027619
395 Ga0501033_0001052
396 Ga0501034_0002524
397 Ga0501034_0067720
398 Ga0501036_0000952
399 Ga0501037_0082202
400 Ga0501038_0020024
401 Ga0501039_0002741
402 Ga0501042_0061911
403 Ga0501043_0000335
404 Ga0501047_0170330
405 Ga0501047_0225411
406 Ga0501048_0120842
407 Ga0501069_0079559
408 Ga0501070_0005270
409 Ga0501070_0092100
410 Ga0501074_0003369
411 Ga0501035_0003457
412 Ga0501044_0008291
413 Ga0501044_0044343
414 Ga0501044_0062223
415 Ga0501044_0085768
416 Ga0501045_0291271
417 Ga0495601_0000927
418 Ga0495601_0069897
419 Ga0500610_0156416
420 Ga0495619_0164472
421 Ga0500578_0024628
422 Ga0500560_002668
423 Ga0500569_007355
424 Ga0500652_001544
425 Ga0500658_0048577
426 Ga0500561_0019072
427 Ga0500579_048270
428 Ga0500600_0007109
429 Ga0500616_0003112
430 Ga0500633_0069577
431 Ga0500656_005586
432 Ga0466962_0002080
433 Ga0466962_0015729
434 8056836035
435 2554260828
436 2559429993
437 2585301964
438 2616901281
439 2643765022
440 2643900792
441 2643944232
442 2644404987
443 2644431078
444 2644461139
445 2811843301
446 2812354461
447 2812483530
448 2819696245
449 2852636081
450 2862184278
451 2862281872
452 2862512143
453 2862710657
454 2867370293
455 2873152701
456 2875395659
457 2912729033
458 2918508178
459 2946048977
460 2946071241
461 2947225502
462 2966599590
463 2990047084
464 2990090079
465 3006396632
466 3006488946
467 8008489199
468 8008575938
469 8025527650
470 8047713501

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00356

LacI

Bacterial regulatory proteins, lacI family

5

50

0.98

PF13407

Peripla_BP_4

Periplasmic binding protein domain

77

334

0.85

PF00532

Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

61

343

0.84

PF13377

Peripla_BP_3

Periplasmic binding protein-like domain

189

347

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
3k4h-assembly1.cif.gz_A crystal structure of putative transcriptional regulator laci from bacillus cereus subsp. cytotoxis nvh 391-98 0.9457 70 342
2kei-assembly1.cif.gz_A refined solution structure of a dimer of lac repressor dna-binding domain complexed to its natural operator o1 0.9281 12 57
3c3k-assembly1.cif.gz_A crystal structure of an uncharacterized protein from actinobacillus succinogenes 0.9264 68 341
2o20-assembly1.cif.gz_A crystal structure of transcription regulator ccpa of lactococcus lactis 0.9239 70 342
1sxg-assembly3.cif.gz_F structural studies on the apo transcription factor form b. megaterium 0.9228 70 342
ID Description Score Start End Superfamily
2jcgA03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.972 172 300 3.40.50.2300
3kkeB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9705 174 300 3.40.50.2300
2jcgA01 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9507 12 57 1.10.260.40
2rgyA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9463 172 300 3.40.50.2300
3k4hB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9455 177 300 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A0F0G9R0-F1-model_v4 LacI family transcriptional regulator 0.9863 184 304 GO:0000976
GO:0003700
AF-A0A7C3S133-F1-model_v4 LacI family transcriptional regulator 0.9668 182 342 GO:0000976
GO:0003700
AF-A0A0M8Z4Z9-F1-model_v4 LacI family transcriptional regulator 0.9652 171 324 GO:0000976
GO:0003700
AF-A0A4Q6DTD8-F1-model_v4 deleted 0.9598 188 342
AF-A0A519H1W0-F1-model_v4 LacI family transcriptional regulator 0.958 182 342 GO:0000976
GO:0003700

Map