|
Taxon Oid |
3300009988
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions |
| Genome Name Sample Name |
Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_233 metaG |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300009988 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.11.4 |
| Img Submission Id |
91483 |
|
Gold Analysis Project Id
|
Ga0105035
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0127582
|
|
Gold Study Id
|
Gs0114297
|
| Add Date |
07/07/2016 00:00:00 |
| Assembly Method |
MEGAHIT v. 1.0.3 |
| Has Coverage |
True |
| Public Release Date |
07/07/2017 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Tijana Glavina del Rio |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected]; [email protected] |
| Alt2 Contact Names |
Esther Singer; Tanja Woyke; Thomas E. Juenger |
| Contact Email |
[email protected], [email protected]; [email protected] |
| Contact Name |
Esther Singer, Esther Singer; Tanja Woyke |
| Award Doi |
10.46936/10.25585/60000922 |
| Funding Program |
Director's Science |
| Funding Year |
2013 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA444457 |
| Ncbi Biosample Accession |
SAMN08779670 |
| Sequencing Method |
Illumina HiSeq 2500-1TB |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Elevation In Meters |
157.000000 |
| Geographic Location |
USA: Austin, Texas |
| Habitat |
Switchgrass rhizosphere |
| Isolation |
Switchgrass |
| Isolation Country |
8855 |
| Latitude |
30.387 |
| Longitude |
-97.7301 |
| Sample Collection Date |
2014/11/4 |
| Host Name |
Panicum virgatum |
| Genome Size Assembled |
40344473 |
| Gene Count Assembled |
88077 |