F348271

General Info

Members Datasets Scaffolds Average Seq Length
235 158 226 296

Family's Representative Sequence

Representative Sequence 3300031548|Ga0307408_100004677|Ga0307408_1000046772
Length 348
Sequence MTRLRPNSMSPLTSFAKSGPPASRRTPRRTSGGSHQTERARNQTRAIRLRCVRGIILAGGSGTRLHPVTLGVSKQLVPVYDKPMIYYPLSTLIFAGIRDVLVITTPHDASAFERLLGDGSQFGISIHYAVQPSPDGLAQAFVIGADFIGLEKVALVLGDNIFYGPGLGTQLGRFSDVDGGAVFAYWVAEPQAYGVVEFDVDGRAISLEEKPARPRSNYAVPGLYFYDNDVIGIASQLQPSARGEYEITDVNRHYLEAGRLQVGVLPRGTAWLDTGTFESMNDASNFVRTIEARQGLKVGAPEEAAWRQGFLSDEELEQRAHALLKSGYGTYLADILQRRRQSAVSLAG

Samples

Sample ID Description Type Environment
1 2738541274 Mycobacterium sp. YR708 Isolate Unclassified
2 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
3 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
4 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
5 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
6 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
7 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
8 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
9 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
12 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
13 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
14 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
15 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
16 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
17 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
18 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
19 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
20 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
21 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
22 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
23 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
24 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
25 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
26 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
27 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
28 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
29 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
30 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
31 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
36 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
37 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
38 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
39 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
40 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
41 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
42 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
43 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
44 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
45 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
46 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
47 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
48 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
49 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
50 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
51 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
52 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
53 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
54 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
55 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
56 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
57 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
58 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
59 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
60 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
61 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
62 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
63 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
64 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
65 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
66 3300012495 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.old.040610 Metagenome Rhizosphere
67 3300012510 Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.9.old.080610 Metagenome Rhizosphere
68 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
69 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
70 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
71 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
72 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
73 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
74 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
75 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
101 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
104 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
105 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
106 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
107 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
108 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
109 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
110 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
111 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
112 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
113 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
114 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
115 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
116 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
117 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
118 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
119 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
120 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
121 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
122 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
123 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
124 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
125 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
126 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
127 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
128 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
129 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
130 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
131 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
132 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
133 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
134 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
135 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
136 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
137 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
138 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
139 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
140 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
141 3300049768 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_B_4_drought Metagenome Rhizosphere
142 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
143 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
144 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
145 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
146 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
147 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
148 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
149 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
150 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
151 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
152 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
153 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
154 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
155 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
156 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
157 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
158 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.17
Metatranscriptomes 0
Isolates 3.83

Biome Distribution

Category Percentage (%)
Aerial Root 0.85
Bulb 0
Endosphere 11.91
Nodule 0
Rhizoplane 0
Rhizosphere 83.83
Stem 0
Stem Tuber 0
Unclassified 3.4

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10170001 3300003323 Bacteria 2118
2 Ga0070658_10024048 3300005327 Bacteria 4889
3 Ga0070658_10121172 3300005327 Bacteria 2173
4 Ga0070676_10327301 3300005328 Bacteria 1047
5 Ga0070690_100002458 3300005330 Bacteria 9960
6 Ga0070670_100024591 3300005331 Bacteria 5179
7 Ga0068869_100001174 3300005334 Bacteria 15365
8 Ga0070666_10071063 3300005335 Bacteria 2368
9 Ga0070680_100083202 3300005336 Bacteria 2642
10 Ga0070668_100028226 3300005347 Bacteria 4261
11 Ga0070675_100062125 3300005354 Bacteria 3086
12 Ga0070674_100361506 3300005356 Bacteria 1175
13 Ga0070659_100049406 3300005366 Bacteria 3307
14 Ga0070714_100110438 3300005435 Bacteria 2434
15 Ga0070700_100026065 3300005441 Bacteria 3448
16 Ga0070700_100036965 3300005441 Bacteria 2966
17 Ga0070662_100333230 3300005457 Bacteria 1240
18 Ga0068867_100000301 3300005459 Bacteria 32487
19 Ga0068867_100003279 3300005459 Bacteria 11404
20 Ga0068853_100085315 3300005539 Bacteria 2768
21 Ga0068855_100010402 3300005563 Bacteria 11223
22 Ga0068852_100045858 3300005616 Bacteria 3721
23 Ga0068859_100182143 3300005617 Bacteria 2184
24 Ga0068866_10027308 3300005718 Bacteria 2705
25 Ga0068870_10115735 3300005840 Bacteria 1537
26 Ga0068863_100459752 3300005841 Bacteria 1250
27 Ga0068858_100000048 3300005842 Bacteria 126360
28 Ga0068860_100030440 3300005843 Bacteria 5192
29 Ga0068860_100144524 3300005843 Bacteria 2288
30 Ga0068862_100046266 3300005844 Bacteria 3713
31 Ga0068862_100150709 3300005844 Bacteria 2070
32 Ga0081455_10004976 3300005937 Bacteria 14699
33 Ga0075365_10003981 3300006038 Bacteria 7739
34 Ga0075365_10105985 3300006038 Bacteria 1928
35 Ga0075365_10160635 3300006038 Bacteria 1565
36 Ga0075368_10031299 3300006042 Bacteria 2063
37 Ga0075363_100052953 3300006048 Bacteria 2167
38 Ga0075363_100081954 3300006048 Bacteria 1765
39 Ga0075364_10005222 3300006051 Bacteria 7539
40 Ga0075364_10073925 3300006051 Bacteria 2247
41 Ga0075364_10137474 3300006051 Bacteria 1642
42 Ga0075432_10000140 3300006058 Bacteria 16909
43 Ga0075432_10009097 3300006058 Bacteria 3384
44 Ga0075362_10014446 3300006177 Bacteria 3188
45 Ga0075362_10134341 3300006177 Bacteria 1179
46 Ga0075367_10047716 3300006178 Bacteria 2520
47 Ga0075367_10118572 3300006178 Bacteria 1629
48 Ga0075369_10088523 3300006186 Bacteria 1380
49 Ga0097621_100011855 3300006237 Bacteria 6443
50 Ga0097621_100521170 3300006237 Bacteria 1079
51 Ga0068871_100022864 3300006358 Bacteria 4826
52 Ga0075428_100000711 3300006844 Bacteria 34391
53 Ga0075428_100205232 3300006844 Bacteria 2130
54 Ga0075428_100476293 3300006844 Bacteria 1336
55 Ga0075431_100004840 3300006847 Bacteria 13257
56 Ga0075433_10000003 3300006852 Bacteria 85999
57 Ga0075433_10002175 3300006852 Bacteria 14856
58 Ga0075434_100001046 3300006871 Bacteria 22564
59 Ga0075434_100023919 3300006871 Bacteria 5963
60 Ga0075429_100056370 3300006880 Bacteria 3420
61 Ga0068865_100001675 3300006881 Bacteria 12976
62 Ga0068865_100017042 3300006881 Bacteria 4663
63 Ga0068865_100042152 3300006881 Bacteria 3111
64 Ga0075436_100000498 3300006914 Bacteria 25418
65 Ga0097620_100182146 3300006931 Bacteria 2184
66 Ga0075435_100000333 3300007076 Bacteria 29085
67 Ga0075435_100003509 3300007076 Bacteria 10647
68 Ga0111539_10001429 3300009094 Bacteria 31852
69 Ga0111539_10002214 3300009094 Bacteria 25972
70 Ga0105245_10023612 3300009098 Bacteria 5399
71 Ga0105245_10097321 3300009098 Bacteria 2717
72 Ga0114129_10000805 3300009147 Bacteria 40272
73 Ga0105243_10032630 3300009148 Bacteria 4025
74 Ga0105243_10133488 3300009148 Bacteria 2109
75 Ga0105243_10793691 3300009148 Bacteria 932
76 Ga0105242_10018818 3300009176 Bacteria 5406
77 Ga0105237_10237795 3300009545 Bacteria 1823
78 Ga0105238_10102166 3300009551 Bacteria 2849
79 Ga0105249_10076932 3300009553 Bacteria 3094
80 Ga0105028_104836 3300009993 Bacteria 1405
81 Ga0105239_10044460 3300010375 Bacteria 4868
82 Ga0105239_10082290 3300010375 Bacteria 3544
83 Ga0105239_10313954 3300010375 Bacteria 1767
84 Ga0157323_1000980 3300012495 Bacteria 1340
85 Ga0157316_1001593 3300012510 Bacteria 1434
86 Ga0157378_10064603 3300013297 Bacteria 3274
87 Ga0157378_10072651 3300013297 Bacteria 3091
88 Ga0157372_10248247 3300013307 Bacteria 2066
89 Ga0157379_10517528 3300014968 Bacteria 1107
90 Ga0182005_1000124 3300015265 Bacteria 54958
91 Ga0163161_10010786 3300017792 Bacteria 6332
92 Ga0163161_10065655 3300017792 Bacteria 2648
93 Ga0209436_106648 3300025208 Bacteria 2509
94 Ga0207426_1002733 3300025302 Bacteria 10706
95 Ga0207642_10029256 3300025899 Bacteria 2279
96 Ga0207642_10125346 3300025899 Bacteria 1332
97 Ga0207688_10009385 3300025901 Bacteria 5328
98 Ga0207643_10136156 3300025908 Bacteria 1464
99 Ga0207705_10002789 3300025909 Bacteria 13361
100 Ga0207705_10030663 3300025909 Bacteria 3837
101 Ga0207650_10006027 3300025925 Bacteria 8271
102 Ga0207659_10203536 3300025926 Bacteria 1582
103 Ga0207687_10047141 3300025927 Bacteria 2986
104 Ga0207664_10109210 3300025929 Bacteria 2298
105 Ga0207690_10029491 3300025932 Bacteria 3490
106 Ga0207690_10149010 3300025932 Bacteria 1733
107 Ga0207706_10004999 3300025933 Bacteria 12385
108 Ga0207686_10026671 3300025934 Bacteria 3374
109 Ga0207709_10004862 3300025935 Bacteria 7686
110 Ga0207704_10002651 3300025938 Bacteria 8079
111 Ga0207689_10000039 3300025942 Bacteria 93515
112 Ga0207689_10034052 3300025942 Bacteria 4230
113 Ga0207667_10096177 3300025949 Bacteria 3056
114 Ga0207712_10112985 3300025961 Bacteria 2041
115 Ga0207668_10024073 3300025972 Bacteria 3925
116 Ga0207668_10024433 3300025972 Bacteria 3900
117 Ga0207640_10282341 3300025981 Bacteria 1305
118 Ga0207703_10000064 3300026035 Bacteria 126619
119 Ga0207708_10061871 3300026075 Bacteria 2859
120 Ga0207641_10174657 3300026088 Bacteria 1964
121 Ga0207648_10002400 3300026089 Bacteria 20173
122 Ga0207648_10002565 3300026089 Bacteria 19471
123 Ga0207674_10027482 3300026116 Bacteria 6017
124 Ga0207675_100001708 3300026118 Bacteria 22005
125 Ga0207683_10229234 3300026121 Bacteria 1694
126 Ga0207428_10004740 3300027907 Bacteria 12863
127 Ga0207428_10009107 3300027907 Bacteria 8923
128 Ga0207428_10017071 3300027907 Bacteria 6236
129 Ga0268265_10082890 3300028380 Bacteria 2537
130 Ga0268264_10020201 3300028381 Bacteria 5444
131 Ga0265327_10000063 3300031251 Bacteria 232763
132 Ga0265327_10001497 3300031251 Bacteria 28976
133 Ga0307408_100000011 3300031548 Bacteria 414737
134 Ga0307408_100004677 3300031548 Bacteria 9245
135 Ga0307408_100029206 3300031548 Bacteria 3817
136 Ga0307408_100090356 3300031548 Bacteria 2311
137 Ga0307408_100176003 3300031548 Bacteria 1712
138 Ga0307408_100194781 3300031548 Bacteria 1636
139 Ga0307408_100336139 3300031548 Bacteria 1277
140 Ga0265314_10043784 3300031711 Bacteria 3178
141 Ga0316576_10060998 3300031727 Bacteria 2764
142 Ga0307405_10001207 3300031731 Bacteria 10724
143 Ga0307413_10005495 3300031824 Bacteria 5663
144 Ga0307413_10256158 3300031824 Bacteria 1301
145 Ga0307410_10001716 3300031852 Bacteria 10111
146 Ga0307410_10006728 3300031852 Bacteria 6231
147 Ga0307410_10063312 3300031852 Bacteria 2536
148 Ga0307410_10331893 3300031852 Bacteria 1210
149 Ga0307410_10372418 3300031852 Bacteria 1147
150 Ga0307406_10000718 3300031901 Bacteria 18684
151 Ga0307406_10023358 3300031901 Bacteria 3677
152 Ga0307406_10037769 3300031901 Bacteria 2985
153 Ga0307407_10000774 3300031903 Bacteria 10539
154 Ga0307412_10005719 3300031911 Bacteria 6990
155 Ga0307412_10009983 3300031911 Bacteria 5461
156 Ga0307412_10056731 3300031911 Bacteria 2612
157 Ga0307409_100000040 3300031995 Bacteria 44978
158 Ga0307409_100004823 3300031995 Bacteria 7656
159 Ga0307416_100000035 3300032002 Bacteria 144188
160 Ga0307416_100000078 3300032002 Bacteria 71548
161 Ga0307416_100160617 3300032002 Bacteria 2076
162 Ga0307416_100272727 3300032002 Bacteria 1662
163 Ga0307414_10000285 3300032004 Bacteria 29693
164 Ga0307414_10096454 3300032004 Bacteria 2213
165 Ga0307414_10105175 3300032004 Bacteria 2133
166 Ga0307411_10007839 3300032005 Bacteria 5481
167 Ga0307411_10090940 3300032005 Bacteria 2130
168 Ga0307411_10129358 3300032005 Bacteria 1843
169 Ga0307411_10149533 3300032005 Bacteria 1733
170 Ga0307415_100028126 3300032126 Bacteria 3572
171 Ga0307415_100190825 3300032126 Bacteria 1617
172 Ga0316574_0061873 3300035398 Bacteria 2352
173 Ga0373931_0167567 3300035691 Bacteria 1292
174 Ga0316584_0086534 3300036712 Bacteria 2346
175 Ga0395905_0000026 3300037471 Bacteria 315051
176 Ga0436364_0633294 3300037853 Bacteria 5936
177 Ga0439448_0014700 3300042005 Bacteria 2363
178 Ga0439432_050520 3300042006 Bacteria 1298
179 Ga0439434_0030404 3300042435 Bacteria 1639
180 Ga0439435_0008182 3300042436 Bacteria 2420
181 Ga0451577_0000035 3300042876 Bacteria 373467
182 Ga0453683_0000002 3300044673 Bacteria 1244396
183 Ga0453683_0000622 3300044673 Bacteria 38622
184 Ga0453683_0000926 3300044673 Bacteria 27966
185 Ga0453684_0000097 3300044712 Bacteria 377772
186 Ga0453684_0108013 3300044712 Bacteria 3387
187 Ga0466959_0013683 3300045049 Bacteria 5888
188 Ga0451576_0025963 3300045051 Bacteria 6305
189 Ga0451576_0038620 3300045051 Bacteria 5053
190 Ga0495642_0104013 3300046528 Bacteria 1211
191 Ga0495611_0079897 3300046648 Bacteria 1503
192 Ga0495672_0014184 3300047320 Bacteria 5467
193 Ga0496121_0000008 3300048924 Bacteria 843593
194 Ga0501033_0284898 3300049570 Bacteria 1166
195 Ga0501069_0023548 3300049585 Bacteria 3359
196 Ga0501223_008459 3300049663 Bacteria 2099
197 Ga0501227_000198 3300049665 Bacteria 12037
198 Ga0501259_010524 3300049688 Bacteria 1512
199 Ga0501271_006952 3300049768 Bacteria 1132
200 Ga0501044_0270474 3300049823 Bacteria 1635
201 nmdc:mga03683_8002_c1 3300050489 Bacteria 3697
202 nmdc:mga00v17_1938_c1 3300050491 Bacteria 10695
203 nmdc:mga00v17_8959_c1 3300050491 Bacteria 5399
204 nmdc:mga0yw44_111164_c1 3300050492 Bacteria 1756
205 nmdc:mga0yw44_136260_c1 3300050492 Bacteria 1106
206 nmdc:mga0yw44_7851_c1 3300050492 Bacteria 5282
207 nmdc:mga0yw44_87588_c1 3300050492 Bacteria 1963
208 nmdc:mga05p37_16809_c1 3300050507 Bacteria 8821
209 nmdc:mga09592_48526_c1 3300050508 Bacteria 3579
210 nmdc:mga06r32_7714_c1 3300050510 Bacteria 9680
211 nmdc:mga08y16_183066_c1 3300050511 Bacteria 2175
212 nmdc:mga08y16_55715_c1 3300050511 Bacteria 4131
213 nmdc:mga08y16_71526_c1 3300050511 Bacteria 3615
214 nmdc:mga0n895_1054_c1 3300050512 Bacteria 20094
215 nmdc:mga0n895_14501_c1 3300050512 Bacteria 7161
216 nmdc:mga0rr50_2025_c1 3300050513 Bacteria 11292
217 nmdc:mga0rr50_30516_c1 3300050513 Bacteria 3818
218 nmdc:mga08x19_5913_c1 3300050514 Bacteria 7235
219 nmdc:mga08x19_80696_c1 3300050514 Bacteria 2135
220 nmdc:mga0a205_1500_c1 3300050515 Bacteria 19905
221 nmdc:mga0a205_322_c1 3300050515 Bacteria 35818
222 nmdc:mga0sz30_47896_c2 3300050516 Bacteria 1276
223 Ga0500593_000147 3300053117 Bacteria 28060
224 Ga0500652_000274 3300053131 Bacteria 19163
225 Ga0500573_0000001 3300053140 Bacteria 436394
226 Ga0500645_000070 3300053730 Bacteria 79917

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300026089 Ga0207648_10002565 Ga0207648_100025656 261
2 3300025901 Ga0207688_10009385 Ga0207688_100093852 281
3 3300042005 Ga0439448_0014700 Ga0439448_0014700_928_1806 281
4 iso_pu_bacteria 2818991442 2819576671 282
5 iso_pu_bacteria 2821136567 2821143102 282
6 iso_pu_bacteria 2837268691 2837269312 282
7 iso_pu_bacteria 2884791551 2884797346 282
8 iso_pu_bacteria 2904467357 2904470822 282
9 iso_pu_bacteria 2984576629 2984577517 282
10 iso_pu_bacteria 2990256926 2990259678 282
11 3300005327 Ga0070658_10024048 Ga0070658_100240482 284
12 3300005327 Ga0070658_10121172 Ga0070658_101211723 284
13 3300005335 Ga0070666_10071063 Ga0070666_100710632 284
14 3300005563 Ga0068855_100010402 Ga0068855_1000104029 284
15 3300005841 Ga0068863_100459752 Ga0068863_1004597521 284
16 3300013297 Ga0157378_10064603 Ga0157378_100646032 284
17 3300025909 Ga0207705_10002789 Ga0207705_100027899 284
18 3300025909 Ga0207705_10030663 Ga0207705_100306633 284
19 3300025949 Ga0207667_10096177 Ga0207667_100961771 284
20 3300031548 Ga0307408_100029206 Ga0307408_1000292063 284
21 3300031548 Ga0307408_100090356 Ga0307408_1000903563 284
22 3300042876 Ga0451577_0000035 Ga0451577_0000035_72439_73338 284
23 3300044673 Ga0453683_0000002 Ga0453683_0000002_465817_466719 284
24 3300044673 Ga0453683_0000622 Ga0453683_0000622_30234_31136 284
25 3300044712 Ga0453684_0000097 Ga0453684_0000097_72446_73345 284
26 3300049663 Ga0501223_008459 Ga0501223_008459_699_1610 284
27 3300049665 Ga0501227_000198 Ga0501227_000198_3829_4740 284
28 3300049688 Ga0501259_010524 Ga0501259_010524_125_1036 284
29 iso_pu_bacteria 2935409751 2935412289 284
30 3300005330 Ga0070690_100002458 Ga0070690_1000024584 285
31 3300006237 Ga0097621_100521170 Ga0097621_1005211701 285
32 3300026121 Ga0207683_10229234 Ga0207683_102292342 285
33 3300045051 Ga0451576_0038620 Ga0451576_0038620_102_977 285
34 iso_pu_bacteria 2738541274 2738704679 285
35 3300003323 rootH1_10170001 rootH1_101700012 286
36 3300005328 Ga0070676_10327301 Ga0070676_103273012 286
37 3300005331 Ga0070670_100024591 Ga0070670_1000245916 286
38 3300005334 Ga0068869_100001174 Ga0068869_10000117413 286
39 3300005336 Ga0070680_100083202 Ga0070680_1000832021 286
40 3300005347 Ga0070668_100028226 Ga0070668_1000282264 286
41 3300005354 Ga0070675_100062125 Ga0070675_1000621252 286
42 3300005356 Ga0070674_100361506 Ga0070674_1003615062 286
43 3300005366 Ga0070659_100049406 Ga0070659_1000494062 286
44 3300005435 Ga0070714_100110438 Ga0070714_1001104382 286
45 3300005441 Ga0070700_100026065 Ga0070700_1000260653 286
46 3300005441 Ga0070700_100036965 Ga0070700_1000369653 286
47 3300005457 Ga0070662_100333230 Ga0070662_1003332301 286
48 3300005459 Ga0068867_100000301 Ga0068867_10000030126 286
49 3300005459 Ga0068867_100003279 Ga0068867_1000032798 286
50 3300005539 Ga0068853_100085315 Ga0068853_1000853152 286
51 3300005616 Ga0068852_100045858 Ga0068852_1000458582 286
52 3300005617 Ga0068859_100182143 Ga0068859_1001821432 286
53 3300005718 Ga0068866_10027308 Ga0068866_100273083 286
54 3300005840 Ga0068870_10115735 Ga0068870_101157352 286
55 3300005842 Ga0068858_100000048 Ga0068858_10000004891 286
56 3300005843 Ga0068860_100030440 Ga0068860_1000304409 286
57 3300005843 Ga0068860_100144524 Ga0068860_1001445242 286
58 3300005844 Ga0068862_100046266 Ga0068862_1000462662 286
59 3300005844 Ga0068862_100150709 Ga0068862_1001507092 286
60 3300005937 Ga0081455_10004976 Ga0081455_1000497615 286
61 3300006038 Ga0075365_10003981 Ga0075365_100039812 286
62 3300006038 Ga0075365_10105985 Ga0075365_101059852 286
63 3300006038 Ga0075365_10160635 Ga0075365_101606351 286
64 3300006042 Ga0075368_10031299 Ga0075368_100312992 286
65 3300006048 Ga0075363_100052953 Ga0075363_1000529533 286
66 3300006048 Ga0075363_100081954 Ga0075363_1000819542 286
67 3300006051 Ga0075364_10005222 Ga0075364_100052224 286
68 3300006051 Ga0075364_10073925 Ga0075364_100739252 286
69 3300006051 Ga0075364_10137474 Ga0075364_101374742 286
70 3300006058 Ga0075432_10000140 Ga0075432_100001404 286
71 3300006058 Ga0075432_10009097 Ga0075432_100090973 286
72 3300006177 Ga0075362_10014446 Ga0075362_100144462 286
73 3300006177 Ga0075362_10134341 Ga0075362_101343411 286
74 3300006178 Ga0075367_10047716 Ga0075367_100477163 286
75 3300006178 Ga0075367_10118572 Ga0075367_101185723 286
76 3300006186 Ga0075369_10088523 Ga0075369_100885232 286
77 3300006237 Ga0097621_100011855 Ga0097621_1000118553 286
78 3300006358 Ga0068871_100022864 Ga0068871_1000228644 286
79 3300006844 Ga0075428_100000711 Ga0075428_10000071117 286
80 3300006844 Ga0075428_100205232 Ga0075428_1002052322 286
81 3300006844 Ga0075428_100476293 Ga0075428_1004762932 286
82 3300006847 Ga0075431_100004840 Ga0075431_10000484010 286
83 3300006852 Ga0075433_10000003 Ga0075433_1000000358 286
84 3300006852 Ga0075433_10002175 Ga0075433_100021759 286
85 3300006871 Ga0075434_100001046 Ga0075434_1000010468 286
86 3300006871 Ga0075434_100023919 Ga0075434_1000239192 286
87 3300006880 Ga0075429_100056370 Ga0075429_1000563701 286
88 3300006881 Ga0068865_100001675 Ga0068865_10000167511 286
89 3300006881 Ga0068865_100017042 Ga0068865_1000170422 286
90 3300006881 Ga0068865_100042152 Ga0068865_1000421522 286
91 3300006914 Ga0075436_100000498 Ga0075436_10000049813 286
92 3300006931 Ga0097620_100182146 Ga0097620_1001821462 286
93 3300007076 Ga0075435_100000333 Ga0075435_10000033320 286
94 3300007076 Ga0075435_100003509 Ga0075435_10000350910 286
95 3300009094 Ga0111539_10001429 Ga0111539_1000142920 286
96 3300009094 Ga0111539_10002214 Ga0111539_1000221417 286
97 3300009098 Ga0105245_10023612 Ga0105245_100236123 286
98 3300009098 Ga0105245_10097321 Ga0105245_100973213 286
99 3300009147 Ga0114129_10000805 Ga0114129_100008054 286
100 3300009148 Ga0105243_10032630 Ga0105243_100326303 286
101 3300009148 Ga0105243_10133488 Ga0105243_101334882 286
102 3300009148 Ga0105243_10793691 Ga0105243_107936911 286
103 3300009176 Ga0105242_10018818 Ga0105242_100188184 286
104 3300009545 Ga0105237_10237795 Ga0105237_102377952 286
105 3300009551 Ga0105238_10102166 Ga0105238_101021662 286
106 3300009553 Ga0105249_10076932 Ga0105249_100769323 286
107 3300009993 Ga0105028_104836 Ga0105028_1048362 286
108 3300010375 Ga0105239_10044460 Ga0105239_100444603 286
109 3300010375 Ga0105239_10082290 Ga0105239_100822903 286
110 3300010375 Ga0105239_10313954 Ga0105239_103139541 286
111 3300012495 Ga0157323_1000980 Ga0157323_10009801 286
112 3300012510 Ga0157316_1001593 Ga0157316_10015932 286
113 3300013297 Ga0157378_10072651 Ga0157378_100726512 286
114 3300013307 Ga0157372_10248247 Ga0157372_102482472 286
115 3300014968 Ga0157379_10517528 Ga0157379_105175281 286
116 3300015265 Ga0182005_1000124 Ga0182005_100012432 286
117 3300017792 Ga0163161_10010786 Ga0163161_100107865 286
118 3300017792 Ga0163161_10065655 Ga0163161_100656552 286
119 3300025208 Ga0209436_106648 Ga0209436_1066481 286
120 3300025302 Ga0207426_1002733 Ga0207426_10027337 286
121 3300025899 Ga0207642_10029256 Ga0207642_100292562 286
122 3300025899 Ga0207642_10125346 Ga0207642_101253461 286
123 3300025908 Ga0207643_10136156 Ga0207643_101361561 286
124 3300025925 Ga0207650_10006027 Ga0207650_100060278 286
125 3300025926 Ga0207659_10203536 Ga0207659_102035362 286
126 3300025927 Ga0207687_10047141 Ga0207687_100471412 286
127 3300025929 Ga0207664_10109210 Ga0207664_101092103 286
128 3300025932 Ga0207690_10029491 Ga0207690_100294913 286
129 3300025932 Ga0207690_10149010 Ga0207690_101490102 286
130 3300025933 Ga0207706_10004999 Ga0207706_100049994 286
131 3300025934 Ga0207686_10026671 Ga0207686_100266713 286
132 3300025935 Ga0207709_10004862 Ga0207709_100048624 286
133 3300025938 Ga0207704_10002651 Ga0207704_100026514 286
134 3300025942 Ga0207689_10000039 Ga0207689_1000003953 286
135 3300025942 Ga0207689_10034052 Ga0207689_100340522 286
136 3300025961 Ga0207712_10112985 Ga0207712_101129852 286
137 3300025972 Ga0207668_10024073 Ga0207668_100240734 286
138 3300025972 Ga0207668_10024433 Ga0207668_100244333 286
139 3300025981 Ga0207640_10282341 Ga0207640_102823412 286
140 3300026035 Ga0207703_10000064 Ga0207703_1000006490 286
141 3300026075 Ga0207708_10061871 Ga0207708_100618713 286
142 3300026088 Ga0207641_10174657 Ga0207641_101746572 286
143 3300026089 Ga0207648_10002400 Ga0207648_100024008 286
144 3300026116 Ga0207674_10027482 Ga0207674_100274822 286
145 3300026118 Ga0207675_100001708 Ga0207675_10000170812 286
146 3300027907 Ga0207428_10004740 Ga0207428_100047407 286
147 3300027907 Ga0207428_10009107 Ga0207428_100091075 286
148 3300027907 Ga0207428_10017071 Ga0207428_100170716 286
149 3300028380 Ga0268265_10082890 Ga0268265_100828901 286
150 3300028381 Ga0268264_10020201 Ga0268264_100202014 286
151 3300031251 Ga0265327_10000063 Ga0265327_1000006395 286
152 3300031251 Ga0265327_10001497 Ga0265327_100014972 286
153 3300031548 Ga0307408_100000011 Ga0307408_10000001157 286
154 3300031548 Ga0307408_100004677 Ga0307408_1000046772 286
155 3300031548 Ga0307408_100176003 Ga0307408_1001760032 286
156 3300031548 Ga0307408_100194781 Ga0307408_1001947812 286
157 3300031548 Ga0307408_100336139 Ga0307408_1003361391 286
158 3300031711 Ga0265314_10043784 Ga0265314_100437842 286
159 3300031727 Ga0316576_10060998 Ga0316576_100609982 286
160 3300031731 Ga0307405_10001207 Ga0307405_100012074 286
161 3300031824 Ga0307413_10005495 Ga0307413_100054953 286
162 3300031824 Ga0307413_10256158 Ga0307413_102561582 286
163 3300031852 Ga0307410_10001716 Ga0307410_100017167 286
164 3300031852 Ga0307410_10006728 Ga0307410_100067285 286
165 3300031852 Ga0307410_10063312 Ga0307410_100633122 286
166 3300031852 Ga0307410_10331893 Ga0307410_103318932 286
167 3300031852 Ga0307410_10372418 Ga0307410_103724182 286
168 3300031901 Ga0307406_10000718 Ga0307406_1000071818 286
169 3300031901 Ga0307406_10023358 Ga0307406_100233582 286
170 3300031901 Ga0307406_10037769 Ga0307406_100377692 286
171 3300031903 Ga0307407_10000774 Ga0307407_100007745 286
172 3300031911 Ga0307412_10005719 Ga0307412_100057193 286
173 3300031911 Ga0307412_10009983 Ga0307412_100099835 286
174 3300031911 Ga0307412_10056731 Ga0307412_100567312 286
175 3300031995 Ga0307409_100000040 Ga0307409_10000004028 286
176 3300031995 Ga0307409_100004823 Ga0307409_1000048232 286
177 3300032002 Ga0307416_100000035 Ga0307416_10000003544 286
178 3300032002 Ga0307416_100000078 Ga0307416_10000007842 286
179 3300032002 Ga0307416_100160617 Ga0307416_1001606172 286
180 3300032002 Ga0307416_100272727 Ga0307416_1002727272 286
181 3300032004 Ga0307414_10000285 Ga0307414_1000028519 286
182 3300032004 Ga0307414_10096454 Ga0307414_100964543 286
183 3300032004 Ga0307414_10105175 Ga0307414_101051752 286
184 3300032005 Ga0307411_10007839 Ga0307411_100078392 286
185 3300032005 Ga0307411_10090940 Ga0307411_100909402 286
186 3300032005 Ga0307411_10129358 Ga0307411_101293582 286
187 3300032005 Ga0307411_10149533 Ga0307411_101495332 286
188 3300032126 Ga0307415_100028126 Ga0307415_1000281262 286
189 3300032126 Ga0307415_100190825 Ga0307415_1001908252 286
190 3300035398 Ga0316574_0061873 Ga0316574_0061873_166_1026 286
191 3300035691 Ga0373931_0167567 Ga0373931_0167567_368_1261 286
192 3300036712 Ga0316584_0086534 Ga0316584_0086534_1420_2280 286
193 3300037471 Ga0395905_0000026 Ga0395905_0000026_65812_66690 286
194 3300037853 Ga0436364_0633294 Ga0436364_0633294_4708_5589 286
195 3300042006 Ga0439432_050520 Ga0439432_050520_164_1033 286
196 3300042435 Ga0439434_0030404 Ga0439434_0030404_291_1160 286
197 3300042436 Ga0439435_0008182 Ga0439435_0008182_1105_1998 286
198 3300044673 Ga0453683_0000926 Ga0453683_0000926_15462_16382 286
199 3300044712 Ga0453684_0108013 Ga0453684_0108013_405_1319 286
200 3300045049 Ga0466959_0013683 Ga0466959_0013683_956_1828 286
201 3300045051 Ga0451576_0025963 Ga0451576_0025963_2319_3296 286
202 3300046528 Ga0495642_0104013 Ga0495642_0104013_186_1073 286
203 3300046648 Ga0495611_0079897 Ga0495611_0079897_299_1159 286
204 3300047320 Ga0495672_0014184 Ga0495672_0014184_439_1299 286
205 3300048924 Ga0496121_0000008 Ga0496121_0000008_208357_209220 286
206 3300049570 Ga0501033_0284898 Ga0501033_0284898_223_1095 286
207 3300049585 Ga0501069_0023548 Ga0501069_0023548_1126_1986 286
208 3300049768 Ga0501271_006952 Ga0501271_006952_90_983 286
209 3300049823 Ga0501044_0270474 Ga0501044_0270474_352_1218 286
210 3300050489 nmdc:mga03683_8002_c1 nmdc:mga03683_8002_c1_2244_3125 286
211 3300050491 nmdc:mga00v17_1938_c1 nmdc:mga00v17_1938_c1_3329_4210 286
212 3300050491 nmdc:mga00v17_8959_c1 nmdc:mga00v17_8959_c1_1123_2004 286
213 3300050492 nmdc:mga0yw44_111164_c1 nmdc:mga0yw44_111164_c1_224_1105 286
214 3300050492 nmdc:mga0yw44_136260_c1 nmdc:mga0yw44_136260_c1_40_921 286
215 3300050492 nmdc:mga0yw44_7851_c1 nmdc:mga0yw44_7851_c1_122_1003 286
216 3300050492 nmdc:mga0yw44_87588_c1 nmdc:mga0yw44_87588_c1_614_1495 286
217 3300050507 nmdc:mga05p37_16809_c1 nmdc:mga05p37_16809_c1_4090_4983 286
218 3300050508 nmdc:mga09592_48526_c1 nmdc:mga09592_48526_c1_2504_3397 286
219 3300050510 nmdc:mga06r32_7714_c1 nmdc:mga06r32_7714_c1_1172_2065 286
220 3300050511 nmdc:mga08y16_183066_c1 nmdc:mga08y16_183066_c1_480_1373 286
221 3300050511 nmdc:mga08y16_55715_c1 nmdc:mga08y16_55715_c1_1167_2036 286
222 3300050511 nmdc:mga08y16_71526_c1 nmdc:mga08y16_71526_c1_2624_3517 286
223 3300050512 nmdc:mga0n895_1054_c1 nmdc:mga0n895_1054_c1_3845_4738 286
224 3300050512 nmdc:mga0n895_14501_c1 nmdc:mga0n895_14501_c1_3825_4718 286
225 3300050513 nmdc:mga0rr50_2025_c1 nmdc:mga0rr50_2025_c1_196_1089 286
226 3300050513 nmdc:mga0rr50_30516_c1 nmdc:mga0rr50_30516_c1_1236_2129 286
227 3300050514 nmdc:mga08x19_5913_c1 nmdc:mga08x19_5913_c1_5423_6316 286
228 3300050514 nmdc:mga08x19_80696_c1 nmdc:mga08x19_80696_c1_1111_2004 286
229 3300050515 nmdc:mga0a205_1500_c1 nmdc:mga0a205_1500_c1_8541_9434 286
230 3300050515 nmdc:mga0a205_322_c1 nmdc:mga0a205_322_c1_3753_4646 286
231 3300050516 nmdc:mga0sz30_47896_c2 nmdc:mga0sz30_47896_c2_224_1105 286
232 3300053117 Ga0500593_000147 Ga0500593_000147_15489_16352 286
233 3300053131 Ga0500652_000274 Ga0500652_000274_8241_9104 286
234 3300053140 Ga0500573_0000001 Ga0500573_0000001_69083_69943 286
235 3300053730 Ga0500645_000070 Ga0500645_000070_33288_34166 286

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00483

NTP_transferase

Nucleotidyl transferase

53

290

0.98

PF12804

NTP_transf_3

MobA-like NTP transferase domain

54

207

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
3pkq-assembly3.cif.gz_C q83d variant of s. enterica rmla with dgtp 0.979 1 286
3pkq-assembly3.cif.gz_D q83d variant of s. enterica rmla with dgtp 0.979 1 286
1lvw-assembly1.cif.gz_B crystal structure of glucose-1-phosphate thymidylyltransferase, rmla, complex with dtdp 0.9788 1 285
3pkp-assembly1.cif.gz_A q83s variant of s. enterica rmla with datp 0.9779 2 286
5ids-assembly1.cif.gz_B crystal structure of a glucose-1-phosphate thymidylyltransferase from burkholderia vietnamiensis 0.9771 2 286
ID Description Score Start End Superfamily
4b2xA00 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.9614 2 285 3.90.550.10
4b2xA00 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.9516 2 285 3.90.550.10
4ecmA00 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.9196 1 237 3.90.550.10
af_Q58501_1_209_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.9095 1 222 3.90.550.10
5z0aE01 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.9002 1 222 3.90.550.10
ID Description Score Start End GO Terms
AF-A0A6I0DZI6-F1-model_v4 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.9995 1 106 GO:0008879
GO:0045226
AF-A0A846Q3P9-F1-model_v4 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.9985 1 98 GO:0008879
GO:0045226
AF-A0A351VA12-F1-model_v4 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.9984 1 112 GO:0008879
GO:0045226
AF-A0A6I3TEG1-F1-model_v4 deleted 0.9979 14 122
AF-A0A3D6A514-F1-model_v4 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.9974 2 98 GO:0008879
GO:0045226

Feature Viewer

pLDDT pTM Quality
92.1 0.91 High
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Predicted Structure (AlphaFold2)

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