F347155

General Info

Members Datasets Scaffolds Average Seq Length
234 159 223 283

Family's Representative Sequence

Representative Sequence 3300025297|Ga0209758_1017100|Ga0209758_10171004
Length 318
Sequence MRSPRFPLAVPRRKPGPRVSLLHRLRPWAPAFAGERIVFALPLLALGGAALWASAPAPTTPPATKPRRIVSLNLCADQLVLALADRDQIAGVTRNATDTEMSGEAAKARGLPVLKNSAEQILAIDPDLVVGMPASRSAPMRALKGHHFNLLDLESADTVDQIYASVRQTAVAVGHPERGAALVARMQAALARLGKPGGGKVAAYYQRRGFMTGTGTLIDDLMQRMGLVNLAAKLDKPPLSQLSLEEMVAAQPDYLIVESATDKIADQGTEMLHHPALAGIPRISIPQAWTVCGSPAYVQAAEGMAQQLARFQDRTHAR

Samples

Sample ID Description Type Environment
1 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
2 2512564014 Sphingobium sp. AP49 Isolate Rhizosphere
3 2599185354 Sphingomonas sp. NFR15 Isolate Rhizoplane
4 2643221563 Sphingopyxis sp. Root154 Isolate Unclassified
5 2643221608 Sphingopyxis sp. Root214 Isolate Unclassified
6 2751185897 Sphingomonas panacis DCY99 Isolate Unclassified
7 2818991438 Novosphingobium barchaimii 1192 Isolate Unclassified
8 2852653556 Sphingopyxis sp. JAI108 Isolate Rhizosphere
9 2852680915 Sphingopyxis sp. JAI128 Isolate Rhizosphere
10 2919709256 Sphingobium xenophagum 4256 Isolate Unclassified
11 3300001976 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7 Metagenome Rhizosphere
12 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
13 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
14 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
15 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
16 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
17 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
18 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
19 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
20 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
21 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
22 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
23 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
24 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
25 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
26 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
27 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
28 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
29 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
30 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
31 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
32 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
33 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
34 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
35 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
36 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
37 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
38 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
39 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
40 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
41 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
42 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
43 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
44 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
45 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
46 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
47 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
48 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
49 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
50 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
51 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
52 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
53 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
54 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
55 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
56 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
57 3300009982 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_189 metaG Metagenome Rhizosphere
58 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
59 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
61 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
62 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
64 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
66 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
68 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
87 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
88 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
89 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
92 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
93 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
94 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
95 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
96 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
97 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
98 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
99 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
100 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
101 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
102 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
103 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
104 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
105 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
106 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
107 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
108 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
109 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
110 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
111 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
112 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
113 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
114 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
115 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
116 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
117 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
118 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
119 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
120 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
121 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
122 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
123 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
124 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
125 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
129 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
131 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
134 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
135 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
137 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
138 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
139 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
140 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
141 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
142 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
143 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
144 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
145 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
146 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
147 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
148 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
149 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
150 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
151 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
152 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
153 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
154 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
155 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
156 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
157 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
158 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
159 8057101203 Sphingomonas lycopersici MMSM20 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.3
Metatranscriptomes 0
Isolates 4.7

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 34.19
Nodule 1.28
Rhizoplane 0.85
Rhizosphere 55.98
Stem 0
Stem Tuber 0
Unclassified 7.69

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24752J21851_1000124 3300001976 Bacteria 10538
2 JGI25152J39213_1015716 3300002773 Bacteria 1483
3 JGI25150J39212_1000288 3300002774 Bacteria 26051
4 JGI25153J46596_10000028 3300003215 Bacteria 209842
5 rootH2_10061522 3300003320 Bacteria 1801
6 Ga0055526_1004603 3300003771 Bacteria 8224
7 Ga0055537_1009210 3300003773 Bacteria 2200
8 Ga0055536_1000122 3300003781 Bacteria 66977
9 Ga0055536_1004222 3300003781 Bacteria 7419
10 Ga0055536_1013310 3300003781 Bacteria 2982
11 Ga0055534_1012402 3300003784 Bacteria 1686
12 Ga0055530_10000137 3300003791 Bacteria 64770
13 Ga0055530_10003629 3300003791 Bacteria 8661
14 Ga0055540_1004355 3300003792 Bacteria 6423
15 Ga0055531_10001890 3300003794 Bacteria 14669
16 Ga0055531_10004584 3300003794 Bacteria 8338
17 Ga0055531_10035692 3300003794 Bacteria 1550
18 Ga0055531_10035706 3300003794 Bacteria 1550
19 Ga0065165_1000840 3300005262 Bacteria 40310
20 Ga0065707_10098659 3300005295 Bacteria 3068
21 Ga0070670_100000014 3300005331 Bacteria 234648
22 Ga0070670_100103854 3300005331 Bacteria 2448
23 Ga0070680_100235602 3300005336 Bacteria 1546
24 Ga0070660_100068899 3300005339 Bacteria 2758
25 Ga0070661_100167971 3300005344 Bacteria 1665
26 Ga0070668_100047304 3300005347 Bacteria 3307
27 Ga0070669_100081319 3300005353 Bacteria 2413
28 Ga0070671_100143259 3300005355 Bacteria 2017
29 Ga0070667_100000912 3300005367 Bacteria 27324
30 Ga0070667_100002166 3300005367 Bacteria 17295
31 Ga0070667_100059931 3300005367 Bacteria 3221
32 Ga0070681_10373350 3300005458 Bacteria 1337
33 Ga0068855_100000377 3300005563 Bacteria 55242
34 Ga0068854_100001570 3300005578 Bacteria 13878
35 Ga0068854_100383396 3300005578 Bacteria 1159
36 Ga0068856_100057027 3300005614 Bacteria 3856
37 Ga0068859_100063849 3300005617 Bacteria 3714
38 Ga0068864_100000021 3300005618 Bacteria 262378
39 Ga0068863_100000009 3300005841 Bacteria 250538
40 Ga0068863_100003695 3300005841 Bacteria 15125
41 Ga0068860_100000342 3300005843 Bacteria 62993
42 Ga0068862_100000017 3300005844 Bacteria 247616
43 Ga0068862_100002799 3300005844 Bacteria 15279
44 Ga0068862_100217577 3300005844 Bacteria 1728
45 Ga0075368_10008570 3300006042 Bacteria 3647
46 Ga0075363_100004584 3300006048 Bacteria 6064
47 Ga0075362_10011252 3300006177 Bacteria 3521
48 Ga0075367_10002746 3300006178 Bacteria 8141
49 Ga0075367_10032226 3300006178 Bacteria 3014
50 Ga0075369_10014366 3300006186 Bacteria 3162
51 Ga0075370_10002709 3300006353 Bacteria 8290
52 Ga0075370_10037754 3300006353 Bacteria 2716
53 Ga0075370_10125855 3300006353 Bacteria 1494
54 Ga0075428_100081202 3300006844 Bacteria 3538
55 Ga0075429_100025421 3300006880 Bacteria 5139
56 Ga0075429_100156258 3300006880 Bacteria 1997
57 Ga0075429_100228171 3300006880 Unclassified 1631
58 Ga0097620_100063849 3300006931 Bacteria 3714
59 Ga0079104_1010302 3300006946 Bacteria 3091
60 Ga0079104_1011463 3300006946 Bacteria 2849
61 Ga0105251_10000079 3300009011 Bacteria 92478
62 Ga0105240_10003584 3300009093 Bacteria 24088
63 Ga0114129_10017609 3300009147 Bacteria 10169
64 Ga0105237_10529210 3300009545 Bacteria 1185
65 Ga0105249_10000597 3300009553 Bacteria 32867
66 Ga0105147_101122 3300009982 Bacteria 2136
67 Ga0157379_10031345 3300014968 Bacteria 4735
68 Ga0157379_10048571 3300014968 Bacteria 3788
69 Ga0209147_101446 3300025229 Bacteria 8586
70 Ga0207425_1000005 3300025245 Bacteria 900502
71 Ga0209129_1000228 3300025258 Bacteria 63465
72 Ga0209565_1000180 3300025263 Bacteria 78672
73 Ga0209565_1016715 3300025263 Bacteria 1626
74 Ga0209675_1000198 3300025291 Bacteria 64334
75 Ga0209676_1000045 3300025292 Bacteria 412331
76 Ga0209676_1000211 3300025292 Bacteria 129654
77 Ga0209676_1000972 3300025292 Bacteria 34519
78 Ga0209676_1008039 3300025292 Bacteria 4799
79 Ga0209025_1000296 3300025294 Bacteria 111440
80 Ga0209564_1000680 3300025295 Bacteria 50194
81 Ga0209564_1024149 3300025295 Bacteria 2085
82 Ga0209758_1000002 3300025297 Bacteria 1400310
83 Ga0209758_1017100 3300025297 Bacteria 3636
84 Ga0209050_1000001 3300025298 Bacteria 3563507
85 Ga0209050_1000047 3300025298 Bacteria 380561
86 Ga0209050_1001924 3300025298 Bacteria 19785
87 Ga0209050_1012063 3300025298 Bacteria 4014
88 Ga0209050_1014027 3300025298 Bacteria 3494
89 Ga0209051_1000193 3300025303 Bacteria 108391
90 Ga0209257_1000076 3300025304 Bacteria 324617
91 Ga0209257_1000404 3300025304 Bacteria 83872
92 Ga0209257_1000874 3300025304 Bacteria 42712
93 Ga0209257_1000917 3300025304 Bacteria 41014
94 Ga0207713_1001423 3300025735 Bacteria 19174
95 Ga0207695_10017352 3300025913 Bacteria 8377
96 Ga0207660_10199302 3300025917 Bacteria 1563
97 Ga0207657_10115647 3300025919 Bacteria 2210
98 Ga0207649_10221851 3300025920 Bacteria 1347
99 Ga0207681_10094527 3300025923 Bacteria 2142
100 Ga0207650_10000095 3300025925 Bacteria 116052
101 Ga0207644_10177957 3300025931 Bacteria 1665
102 Ga0207667_10000537 3300025949 Bacteria 50070
103 Ga0207712_10000536 3300025961 Bacteria 30969
104 Ga0207668_10000925 3300025972 Bacteria 17635
105 Ga0207640_10016615 3300025981 Bacteria 4286
106 Ga0207640_10328900 3300025981 Bacteria 1220
107 Ga0207658_10000201 3300025986 Bacteria 62567
108 Ga0207658_10000775 3300025986 Bacteria 27323
109 Ga0207641_10000017 3300026088 Bacteria 299119
110 Ga0207641_10001222 3300026088 Bacteria 25732
111 Ga0207676_10000037 3300026095 Bacteria 180826
112 Ga0209281_1023249 3300027111 Bacteria 1178
113 Ga0209813_10000061 3300027866 Bacteria 43981
114 Ga0209813_10000196 3300027866 Bacteria 18794
115 Ga0207428_10077232 3300027907 Bacteria 2607
116 Ga0268265_10000025 3300028380 Bacteria 250207
117 Ga0268265_10015820 3300028380 Bacteria 5172
118 Ga0268265_10095824 3300028380 Bacteria 2384
119 Ga0268264_10000389 3300028381 Bacteria 63172
120 Ga0307406_10204262 3300031901 Bacteria 1457
121 Ga0307412_10014433 3300031911 Bacteria 4660
122 Ga0307412_10021027 3300031911 Bacteria 3981
123 Ga0307412_10030115 3300031911 Bacteria 3413
124 Ga0307414_10000112 3300032004 Bacteria 57809
125 Ga0307414_10010332 3300032004 Bacteria 5410
126 Ga0307414_10024353 3300032004 Bacteria 3859
127 Ga0307411_10080339 3300032005 Bacteria 2242
128 Ga0495617_002332 3300046452 Bacteria 7627
129 Ga0495617_012551 3300046452 Bacteria 2889
130 Ga0495627_000024 3300046453 Bacteria 250480
131 Ga0495627_000456 3300046453 Bacteria 35514
132 Ga0495638_0000014 3300046460 Bacteria 417060
133 Ga0495596_0001790 3300046500 Bacteria 11969
134 Ga0495583_0000072 3300046506 Bacteria 182057
135 Ga0495583_0028016 3300046506 Bacteria 2775
136 Ga0495610_0000301 3300046512 Bacteria 52032
137 Ga0495610_0003482 3300046512 Bacteria 12245
138 Ga0495610_0011078 3300046512 Bacteria 5538
139 Ga0495616_0000015 3300046513 Bacteria 187751
140 Ga0495632_0001119 3300046519 Bacteria 22987
141 Ga0495643_0000093 3300046522 Bacteria 152412
142 Ga0495643_0092582 3300046522 Bacteria 1558
143 Ga0495648_0000021 3300046524 Bacteria 246945
144 Ga0495648_0010743 3300046524 Bacteria 6951
145 Ga0495654_0009200 3300046530 Bacteria 5417
146 Ga0495654_0010310 3300046530 Bacteria 5086
147 Ga0495609_0007243 3300046538 Bacteria 5563
148 Ga0495633_0011020 3300046558 Bacteria 4904
149 Ga0495633_0044299 3300046558 Bacteria 2109
150 Ga0495633_0083045 3300046558 Bacteria 1490
151 Ga0495668_0000024 3300046616 Bacteria 359469
152 Ga0495668_0001490 3300046616 Bacteria 22423
153 Ga0495625_0006793 3300046660 Bacteria 10110
154 Ga0495625_0014182 3300046660 Bacteria 6373
155 Ga0495625_0217345 3300046660 Bacteria 1254
156 Ga0495671_0000028 3300046692 Bacteria 234938
157 Ga0495673_0000058 3300047469 Bacteria 235044
158 Ga0495673_0017222 3300047469 Bacteria 3676
159 Ga0495681_0000056 3300047470 Bacteria 103692
160 Ga0495686_0019165 3300047472 Bacteria 4576
161 Ga0495686_0104790 3300047472 Bacteria 1702
162 Ga0495626_0004793 3300048091 Bacteria 8164
163 Ga0496115_0010547 3300048918 Bacteria 6909
164 Ga0496116_0000116 3300048919 Bacteria 172374
165 Ga0496117_0011861 3300048920 Bacteria 7754
166 Ga0496117_0034973 3300048920 Bacteria 3779
167 Ga0496117_0068251 3300048920 Bacteria 2401
168 Ga0496118_0000216 3300048921 Bacteria 100502
169 Ga0496122_0000745 3300048925 Bacteria 63497
170 Ga0496122_0079178 3300048925 Bacteria 2298
171 Ga0496123_0002386 3300048926 Bacteria 23531
172 Ga0496124_0003410 3300048927 Bacteria 19495
173 Ga0496125_0008850 3300048928 Bacteria 10464
174 Ga0496125_0286681 3300048928 Bacteria 1016
175 Ga0496126_0002818 3300048929 Bacteria 22809
176 Ga0495678_022534 3300049459 Bacteria 2752
177 Ga0501032_0009182 3300049569 Bacteria 7168
178 Ga0501033_0002144 3300049570 Bacteria 17070
179 Ga0501033_0040441 3300049570 Bacteria 3480
180 Ga0501034_0018815 3300049571 Bacteria 7079
181 Ga0501034_0206485 3300049571 Bacteria 1920
182 Ga0501036_0030230 3300049572 Bacteria 4577
183 Ga0501036_0074740 3300049572 Bacteria 2866
184 Ga0501037_0032598 3300049573 Bacteria 3847
185 Ga0501037_0084470 3300049573 Bacteria 2299
186 Ga0501039_0003879 3300049575 Bacteria 11223
187 Ga0501043_0028385 3300049579 Bacteria 4392
188 Ga0501047_0210409 3300049581 Bacteria 1803
189 Ga0501223_000039 3300049663 Bacteria 45537
190 Ga0501249_000437 3300049679 Bacteria 10390
191 Ga0501035_0003659 3300049822 Bacteria 14662
192 Ga0501035_0161148 3300049822 Bacteria 1941
193 Ga0501044_0000995 3300049823 Bacteria 34093
194 Ga0501044_0033594 3300049823 Bacteria 5389
195 nmdc:mga03683_4698_c1 3300050489 Bacteria 4559
196 nmdc:mga03n38_59832_c1 3300050490 Bacteria 1730
197 nmdc:mga00v17_23087_c1 3300050491 Bacteria 3596
198 nmdc:mga0k408_28126_c1 3300050493 Bacteria 3196
199 nmdc:mga06z11_475_c1 3300050494 Bacteria 14837
200 nmdc:mga06z11_78_c1 3300050494 Bacteria 40825
201 nmdc:mga04h51_132_c1 3300050495 Bacteria 21782
202 nmdc:mga04h51_41_c1 3300050495 Bacteria 43980
203 nmdc:mga07m45_2280_c1 3300050496 Bacteria 8965
204 nmdc:mga07m45_2966_c1 3300050496 Bacteria 8069
205 nmdc:mga07m45_47304_c1 3300050496 Bacteria 2418
206 nmdc:mga05p37_35600_c1 3300050507 Bacteria 6106
207 nmdc:mga09592_210110_c1 3300050508 Bacteria 1686
208 nmdc:mga0sz30_854_c1 3300050516 Bacteria 10985
209 Ga0500643_014215 3300053087 Bacteria 2776
210 Ga0500592_000047 3300053116 Bacteria 36285
211 Ga0500592_000068 3300053116 Bacteria 27176
212 Ga0500595_019363 3300053119 Bacteria 2471
213 Ga0500607_000021 3300053121 Bacteria 99974
214 Ga0500658_0049953 3300053134 Bacteria 1706
215 Ga0500559_0000887 3300053136 Bacteria 19149
216 Ga0500568_0013909 3300053139 Bacteria 3653
217 Ga0500568_0095308 3300053139 Bacteria 1120
218 Ga0500604_0071279 3300053151 Bacteria 1108
219 Ga0500622_0002087 3300053156 Bacteria 14883
220 Ga0500627_0000008 3300053158 Bacteria 161914
221 Ga0500627_0000410 3300053158 Bacteria 11568
222 Ga0500637_0001437 3300053178 Bacteria 10142
223 Ga0500645_009844 3300053730 Bacteria 3195

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300050507 nmdc:mga05p37_35600_c1 nmdc:mga05p37_35600_c1_91_801 222
2 3300025229 Ga0209147_101446 Ga0209147_1014464 249
3 3300047469 Ga0495673_0017222 Ga0495673_0017222_362_1183 252
4 3300049573 Ga0501037_0084470 Ga0501037_0084470_74_928 254
5 3300046512 Ga0495610_0000301 Ga0495610_0000301_9808_10686 257
6 3300046522 Ga0495643_0000093 Ga0495643_0000093_9540_10406 257
7 3300048928 Ga0496125_0286681 Ga0496125_0286681_217_999 257
8 3300053087 Ga0500643_014215 Ga0500643_014215_1354_2205 258
9 3300049459 Ga0495678_022534 Ga0495678_022534_720_1580 260
10 3300046558 Ga0495633_0044299 Ga0495633_0044299_749_1555 261
11 iso_pu_bacteria 2599185354 2600200620 261
12 3300005331 Ga0070670_100103854 Ga0070670_1001038542 263
13 3300009093 Ga0105240_10003584 Ga0105240_1000358418 263
14 3300005295 Ga0065707_10098659 Ga0065707_100986592 264
15 3300006880 Ga0075429_100156258 Ga0075429_1001562582 264
16 3300009982 Ga0105147_101122 Ga0105147_1011222 264
17 3300049570 Ga0501033_0040441 Ga0501033_0040441_1148_2002 264
18 3300049571 Ga0501034_0018815 Ga0501034_0018815_1571_2425 264
19 3300049572 Ga0501036_0074740 Ga0501036_0074740_1364_2218 264
20 3300049579 Ga0501043_0028385 Ga0501043_0028385_957_1811 264
21 3300049663 Ga0501223_000039 Ga0501223_000039_35491_36351 264
22 3300049822 Ga0501035_0161148 Ga0501035_0161148_434_1288 264
23 3300049823 Ga0501044_0033594 Ga0501044_0033594_1149_2003 264
24 3300050508 nmdc:mga09592_210110_c1 nmdc:mga09592_210110_c1_626_1489 264
25 iso_pu_bacteria 8057101203 8057103983 265
26 3300003320 rootH2_10061522 rootH2_100615221 266
27 3300014968 Ga0157379_10031345 Ga0157379_100313455 266
28 3300053116 Ga0500592_000068 Ga0500592_000068_6674_7486 267
29 3300053139 Ga0500568_0095308 Ga0500568_0095308_126_938 267
30 3300031911 Ga0307412_10014433 Ga0307412_100144335 268
31 3300005262 Ga0065165_1000840 Ga0065165_100084026 269
32 iso_pu_bacteria 2751185897 2753763600 269
33 3300005617 Ga0068859_100063849 Ga0068859_1000638491 271
34 3300006844 Ga0075428_100081202 Ga0075428_1000812024 271
35 3300006880 Ga0075429_100025421 Ga0075429_1000254214 271
36 3300006880 Ga0075429_100228171 Ga0075429_1002281713 271
37 3300006931 Ga0097620_100063849 Ga0097620_1000638495 271
38 3300009147 Ga0114129_10017609 Ga0114129_100176097 271
39 3300027907 Ga0207428_10077232 Ga0207428_100772323 271
40 3300053178 Ga0500637_0001437 Ga0500637_0001437_3110_3943 271
41 iso_pu_bacteria 2919709256 2919712083 271
42 3300048919 Ga0496116_0000116 Ga0496116_0000116_19391_20242 272
43 3300048920 Ga0496117_0068251 Ga0496117_0068251_517_1368 272
44 3300048925 Ga0496122_0000745 Ga0496122_0000745_29413_30264 272
45 3300048926 Ga0496123_0002386 Ga0496123_0002386_18920_19771 272
46 3300048927 Ga0496124_0003410 Ga0496124_0003410_1207_2058 272
47 3300048928 Ga0496125_0008850 Ga0496125_0008850_8620_9471 272
48 3300048929 Ga0496126_0002818 Ga0496126_0002818_18778_19629 272
49 iso_pu_bacteria 2818991438 2819551773 272
50 3300006042 Ga0075368_10008570 Ga0075368_100085704 273
51 3300006177 Ga0075362_10011252 Ga0075362_100112524 273
52 3300006178 Ga0075367_10032226 Ga0075367_100322262 273
53 3300006946 Ga0079104_1011463 Ga0079104_10114633 273
54 3300027866 Ga0209813_10000196 Ga0209813_1000019613 273
55 3300049679 Ga0501249_000437 Ga0501249_000437_2041_2928 273
56 3300050489 nmdc:mga03683_4698_c1 nmdc:mga03683_4698_c1_1830_2708 273
57 3300050491 nmdc:mga00v17_23087_c1 nmdc:mga00v17_23087_c1_1857_2735 273
58 3300050493 nmdc:mga0k408_28126_c1 nmdc:mga0k408_28126_c1_918_1796 273
59 3300050494 nmdc:mga06z11_475_c1 nmdc:mga06z11_475_c1_1857_2735 273
60 3300050495 nmdc:mga04h51_132_c1 nmdc:mga04h51_132_c1_1823_2701 273
61 3300050496 nmdc:mga07m45_2966_c1 nmdc:mga07m45_2966_c1_5335_6213 273
62 3300009545 Ga0105237_10529210 Ga0105237_105292103 274
63 3300046453 Ga0495627_000024 Ga0495627_000024_232865_233710 274
64 3300046524 Ga0495648_0010743 Ga0495648_0010743_1014_1859 274
65 3300046530 Ga0495654_0010310 Ga0495654_0010310_154_984 275
66 3300053116 Ga0500592_000047 Ga0500592_000047_10714_11544 275
67 3300053158 Ga0500627_0000410 Ga0500627_0000410_8306_9136 275
68 3300005336 Ga0070680_100235602 Ga0070680_1002356022 276
69 3300005339 Ga0070660_100068899 Ga0070660_1000688992 276
70 3300005344 Ga0070661_100167971 Ga0070661_1001679712 276
71 3300005347 Ga0070668_100047304 Ga0070668_1000473043 276
72 3300005353 Ga0070669_100081319 Ga0070669_1000813192 276
73 3300005355 Ga0070671_100143259 Ga0070671_1001432592 276
74 3300005367 Ga0070667_100059931 Ga0070667_1000599311 276
75 3300005458 Ga0070681_10373350 Ga0070681_103733502 276
76 3300005563 Ga0068855_100000377 Ga0068855_10000037732 276
77 3300005578 Ga0068854_100383396 Ga0068854_1003833962 276
78 3300005614 Ga0068856_100057027 Ga0068856_1000570272 276
79 3300005844 Ga0068862_100002799 Ga0068862_1000027993 276
80 3300006048 Ga0075363_100004584 Ga0075363_1000045842 276
81 3300006178 Ga0075367_10002746 Ga0075367_100027468 276
82 3300006353 Ga0075370_10037754 Ga0075370_100377542 276
83 3300006353 Ga0075370_10125855 Ga0075370_101258552 276
84 3300025913 Ga0207695_10017352 Ga0207695_1001735210 276
85 3300025917 Ga0207660_10199302 Ga0207660_101993022 276
86 3300025919 Ga0207657_10115647 Ga0207657_101156472 276
87 3300025920 Ga0207649_10221851 Ga0207649_102218512 276
88 3300025923 Ga0207681_10094527 Ga0207681_100945272 276
89 3300025931 Ga0207644_10177957 Ga0207644_101779572 276
90 3300025949 Ga0207667_10000537 Ga0207667_1000053718 276
91 3300025972 Ga0207668_10000925 Ga0207668_100009259 276
92 3300025981 Ga0207640_10328900 Ga0207640_103289001 276
93 3300027866 Ga0209813_10000061 Ga0209813_1000006141 276
94 3300028380 Ga0268265_10015820 Ga0268265_100158203 276
95 3300046452 Ga0495617_002332 Ga0495617_002332_6449_7309 276
96 3300046453 Ga0495627_000456 Ga0495627_000456_10027_10887 276
97 3300046512 Ga0495610_0003482 Ga0495610_0003482_8088_8948 276
98 3300046558 Ga0495633_0011020 Ga0495633_0011020_1086_1946 276
99 3300047470 Ga0495681_0000056 Ga0495681_0000056_46861_47721 276
100 3300047472 Ga0495686_0104790 Ga0495686_0104790_676_1536 276
101 3300048920 Ga0496117_0011861 Ga0496117_0011861_4261_5118 276
102 3300048925 Ga0496122_0079178 Ga0496122_0079178_1102_1959 276
103 3300050490 nmdc:mga03n38_59832_c1 nmdc:mga03n38_59832_c1_514_1374 276
104 3300050494 nmdc:mga06z11_78_c1 nmdc:mga06z11_78_c1_18989_19849 276
105 3300050495 nmdc:mga04h51_41_c1 nmdc:mga04h51_41_c1_5224_6084 276
106 3300050496 nmdc:mga07m45_47304_c1 nmdc:mga07m45_47304_c1_1099_1953 276
107 3300053136 Ga0500559_0000887 Ga0500559_0000887_9512_10366 276
108 iso_pu_bacteria 2512564014 2512645310 276
109 iso_pu_bacteria 2852680915 2852681912 276
110 3300046506 Ga0495583_0028016 Ga0495583_0028016_735_1610 277
111 3300046538 Ga0495609_0007243 Ga0495609_0007243_4577_5452 277
112 3300046660 Ga0495625_0014182 Ga0495625_0014182_772_1647 277
113 iso_pu_bacteria 2510917021 2511128300 277
114 iso_pu_bacteria 2643221563 2643833673 277
115 iso_pu_bacteria 2643221608 2644054600 277
116 iso_pu_bacteria 2852653556 2852656574 277
117 3300003771 Ga0055526_1004603 Ga0055526_10046036 278
118 3300005367 Ga0070667_100002166 Ga0070667_10000216614 278
119 3300005841 Ga0068863_100003695 Ga0068863_1000036958 278
120 3300005843 Ga0068860_100000342 Ga0068860_10000034243 278
121 3300005844 Ga0068862_100217577 Ga0068862_1002175772 278
122 3300025295 Ga0209564_1000680 Ga0209564_10006803 278
123 3300025986 Ga0207658_10000201 Ga0207658_1000020121 278
124 3300026088 Ga0207641_10001222 Ga0207641_1000122213 278
125 3300028380 Ga0268265_10095824 Ga0268265_100958242 278
126 3300028381 Ga0268264_10000389 Ga0268264_1000038913 278
127 3300005578 Ga0068854_100001570 Ga0068854_1000015702 279
128 3300025981 Ga0207640_10016615 Ga0207640_100166152 279
129 3300046500 Ga0495596_0001790 Ga0495596_0001790_908_1780 279
130 3300046512 Ga0495610_0011078 Ga0495610_0011078_639_1511 279
131 3300046522 Ga0495643_0092582 Ga0495643_0092582_97_969 279
132 3300047472 Ga0495686_0019165 Ga0495686_0019165_1436_2290 279
133 3300048091 Ga0495626_0004793 Ga0495626_0004793_1479_2351 279
134 3300049569 Ga0501032_0009182 Ga0501032_0009182_5149_5997 279
135 3300049570 Ga0501033_0002144 Ga0501033_0002144_11965_12813 279
136 3300049571 Ga0501034_0206485 Ga0501034_0206485_790_1638 279
137 3300049572 Ga0501036_0030230 Ga0501036_0030230_2886_3734 279
138 3300049573 Ga0501037_0032598 Ga0501037_0032598_207_1055 279
139 3300049575 Ga0501039_0003879 Ga0501039_0003879_6649_7497 279
140 3300049581 Ga0501047_0210409 Ga0501047_0210409_507_1355 279
141 3300049822 Ga0501035_0003659 Ga0501035_0003659_10111_10959 279
142 3300049823 Ga0501044_0000995 Ga0501044_0000995_27045_27893 279
143 3300053121 Ga0500607_000021 Ga0500607_000021_72933_73793 279
144 3300003781 Ga0055536_1000122 Ga0055536_100012235 281
145 3300003781 Ga0055536_1004222 Ga0055536_10042222 281
146 3300003781 Ga0055536_1013310 Ga0055536_10133102 281
147 3300003784 Ga0055534_1012402 Ga0055534_10124022 281
148 3300003791 Ga0055530_10000137 Ga0055530_1000013759 281
149 3300003794 Ga0055531_10001890 Ga0055531_100018909 281
150 3300003794 Ga0055531_10004584 Ga0055531_100045847 281
151 3300025291 Ga0209675_1000198 Ga0209675_100019829 281
152 3300025292 Ga0209676_1000045 Ga0209676_1000045105 281
153 3300025292 Ga0209676_1000211 Ga0209676_100021152 281
154 3300025292 Ga0209676_1000972 Ga0209676_10009722 281
155 3300025298 Ga0209050_1000047 Ga0209050_1000047237 281
156 3300025298 Ga0209050_1001924 Ga0209050_100192414 281
157 3300025298 Ga0209050_1012063 Ga0209050_10120634 281
158 3300025304 Ga0209257_1000076 Ga0209257_1000076193 281
159 3300025304 Ga0209257_1000404 Ga0209257_100040445 281
160 3300031901 Ga0307406_10204262 Ga0307406_102042622 281
161 3300031911 Ga0307412_10021027 Ga0307412_100210273 281
162 3300031911 Ga0307412_10030115 Ga0307412_100301152 281
163 3300032004 Ga0307414_10000112 Ga0307414_1000011241 281
164 3300032004 Ga0307414_10010332 Ga0307414_100103324 281
165 3300032004 Ga0307414_10024353 Ga0307414_100243532 281
166 3300032005 Ga0307411_10080339 Ga0307411_100803393 281
167 3300046530 Ga0495654_0009200 Ga0495654_0009200_3202_4059 281
168 3300046616 Ga0495668_0000024 Ga0495668_0000024_293033_293887 281
169 3300046660 Ga0495625_0006793 Ga0495625_0006793_8749_9603 281
170 3300053134 Ga0500658_0049953 Ga0500658_0049953_478_1332 281
171 3300053139 Ga0500568_0013909 Ga0500568_0013909_248_1102 281
172 3300053158 Ga0500627_0000008 Ga0500627_0000008_35746_36603 281
173 3300053730 Ga0500645_009844 Ga0500645_009844_742_1605 281
174 3300002773 JGI25152J39213_1015716 JGI25152J39213_10157161 282
175 3300002774 JGI25150J39212_1000288 JGI25150J39212_10002889 282
176 3300003215 JGI25153J46596_10000028 JGI25153J46596_10000028186 282
177 3300003791 Ga0055530_10003629 Ga0055530_100036295 282
178 3300003792 Ga0055540_1004355 Ga0055540_10043554 282
179 3300003794 Ga0055531_10035692 Ga0055531_100356922 282
180 3300003794 Ga0055531_10035706 Ga0055531_100357062 282
181 3300025245 Ga0207425_1000005 Ga0207425_1000005182 282
182 3300025258 Ga0209129_1000228 Ga0209129_100022834 282
183 3300025263 Ga0209565_1016715 Ga0209565_10167152 282
184 3300025292 Ga0209676_1008039 Ga0209676_10080393 282
185 3300025294 Ga0209025_1000296 Ga0209025_100029685 282
186 3300025297 Ga0209758_1000002 Ga0209758_10000021162 282
187 3300025298 Ga0209050_1000001 Ga0209050_10000011150 282
188 3300025298 Ga0209050_1014027 Ga0209050_10140271 282
189 3300025303 Ga0209051_1000193 Ga0209051_100019325 282
190 3300025304 Ga0209257_1000874 Ga0209257_100087415 282
191 3300025304 Ga0209257_1000917 Ga0209257_100091715 282
192 3300046513 Ga0495616_0000015 Ga0495616_0000015_16189_17046 282
193 3300046616 Ga0495668_0001490 Ga0495668_0001490_3494_4351 282
194 3300046660 Ga0495625_0217345 Ga0495625_0217345_234_1100 282
195 3300048918 Ga0496115_0010547 Ga0496115_0010547_2851_3711 282
196 3300053119 Ga0500595_019363 Ga0500595_019363_39_905 282
197 3300053151 Ga0500604_0071279 Ga0500604_0071279_44_901 282
198 3300053156 Ga0500622_0002087 Ga0500622_0002087_7558_8424 282
199 3300006186 Ga0075369_10014366 Ga0075369_100143662 283
200 3300006353 Ga0075370_10002709 Ga0075370_100027093 283
201 3300046452 Ga0495617_012551 Ga0495617_012551_1705_2568 283
202 3300046519 Ga0495632_0001119 Ga0495632_0001119_9125_9988 283
203 3300050496 nmdc:mga07m45_2280_c1 nmdc:mga07m45_2280_c1_762_1631 283
204 3300050516 nmdc:mga0sz30_854_c1 nmdc:mga0sz30_854_c1_8239_9117 283
205 3300046460 Ga0495638_0000014 Ga0495638_0000014_255164_256033 284
206 3300046506 Ga0495583_0000072 Ga0495583_0000072_20366_21235 284
207 3300046524 Ga0495648_0000021 Ga0495648_0000021_172652_173521 284
208 3300046558 Ga0495633_0083045 Ga0495633_0083045_498_1367 284
209 3300046692 Ga0495671_0000028 Ga0495671_0000028_73194_74063 284
210 3300047469 Ga0495673_0000058 Ga0495673_0000058_160928_161797 284
211 3300006946 Ga0079104_1010302 Ga0079104_10103022 285
212 3300027111 Ga0209281_1023249 Ga0209281_10232492 285
213 3300003773 Ga0055537_1009210 Ga0055537_10092103 286
214 3300025263 Ga0209565_1000180 Ga0209565_100018040 286
215 3300025295 Ga0209564_1024149 Ga0209564_10241493 286
216 3300025297 Ga0209758_1017100 Ga0209758_10171004 286
217 3300001976 JGI24752J21851_1000124 JGI24752J21851_10001244 290
218 3300005331 Ga0070670_100000014 Ga0070670_100000014206 290
219 3300005367 Ga0070667_100000912 Ga0070667_10000091218 290
220 3300005618 Ga0068864_100000021 Ga0068864_100000021218 290
221 3300005841 Ga0068863_100000009 Ga0068863_100000009225 290
222 3300005844 Ga0068862_100000017 Ga0068862_100000017221 290
223 3300009011 Ga0105251_10000079 Ga0105251_1000007918 290
224 3300009553 Ga0105249_10000597 Ga0105249_100005978 290
225 3300014968 Ga0157379_10048571 Ga0157379_100485713 290
226 3300025735 Ga0207713_1001423 Ga0207713_10014235 290
227 3300025925 Ga0207650_10000095 Ga0207650_1000009515 290
228 3300025961 Ga0207712_10000536 Ga0207712_1000053616 290
229 3300025986 Ga0207658_10000775 Ga0207658_1000077518 290
230 3300026088 Ga0207641_10000017 Ga0207641_10000017245 290
231 3300026095 Ga0207676_10000037 Ga0207676_1000003741 290
232 3300028380 Ga0268265_10000025 Ga0268265_1000002518 290
233 3300048920 Ga0496117_0034973 Ga0496117_0034973_1087_1980 290
234 3300048921 Ga0496118_0000216 Ga0496118_0000216_15927_16820 290

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01497

Peripla_BP_2

Periplasmic binding protein

69

283

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2rg7-assembly1.cif.gz_C apo- crystal structure of a periplasmic heme binding protein from shigella dysenteriae 0.7754 39 280
4m7o-assembly1.cif.gz_A the crystal structure of a possible an iron-binding (periplasmic solute-binding) protein from staphylococcus epidermidis atcc 12228. 0.7735 36 280
5mbq-assembly3.cif.gz_C ceue (h227a variant) a periplasmic protein from campylobacter jejuni 0.7599 36 278
5giz-assembly2.cif.gz_B periplasmic heme-binding protein bhut in apo form 0.7538 39 278
4n01-assembly2.cif.gz_B the crystal structure of a periplasmic binding protein from veillonella parvula dsm 2008 0.7518 38 285
ID Description Score Start End Superfamily
3pshA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain 0.8041 37 157 3.40.50.1980
af_Q2G0F6_19_140_3.40.50.1980 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain 0.7987 39 157 3.40.50.1980
5gj1A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain 0.7949 40 157 3.40.50.1980
2rg7D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain 0.7938 39 157 3.40.50.1980
2rg7D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain 0.7763 39 157 3.40.50.1980
ID Description Score Start End GO Terms
AF-A0A1G5SVG9-F1-model_v4 Iron complex transport system substrate-binding protein 0.9476 36 282 GO:0071281
AF-A0A7W7JYI3-F1-model_v4 Iron complex transport system substrate-binding protein 0.9441 37 282
AF-A0A1X1QTJ3-F1-model_v4 Fe/B12 periplasmic-binding domain-containing protein 0.937 43 278 GO:0071281
AF-A0A1B3MW20-F1-model_v4 Periplasmic binding family protein 0.9351 28 278
AF-A0A1I5G4P6-F1-model_v4 Iron complex transport system substrate-binding protein 0.9311 35 282 GO:0071281

Feature Viewer

pLDDT pTM Quality
82.28 0.79 High
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Predicted Structure (AlphaFold2)

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