F344191

General Info

Members Datasets Scaffolds Average Seq Length
231 170 221 321

Family's Representative Sequence

Representative Sequence 3300031456|Ga0307513_10057153|Ga0307513_100571534
Length 358
Sequence MGQREARYIHGVPPCKAPCDEMFQFGDKAVYKPQQPTRAGVVKALEKIGKIVSATPLLPLPFCDETLLCKAESLQPMGAFKLRGAWHRLTDLADAERSAGVVAFSSGNHAQGVAWAARRLGLAAVIVMPADAPAAKLEATRALGAEVVLYDRATGSRESIAASLAAERGAVLVPSFDDPWVIEGQGSAGLEAAAQMAAMGLAPPDQVVIPCGGGGLSAGIALALPEAEIIIVEPDGWDDMTRSLMGGVIVPVGPNPPPTACDALQTTRVSPLTFDVLKAQGARGVAVGEAEIAAAQRHAFRHLRLVIEPGGAVALAALLAGKVKPARRTLVLLSGGNVDAAAFARVLDEGGETAKPAP

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
3 2643221588 Altererythrobacter sp. Root672 Isolate Unclassified
4 2830075706 Sphingomonas jinjuensis DSM 21457 Isolate Rhizosphere
5 2848297114 Croceibacterium ferulae EGI 63111 Isolate Unclassified
6 2882806704 Pelagerythrobacter rhizovicinus AY-3R Isolate Rhizosphere
7 2885429604 Sphingomonas sp. WZY 27 Isolate Rhizosphere
8 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
9 2896253425 Aurantiacibacter rhizosphaerae GH3-10 Isolate Rhizosphere
10 2990265787 Sphingomonas sp. SORGH_AS802 Isolate Aerial Root
11 2993693658 Sphingomonas sp. SORGH_AS438 Isolate Aerial Root
12 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
13 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
14 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
15 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
16 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
17 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
18 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
19 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
20 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
21 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
22 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
23 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
24 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
25 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
26 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
27 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
28 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
29 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
30 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
31 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
32 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
33 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
34 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
35 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
36 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
37 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
38 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
39 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
40 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
41 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
42 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
43 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
46 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
47 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
49 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
51 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
52 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
53 3300009987 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_213 metaG Metagenome Rhizosphere
54 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
55 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
56 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
57 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
58 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
59 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
60 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
61 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
64 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
65 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
83 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
87 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
88 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
89 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
90 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
91 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
92 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
93 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
94 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
95 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
96 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
97 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
98 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
99 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
100 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
101 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
102 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
103 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
104 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
105 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
106 3300042147 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_080116_2618 Metagenome Rhizosphere
107 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
108 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
109 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
110 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
111 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
112 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
113 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
114 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
115 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
116 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
117 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
118 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
119 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
120 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
121 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
122 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
123 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
124 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
125 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
126 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
127 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
128 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
129 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
130 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
131 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
132 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
133 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
134 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
135 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
136 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
140 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
142 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
143 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
144 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
145 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
146 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
147 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
148 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
149 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
150 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
151 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
152 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
153 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
154 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
155 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
156 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
157 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
158 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
159 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
160 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
161 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
162 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
163 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
164 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
165 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
166 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
167 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
168 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
169 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
170 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.67
Metatranscriptomes 0
Isolates 4.33

Biome Distribution

Category Percentage (%)
Aerial Root 0.87
Bulb 0
Endosphere 13.85
Nodule 0
Rhizoplane 0.87
Rhizosphere 77.06
Stem 0
Stem Tuber 0
Unclassified 7.36

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2402994 2162886007 Bacteria 55296
2 SwRhRL2b_contig_2586087 2162886007 Bacteria 50518
3 JGI25150J39212_1000046 3300002774 Bacteria 78180
4 JGI25151J46595_10029646 3300003187 Bacteria 2163
5 JGI25153J46596_10000099 3300003215 Bacteria 100036
6 Ga0055526_1011158 3300003771 Bacteria 4087
7 Ga0055536_1015011 3300003781 Bacteria 2677
8 Ga0055530_10021725 3300003791 Bacteria 1884
9 Ga0055530_10029393 3300003791 Bacteria 1469
10 Ga0055540_1001420 3300003792 Bacteria 14268
11 Ga0065704_10000191 3300005289 Bacteria 318191
12 Ga0065707_10093355 3300005295 Bacteria 3639
13 Ga0070670_100128777 3300005331 Bacteria 2185
14 Ga0070668_100007155 3300005347 Bacteria 8273
15 Ga0070668_100026661 3300005347 Bacteria 4386
16 Ga0070669_100000990 3300005353 Bacteria 20731
17 Ga0070675_100028352 3300005354 Bacteria 4507
18 Ga0070671_100037099 3300005355 Bacteria 4042
19 Ga0070674_100076498 3300005356 Bacteria 2380
20 Ga0070659_100010537 3300005366 Bacteria 6805
21 Ga0070667_100000678 3300005367 Bacteria 33073
22 Ga0070701_10235680 3300005438 Bacteria 1098
23 Ga0070679_100256894 3300005530 Bacteria 1703
24 Ga0070665_100000038 3300005548 Bacteria 309230
25 Ga0070665_100000558 3300005548 Bacteria 51892
26 Ga0070665_100199634 3300005548 Bacteria 2001
27 Ga0070704_100253879 3300005549 Bacteria 1445
28 Ga0068854_100002051 3300005578 Bacteria 12337
29 Ga0068859_100000004 3300005617 Bacteria 470249
30 Ga0068864_100024249 3300005618 Bacteria 5102
31 Ga0068863_100004204 3300005841 Bacteria 14218
32 Ga0068863_100017898 3300005841 Bacteria 6781
33 Ga0068858_100002855 3300005842 Bacteria 17365
34 Ga0068858_100026458 3300005842 Bacteria 5389
35 Ga0068860_100005064 3300005843 Bacteria 13404
36 Ga0068860_100155697 3300005843 Bacteria 2202
37 Ga0068862_100000179 3300005844 Bacteria 69539
38 Ga0068862_100011970 3300005844 Bacteria 7165
39 Ga0068862_100062001 3300005844 Bacteria 3215
40 Ga0075428_100021494 3300006844 Bacteria 7141
41 Ga0075433_10000885 3300006852 Bacteria 21073
42 Ga0075434_100000099 3300006871 Bacteria 48394
43 Ga0068865_100103746 3300006881 Bacteria 2086
44 Ga0097620_100000004 3300006931 Bacteria 470249
45 Ga0075435_100064282 3300007076 Bacteria 2981
46 Ga0105251_10002779 3300009011 Bacteria 13307
47 Ga0111539_10099544 3300009094 Bacteria 3414
48 Ga0111539_10165582 3300009094 Bacteria 2585
49 Ga0105247_10106231 3300009101 Bacteria 1801
50 Ga0114129_10299487 3300009147 Bacteria 2144
51 Ga0105241_10156066 3300009174 Bacteria 1872
52 Ga0105248_10005723 3300009177 Bacteria 13646
53 Ga0105248_10009070 3300009177 Bacteria 10938
54 Ga0105249_10000004 3300009553 Bacteria 368014
55 Ga0105249_10055354 3300009553 Bacteria 3628
56 Ga0105030_102456 3300009987 Bacteria 1610
57 Ga0157378_10020962 3300013297 Bacteria 5750
58 Ga0163162_10020509 3300013306 Bacteria 6494
59 Ga0157380_10036187 3300014326 Bacteria 3818
60 Ga0157380_10041075 3300014326 Bacteria 3608
61 Ga0157377_10145603 3300014745 Bacteria 1460
62 Ga0157379_10046263 3300014968 Bacteria 3882
63 Ga0207425_1000020 3300025245 Bacteria 372623
64 Ga0209129_1000706 3300025258 Bacteria 21658
65 Ga0209565_1000151 3300025263 Bacteria 93781
66 Ga0209673_1010336 3300025273 Bacteria 3941
67 Ga0209025_1000366 3300025294 Bacteria 95707
68 Ga0209758_1000004 3300025297 Bacteria 1375322
69 Ga0209050_1000585 3300025298 Bacteria 59049
70 Ga0209051_1000251 3300025303 Bacteria 90973
71 Ga0207713_1009744 3300025735 Bacteria 5380
72 Ga0207671_10002043 3300025914 Bacteria 22165
73 Ga0207681_10002809 3300025923 Bacteria 11019
74 Ga0207681_10084253 3300025923 Bacteria 2253
75 Ga0207681_10255131 3300025923 Bacteria 1371
76 Ga0207650_10060888 3300025925 Bacteria 2817
77 Ga0207650_10215382 3300025925 Bacteria 1544
78 Ga0207659_10213316 3300025926 Bacteria 1548
79 Ga0207644_10004801 3300025931 Bacteria 8802
80 Ga0207690_10035378 3300025932 Bacteria 3226
81 Ga0207669_10178185 3300025937 Bacteria 1521
82 Ga0207711_10015561 3300025941 Bacteria 6314
83 Ga0207711_10026316 3300025941 Bacteria 4880
84 Ga0207712_10000008 3300025961 Bacteria 527957
85 Ga0207668_10011407 3300025972 Bacteria 5398
86 Ga0207668_10016872 3300025972 Bacteria 4568
87 Ga0207640_10003032 3300025981 Bacteria 9041
88 Ga0207658_10020730 3300025986 Bacteria 4553
89 Ga0207658_10070267 3300025986 Bacteria 2648
90 Ga0207703_10001489 3300026035 Bacteria 21371
91 Ga0207703_10002076 3300026035 Bacteria 17618
92 Ga0207641_10005158 3300026088 Bacteria 11175
93 Ga0207641_10009520 3300026088 Bacteria 8008
94 Ga0207641_10023961 3300026088 Bacteria 5031
95 Ga0207428_10060170 3300027907 Bacteria 3009
96 Ga0207428_10279200 3300027907 Bacteria 1240
97 Ga0268266_10000118 3300028379 Bacteria 163466
98 Ga0268266_10001483 3300028379 Bacteria 27834
99 Ga0268265_10000199 3300028380 Bacteria 69539
100 Ga0268265_10034305 3300028380 Bacteria 3697
101 Ga0268264_10000936 3300028381 Bacteria 30266
102 Ga0268264_10025272 3300028381 Bacteria 4851
103 Ga0307515_10304567 3300028794 Bacteria 1275
104 Ga0307513_10057153 3300031456 Bacteria 4159
105 Ga0307408_100022460 3300031548 Bacteria 4287
106 Ga0307508_10025727 3300031616 Bacteria 5334
107 Ga0316575_10061145 3300031665 Bacteria 1505
108 Ga0307405_10002158 3300031731 Bacteria 8587
109 Ga0307413_10029573 3300031824 Bacteria 3067
110 Ga0307413_10070324 3300031824 Bacteria 2200
111 Ga0307410_10027502 3300031852 Bacteria 3596
112 Ga0307410_10210542 3300031852 Bacteria 1489
113 Ga0307406_10038179 3300031901 Bacteria 2971
114 Ga0307416_100033436 3300032002 Bacteria 3898
115 Ga0307414_10000362 3300032004 Bacteria 25007
116 Ga0307414_10061717 3300032004 Bacteria 2656
117 Ga0307414_10121070 3300032004 Bacteria 2012
118 Ga0307414_10194146 3300032004 Bacteria 1645
119 Ga0307411_10079871 3300032005 Bacteria 2247
120 Ga0307411_10091175 3300032005 Bacteria 2128
121 Ga0307411_10122666 3300032005 Bacteria 1883
122 Ga0307415_100007965 3300032126 Bacteria 5837
123 Ga0307415_100085742 3300032126 Bacteria 2264
124 Ga0307510_10004800 3300033180 Bacteria 15995
125 Ga0436365_0164740 3300039437 Bacteria 1795
126 Ga0436365_0240280 3300039437 Bacteria 2347
127 Ga0439439_0048483 3300041406 Bacteria 1111
128 Ga0439453_0002709 3300041408 Bacteria 2471
129 Ga0439461_0008331 3300041410 Bacteria 1854
130 Ga0450923_000771 3300042125 Bacteria 3835
131 Ga0450923_011850 3300042125 Bacteria 1577
132 Ga0450896_001158 3300042133 Bacteria 3147
133 Ga0450910_004463 3300042147 Bacteria 1890
134 Ga0439446_0000023 3300042156 Bacteria 27788
135 Ga0450908_000348 3300042184 Bacteria 8971
136 Ga0439434_0008914 3300042435 Bacteria 2947
137 Ga0439435_0001957 3300042436 Bacteria 3965
138 Ga0439444_0002805 3300042437 Bacteria 2415
139 Ga0439460_0009700 3300042461 Bacteria 2450
140 Ga0495638_0006452 3300046460 Bacteria 8533
141 Ga0495638_0237386 3300046460 Bacteria 1011
142 Ga0495585_0172444 3300046492 Bacteria 1117
143 Ga0495596_0000430 3300046500 Bacteria 26887
144 Ga0495607_0025675 3300046501 Bacteria 3662
145 Ga0495583_0009903 3300046506 Bacteria 5637
146 Ga0495606_0060091 3300046507 Bacteria 2436
147 Ga0495610_0001676 3300046512 Bacteria 19476
148 Ga0495632_0004387 3300046519 Bacteria 9593
149 Ga0495643_0000007 3300046522 Bacteria 383435
150 Ga0495643_0002456 3300046522 Bacteria 14664
151 Ga0495643_0008788 3300046522 Bacteria 6364
152 Ga0495643_0020689 3300046522 Bacteria 3789
153 Ga0495643_0024579 3300046522 Bacteria 3416
154 Ga0495609_0002808 3300046538 Bacteria 10464
155 Ga0495668_0087507 3300046616 Bacteria 1708
156 Ga0495625_0012796 3300046660 Bacteria 6783
157 Ga0495625_0064561 3300046660 Bacteria 2582
158 Ga0495686_0019892 3300047472 Bacteria 4481
159 Ga0496103_0033095 3300048906 Bacteria 3158
160 Ga0496115_0006093 3300048918 Bacteria 8809
161 Ga0496121_0000070 3300048924 Bacteria 249187
162 Ga0496121_0000296 3300048924 Bacteria 103215
163 Ga0496121_0013581 3300048924 Bacteria 8733
164 Ga0496122_0000934 3300048925 Bacteria 53129
165 Ga0496123_0000740 3300048926 Bacteria 52939
166 Ga0496123_0116018 3300048926 Bacteria 1518
167 Ga0496126_0076681 3300048929 Bacteria 2965
168 Ga0496126_0224278 3300048929 Bacteria 1577
169 Ga0501031_0004554 3300049568 Bacteria 8991
170 Ga0501032_0027721 3300049569 Bacteria 3893
171 Ga0501033_0012274 3300049570 Bacteria 6538
172 Ga0501036_0006211 3300049572 Bacteria 9690
173 Ga0501038_0061165 3300049574 Bacteria 3222
174 Ga0501040_0006399 3300049576 Bacteria 7648
175 Ga0501041_0017912 3300049577 Bacteria 4215
176 Ga0501041_0128136 3300049577 Bacteria 1581
177 Ga0501042_0007040 3300049578 Bacteria 7345
178 Ga0501042_0234076 3300049578 Bacteria 1325
179 Ga0501048_0009673 3300049582 Bacteria 7234
180 Ga0501067_0015402 3300049583 Bacteria 4233
181 Ga0501068_0147219 3300049584 Bacteria 1478
182 Ga0501071_0184453 3300049587 Bacteria 1564
183 Ga0501072_0001990 3300049588 Bacteria 15222
184 Ga0501073_0002663 3300049589 Bacteria 13371
185 Ga0501073_0053979 3300049589 Bacteria 2814
186 Ga0501074_0108945 3300049590 Bacteria 1982
187 Ga0501075_0001728 3300049591 Bacteria 14345
188 Ga0501075_0109647 3300049591 Bacteria 2099
189 Ga0501076_0002162 3300049592 Bacteria 13478
190 Ga0501077_0002112 3300049593 Bacteria 11986
191 Ga0501080_0003236 3300049742 Bacteria 14370
192 Ga0501080_0048426 3300049742 Bacteria 3956
193 Ga0501080_0404962 3300049742 Bacteria 1227
194 Ga0501081_0006344 3300049743 Bacteria 7667
195 Ga0501081_0025720 3300049743 Bacteria 3963
196 Ga0501035_0005386 3300049822 Bacteria 12102
197 Ga0501035_0032160 3300049822 Bacteria 4775
198 Ga0501044_0128975 3300049823 Bacteria 2524
199 Ga0501044_0332361 3300049823 Bacteria 1442
200 Ga0501045_0003941 3300049824 Bacteria 10225
201 nmdc:mga00v17_208759_c1 3300050491 Bacteria 1263
202 nmdc:mga08y16_234328_c1 3300050511 Bacteria 1898
203 nmdc:mga08y16_38213_c1 3300050511 Bacteria 5042
204 nmdc:mga0n895_445_c1 3300050512 Bacteria 27685
205 nmdc:mga0rr50_13992_c1 3300050513 Bacteria 5245
206 Ga0500643_001256 3300053087 Bacteria 15014
207 Ga0500595_001328 3300053119 Bacteria 13404
208 Ga0500607_000443 3300053121 Bacteria 39768
209 Ga0500658_0027374 3300053134 Bacteria 2204
210 Ga0500559_0000897 3300053136 Bacteria 18990
211 Ga0500559_0007443 3300053136 Bacteria 4851
212 Ga0500559_0007978 3300053136 Bacteria 4664
213 Ga0500559_0015053 3300053136 Bacteria 3270
214 Ga0500559_0023958 3300053136 Bacteria 2593
215 Ga0500568_0026358 3300053139 Bacteria 2441
216 Ga0500590_000657 3300053148 Bacteria 12371
217 Ga0500616_0119114 3300053153 Bacteria 1264
218 Ga0500637_0009836 3300053178 Bacteria 4888
219 Ga0500645_004816 3300053730 Bacteria 5096
220 Ga0500661_000824 3300055283 Bacteria 5776
221 Ga0530510_0252953 3300061734 Bacteria 1313

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300005841 Ga0068863_100017898 Ga0068863_1000178983 264
2 3300026088 Ga0207641_10009520 Ga0207641_100095202 264
3 3300041410 Ga0439461_0008331 Ga0439461_0008331_981_1838 278
4 3300005438 Ga0070701_10235680 Ga0070701_102356801 281
5 3300005617 Ga0068859_100000004 Ga0068859_100000004123 281
6 3300006931 Ga0097620_100000004 Ga0097620_100000004123 281
7 3300025986 Ga0207658_10020730 Ga0207658_100207304 284
8 3300005355 Ga0070671_100037099 Ga0070671_1000370992 286
9 3300005367 Ga0070667_100000678 Ga0070667_1000006786 286
10 3300002774 JGI25150J39212_1000046 JGI25150J39212_100004689 294
11 3300003187 JGI25151J46595_10029646 JGI25151J46595_100296461 294
12 3300003215 JGI25153J46596_10000099 JGI25153J46596_1000009938 294
13 3300003771 Ga0055526_1011158 Ga0055526_10111582 295
14 3300003781 Ga0055536_1015011 Ga0055536_10150113 295
15 3300003791 Ga0055530_10021725 Ga0055530_100217253 295
16 3300003791 Ga0055530_10029393 Ga0055530_100293933 295
17 3300003792 Ga0055540_1001420 Ga0055540_100142013 295
18 3300014326 Ga0157380_10041075 Ga0157380_100410752 295
19 3300025298 Ga0209050_1000585 Ga0209050_100058518 295
20 3300025303 Ga0209051_1000251 Ga0209051_100025111 295
21 3300005548 Ga0070665_100000038 Ga0070665_100000038183 298
22 3300028379 Ga0268266_10000118 Ga0268266_1000011862 298
23 3300046522 Ga0495643_0000007 Ga0495643_0000007_54168_55139 298
24 3300009174 Ga0105241_10156066 Ga0105241_101560662 299
25 3300053136 Ga0500559_0023958 Ga0500559_0023958_777_1715 299
26 3300005366 Ga0070659_100010537 Ga0070659_1000105374 300
27 3300009177 Ga0105248_10009070 Ga0105248_100090705 300
28 3300014968 Ga0157379_10046263 Ga0157379_100462632 300
29 3300025932 Ga0207690_10035378 Ga0207690_100353782 300
30 3300046492 Ga0495585_0172444 Ga0495585_0172444_73_1011 300
31 3300031824 Ga0307413_10029573 Ga0307413_100295734 301
32 3300032005 Ga0307411_10079871 Ga0307411_100798712 301
33 3300032126 Ga0307415_100085742 Ga0307415_1000857422 301
34 3300046512 Ga0495610_0001676 Ga0495610_0001676_18131_19102 302
35 3300031665 Ga0316575_10061145 Ga0316575_100611452 303
36 3300005347 Ga0070668_100026661 Ga0070668_1000266612 304
37 3300005844 Ga0068862_100062001 Ga0068862_1000620014 304
38 3300025972 Ga0207668_10016872 Ga0207668_100168722 304
39 3300048929 Ga0496126_0224278 Ga0496126_0224278_396_1385 304
40 3300053136 Ga0500559_0015053 Ga0500559_0015053_2148_3086 304
41 3300046460 Ga0495638_0237386 Ga0495638_0237386_30_947 305
42 3300005549 Ga0070704_100253879 Ga0070704_1002538791 306
43 3300005578 Ga0068854_100002051 Ga0068854_1000020517 306
44 3300025981 Ga0207640_10003032 Ga0207640_100030327 306
45 3300031852 Ga0307410_10210542 Ga0307410_102105422 306
46 3300009147 Ga0114129_10299487 Ga0114129_102994872 307
47 iso_pu_bacteria 2643221588 2643949562 307
48 3300049742 Ga0501080_0404962 Ga0501080_0404962_196_1191 309
49 3300039437 Ga0436365_0240280 Ga0436365_0240280_847_1812 310
50 3300046522 Ga0495643_0002456 Ga0495643_0002456_12060_13037 310
51 3300048924 Ga0496121_0000296 Ga0496121_0000296_8602_9579 310
52 3300050511 nmdc:mga08y16_234328_c1 nmdc:mga08y16_234328_c1_338_1306 310
53 3300046460 Ga0495638_0006452 Ga0495638_0006452_1819_2754 311
54 3300047472 Ga0495686_0019892 Ga0495686_0019892_1461_2396 311
55 3300048918 Ga0496115_0006093 Ga0496115_0006093_5776_6711 311
56 3300049570 Ga0501033_0012274 Ga0501033_0012274_1791_2759 311
57 3300049822 Ga0501035_0032160 Ga0501035_0032160_3038_4006 311
58 3300049823 Ga0501044_0128975 Ga0501044_0128975_765_1733 311
59 3300053119 Ga0500595_001328 Ga0500595_001328_1450_2385 311
60 3300053134 Ga0500658_0027374 Ga0500658_0027374_468_1403 311
61 3300053139 Ga0500568_0026358 Ga0500568_0026358_575_1510 311
62 3300053153 Ga0500616_0119114 Ga0500616_0119114_154_1089 311
63 3300005843 Ga0068860_100155697 Ga0068860_1001556973 312
64 3300005842 Ga0068858_100026458 Ga0068858_1000264582 313
65 3300026035 Ga0207703_10002076 Ga0207703_100020765 313
66 3300026088 Ga0207641_10023961 Ga0207641_100239616 313
67 3300028381 Ga0268264_10025272 Ga0268264_100252723 313
68 iso_pu_bacteria 2830075706 2830076459 313
69 3300005354 Ga0070675_100028352 Ga0070675_1000283527 314
70 3300005356 Ga0070674_100076498 Ga0070674_1000764983 314
71 3300006844 Ga0075428_100021494 Ga0075428_1000214947 314
72 3300006852 Ga0075433_10000885 Ga0075433_1000088515 314
73 3300006871 Ga0075434_100000099 Ga0075434_1000000999 314
74 3300006881 Ga0068865_100103746 Ga0068865_1001037462 314
75 3300007076 Ga0075435_100064282 Ga0075435_1000642824 314
76 3300009094 Ga0111539_10099544 Ga0111539_100995445 314
77 3300009094 Ga0111539_10165582 Ga0111539_101655824 314
78 3300009987 Ga0105030_102456 Ga0105030_1024562 314
79 3300014326 Ga0157380_10036187 Ga0157380_100361872 314
80 3300014745 Ga0157377_10145603 Ga0157377_101456032 314
81 3300025923 Ga0207681_10084253 Ga0207681_100842532 314
82 3300025923 Ga0207681_10255131 Ga0207681_102551312 314
83 3300025926 Ga0207659_10213316 Ga0207659_102133162 314
84 3300025937 Ga0207669_10178185 Ga0207669_101781851 314
85 3300027907 Ga0207428_10060170 Ga0207428_100601703 314
86 3300027907 Ga0207428_10279200 Ga0207428_102792001 314
87 3300031548 Ga0307408_100022460 Ga0307408_1000224605 314
88 3300031731 Ga0307405_10002158 Ga0307405_100021585 314
89 3300031852 Ga0307410_10027502 Ga0307410_100275023 314
90 3300031901 Ga0307406_10038179 Ga0307406_100381792 314
91 3300032002 Ga0307416_100033436 Ga0307416_1000334362 314
92 3300032004 Ga0307414_10061717 Ga0307414_100617173 314
93 3300032005 Ga0307411_10091175 Ga0307411_100911751 314
94 3300032005 Ga0307411_10122666 Ga0307411_101226662 314
95 3300032126 Ga0307415_100007965 Ga0307415_1000079652 314
96 3300041406 Ga0439439_0048483 Ga0439439_0048483_33_1028 314
97 3300041408 Ga0439453_0002709 Ga0439453_0002709_683_1678 314
98 3300042125 Ga0450923_000771 Ga0450923_000771_143_1138 314
99 3300042125 Ga0450923_011850 Ga0450923_011850_206_1201 314
100 3300042133 Ga0450896_001158 Ga0450896_001158_720_1715 314
101 3300042147 Ga0450910_004463 Ga0450910_004463_433_1428 314
102 3300042156 Ga0439446_0000023 Ga0439446_0000023_8639_9634 314
103 3300042184 Ga0450908_000348 Ga0450908_000348_161_1156 314
104 3300042435 Ga0439434_0008914 Ga0439434_0008914_233_1228 314
105 3300042436 Ga0439435_0001957 Ga0439435_0001957_532_1527 314
106 3300042437 Ga0439444_0002805 Ga0439444_0002805_1001_1996 314
107 3300042461 Ga0439460_0009700 Ga0439460_0009700_1266_2261 314
108 3300049568 Ga0501031_0004554 Ga0501031_0004554_129_1124 314
109 3300049569 Ga0501032_0027721 Ga0501032_0027721_2353_3348 314
110 3300049572 Ga0501036_0006211 Ga0501036_0006211_4241_5236 314
111 3300049574 Ga0501038_0061165 Ga0501038_0061165_702_1697 314
112 3300049576 Ga0501040_0006399 Ga0501040_0006399_3142_4137 314
113 3300049577 Ga0501041_0017912 Ga0501041_0017912_17_1012 314
114 3300049577 Ga0501041_0128136 Ga0501041_0128136_144_1139 314
115 3300049578 Ga0501042_0007040 Ga0501042_0007040_1545_2540 314
116 3300049582 Ga0501048_0009673 Ga0501048_0009673_262_1257 314
117 3300049583 Ga0501067_0015402 Ga0501067_0015402_2469_3464 314
118 3300049584 Ga0501068_0147219 Ga0501068_0147219_313_1308 314
119 3300049587 Ga0501071_0184453 Ga0501071_0184453_527_1522 314
120 3300049588 Ga0501072_0001990 Ga0501072_0001990_1034_2029 314
121 3300049589 Ga0501073_0002663 Ga0501073_0002663_3443_4438 314
122 3300049589 Ga0501073_0053979 Ga0501073_0053979_1080_2075 314
123 3300049590 Ga0501074_0108945 Ga0501074_0108945_758_1753 314
124 3300049591 Ga0501075_0001728 Ga0501075_0001728_4206_5201 314
125 3300049591 Ga0501075_0109647 Ga0501075_0109647_270_1265 314
126 3300049592 Ga0501076_0002162 Ga0501076_0002162_10949_11944 314
127 3300049593 Ga0501077_0002112 Ga0501077_0002112_8561_9556 314
128 3300049742 Ga0501080_0003236 Ga0501080_0003236_11259_12254 314
129 3300049742 Ga0501080_0048426 Ga0501080_0048426_2416_3411 314
130 3300049743 Ga0501081_0006344 Ga0501081_0006344_3865_4860 314
131 3300049743 Ga0501081_0025720 Ga0501081_0025720_2957_3952 314
132 3300049822 Ga0501035_0005386 Ga0501035_0005386_8082_9077 314
133 3300049823 Ga0501044_0332361 Ga0501044_0332361_247_1242 314
134 3300049824 Ga0501045_0003941 Ga0501045_0003941_4506_5501 314
135 3300050511 nmdc:mga08y16_38213_c1 nmdc:mga08y16_38213_c1_824_1819 314
136 3300050512 nmdc:mga0n895_445_c1 nmdc:mga0n895_445_c1_18163_19158 314
137 3300050513 nmdc:mga0rr50_13992_c1 nmdc:mga0rr50_13992_c1_3204_4199 314
138 3300053121 Ga0500607_000443 Ga0500607_000443_33310_34257 314
139 3300053136 Ga0500559_0000897 Ga0500559_0000897_2908_3855 314
140 3300053136 Ga0500559_0007443 Ga0500559_0007443_3584_4531 314
141 3300053178 Ga0500637_0009836 Ga0500637_0009836_836_1783 314
142 3300053730 Ga0500645_004816 Ga0500645_004816_558_1505 314
143 3300061734 Ga0530510_0252953 Ga0530510_0252953_197_1192 314
144 3300005331 Ga0070670_100128777 Ga0070670_1001287772 315
145 3300025925 Ga0207650_10215382 Ga0207650_102153822 315
146 3300048925 Ga0496122_0000934 Ga0496122_0000934_36252_37235 315
147 3300048926 Ga0496123_0000740 Ga0496123_0000740_15793_16776 315
148 iso_pu_bacteria 2882806704 2882807524 315
149 iso_pu_bacteria 2895880812 2895886007 315
150 3300049578 Ga0501042_0234076 Ga0501042_0234076_112_1065 316
151 3300025914 Ga0207671_10002043 Ga0207671_1000204321 317
152 3300031824 Ga0307413_10070324 Ga0307413_100703242 317
153 3300032004 Ga0307414_10194146 Ga0307414_101941463 317
154 3300005295 Ga0065707_10093355 Ga0065707_100933553 318
155 3300048924 Ga0496121_0000070 Ga0496121_0000070_195433_196389 318
156 iso_pu_bacteria 2885429604 2885429937 318
157 iso_pu_bacteria 2990265787 2990266052 318
158 iso_pu_bacteria 2993693658 2993696155 318
159 3300025245 Ga0207425_1000020 Ga0207425_1000020261 319
160 3300025258 Ga0209129_1000706 Ga0209129_100070618 319
161 3300025294 Ga0209025_1000366 Ga0209025_100036652 319
162 3300025297 Ga0209758_1000004 Ga0209758_1000004525 319
163 3300032004 Ga0307414_10000362 Ga0307414_100003624 319
164 3300039437 Ga0436365_0164740 Ga0436365_0164740_134_1093 319
165 3300046522 Ga0495643_0024579 Ga0495643_0024579_2284_3246 319
166 iso_pu_bacteria 2510917021 2511127174 319
167 iso_pu_bacteria 2848297114 2848299962 319
168 iso_pu_bacteria 2896253425 2896254976 319
169 3300005843 Ga0068860_100005064 Ga0068860_1000050644 320
170 3300005844 Ga0068862_100000179 Ga0068862_10000017954 320
171 3300025263 Ga0209565_1000151 Ga0209565_100015146 320
172 3300025273 Ga0209673_1010336 Ga0209673_10103361 320
173 3300025961 Ga0207712_10000008 Ga0207712_10000008182 320
174 3300028380 Ga0268265_10000199 Ga0268265_1000019953 320
175 3300028381 Ga0268264_10000936 Ga0268264_1000093631 320
176 3300005530 Ga0070679_100256894 Ga0070679_1002568941 321
177 3300005548 Ga0070665_100199634 Ga0070665_1001996343 321
178 3300005618 Ga0068864_100024249 Ga0068864_1000242494 321
179 3300005842 Ga0068858_100002855 Ga0068858_10000285515 321
180 3300009177 Ga0105248_10005723 Ga0105248_100057234 321
181 3300009553 Ga0105249_10000004 Ga0105249_1000000452 321
182 3300009553 Ga0105249_10055354 Ga0105249_100553542 321
183 3300013306 Ga0163162_10020509 Ga0163162_100205093 321
184 3300025941 Ga0207711_10026316 Ga0207711_100263164 321
185 3300026035 Ga0207703_10001489 Ga0207703_100014899 321
186 3300028794 Ga0307515_10304567 Ga0307515_103045671 321
187 3300031456 Ga0307513_10057153 Ga0307513_100571534 321
188 3300031616 Ga0307508_10025727 Ga0307508_100257275 321
189 3300032004 Ga0307414_10121070 Ga0307414_101210701 321
190 3300033180 Ga0307510_10004800 Ga0307510_100048005 321
191 3300046506 Ga0495583_0009903 Ga0495583_0009903_1806_2813 321
192 3300046616 Ga0495668_0087507 Ga0495668_0087507_249_1256 321
193 3300046660 Ga0495625_0064561 Ga0495625_0064561_1160_2167 321
194 3300050491 nmdc:mga00v17_208759_c1 nmdc:mga00v17_208759_c1_195_1169 321
195 3300053087 Ga0500643_001256 Ga0500643_001256_1624_2631 321
196 3300053136 Ga0500559_0007978 Ga0500559_0007978_3268_4272 321
197 3300055283 Ga0500661_000824 Ga0500661_000824_4045_5049 321
198 2162886007 SwRhRL2b_contig_2402994 SwRhRL2b_0577.00001590 322
199 2162886007 SwRhRL2b_contig_2586087 SwRhRL2b_0310.00004390 322
200 3300005289 Ga0065704_10000191 Ga0065704_10000191233 322
201 3300005347 Ga0070668_100007155 Ga0070668_1000071555 322
202 3300005353 Ga0070669_100000990 Ga0070669_10000099019 322
203 3300005548 Ga0070665_100000558 Ga0070665_10000055850 322
204 3300005841 Ga0068863_100004204 Ga0068863_10000420412 322
205 3300005844 Ga0068862_100011970 Ga0068862_1000119706 322
206 3300009011 Ga0105251_10002779 Ga0105251_100027798 322
207 3300009101 Ga0105247_10106231 Ga0105247_101062312 322
208 3300013297 Ga0157378_10020962 Ga0157378_100209623 322
209 3300025735 Ga0207713_1009744 Ga0207713_10097446 322
210 3300025923 Ga0207681_10002809 Ga0207681_100028096 322
211 3300025925 Ga0207650_10060888 Ga0207650_100608882 322
212 3300025931 Ga0207644_10004801 Ga0207644_100048017 322
213 3300025941 Ga0207711_10015561 Ga0207711_100155616 322
214 3300025972 Ga0207668_10011407 Ga0207668_100114074 322
215 3300025986 Ga0207658_10070267 Ga0207658_100702672 322
216 3300026088 Ga0207641_10005158 Ga0207641_100051583 322
217 3300028379 Ga0268266_10001483 Ga0268266_100014831 322
218 3300028380 Ga0268265_10034305 Ga0268265_100343055 322
219 3300046500 Ga0495596_0000430 Ga0495596_0000430_3124_4095 322
220 3300046501 Ga0495607_0025675 Ga0495607_0025675_712_1683 322
221 3300046507 Ga0495606_0060091 Ga0495606_0060091_1119_2090 322
222 3300046519 Ga0495632_0004387 Ga0495632_0004387_4542_5513 322
223 3300046522 Ga0495643_0008788 Ga0495643_0008788_3820_4791 322
224 3300046522 Ga0495643_0020689 Ga0495643_0020689_2430_3401 322
225 3300046538 Ga0495609_0002808 Ga0495609_0002808_2558_3529 322
226 3300046660 Ga0495625_0012796 Ga0495625_0012796_245_1216 322
227 3300048906 Ga0496103_0033095 Ga0496103_0033095_1278_2255 322
228 3300048924 Ga0496121_0013581 Ga0496121_0013581_7604_8581 322
229 3300048926 Ga0496123_0116018 Ga0496123_0116018_83_1060 322
230 3300048929 Ga0496126_0076681 Ga0496126_0076681_1174_2151 322
231 3300053148 Ga0500590_000657 Ga0500590_000657_8804_9778 322

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00291

PALP

Pyridoxal-phosphate dependent enzyme

48

335

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
2zpu-assembly1.cif.gz_A crystal structure of modified serine racemase from s.pombe. 0.9307 4 320
1ve5-assembly1.cif.gz_B crystal structure of t.th. hb8 threonine deaminase 0.923 6 310
2zpu-assembly1.cif.gz_A crystal structure of modified serine racemase from s.pombe. 0.9222 4 320
5cvc-assembly1.cif.gz_A structure of maize serine racemase 0.9206 4 316
2gn2-assembly1.cif.gz_A crystal structure of tetrameric biodegradative threonine deaminase (tdcb) from salmonella typhimurium in complex with cmp at 2.5a resolution (hexagonal form) 0.9138 1 322
ID Description Score Start End Superfamily
af_P36007_52_148_3.40.50.1100 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9864 51 147 3.40.50.1100
af_P36007_52_148_3.40.50.1100 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9665 51 147 3.40.50.1100
af_Q9VHF0_106_202_3.40.50.1100 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9449 51 147 3.40.50.1100
5cvcC02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9372 51 145 3.40.50.1100
2gn1B02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9337 52 147 3.40.50.1100
ID Description Score Start End GO Terms
AF-A0A0A1W3P2-F1-model_v4 Putative L-threo-3-hydroxy aspartate dehydratase 0.9799 39 320 GO:0003941
GO:0004794
GO:0006565
GO:0006567
GO:0009097
GO:0030170
AF-A0A439LGR4-F1-model_v4 Pyridoxal-phosphate dependent enzyme 0.9796 40 120 GO:0003941
GO:0004794
GO:0006565
GO:0006567
GO:0009097
GO:0030170
AF-A0A520JGV6-F1-model_v4 Pyridoxal-phosphate dependent enzyme 0.9736 1 135 GO:0000287
GO:0003941
GO:0005524
GO:0018114
GO:0030170
GO:0030378
GO:0070179
AF-A0A0A1W3P2-F1-model_v4 Putative L-threo-3-hydroxy aspartate dehydratase 0.9697 39 320 GO:0003941
GO:0004794
GO:0006565
GO:0006567
GO:0009097
GO:0030170
AF-A0A7D9LY05-F1-model_v4 deleted 0.9635 11 121

Feature Viewer

pLDDT pTM Quality
94.18 0.92 High
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Predicted Structure (AlphaFold2)

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