F344152

General Info

Members Datasets Scaffolds Average Seq Length
231 152 462 178

Family's Representative Sequence

Representative Sequence 3300026095|Ga0207676_10896552|Ga0207676_108965522
Length 199
Sequence MIHGRNQHRSSVMDALPRRSTDVTSTLTLPLTATRSHPVLDFDTLYRAARDDVYAYVATLLGDRSAAEDVTASAFERAFLKQGTYKPARGTERAWLFGIARNAALDELRRRKRSAALTAEPADDAPAPEDAADTALRRAALRAALAGLAPRERELIALKFHAGLDNAELATVLGVSVSNAGTMLHRAVTKLRKAIDEHA

Samples

Sample ID Description Type Environment
1 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
8 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
9 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
10 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
16 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
17 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
18 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
19 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
20 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
21 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
22 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
23 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
24 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
27 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
28 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
29 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
30 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
31 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
32 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
33 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
34 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
35 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
36 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
37 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
38 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
39 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
40 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
45 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
46 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
47 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
48 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
49 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
50 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
51 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
52 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
53 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
54 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
55 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
82 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
83 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
84 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
85 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
86 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
87 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
88 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
89 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
90 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
91 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
92 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
93 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
94 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
95 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
96 3300042530 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530L_E14_082316_2047 Metagenome Rhizosphere
97 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
98 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
99 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
100 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
101 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
102 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
103 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
104 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
105 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
106 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
107 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
108 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
109 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
110 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
111 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
112 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
113 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
114 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
115 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
116 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
117 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
118 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
119 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
120 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
122 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
128 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
129 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
130 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
131 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
132 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
133 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
134 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
135 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
136 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
137 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
138 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
139 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
140 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
141 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
142 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
143 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
144 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
145 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
146 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
147 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
148 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
149 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
150 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
151 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
152 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.3
Nodule 0
Rhizoplane 4.76
Rhizosphere 91.77
Stem 0
Stem Tuber 0
Unclassified 8.23

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207676_10896552 3300026095 Bacteria 870
2 JGI25406J46586_10028850 3300003203 Bacteria 2108
3 Ga0070683_100036882 3300005329 Bacteria 4473
4 Ga0070683_100124057 3300005329 Bacteria 2441
5 Ga0070683_100620689 3300005329 Bacteria 1035
6 Ga0070690_100054161 3300005330 Bacteria 2568
7 Ga0070670_100851154 3300005331 Bacteria 825
8 Ga0070660_100116469 3300005339 Bacteria 2131
9 Ga0070691_10015172 3300005341 Bacteria 3539
10 Ga0070687_100937702 3300005343 Bacteria 623
11 Ga0070661_100776236 3300005344 Bacteria 785
12 Ga0070661_101275126 3300005344 Bacteria 616
13 Ga0070692_10250743 3300005345 Bacteria 1060
14 Ga0070668_100265015 3300005347 Bacteria 1430
15 Ga0070669_100041084 3300005353 Bacteria 3363
16 Ga0070675_100279393 3300005354 Bacteria 1467
17 Ga0070674_100029999 3300005356 Bacteria 3590
18 Ga0070674_100250453 3300005356 Bacteria 1391
19 Ga0070674_100388775 3300005356 Bacteria 1137
20 Ga0070659_100000002 3300005366 Bacteria 369239
21 Ga0070659_100251515 3300005366 Bacteria 1465
22 Ga0070714_100046494 3300005435 Bacteria 3683
23 Ga0070705_100448992 3300005440 Bacteria 967
24 Ga0070700_100155175 3300005441 Bacteria 1570
25 Ga0070700_100314707 3300005441 Bacteria 1148
26 Ga0070694_100343422 3300005444 Bacteria 1155
27 Ga0070662_100502044 3300005457 Bacteria 1012
28 Ga0068867_100502933 3300005459 Bacteria 1042
29 Ga0070699_100156989 3300005518 Unclassified 2013
30 Ga0070672_100000258 3300005543 Bacteria 30020
31 Ga0070672_100908276 3300005543 Bacteria 778
32 Ga0070665_100115252 3300005548 Bacteria 2690
33 Ga0070664_100035466 3300005564 Bacteria 4188
34 Ga0070664_100357259 3300005564 Bacteria 1330
35 Ga0070702_100215394 3300005615 Bacteria 1281
36 Ga0068861_100094853 3300005719 Bacteria 2362
37 Ga0068861_100374726 3300005719 Bacteria 1256
38 Ga0068870_10141998 3300005840 Bacteria 1406
39 Ga0081455_10203315 3300005937 Bacteria 1481
40 Ga0081455_10318122 3300005937 Bacteria 1110
41 Ga0081538_10000034 3300005981 Bacteria 120557
42 Ga0081538_10012809 3300005981 Bacteria 6695
43 Ga0081538_10049156 3300005981 Bacteria 2561
44 Ga0081538_10086359 3300005981 Bacteria 1643
45 Ga0081538_10090658 3300005981 Bacteria 1582
46 Ga0081539_10001052 3300005985 Bacteria 50554
47 Ga0081539_10009796 3300005985 Bacteria 7922
48 Ga0081539_10122652 3300005985 Bacteria 1288
49 Ga0075365_10064561 3300006038 Bacteria 2453
50 Ga0075365_10148054 3300006038 Bacteria 1633
51 Ga0075432_10030873 3300006058 Bacteria 1854
52 Ga0075428_100039368 3300006844 Bacteria 5202
53 Ga0075428_101222454 3300006844 Bacteria 792
54 Ga0075430_100108193 3300006846 Bacteria 2319
55 Ga0075430_100421297 3300006846 Bacteria 1102
56 Ga0075431_100022151 3300006847 Bacteria 6497
57 Ga0075431_100360325 3300006847 Bacteria 1461
58 Ga0075434_100039937 3300006871 Bacteria 4648
59 Ga0075429_100009659 3300006880 Bacteria 8366
60 Ga0068865_100242859 3300006881 Bacteria 1418
61 Ga0068865_100749233 3300006881 Bacteria 839
62 Ga0075436_100321206 3300006914 Bacteria 1112
63 Ga0111539_10122009 3300009094 Bacteria 3054
64 Ga0111539_10156505 3300009094 Bacteria 2667
65 Ga0111539_10415019 3300009094 Bacteria 1568
66 Ga0111539_10530663 3300009094 Unclassified 1371
67 Ga0111539_10548439 3300009094 Unclassified 1347
68 Ga0105245_11351354 3300009098 Bacteria 762
69 Ga0114129_10003293 3300009147 Bacteria 22682
70 Ga0114129_10126477 3300009147 Bacteria 3514
71 Ga0105243_10080840 3300009148 Bacteria 2652
72 Ga0105238_11114733 3300009551 Bacteria 812
73 Ga0105249_11897312 3300009553 Bacteria 668
74 Ga0163162_11508461 3300013306 Bacteria 766
75 Ga0157375_11629932 3300013308 Bacteria 763
76 Ga0157380_10320283 3300014326 Bacteria 1437
77 Ga0157377_10231588 3300014745 Bacteria 1188
78 Ga0157379_10398746 3300014968 Bacteria 1264
79 Ga0157376_10036816 3300014969 Bacteria 3966
80 Ga0163161_10604592 3300017792 Bacteria 904
81 Ga0213876_10117847 3300021384 Bacteria 1409
82 Ga0207642_10401496 3300025899 Bacteria 820
83 Ga0207688_10251152 3300025901 Bacteria 1071
84 Ga0207643_10079630 3300025908 Bacteria 1897
85 Ga0207693_10114457 3300025915 Bacteria 2117
86 Ga0207662_10187771 3300025918 Bacteria 1332
87 Ga0207657_10033881 3300025919 Bacteria 4599
88 Ga0207652_11434358 3300025921 Bacteria 594
89 Ga0207646_10175994 3300025922 Bacteria 1933
90 Ga0207681_10005673 3300025923 Bacteria 7663
91 Ga0207659_10453712 3300025926 Bacteria 1080
92 Ga0207664_10012741 3300025929 Bacteria 6019
93 Ga0207690_10000084 3300025932 Bacteria 78461
94 Ga0207706_10530636 3300025933 Bacteria 1014
95 Ga0207669_10273017 3300025937 Bacteria 1271
96 Ga0207669_10582790 3300025937 Bacteria 907
97 Ga0207704_10164380 3300025938 Bacteria 1583
98 Ga0207691_10000871 3300025940 Bacteria 30024
99 Ga0207691_10107168 3300025940 Bacteria 2488
100 Ga0207691_10939245 3300025940 Bacteria 723
101 Ga0207661_10055731 3300025944 Bacteria 3172
102 Ga0207661_10307691 3300025944 Bacteria 1422
103 Ga0207712_10390556 3300025961 Bacteria 1167
104 Ga0207668_10540900 3300025972 Bacteria 1008
105 Ga0207708_10006634 3300026075 Bacteria 8567
106 Ga0207708_10152399 3300026075 Bacteria 1821
107 Ga0207708_10243345 3300026075 Bacteria 1447
108 Ga0207641_11802417 3300026088 Bacteria 614
109 Ga0207648_10085638 3300026089 Bacteria 2749
110 Ga0207648_10703262 3300026089 Bacteria 937
111 Ga0207648_10852916 3300026089 Bacteria 850
112 Ga0207674_10406516 3300026116 Bacteria 1316
113 Ga0207675_100026183 3300026118 Bacteria 5429
114 Ga0268266_10526639 3300028379 Bacteria 1130
115 Ga0268265_11793027 3300028380 Bacteria 620
116 Ga0307405_10094249 3300031731 Unclassified 1991
117 Ga0307405_10108921 3300031731 Bacteria 1873
118 Ga0307413_10006469 3300031824 Bacteria 5355
119 Ga0307413_10186229 3300031824 Bacteria 1486
120 Ga0307413_10444566 3300031824 Bacteria 1027
121 Ga0307413_11025636 3300031824 Bacteria 709
122 Ga0307410_10202560 3300031852 Bacteria 1516
123 Ga0307410_10886191 3300031852 Bacteria 764
124 Ga0307406_10078218 3300031901 Bacteria 2190
125 Ga0307406_10126994 3300031901 Bacteria 1784
126 Ga0307406_10181874 3300031901 Bacteria 1531
127 Ga0307407_10033963 3300031903 Bacteria 2788
128 Ga0307412_10073948 3300031911 Bacteria 2334
129 Ga0307412_10247376 3300031911 Bacteria 1383
130 Ga0307409_100108254 3300031995 Bacteria 2324
131 Ga0307409_100286296 3300031995 Bacteria 1526
132 Ga0307409_100392131 3300031995 Unclassified 1323
133 Ga0307409_100522568 3300031995 Bacteria 1160
134 Ga0307416_100109606 3300032002 Bacteria 2429
135 Ga0307416_100123351 3300032002 Bacteria 2315
136 Ga0307416_100406004 3300032002 Unclassified 1401
137 Ga0307414_10053971 3300032004 Bacteria 2806
138 Ga0307411_10202025 3300032005 Unclassified 1527
139 Ga0307411_10655953 3300032005 Bacteria 909
140 Ga0395899_0413391 3300037312 Unclassified 890
141 Ga0436364_0457620 3300037853 Unclassified 1139
142 Ga0395901_0234219 3300038443 Bacteria 1916
143 Ga0436365_1118199 3300039437 Bacteria 6669
144 Ga0436365_1173649 3300039437 Bacteria 5469
145 Ga0439450_079059 3300042008 Bacteria 816
146 Ga0450916_001311 3300042530 Bacteria 2456
147 Ga0466972_0290599 3300044658 Bacteria 764
148 Ga0466966_0013788 3300044684 Bacteria 5348
149 Ga0466961_0007125 3300044693 Bacteria 7113
150 Ga0466961_0350916 3300044693 Bacteria 898
151 Ga0466963_0028789 3300044694 Bacteria 3571
152 Ga0466971_0007963 3300044719 Bacteria 4618
153 Ga0466970_0053288 3300044765 Unclassified 2160
154 Ga0466957_0040693 3300044842 Bacteria 2808
155 Ga0466957_0131335 3300044842 Bacteria 1605
156 Ga0466958_0013569 3300045836 Bacteria 4641
157 Ga0466958_0309918 3300045836 Bacteria 1014
158 Ga0466958_0500914 3300045836 Bacteria 788
159 Ga0466958_0679904 3300045836 Bacteria 670
160 Ga0466967_0006362 3300045976 Bacteria 8343
161 Ga0466967_0023431 3300045976 Bacteria 5058
162 Ga0466967_0074391 3300045976 Bacteria 3051
163 Ga0466967_1025688 3300045976 Bacteria 822
164 Ga0495638_0014600 3300046460 Bacteria 5302
165 Ga0495664_0597788 3300046477 Bacteria 656
166 Ga0495631_0181154 3300046518 Bacteria 903
167 Ga0495625_0000109 3300046660 Bacteria 125064
168 Ga0495676_0242679 3300047321 Bacteria 1233
169 Ga0496102_0000021 3300048905 Bacteria 246920
170 Ga0496102_0231536 3300048905 Bacteria 1742
171 Ga0496103_0000001 3300048906 Bacteria 643471
172 Ga0496107_0567745 3300048910 Bacteria 840
173 Ga0496109_0133541 3300048912 Bacteria 2318
174 Ga0496110_0008927 3300048913 Bacteria 8081
175 Ga0496111_0016171 3300048914 Bacteria 5139
176 Ga0496111_0170185 3300048914 Bacteria 1619
177 Ga0496113_0027841 3300048916 Bacteria 4057
178 Ga0496113_1086578 3300048916 Bacteria 628
179 Ga0496115_0734347 3300048918 Bacteria 773
180 Ga0496118_0129185 3300048921 Bacteria 1627
181 Ga0501031_0236058 3300049568 Bacteria 1189
182 Ga0501031_0355272 3300049568 Unclassified 948
183 Ga0501033_0523170 3300049570 Bacteria 819
184 Ga0501036_0904515 3300049572 Bacteria 724
185 Ga0501037_0666024 3300049573 Bacteria 695
186 Ga0501040_0039266 3300049576 Bacteria 3219
187 Ga0501041_0069754 3300049577 Bacteria 2157
188 Ga0501042_0009645 3300049578 Bacteria 6445
189 Ga0501042_0201204 3300049578 Bacteria 1436
190 Ga0501042_0622215 3300049578 Bacteria 785
191 Ga0501042_0741490 3300049578 Bacteria 714
192 Ga0501048_0292071 3300049582 Unclassified 1159
193 Ga0501048_0360507 3300049582 Bacteria 1037
194 Ga0501069_0358453 3300049585 Bacteria 860
195 Ga0501070_0365978 3300049586 Unclassified 1169
196 Ga0501070_0397670 3300049586 Unclassified 1115
197 Ga0501071_0190228 3300049587 Bacteria 1539
198 Ga0501071_0247878 3300049587 Bacteria 1344
199 Ga0501072_0020309 3300049588 Bacteria 5146
200 Ga0501074_0043442 3300049590 Bacteria 3253
201 Ga0501075_0083700 3300049591 Bacteria 2416
202 Ga0501076_0040135 3300049592 Bacteria 3677
203 Ga0501076_0086767 3300049592 Bacteria 2515
204 Ga0501077_0299580 3300049593 Unclassified 1024
205 Ga0501079_0345002 3300049741 Bacteria 1166
206 Ga0501079_1389639 3300049741 Bacteria 552
207 Ga0501081_0433548 3300049743 Bacteria 975
208 Ga0501081_0651752 3300049743 Bacteria 789
209 Ga0501045_0091155 3300049824 Bacteria 2253
210 Ga0501045_0600394 3300049824 Bacteria 815
211 nmdc:mga06z11_506581_c1 3300050494 Bacteria 731
212 nmdc:mga05p37_163237_c1 3300050507 Bacteria 2720
213 nmdc:mga09592_38167_c1 3300050508 Bacteria 4031
214 nmdc:mga09592_538086_c1 3300050508 Bacteria 1004
215 nmdc:mga0qj67_47502_c1 3300050509 Bacteria 3391
216 nmdc:mga0qj67_5499_c1 3300050509 Bacteria 9261
217 nmdc:mga0qj67_635587_c1 3300050509 Bacteria 852
218 nmdc:mga06r32_149879_c1 3300050510 Bacteria 2310
219 nmdc:mga06r32_48409_c1 3300050510 Bacteria 4063
220 nmdc:mga08y16_110005_c1 3300050511 Bacteria 2869
221 nmdc:mga08y16_35698_c1 3300050511 Bacteria 5221
222 nmdc:mga08y16_723760_c1 3300050511 Unclassified 993
223 nmdc:mga08y16_924844_c1 3300050511 Unclassified 857
224 nmdc:mga0n895_47043_c1 3300050512 Bacteria 4217
225 nmdc:mga0rr50_104232_c1 3300050513 Bacteria 2234
226 nmdc:mga08x19_366119_c1 3300050514 Bacteria 1008
227 nmdc:mga0a205_57941_c1 3300050515 Bacteria 1205
228 Ga0501084_0284807 3300054114 Unclassified 1395
229 Ga0501082_0090095 3300060353 Bacteria 2649
230 Ga0466962_0045066 3300061719 Unclassified 2108
231 Ga0530510_0071887 3300061734 Bacteria 2511
232 Ga0207676_10896552
233 JGI25406J46586_10028850
234 Ga0070683_100036882
235 Ga0070683_100124057
236 Ga0070683_100620689
237 Ga0070690_100054161
238 Ga0070670_100851154
239 Ga0070660_100116469
240 Ga0070691_10015172
241 Ga0070687_100937702
242 Ga0070661_100776236
243 Ga0070661_101275126
244 Ga0070692_10250743
245 Ga0070668_100265015
246 Ga0070669_100041084
247 Ga0070675_100279393
248 Ga0070674_100029999
249 Ga0070674_100250453
250 Ga0070674_100388775
251 Ga0070659_100000002
252 Ga0070659_100251515
253 Ga0070714_100046494
254 Ga0070705_100448992
255 Ga0070700_100155175
256 Ga0070700_100314707
257 Ga0070694_100343422
258 Ga0070662_100502044
259 Ga0068867_100502933
260 Ga0070699_100156989
261 Ga0070672_100000258
262 Ga0070672_100908276
263 Ga0070665_100115252
264 Ga0070664_100035466
265 Ga0070664_100357259
266 Ga0070702_100215394
267 Ga0068861_100094853
268 Ga0068861_100374726
269 Ga0068870_10141998
270 Ga0081455_10203315
271 Ga0081455_10318122
272 Ga0081538_10000034
273 Ga0081538_10012809
274 Ga0081538_10049156
275 Ga0081538_10086359
276 Ga0081538_10090658
277 Ga0081539_10001052
278 Ga0081539_10009796
279 Ga0081539_10122652
280 Ga0075365_10064561
281 Ga0075365_10148054
282 Ga0075432_10030873
283 Ga0075428_100039368
284 Ga0075428_101222454
285 Ga0075430_100108193
286 Ga0075430_100421297
287 Ga0075431_100022151
288 Ga0075431_100360325
289 Ga0075434_100039937
290 Ga0075429_100009659
291 Ga0068865_100242859
292 Ga0068865_100749233
293 Ga0075436_100321206
294 Ga0111539_10122009
295 Ga0111539_10156505
296 Ga0111539_10415019
297 Ga0111539_10530663
298 Ga0111539_10548439
299 Ga0105245_11351354
300 Ga0114129_10003293
301 Ga0114129_10126477
302 Ga0105243_10080840
303 Ga0105238_11114733
304 Ga0105249_11897312
305 Ga0163162_11508461
306 Ga0157375_11629932
307 Ga0157380_10320283
308 Ga0157377_10231588
309 Ga0157379_10398746
310 Ga0157376_10036816
311 Ga0163161_10604592
312 Ga0213876_10117847
313 Ga0207642_10401496
314 Ga0207688_10251152
315 Ga0207643_10079630
316 Ga0207693_10114457
317 Ga0207662_10187771
318 Ga0207657_10033881
319 Ga0207652_11434358
320 Ga0207646_10175994
321 Ga0207681_10005673
322 Ga0207659_10453712
323 Ga0207664_10012741
324 Ga0207690_10000084
325 Ga0207706_10530636
326 Ga0207669_10273017
327 Ga0207669_10582790
328 Ga0207704_10164380
329 Ga0207691_10000871
330 Ga0207691_10107168
331 Ga0207691_10939245
332 Ga0207661_10055731
333 Ga0207661_10307691
334 Ga0207712_10390556
335 Ga0207668_10540900
336 Ga0207708_10006634
337 Ga0207708_10152399
338 Ga0207708_10243345
339 Ga0207641_11802417
340 Ga0207648_10085638
341 Ga0207648_10703262
342 Ga0207648_10852916
343 Ga0207674_10406516
344 Ga0207675_100026183
345 Ga0268266_10526639
346 Ga0268265_11793027
347 Ga0307405_10094249
348 Ga0307405_10108921
349 Ga0307413_10006469
350 Ga0307413_10186229
351 Ga0307413_10444566
352 Ga0307413_11025636
353 Ga0307410_10202560
354 Ga0307410_10886191
355 Ga0307406_10078218
356 Ga0307406_10126994
357 Ga0307406_10181874
358 Ga0307407_10033963
359 Ga0307412_10073948
360 Ga0307412_10247376
361 Ga0307409_100108254
362 Ga0307409_100286296
363 Ga0307409_100392131
364 Ga0307409_100522568
365 Ga0307416_100109606
366 Ga0307416_100123351
367 Ga0307416_100406004
368 Ga0307414_10053971
369 Ga0307411_10202025
370 Ga0307411_10655953
371 Ga0395899_0413391
372 Ga0436364_0457620
373 Ga0395901_0234219
374 Ga0436365_1118199
375 Ga0436365_1173649
376 Ga0439450_079059
377 Ga0450916_001311
378 Ga0466972_0290599
379 Ga0466966_0013788
380 Ga0466961_0007125
381 Ga0466961_0350916
382 Ga0466963_0028789
383 Ga0466971_0007963
384 Ga0466970_0053288
385 Ga0466957_0040693
386 Ga0466957_0131335
387 Ga0466958_0013569
388 Ga0466958_0309918
389 Ga0466958_0500914
390 Ga0466958_0679904
391 Ga0466967_0006362
392 Ga0466967_0023431
393 Ga0466967_0074391
394 Ga0466967_1025688
395 Ga0495638_0014600
396 Ga0495664_0597788
397 Ga0495631_0181154
398 Ga0495625_0000109
399 Ga0495676_0242679
400 Ga0496102_0000021
401 Ga0496102_0231536
402 Ga0496103_0000001
403 Ga0496107_0567745
404 Ga0496109_0133541
405 Ga0496110_0008927
406 Ga0496111_0016171
407 Ga0496111_0170185
408 Ga0496113_0027841
409 Ga0496113_1086578
410 Ga0496115_0734347
411 Ga0496118_0129185
412 Ga0501031_0236058
413 Ga0501031_0355272
414 Ga0501033_0523170
415 Ga0501036_0904515
416 Ga0501037_0666024
417 Ga0501040_0039266
418 Ga0501041_0069754
419 Ga0501042_0009645
420 Ga0501042_0201204
421 Ga0501042_0622215
422 Ga0501042_0741490
423 Ga0501048_0292071
424 Ga0501048_0360507
425 Ga0501069_0358453
426 Ga0501070_0365978
427 Ga0501070_0397670
428 Ga0501071_0190228
429 Ga0501071_0247878
430 Ga0501072_0020309
431 Ga0501074_0043442
432 Ga0501075_0083700
433 Ga0501076_0040135
434 Ga0501076_0086767
435 Ga0501077_0299580
436 Ga0501079_0345002
437 Ga0501079_1389639
438 Ga0501081_0433548
439 Ga0501081_0651752
440 Ga0501045_0091155
441 Ga0501045_0600394
442 nmdc:mga06z11_506581_c1
443 nmdc:mga05p37_163237_c1
444 nmdc:mga09592_38167_c1
445 nmdc:mga09592_538086_c1
446 nmdc:mga0qj67_47502_c1
447 nmdc:mga0qj67_5499_c1
448 nmdc:mga0qj67_635587_c1
449 nmdc:mga06r32_149879_c1
450 nmdc:mga06r32_48409_c1
451 nmdc:mga08y16_110005_c1
452 nmdc:mga08y16_35698_c1
453 nmdc:mga08y16_723760_c1
454 nmdc:mga08y16_924844_c1
455 nmdc:mga0n895_47043_c1
456 nmdc:mga0rr50_104232_c1
457 nmdc:mga08x19_366119_c1
458 nmdc:mga0a205_57941_c1
459 Ga0501084_0284807
460 Ga0501082_0090095
461 Ga0466962_0045066
462 Ga0530510_0071887

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04545

Sigma70_r4

Sigma-70, region 4

144

193

0.99

PF04542

Sigma70_r2

Sigma-70 region 2

45

114

0.98

PF08281

Sigma70_r4_2

Sigma-70, region 4

138

191

0.97

PF07638

Sigma70_ECF

ECF sigma factor

42

197

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
1h3l-assembly1.cif.gz_A n-terminal fragment of sigr from streptomyces coelicolor 0.9098 13 76
3hug-assembly6.cif.gz_M crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl 0.8981 100 170
3hug-assembly2.cif.gz_E crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl 0.8939 101 169
3hug-assembly1.cif.gz_C crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl 0.8603 97 169
2o8x-assembly1.cif.gz_B "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.8592 105 162
ID Description Score Start End Superfamily
af_P9WGH7_10_94_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9544 13 80 1.10.1740.10
af_P9WGH1_1_91_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9511 13 80 1.10.1740.10
3vdoA01 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9394 13 80 1.10.1740.10
3hugK00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9353 106 169 1.10.10.10
1or7B01 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9305 13 84 1.10.1740.10
ID Description Score Start End GO Terms
AF-A0A7V4GDC3-F1-model_v4 Sigma-70 family RNA polymerase sigma factor 0.9124 13 167 GO:0003677
GO:0006352
GO:0016987
AF-A0A2T5HVC3-F1-model_v4 RNA polymerase sigma-70 factor (ECF subfamily) 0.9087 13 170 GO:0003677
GO:0006352
GO:0016987
AF-A0A0R1MX62-F1-model_v4 RNA polymerase sigma factor 0.9062 12 167 GO:0003677
GO:0006352
GO:0016987
AF-A0A840ACG7-F1-model_v4 RNA polymerase sigma factor 0.9013 11 169 GO:0003677
GO:0006352
GO:0016987
AF-A0A1F8LDH9-F1-model_v4 Sigma-70 family RNA polymerase sigma factor 0.901 13 170 GO:0003677
GO:0006352
GO:0016987

Map