F343521

General Info

Members Datasets Scaffolds Average Seq Length
230 147 230 230

Family's Representative Sequence

Representative Sequence 3300060353|Ga0501082_0094811|Ga0501082_0094811_1626_2402
Length 258
Sequence MTLRTSSGATVADDDAELVARISRRESAAFEMLMRRHNGKLFRVARAILKNDAEAEDALQDAYVDAYRHIHEFRGGARLGTWLTRIVINQALARLRRSRRDRIVVPFGDRPTGRTPADETDLPDDRTESPTTAVLRAETRKLLERRIDELPIAFRTVFVMREVEELSVDETAECLGIPPGTVRTRLFRARALLREALARDVDLATSDVFGFAGQRCDRVVAAVLQRPIPGIRGGPPLPMPGNAAPGRSIQWTALTVAY

Samples

Sample ID Description Type Environment
1 2162886011 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
8 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
9 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
10 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
13 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
16 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
19 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
20 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
21 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
24 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
25 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
26 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
27 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
28 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
29 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
30 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
31 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
32 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
33 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
34 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
35 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
36 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
37 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
38 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
39 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
40 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
41 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
42 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
43 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
44 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
45 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
46 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
47 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
50 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
51 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
52 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
53 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
54 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
55 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
56 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
57 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
58 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
59 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
87 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
88 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
89 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
90 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
91 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
92 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
93 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
94 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
95 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
96 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
97 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
98 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
99 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
100 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
101 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
102 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
103 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
104 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
105 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
106 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
107 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
108 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
109 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
110 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
111 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
112 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
113 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
114 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
115 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
116 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
117 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
118 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
119 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
120 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
121 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
124 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
128 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
129 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
130 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
131 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
132 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
133 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
134 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
135 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
136 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
137 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
138 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
139 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
140 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
141 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
142 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
143 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
144 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
145 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
146 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
147 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.17
Nodule 0
Rhizoplane 6.09
Rhizosphere 88.26
Stem 0
Stem Tuber 0
Unclassified 3.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 MRS1b_contig_7269705 2162886011 Bacteria 1989
2 rootH1_10089763 3300003323 Unclassified 1308
3 Ga0065715_10122900 3300005293 Unclassified 2192
4 Ga0065715_10167952 3300005293 Unclassified 1570
5 Ga0065715_10217618 3300005293 Unclassified 1283
6 Ga0070658_10018957 3300005327 Bacteria 5512
7 Ga0070683_100000220 3300005329 Bacteria 39059
8 Ga0070670_100003702 3300005331 Bacteria 12741
9 Ga0070670_100200731 3300005331 Bacteria 1733
10 Ga0068869_100264738 3300005334 Bacteria 1377
11 Ga0070666_10066924 3300005335 Bacteria 2439
12 Ga0070666_10075182 3300005335 Unclassified 2303
13 Ga0070682_100028261 3300005337 Bacteria 3372
14 Ga0070682_100256151 3300005337 Bacteria 1264
15 Ga0070682_100355247 3300005337 Unclassified 1094
16 Ga0068868_100861426 3300005338 Bacteria 821
17 Ga0070668_100402250 3300005347 Bacteria 1169
18 Ga0070668_100933663 3300005347 Unclassified 777
19 Ga0070674_100016313 3300005356 Bacteria 4655
20 Ga0070673_100493512 3300005364 Unclassified 1107
21 Ga0070667_100000844 3300005367 Bacteria 28414
22 Ga0070678_100002281 3300005456 Bacteria 10438
23 Ga0070678_100829234 3300005456 Bacteria 841
24 Ga0070662_100211291 3300005457 Bacteria 1544
25 Ga0070681_10376504 3300005458 Bacteria 1330
26 Ga0068867_100046536 3300005459 Bacteria 3187
27 Ga0070706_100010070 3300005467 Bacteria 8783
28 Ga0070707_100105507 3300005468 Bacteria 2732
29 Ga0070698_100487292 3300005471 Unclassified 1170
30 Ga0070679_100080992 3300005530 Bacteria 3236
31 Ga0070679_100509737 3300005530 Bacteria 1147
32 Ga0070684_100000182 3300005535 Bacteria 43378
33 Ga0070684_100513858 3300005535 Bacteria 1110
34 Ga0068853_100505513 3300005539 Unclassified 1141
35 Ga0070672_100017151 3300005543 Bacteria 5206
36 Ga0070672_100442941 3300005543 Bacteria 1118
37 Ga0070686_100077896 3300005544 Bacteria 2187
38 Ga0070693_100009256 3300005547 Bacteria 4893
39 Ga0070665_100030996 3300005548 Bacteria 5381
40 Ga0068855_100024506 3300005563 Bacteria 7219
41 Ga0068855_100106207 3300005563 Bacteria 3227
42 Ga0070664_100003120 3300005564 Bacteria 13399
43 Ga0070664_100300403 3300005564 Bacteria 1450
44 Ga0070664_100687714 3300005564 Bacteria 952
45 Ga0068856_100311866 3300005614 Bacteria 1591
46 Ga0068864_100045847 3300005618 Unclassified 3750
47 Ga0068861_100009566 3300005719 Bacteria 6697
48 Ga0068861_100102277 3300005719 Bacteria 2281
49 Ga0081455_10222054 3300005937 Bacteria 1399
50 Ga0075365_10004949 3300006038 Bacteria 7128
51 Ga0075364_10224581 3300006051 Bacteria 1275
52 Ga0070716_100232335 3300006173 Bacteria 1246
53 Ga0075366_10059141 3300006195 Unclassified 2276
54 Ga0075366_10373247 3300006195 Unclassified 877
55 Ga0075428_100024350 3300006844 Bacteria 6698
56 Ga0075428_100165246 3300006844 Bacteria 2401
57 Ga0075430_100002785 3300006846 Bacteria 14610
58 Ga0075430_100015753 3300006846 Bacteria 6439
59 Ga0075430_100018336 3300006846 Bacteria 5957
60 Ga0075430_100055726 3300006846 Unclassified 3324
61 Ga0075431_100018522 3300006847 Bacteria 7092
62 Ga0075431_100027502 3300006847 Bacteria 5837
63 Ga0075431_100055025 3300006847 Bacteria 4104
64 Ga0075431_100342734 3300006847 Bacteria 1504
65 Ga0075433_10041833 3300006852 Unclassified 3972
66 Ga0075433_10766813 3300006852 Unclassified 843
67 Ga0075434_100088862 3300006871 Unclassified 3092
68 Ga0075434_100539692 3300006871 Bacteria 1186
69 Ga0075434_100605085 3300006871 Bacteria 1115
70 Ga0075429_100073069 3300006880 Unclassified 2987
71 Ga0075429_100565919 3300006880 Bacteria 996
72 Ga0068865_100379674 3300006881 Unclassified 1152
73 Ga0105251_10014001 3300009011 Bacteria 4455
74 Ga0111539_10369630 3300009094 Bacteria 1669
75 Ga0114129_10002414 3300009147 Bacteria 25954
76 Ga0114129_10007555 3300009147 Bacteria 15480
77 Ga0114129_10014182 3300009147 Bacteria 11356
78 Ga0114129_10424937 3300009147 Bacteria 1747
79 Ga0105242_10691348 3300009176 Bacteria 997
80 Ga0105237_10000048 3300009545 Bacteria 165532
81 Ga0105237_10165885 3300009545 Bacteria 2208
82 Ga0105238_10004626 3300009551 Bacteria 13628
83 Ga0105239_10177300 3300010375 Unclassified 2384
84 Ga0157374_10139364 3300013296 Bacteria 2353
85 Ga0157374_10205534 3300013296 Bacteria 1930
86 Ga0163163_10015204 3300014325 Bacteria 7109
87 Ga0163163_10490585 3300014325 Bacteria 1290
88 Ga0157380_10093502 3300014326 Bacteria 2486
89 Ga0157379_10684035 3300014968 Bacteria 962
90 Ga0157376_10140543 3300014969 Bacteria 2165
91 Ga0157376_10754018 3300014969 Bacteria 983
92 Ga0209759_1006576 3300025256 Bacteria 3882
93 Ga0207697_10038366 3300025315 Bacteria 1964
94 Ga0207680_10052676 3300025903 Bacteria 2440
95 Ga0207680_10315139 3300025903 Unclassified 1093
96 Ga0207647_10051012 3300025904 Bacteria 2559
97 Ga0207705_10011542 3300025909 Bacteria 6390
98 Ga0207684_10356276 3300025910 Bacteria 1259
99 Ga0207684_10548336 3300025910 Unclassified 989
100 Ga0207707_10505373 3300025912 Bacteria 1030
101 Ga0207671_10000077 3300025914 Bacteria 150801
102 Ga0207671_10188753 3300025914 Bacteria 1606
103 Ga0207652_10011810 3300025921 Bacteria 7048
104 Ga0207646_10010475 3300025922 Bacteria 9055
105 Ga0207646_10486257 3300025922 Bacteria 1113
106 Ga0207650_10008394 3300025925 Bacteria 7050
107 Ga0207650_10169751 3300025925 Bacteria 1733
108 Ga0207659_10052608 3300025926 Bacteria 2902
109 Ga0207644_10580868 3300025931 Bacteria 929
110 Ga0207670_10125685 3300025936 Bacteria 1871
111 Ga0207691_10035769 3300025940 Bacteria 4605
112 Ga0207661_10002243 3300025944 Bacteria 13330
113 Ga0207679_10009493 3300025945 Bacteria 6236
114 Ga0207679_10250663 3300025945 Bacteria 1505
115 Ga0207679_10887154 3300025945 Bacteria 815
116 Ga0207667_10050996 3300025949 Bacteria 4364
117 Ga0207668_10076365 3300025972 Bacteria 2412
118 Ga0207677_10729293 3300026023 Bacteria 882
119 Ga0207639_10452681 3300026041 Unclassified 1166
120 Ga0207678_10414083 3300026067 Unclassified 1168
121 Ga0207702_10017324 3300026078 Bacteria 5961
122 Ga0207676_10109870 3300026095 Bacteria 2305
123 Ga0207675_100010511 3300026118 Bacteria 8673
124 Ga0207675_100129931 3300026118 Bacteria 2388
125 Ga0207683_10006372 3300026121 Bacteria 10106
126 Ga0268266_10096932 3300028379 Bacteria 2593
127 Ga0268264_10458936 3300028381 Bacteria 1236
128 Ga0307408_100021068 3300031548 Bacteria 4407
129 Ga0307410_10735532 3300031852 Bacteria 834
130 Ga0307409_100017028 3300031995 Bacteria 4831
131 Ga0307409_100476382 3300031995 Bacteria 1210
132 Ga0307416_100033612 3300032002 Bacteria 3890
133 Ga0307416_100342416 3300032002 Bacteria 1509
134 Ga0307416_100803353 3300032002 Bacteria 1036
135 Ga0307411_10023603 3300032005 Bacteria 3647
136 Ga0307411_10116318 3300032005 Bacteria 1925
137 Ga0307411_10235157 3300032005 Bacteria 1431
138 Ga0307415_100114229 3300032126 Bacteria 2010
139 Ga0373937_0302253 3300036401 Bacteria 1512
140 Ga0395899_0004729 3300037312 Bacteria 10623
141 Ga0395899_0441842 3300037312 Bacteria 853
142 Ga0395900_0002836 3300037418 Bacteria 18919
143 Ga0395900_0035482 3300037418 Bacteria 5136
144 Ga0395900_0187506 3300037418 Bacteria 2099
145 Ga0395898_0005211 3300037466 Bacteria 14052
146 Ga0395905_0002642 3300037471 Bacteria 19674
147 Ga0395905_0006089 3300037471 Bacteria 12188
148 Ga0395905_0048256 3300037471 Bacteria 3990
149 Ga0395905_0065870 3300037471 Bacteria 3392
150 Ga0395905_0073503 3300037471 Bacteria 3205
151 Ga0395905_0492667 3300037471 Bacteria 1125
152 Ga0395905_0794762 3300037471 Bacteria 849
153 Ga0395901_0098801 3300038443 Bacteria 3060
154 Ga0395901_0127925 3300038443 Bacteria 2670
155 Ga0395901_0465811 3300038443 Bacteria 1290
156 Ga0451807_1183676 3300041486 Bacteria 779
157 Ga0439433_0046423 3300041999 Unclassified 1018
158 Ga0450896_006527 3300042133 Bacteria 1600
159 Ga0439460_0015246 3300042461 Bacteria 2032
160 Ga0466961_0146965 3300044693 Bacteria 1474
161 Ga0453684_0945963 3300044712 Unclassified 920
162 Ga0495672_0127680 3300047320 Bacteria 1342
163 Ga0496101_0013740 3300048904 Bacteria 5431
164 Ga0496103_0131309 3300048906 Bacteria 1599
165 Ga0496104_0002301 3300048907 Bacteria 16489
166 Ga0496104_0274017 3300048907 Bacteria 1600
167 Ga0496105_0162233 3300048908 Bacteria 1835
168 Ga0496105_0295545 3300048908 Bacteria 1303
169 Ga0496107_0112941 3300048910 Bacteria 1998
170 Ga0496108_0002075 3300048911 Bacteria 16024
171 Ga0496109_0002281 3300048912 Bacteria 15949
172 Ga0496111_0029994 3300048914 Bacteria 3866
173 Ga0496112_0000500 3300048915 Bacteria 26486
174 Ga0496112_0136614 3300048915 Bacteria 2421
175 Ga0496114_0559699 3300048917 Bacteria 1010
176 Ga0496116_0186276 3300048919 Bacteria 1104
177 Ga0496118_0146745 3300048921 Bacteria 1484
178 Ga0496119_0133733 3300048922 Bacteria 1348
179 Ga0496121_0040554 3300048924 Bacteria 4082
180 Ga0496122_0110320 3300048925 Bacteria 1808
181 Ga0496123_0106033 3300048926 Bacteria 1620
182 Ga0501034_0268983 3300049571 Bacteria 1646
183 Ga0501037_0529686 3300049573 Unclassified 797
184 Ga0501039_0405314 3300049575 Bacteria 1071
185 Ga0501040_0228375 3300049576 Unclassified 1325
186 Ga0501040_0378557 3300049576 Bacteria 1015
187 Ga0501041_0151529 3300049577 Bacteria 1448
188 Ga0501042_0061209 3300049578 Bacteria 2690
189 Ga0501067_0071143 3300049583 Unclassified 1926
190 Ga0501069_0289508 3300049585 Bacteria 959
191 Ga0501071_0314394 3300049587 Unclassified 1189
192 Ga0501071_0334318 3300049587 Bacteria 1151
193 Ga0501072_0250817 3300049588 Bacteria 1409
194 Ga0501072_0562699 3300049588 Bacteria 900
195 Ga0501075_0018309 3300049591 Bacteria 5068
196 Ga0501075_0032760 3300049591 Bacteria 3863
197 Ga0501076_0192417 3300049592 Bacteria 1665
198 Ga0501077_0033987 3300049593 Bacteria 3245
199 Ga0501079_0143077 3300049741 Bacteria 1863
200 Ga0501079_0170894 3300049741 Bacteria 1695
201 Ga0501079_0574029 3300049741 Bacteria 887
202 Ga0501081_0049396 3300049743 Bacteria 2897
203 Ga0501081_0106431 3300049743 Bacteria 1988
204 Ga0501081_0123416 3300049743 Bacteria 1847
205 Ga0501044_0654557 3300049823 Bacteria 939
206 nmdc:mga00v17_200731_c1 3300050491 Bacteria 1289
207 nmdc:mga05p37_3369_c1 3300050507 Bacteria 18656
208 nmdc:mga05p37_4608_c1 3300050507 Bacteria 16118
209 nmdc:mga05p37_62226_c1 3300050507 Bacteria 4593
210 nmdc:mga05p37_91910_c1 3300050507 Bacteria 3739
211 nmdc:mga09592_300970_c1 3300050508 Bacteria 1391
212 nmdc:mga09592_47687_c1 3300050508 Bacteria 3611
213 nmdc:mga0qj67_18960_c1 3300050509 Bacteria 5250
214 nmdc:mga0qj67_29477_c1 3300050509 Bacteria 4263
215 nmdc:mga0qj67_30163_c1 3300050509 Unclassified 4218
216 nmdc:mga06r32_375524_c1 3300050510 Bacteria 1405
217 nmdc:mga06r32_532590_c1 3300050510 Unclassified 1150
218 nmdc:mga06r32_57693_c1 3300050510 Unclassified 3730
219 nmdc:mga08y16_930411_c1 3300050511 Unclassified 853
220 nmdc:mga0n895_379075_c1 3300050512 Bacteria 1431
221 nmdc:mga0n895_439182_c1 3300050512 Bacteria 1318
222 nmdc:mga0rr50_354742_c1 3300050513 Bacteria 1234
223 nmdc:mga0a205_229548_c1 3300050515 Bacteria 1740
224 nmdc:mga0a205_255955_c1 3300050515 Bacteria 1629
225 nmdc:mga0a205_89835_c1 3300050515 Bacteria 2969
226 Ga0501082_0072571 3300060353 Bacteria 2965
227 Ga0501082_0094811 3300060353 Bacteria 2579
228 Ga0501082_0316306 3300060353 Bacteria 1360
229 Ga0501082_0343294 3300060353 Bacteria 1301
230 Ga0530510_0131865 3300061734 Bacteria 1838

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300048926 Ga0496123_0106033 Ga0496123_0106033_17_580 185
2 3300003323 rootH1_10089763 rootH1_100897632 190
3 3300006846 Ga0075430_100055726 Ga0075430_1000557263 196
4 3300032126 Ga0307415_100114229 Ga0307415_1001142291 201
5 3300005329 Ga0070683_100000220 Ga0070683_10000022020 208
6 3300005331 Ga0070670_100003702 Ga0070670_1000037028 208
7 3300005335 Ga0070666_10066924 Ga0070666_100669242 208
8 3300005457 Ga0070662_100211291 Ga0070662_1002112912 208
9 3300005535 Ga0070684_100000182 Ga0070684_10000018220 208
10 3300005564 Ga0070664_100003120 Ga0070664_1000031207 208
11 3300006038 Ga0075365_10004949 Ga0075365_100049492 208
12 3300006051 Ga0075364_10224581 Ga0075364_102245812 208
13 3300006195 Ga0075366_10373247 Ga0075366_103732471 208
14 3300006871 Ga0075434_100605085 Ga0075434_1006050852 208
15 3300009094 Ga0111539_10369630 Ga0111539_103696303 208
16 3300025315 Ga0207697_10038366 Ga0207697_100383662 208
17 3300025944 Ga0207661_10002243 Ga0207661_100022432 208
18 3300049571 Ga0501034_0268983 Ga0501034_0268983_177_836 208
19 3300050491 nmdc:mga00v17_200731_c1 nmdc:mga00v17_200731_c1_232_861 208
20 3300050511 nmdc:mga08y16_930411_c1 nmdc:mga08y16_930411_c1_99_728 208
21 3300005347 Ga0070668_100402250 Ga0070668_1004022502 211
22 3300006852 Ga0075433_10766813 Ga0075433_107668131 212
23 3300050515 nmdc:mga0a205_229548_c1 nmdc:mga0a205_229548_c1_1007_1681 212
24 3300005530 Ga0070679_100509737 Ga0070679_1005097372 215
25 3300049583 Ga0501067_0071143 Ga0501067_0071143_47_739 215
26 3300049585 Ga0501069_0289508 Ga0501069_0289508_43_735 215
27 3300049823 Ga0501044_0654557 Ga0501044_0654557_119_769 215
28 3300060353 Ga0501082_0316306 Ga0501082_0316306_278_928 215
29 3300005719 Ga0068861_100009566 Ga0068861_1000095666 216
30 3300009545 Ga0105237_10165885 Ga0105237_101658852 216
31 3300041486 Ga0451807_1183676 Ga0451807_1183676_61_735 216
32 3300042461 Ga0439460_0015246 Ga0439460_0015246_1290_1979 217
33 3300047320 Ga0495672_0127680 Ga0495672_0127680_365_1054 217
34 3300005563 Ga0068855_100106207 Ga0068855_1001062074 218
35 3300006846 Ga0075430_100018336 Ga0075430_1000183363 218
36 3300006847 Ga0075431_100027502 Ga0075431_1000275026 218
37 3300006880 Ga0075429_100565919 Ga0075429_1005659192 218
38 3300009147 Ga0114129_10424937 Ga0114129_104249372 218
39 3300037312 Ga0395899_0004729 Ga0395899_0004729_8574_9245 218
40 3300037312 Ga0395899_0441842 Ga0395899_0441842_10_678 218
41 3300037418 Ga0395900_0002836 Ga0395900_0002836_6228_6896 218
42 3300037418 Ga0395900_0035482 Ga0395900_0035482_2368_3039 218
43 3300037418 Ga0395900_0187506 Ga0395900_0187506_91_759 218
44 3300037466 Ga0395898_0005211 Ga0395898_0005211_10602_11273 218
45 3300037471 Ga0395905_0002642 Ga0395905_0002642_14858_15529 218
46 3300037471 Ga0395905_0006089 Ga0395905_0006089_4461_5132 218
47 3300037471 Ga0395905_0048256 Ga0395905_0048256_1298_1966 218
48 3300037471 Ga0395905_0065870 Ga0395905_0065870_909_1577 218
49 3300037471 Ga0395905_0794762 Ga0395905_0794762_66_737 218
50 3300038443 Ga0395901_0098801 Ga0395901_0098801_2011_2679 218
51 3300038443 Ga0395901_0127925 Ga0395901_0127925_1598_2269 218
52 3300038443 Ga0395901_0465811 Ga0395901_0465811_172_843 218
53 3300050507 nmdc:mga05p37_91910_c1 nmdc:mga05p37_91910_c1_2543_3232 218
54 3300050508 nmdc:mga09592_47687_c1 nmdc:mga09592_47687_c1_2622_3311 218
55 3300050509 nmdc:mga0qj67_18960_c1 nmdc:mga0qj67_18960_c1_2569_3258 218
56 3300050510 nmdc:mga06r32_375524_c1 nmdc:mga06r32_375524_c1_557_1246 218
57 3300005456 Ga0070678_100829234 Ga0070678_1008292341 219
58 3300006871 Ga0075434_100539692 Ga0075434_1005396922 220
59 3300032002 Ga0307416_100803353 Ga0307416_1008033532 221
60 3300032005 Ga0307411_10235157 Ga0307411_102351572 221
61 3300048906 Ga0496103_0131309 Ga0496103_0131309_795_1478 222
62 3300005331 Ga0070670_100200731 Ga0070670_1002007312 223
63 3300005337 Ga0070682_100256151 Ga0070682_1002561512 223
64 3300005364 Ga0070673_100493512 Ga0070673_1004935121 223
65 3300005535 Ga0070684_100513858 Ga0070684_1005138581 223
66 3300005544 Ga0070686_100077896 Ga0070686_1000778962 223
67 3300005564 Ga0070664_100687714 Ga0070664_1006877141 223
68 3300006881 Ga0068865_100379674 Ga0068865_1003796741 223
69 3300009176 Ga0105242_10691348 Ga0105242_106913481 223
70 3300009551 Ga0105238_10004626 Ga0105238_100046265 223
71 3300014968 Ga0157379_10684035 Ga0157379_106840351 223
72 3300014969 Ga0157376_10754018 Ga0157376_107540181 223
73 3300025914 Ga0207671_10188753 Ga0207671_101887532 223
74 3300025925 Ga0207650_10169751 Ga0207650_101697511 223
75 3300025945 Ga0207679_10887154 Ga0207679_108871541 223
76 3300028381 Ga0268264_10458936 Ga0268264_104589362 223
77 3300031995 Ga0307409_100017028 Ga0307409_1000170282 223
78 3300048917 Ga0496114_0559699 Ga0496114_0559699_133_807 223
79 3300006844 Ga0075428_100024350 Ga0075428_1000243505 224
80 3300006846 Ga0075430_100002785 Ga0075430_10000278510 224
81 3300006847 Ga0075431_100018522 Ga0075431_1000185228 224
82 3300006880 Ga0075429_100073069 Ga0075429_1000730693 224
83 3300009147 Ga0114129_10007555 Ga0114129_100075558 224
84 3300037471 Ga0395905_0073503 Ga0395905_0073503_949_1656 224
85 3300042133 Ga0450896_006527 Ga0450896_006527_464_1165 224
86 3300049588 Ga0501072_0562699 Ga0501072_0562699_173_856 224
87 3300050507 nmdc:mga05p37_4608_c1 nmdc:mga05p37_4608_c1_4052_4744 224
88 3300050508 nmdc:mga09592_300970_c1 nmdc:mga09592_300970_c1_89_781 224
89 3300050509 nmdc:mga0qj67_29477_c1 nmdc:mga0qj67_29477_c1_1356_2048 224
90 3300050509 nmdc:mga0qj67_30163_c1 nmdc:mga0qj67_30163_c1_1661_2353 224
91 3300050510 nmdc:mga06r32_57693_c1 nmdc:mga06r32_57693_c1_2863_3555 224
92 3300005327 Ga0070658_10018957 Ga0070658_100189573 225
93 3300005337 Ga0070682_100028261 Ga0070682_1000282612 225
94 3300005458 Ga0070681_10376504 Ga0070681_103765042 225
95 3300005530 Ga0070679_100080992 Ga0070679_1000809923 225
96 3300005563 Ga0068855_100024506 Ga0068855_1000245067 225
97 3300009011 Ga0105251_10014001 Ga0105251_100140015 225
98 3300009545 Ga0105237_10000048 Ga0105237_10000048109 225
99 3300010375 Ga0105239_10177300 Ga0105239_101773003 225
100 3300025256 Ga0209759_1006576 Ga0209759_10065762 225
101 3300025909 Ga0207705_10011542 Ga0207705_100115423 225
102 3300025912 Ga0207707_10505373 Ga0207707_105053732 225
103 3300025914 Ga0207671_10000077 Ga0207671_1000007733 225
104 3300025921 Ga0207652_10011810 Ga0207652_100118103 225
105 3300025949 Ga0207667_10050996 Ga0207667_100509963 225
106 3300044693 Ga0466961_0146965 Ga0466961_0146965_329_1021 225
107 3300048904 Ga0496101_0013740 Ga0496101_0013740_4182_4874 225
108 3300048907 Ga0496104_0274017 Ga0496104_0274017_874_1566 225
109 3300048908 Ga0496105_0295545 Ga0496105_0295545_502_1194 225
110 3300048910 Ga0496107_0112941 Ga0496107_0112941_777_1469 225
111 3300048915 Ga0496112_0136614 Ga0496112_0136614_1464_2156 225
112 3300048919 Ga0496116_0186276 Ga0496116_0186276_359_1051 225
113 3300048921 Ga0496118_0146745 Ga0496118_0146745_251_943 225
114 3300048922 Ga0496119_0133733 Ga0496119_0133733_565_1257 225
115 3300048924 Ga0496121_0040554 Ga0496121_0040554_845_1537 225
116 3300048925 Ga0496122_0110320 Ga0496122_0110320_654_1346 225
117 3300049576 Ga0501040_0228375 Ga0501040_0228375_532_1239 225
118 3300049587 Ga0501071_0314394 Ga0501071_0314394_196_903 225
119 3300049591 Ga0501075_0018309 Ga0501075_0018309_872_1579 225
120 3300049741 Ga0501079_0143077 Ga0501079_0143077_377_1084 225
121 3300049743 Ga0501081_0049396 Ga0501081_0049396_188_895 225
122 3300060353 Ga0501082_0072571 Ga0501082_0072571_196_903 225
123 3300061734 Ga0530510_0131865 Ga0530510_0131865_28_735 225
124 3300005471 Ga0070698_100487292 Ga0070698_1004872922 226
125 3300005293 Ga0065715_10122900 Ga0065715_101229001 227
126 3300005937 Ga0081455_10222054 Ga0081455_102220542 227
127 3300006852 Ga0075433_10041833 Ga0075433_100418331 227
128 3300006871 Ga0075434_100088862 Ga0075434_1000888622 227
129 3300026067 Ga0207678_10414083 Ga0207678_104140831 227
130 3300037471 Ga0395905_0492667 Ga0395905_0492667_377_1075 227
131 3300049575 Ga0501039_0405314 Ga0501039_0405314_205_906 227
132 3300050512 nmdc:mga0n895_379075_c1 nmdc:mga0n895_379075_c1_408_1091 227
133 3300050515 nmdc:mga0a205_89835_c1 nmdc:mga0a205_89835_c1_1337_2020 227
134 3300005293 Ga0065715_10167952 Ga0065715_101679522 228
135 3300005293 Ga0065715_10217618 Ga0065715_102176182 228
136 3300005334 Ga0068869_100264738 Ga0068869_1002647382 228
137 3300005467 Ga0070706_100010070 Ga0070706_1000100702 228
138 3300005539 Ga0068853_100505513 Ga0068853_1005055131 228
139 3300005547 Ga0070693_100009256 Ga0070693_1000092562 228
140 3300006844 Ga0075428_100165246 Ga0075428_1001652462 228
141 3300006846 Ga0075430_100015753 Ga0075430_1000157535 228
142 3300006847 Ga0075431_100055025 Ga0075431_1000550253 228
143 3300006847 Ga0075431_100342734 Ga0075431_1003427343 228
144 3300009147 Ga0114129_10014182 Ga0114129_1001418212 228
145 3300014326 Ga0157380_10093502 Ga0157380_100935023 228
146 3300025910 Ga0207684_10356276 Ga0207684_103562762 228
147 3300025922 Ga0207646_10486257 Ga0207646_104862571 228
148 3300026041 Ga0207639_10452681 Ga0207639_104526812 228
149 3300049573 Ga0501037_0529686 Ga0501037_0529686_10_702 228
150 3300049592 Ga0501076_0192417 Ga0501076_0192417_534_1226 228
151 3300049593 Ga0501077_0033987 Ga0501077_0033987_82_774 228
152 3300049741 Ga0501079_0170894 Ga0501079_0170894_456_1148 228
153 3300049743 Ga0501081_0123416 Ga0501081_0123416_899_1591 228
154 3300050507 nmdc:mga05p37_62226_c1 nmdc:mga05p37_62226_c1_1532_2236 228
155 3300005347 Ga0070668_100933663 Ga0070668_1009336631 229
156 3300006195 Ga0075366_10059141 Ga0075366_100591411 229
157 3300009147 Ga0114129_10002414 Ga0114129_1000241415 229
158 3300026118 Ga0207675_100010511 Ga0207675_1000105114 229
159 3300036401 Ga0373937_0302253 Ga0373937_0302253_167_925 229
160 3300044712 Ga0453684_0945963 Ga0453684_0945963_114_842 229
161 3300050507 nmdc:mga05p37_3369_c1 nmdc:mga05p37_3369_c1_16404_17093 229
162 3300060353 Ga0501082_0343294 Ga0501082_0343294_571_1263 229
163 3300005719 Ga0068861_100102277 Ga0068861_1001022772 230
164 3300025904 Ga0207647_10051012 Ga0207647_100510124 230
165 3300026118 Ga0207675_100129931 Ga0207675_1001299312 230
166 3300049576 Ga0501040_0378557 Ga0501040_0378557_74_766 230
167 3300049577 Ga0501041_0151529 Ga0501041_0151529_644_1336 230
168 3300049578 Ga0501042_0061209 Ga0501042_0061209_923_1615 230
169 3300049587 Ga0501071_0334318 Ga0501071_0334318_161_853 230
170 3300049588 Ga0501072_0250817 Ga0501072_0250817_246_938 230
171 3300049591 Ga0501075_0032760 Ga0501075_0032760_509_1201 230
172 3300049741 Ga0501079_0574029 Ga0501079_0574029_167_859 230
173 3300049743 Ga0501081_0106431 Ga0501081_0106431_941_1633 230
174 3300005468 Ga0070707_100105507 Ga0070707_1001055074 231
175 3300006173 Ga0070716_100232335 Ga0070716_1002323352 231
176 3300025910 Ga0207684_10548336 Ga0207684_105483362 231
177 3300025922 Ga0207646_10010475 Ga0207646_100104752 231
178 3300050513 nmdc:mga0rr50_354742_c1 nmdc:mga0rr50_354742_c1_34_732 231
179 3300031852 Ga0307410_10735532 Ga0307410_107355321 232
180 3300031995 Ga0307409_100476382 Ga0307409_1004763822 232
181 3300032005 Ga0307411_10116318 Ga0307411_101163182 232
182 3300050515 nmdc:mga0a205_255955_c1 nmdc:mga0a205_255955_c1_76_777 232
183 3300014325 Ga0163163_10490585 Ga0163163_104905852 233
184 3300005338 Ga0068868_100861426 Ga0068868_1008614261 235
185 3300005564 Ga0070664_100300403 Ga0070664_1003004032 235
186 3300005614 Ga0068856_100311866 Ga0068856_1003118662 235
187 3300025945 Ga0207679_10250663 Ga0207679_102506631 235
188 3300026023 Ga0207677_10729293 Ga0207677_107292931 235
189 3300026078 Ga0207702_10017324 Ga0207702_100173243 235
190 3300041999 Ga0439433_0046423 Ga0439433_0046423_124_861 235
191 3300060353 Ga0501082_0094811 Ga0501082_0094811_1626_2402 236
192 3300032002 Ga0307416_100342416 Ga0307416_1003424162 237
193 3300005335 Ga0070666_10075182 Ga0070666_100751821 238
194 3300005356 Ga0070674_100016313 Ga0070674_1000163134 238
195 3300005367 Ga0070667_100000844 Ga0070667_1000008448 238
196 3300005456 Ga0070678_100002281 Ga0070678_1000022817 238
197 3300005459 Ga0068867_100046536 Ga0068867_1000465363 238
198 3300005543 Ga0070672_100017151 Ga0070672_1000171514 238
199 3300005548 Ga0070665_100030996 Ga0070665_1000309966 238
200 3300013296 Ga0157374_10139364 Ga0157374_101393642 238
201 3300014969 Ga0157376_10140543 Ga0157376_101405432 238
202 3300025903 Ga0207680_10315139 Ga0207680_103151391 238
203 3300025940 Ga0207691_10035769 Ga0207691_100357694 238
204 3300025972 Ga0207668_10076365 Ga0207668_100763652 238
205 3300026121 Ga0207683_10006372 Ga0207683_100063727 238
206 3300028379 Ga0268266_10096932 Ga0268266_100969324 238
207 3300050510 nmdc:mga06r32_532590_c1 nmdc:mga06r32_532590_c1_264_1019 240
208 3300031548 Ga0307408_100021068 Ga0307408_1000210682 241
209 3300032002 Ga0307416_100033612 Ga0307416_1000336122 241
210 3300032005 Ga0307411_10023603 Ga0307411_100236032 241
211 3300005337 Ga0070682_100355247 Ga0070682_1003552471 242
212 2162886011 MRS1b_contig_7269705 MRS1b_0466.00002950 243
213 3300005543 Ga0070672_100442941 Ga0070672_1004429412 243
214 3300005618 Ga0068864_100045847 Ga0068864_1000458472 243
215 3300013296 Ga0157374_10205534 Ga0157374_102055342 243
216 3300014325 Ga0163163_10015204 Ga0163163_100152042 243
217 3300025903 Ga0207680_10052676 Ga0207680_100526762 243
218 3300025925 Ga0207650_10008394 Ga0207650_100083944 243
219 3300025926 Ga0207659_10052608 Ga0207659_100526082 243
220 3300025931 Ga0207644_10580868 Ga0207644_105808682 243
221 3300025936 Ga0207670_10125685 Ga0207670_101256853 243
222 3300025945 Ga0207679_10009493 Ga0207679_100094933 243
223 3300026095 Ga0207676_10109870 Ga0207676_101098704 243
224 3300048907 Ga0496104_0002301 Ga0496104_0002301_10690_11421 243
225 3300048908 Ga0496105_0162233 Ga0496105_0162233_788_1519 243
226 3300048911 Ga0496108_0002075 Ga0496108_0002075_5089_5820 243
227 3300048912 Ga0496109_0002281 Ga0496109_0002281_933_1664 243
228 3300048914 Ga0496111_0029994 Ga0496111_0029994_824_1555 243
229 3300048915 Ga0496112_0000500 Ga0496112_0000500_8834_9565 243
230 3300050512 nmdc:mga0n895_439182_c1 nmdc:mga0n895_439182_c1_472_1206 243

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04542

Sigma70_r2

Sigma-70 region 2

33

101

0.96

PF04545

Sigma70_r4

Sigma-70, region 4

146

195

0.96

PF08281

Sigma70_r4_2

Sigma-70, region 4

140

193

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
3hug-assembly2.cif.gz_E crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl 0.9709 135 201
6jhe-assembly1.cif.gz_A crystal structure of bacillus subtilis sigw domain 4 in complexed with -35 element dna 0.9698 151 199
2o8x-assembly1.cif.gz_B "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9644 139 195
2o8x-assembly1.cif.gz_A "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9613 139 195
3hug-assembly6.cif.gz_M crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl 0.9573 135 201
ID Description Score Start End Superfamily
2o8xC00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9665 139 195 1.10.10.10
3hugK00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9646 139 201 1.10.10.10
2o8xB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9644 139 195 1.10.10.10
af_P9WGH7_10_94_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9639 18 98 1.10.1740.10
2o8xA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9613 139 195 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A2V8ZPB3-F1-model_v4 RNA polymerase sigma-70 region 2 domain-containing protein 0.9117 13 105 GO:0006352
GO:0016987
AF-A0A656TKA9-F1-model_v4 deleted 0.9102 14 109
AF-A0A2V9B3W7-F1-model_v4 RNA polymerase sigma factor 0.9064 7 102 GO:0003677
GO:0006352
GO:0016987
AF-A0A2V9B3W7-F1-model_v4 RNA polymerase sigma factor 0.889 7 102 GO:0003677
GO:0006352
GO:0016987
AF-S2D3Z6-F1-model_v4 RNA polymerase ECF-type sigma factor 0.8839 10 109 GO:0006352
GO:0016987

Feature Viewer

pLDDT pTM Quality
83.55 0.65 Medium
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Predicted Structure (AlphaFold2)

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