F342844

General Info

Members Datasets Scaffolds Average Seq Length
230 171 212 384

Family's Representative Sequence

Representative Sequence 3300005563|Ga0068855_100256348|Ga0068855_1002563482
Length 419
Sequence MANRESPIPSPESRPLFVLVAGEASGDLLGADLIDGLRERFPDARFAGIGGPQMARRGMEIWHPLERLSVMGLVEVLRHLPALLRLRRDVLRRTLLARPSAFIGIDAPDFNLGLARRLKHAGVRTVHYVSPSVWAWREGRAATIGRSADRVLCLFPMEPAIYERHGVDARFVGHPLAARFPRQPDRDAARRALGLPGTARILALLPGSRLGEIRRLGRDFLEAAALLQREDPDLRIVAPMANAACRVEFERLAAAVLPARGHGAAAITLVDADLPGNGAGPLGADDVAGPLSRSQLALVAADAVLLASGTAALEAMLAKRPMVVAYRVAPLTYRLVKALRLLRTDVYSLPNILAGRPLVAERMQDQCTPQALHAALAPLLRARAPDPALLAEYARLHDALRAPPHAAAAAVAELSGASG

Samples

Sample ID Description Type Environment
1 2551306352 Acinetobacter sp. GG2 Isolate Rhizosphere
2 2639762793 Acinetobacter calcoaceticus GK1 Isolate Rhizosphere
3 2643221660 Methylibium sp. Root1272 Isolate Unclassified
4 2643221665 Acinetobacter sp. Root1280 Isolate Unclassified
5 2675903507 Acinetobacter calcoaceticus GK2 Isolate Unclassified
6 2744054655 Acinetobacter sp. BMW17 Isolate Unclassified
7 2773857761 Acinetobacter sp. 3664 Isolate Unclassified
8 2773857770 Acinetobacter sp. 3636 Isolate Unclassified
9 2881714928 Pseudidiomarina mangrovi ZQ330 Isolate Rhizosphere
10 2916699645 Acinetobacter ursingii M3 Isolate Unclassified
11 2919182534 Acinetobacter calcoaceticus 2589 Isolate Rhizosphere
12 2919506607 Acinetobacter sp. 3657 Isolate Unclassified
13 2928515477 Acinetobacter bereziniae 1375 Isolate Rhizosphere
14 2984568884 Acinetobacter baylyi SORGH_AS893 Isolate Aerial Root
15 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
16 3300005272 Switchgrass rhizosphere microbial communities from Buena Vista Grasslands Wildlife Area, Michigan, USA - BV2.1 v1 Metagenome Rhizosphere
17 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
18 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
19 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
20 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
21 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
22 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
23 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
24 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
25 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
26 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
27 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
28 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
29 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
30 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
31 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
32 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
33 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
34 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
35 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
36 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
37 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
38 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
39 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
40 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
41 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
42 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
43 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
46 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
47 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
48 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
49 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
50 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
51 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
52 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
53 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
54 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
55 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
56 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
57 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
58 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
59 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
60 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
61 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
62 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
63 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
64 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
65 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
66 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
98 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
99 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
100 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
102 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
103 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
104 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
105 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
106 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
107 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
108 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
109 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
110 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
111 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
112 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
113 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
114 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
115 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
116 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
117 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
118 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
119 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
120 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
121 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
122 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
123 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
124 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
125 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
126 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
127 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
128 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
129 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
130 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
131 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
132 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
133 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
134 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
135 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
136 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
137 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
138 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
139 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
140 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
141 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
142 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
143 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
144 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
145 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
146 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
147 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
148 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
150 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
151 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
152 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
153 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
154 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
155 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
156 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
157 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
158 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
159 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
160 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
161 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
162 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
163 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
164 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
165 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
166 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
167 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
168 8002745576 Marinomonas spartinae USM8 Isolate Rhizosphere
169 8033232454 Acinetobacter radioresistens SA188 Isolate Unclassified
170 8054357960 Idiomarina rhizosphaerae M1R2S28 Isolate Rhizosphere
171 8057160832 Larsenimonas rhizosphaerae GH2-1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.74
Metatranscriptomes 0.43
Isolates 7.83

Biome Distribution

Category Percentage (%)
Aerial Root 0.43
Bulb 0
Endosphere 0.87
Nodule 0
Rhizoplane 3.91
Rhizosphere 89.13
Stem 0
Stem Tuber 0
Unclassified 5.65

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0058692_1000003 3300003856 Bacteria 435295
2 Ga0065703_1000237 3300005272 Bacteria 34331
3 Ga0070658_10014342 3300005327 Bacteria 6358
4 Ga0070676_10028261 3300005328 Bacteria 3185
5 Ga0070670_100009078 3300005331 Bacteria 8497
6 Ga0070677_10015931 3300005333 Bacteria 2669
7 Ga0070666_10000609 3300005335 Bacteria 21522
8 Ga0070666_10081233 3300005335 Bacteria 2216
9 Ga0068868_100058881 3300005338 Bacteria 3037
10 Ga0070669_100015630 3300005353 Bacteria 5412
11 Ga0070669_100032651 3300005353 Bacteria 3760
12 Ga0070675_100014533 3300005354 Bacteria 6210
13 Ga0070671_100036029 3300005355 Bacteria 4102
14 Ga0070667_100229835 3300005367 Bacteria 1654
15 Ga0070663_100015906 3300005455 Bacteria 4870
16 Ga0070678_100004575 3300005456 Bacteria 7857
17 Ga0070662_100043999 3300005457 Bacteria 3198
18 Ga0070662_100161237 3300005457 Bacteria 1754
19 Ga0068867_100111294 3300005459 Bacteria 2104
20 Ga0068853_100188806 3300005539 Bacteria 1871
21 Ga0070672_100017525 3300005543 Bacteria 5158
22 Ga0070672_100039727 3300005543 Bacteria 3606
23 Ga0070665_100000326 3300005548 Bacteria 73416
24 Ga0070665_100011031 3300005548 Bacteria 9132
25 Ga0068855_100171391 3300005563 Bacteria 2458
26 Ga0068855_100256348 3300005563 Bacteria 1950
27 Ga0068854_100011547 3300005578 Bacteria 5758
28 Ga0068856_100033851 3300005614 Bacteria 5004
29 Ga0068856_100209929 3300005614 Bacteria 1962
30 Ga0068856_100399132 3300005614 Bacteria 1395
31 Ga0068852_100044337 3300005616 Bacteria 3776
32 Ga0068859_100392336 3300005617 Bacteria 1484
33 Ga0068851_10006960 3300005834 Bacteria 5184
34 Ga0068863_100199440 3300005841 Bacteria 1925
35 Ga0068858_100003022 3300005842 Bacteria 16876
36 Ga0068858_100103052 3300005842 Bacteria 2662
37 Ga0075429_100180329 3300006880 Bacteria 1851
38 Ga0068865_100143687 3300006881 Bacteria 1802
39 Ga0097620_100392378 3300006931 Bacteria 1484
40 Ga0105244_10006513 3300009036 Bacteria 7532
41 Ga0105244_10023733 3300009036 Bacteria 3359
42 Ga0105244_10023734 3300009036 Bacteria 3358
43 Ga0105244_10039903 3300009036 Bacteria 2441
44 Ga0105240_10018779 3300009093 Bacteria 9263
45 Ga0105240_10195116 3300009093 Bacteria 2378
46 Ga0105240_10274378 3300009093 Bacteria 1940
47 Ga0105245_10044061 3300009098 Bacteria 3982
48 Ga0105247_10000338 3300009101 Bacteria 40946
49 Ga0105243_10000005 3300009148 Bacteria 576265
50 Ga0105241_10117821 3300009174 Bacteria 2134
51 Ga0105248_10002249 3300009177 Bacteria 21375
52 Ga0105237_10014390 3300009545 Bacteria 8275
53 Ga0105237_10160240 3300009545 Bacteria 2248
54 Ga0105238_10009527 3300009551 Bacteria 9721
55 Ga0105238_10034232 3300009551 Bacteria 5169
56 Ga0105249_10042441 3300009553 Bacteria 4136
57 Ga0105239_10023095 3300010375 Bacteria 6854
58 Ga0105239_10023471 3300010375 Bacteria 6794
59 Ga0105239_10036946 3300010375 Bacteria 5359
60 Ga0105239_10096997 3300010375 Bacteria 3258
61 Ga0157371_10014969 3300013102 Bacteria 5834
62 Ga0157370_10011647 3300013104 Bacteria 9182
63 Ga0157370_10072898 3300013104 Bacteria 3240
64 Ga0157369_10000086 3300013105 Bacteria 128515
65 Ga0157369_10001294 3300013105 Bacteria 31084
66 Ga0157378_10000619 3300013297 Bacteria 33473
67 Ga0163162_10148380 3300013306 Bacteria 2462
68 Ga0157372_10214705 3300013307 Bacteria 2229
69 Ga0157372_10410016 3300013307 Bacteria 1579
70 Ga0163163_10000213 3300014325 Bacteria 60063
71 Ga0157376_10041452 3300014969 Bacteria 3769
72 Ga0157376_10229771 3300014969 Bacteria 1723
73 Ga0163161_10002792 3300017792 Bacteria 12381
74 Ga0163161_10009868 3300017792 Bacteria 6613
75 Ga0213872_10000003 3300021361 Bacteria 366948
76 Ga0213872_10000199 3300021361 Bacteria 53150
77 Ga0207656_10002795 3300025321 Bacteria 5932
78 Ga0207696_1026466 3300025711 Bacteria 1795
79 Ga0207655_1000910 3300025728 Bacteria 30777
80 Ga0207655_1000913 3300025728 Bacteria 30745
81 Ga0207655_1003929 3300025728 Bacteria 10778
82 Ga0207655_1004134 3300025728 Bacteria 10423
83 Ga0207655_1023847 3300025728 Bacteria 3018
84 Ga0207682_10027713 3300025893 Bacteria 2257
85 Ga0207710_10000148 3300025900 Bacteria 80016
86 Ga0207680_10000109 3300025903 Bacteria 37453
87 Ga0207680_10037835 3300025903 Bacteria 2788
88 Ga0207680_10094509 3300025903 Bacteria 1909
89 Ga0207647_10000858 3300025904 Bacteria 23572
90 Ga0207645_10033627 3300025907 Bacteria 3295
91 Ga0207654_10078899 3300025911 Bacteria 1976
92 Ga0207654_10155628 3300025911 Bacteria 1472
93 Ga0207695_10000864 3300025913 Bacteria 55428
94 Ga0207695_10006369 3300025913 Bacteria 15354
95 Ga0207695_10010743 3300025913 Bacteria 11171
96 Ga0207671_10002059 3300025914 Bacteria 22035
97 Ga0207649_10000780 3300025920 Bacteria 20666
98 Ga0207649_10109053 3300025920 Bacteria 1846
99 Ga0207681_10038269 3300025923 Bacteria 3177
100 Ga0207681_10221532 3300025923 Bacteria 1464
101 Ga0207694_10008268 3300025924 Bacteria 7866
102 Ga0207694_10010190 3300025924 Bacteria 7085
103 Ga0207644_10097494 3300025931 Bacteria 2202
104 Ga0207706_10000915 3300025933 Bacteria 30339
105 Ga0207706_10133875 3300025933 Bacteria 2180
106 Ga0207709_10000001 3300025935 Bacteria 2228154
107 Ga0207704_10023493 3300025938 Bacteria 3324
108 Ga0207704_10132816 3300025938 Bacteria 1727
109 Ga0207691_10033824 3300025940 Bacteria 4759
110 Ga0207691_10053719 3300025940 Bacteria 3677
111 Ga0207711_10002151 3300025941 Bacteria 17750
112 Ga0207667_10198538 3300025949 Bacteria 2058
113 Ga0207667_10198865 3300025949 Bacteria 2056
114 Ga0207712_10000340 3300025961 Bacteria 42379
115 Ga0207640_10001131 3300025981 Bacteria 14660
116 Ga0207658_10157981 3300025986 Bacteria 1855
117 Ga0207703_10004074 3300026035 Bacteria 12057
118 Ga0207703_10009925 3300026035 Bacteria 7469
119 Ga0207639_10000399 3300026041 Bacteria 29931
120 Ga0207639_10154130 3300026041 Bacteria 1928
121 Ga0207678_10018334 3300026067 Bacteria 6148
122 Ga0207702_10001298 3300026078 Bacteria 25025
123 Ga0207648_10102757 3300026089 Bacteria 2505
124 Ga0207674_10002226 3300026116 Bacteria 24560
125 Ga0207698_10038506 3300026142 Bacteria 3533
126 Ga0207698_10067024 3300026142 Bacteria 2829
127 Ga0209371_1000006 3300027312 Bacteria 1055642
128 Ga0209968_1000191 3300027526 Bacteria 10685
129 Ga0209966_1000004 3300027695 Bacteria 108133
130 Ga0268266_10000013 3300028379 Bacteria 649715
131 Ga0268256_1000007 3300030500 Bacteria 1055326
132 Ga0316575_10006930 3300031665 Unclassified 4102
133 Ga0316579_10005769 3300031691 Bacteria 5017
134 Ga0307413_10027066 3300031824 Bacteria 3171
135 Ga0307414_10179488 3300032004 Bacteria 1701
136 Ga0307411_10101663 3300032005 Bacteria 2035
137 Ga0316593_10003977 3300032168 Bacteria 3738
138 Ga0373924_0000941 3300035410 Bacteria 9198
139 Ga0373935_0026533 3300035692 Bacteria 3576
140 Ga0373937_0047441 3300036401 Bacteria 3930
141 Ga0316582_0018759 3300036647 Bacteria 4033
142 Ga0316581_0035738 3300037588 Bacteria 1506
143 Ga0436364_0662293 3300037853 Bacteria 3884
144 Ga0400483_002379 3300039062 Bacteria 3419
145 Ga0436361_0161338 3300039447 Bacteria 23900
146 Ga0436361_1124174 3300039447 Bacteria 21478
147 Ga0439439_0008538 3300041406 Bacteria 2423
148 Ga0451807_0348956 3300041486 Bacteria 1158
149 Ga0439449_0002535 3300042007 Bacteria 7141
150 Ga0451577_0002505 3300042876 Bacteria 21782
151 Ga0451577_0034436 3300042876 Bacteria 4564
152 Ga0451577_0082777 3300042876 Bacteria 2862
153 Ga0466969_0089161 3300044656 Bacteria 1463
154 Ga0466961_0063463 3300044693 Bacteria 2347
155 Ga0453684_0000712 3300044712 Bacteria 117905
156 Ga0453684_0002563 3300044712 Bacteria 43680
157 Ga0453684_0010263 3300044712 Bacteria 16039
158 Ga0453684_0039719 3300044712 Bacteria 6404
159 Ga0453684_0202573 3300044712 Bacteria 2312
160 Ga0466971_0017128 3300044719 Bacteria 3202
161 Ga0451576_0092714 3300045051 Bacteria 3141
162 Ga0451576_0136515 3300045051 Bacteria 2558
163 Ga0451576_0222700 3300045051 Bacteria 1970
164 Ga0495627_017061 3300046453 Bacteria 2475
165 Ga0495607_0077320 3300046501 Bacteria 1838
166 Ga0495628_0146231 3300046516 Bacteria 1802
167 Ga0495632_0008027 3300046519 Bacteria 6550
168 Ga0495663_0001860 3300046525 Bacteria 6505
169 Ga0495621_0003606 3300046539 Bacteria 4276
170 Ga0495634_0123461 3300046642 Bacteria 1657
171 Ga0495625_0185442 3300046660 Bacteria 1381
172 Ga0495661_0043259 3300046665 Bacteria 2770
173 Ga0495647_0010661 3300046681 Bacteria 3134
174 Ga0496104_0060544 3300048907 Bacteria 3587
175 Ga0496108_0053941 3300048911 Bacteria 3373
176 Ga0496108_0130516 3300048911 Bacteria 2160
177 Ga0496109_0037668 3300048912 Bacteria 4370
178 Ga0496110_0148548 3300048913 Bacteria 2121
179 Ga0496112_0024128 3300048915 Bacteria 5820
180 Ga0496113_0024436 3300048916 Bacteria 4295
181 Ga0496115_0000746 3300048918 Bacteria 23938
182 Ga0496118_0026353 3300048921 Bacteria 4955
183 Ga0496126_0000033 3300048929 Bacteria 368851
184 Ga0495682_0002831 3300049460 Bacteria 8002
185 Ga0501034_0000462 3300049571 Bacteria 67291
186 Ga0501036_0052250 3300049572 Bacteria 3461
187 Ga0501038_0000009 3300049574 Bacteria 190794
188 Ga0501040_0000004 3300049576 Bacteria 101867
189 Ga0501040_0178689 3300049576 Bacteria 1504
190 Ga0501042_0003966 3300049578 Bacteria 9368
191 Ga0501042_0037672 3300049578 Bacteria 3432
192 Ga0501042_0181419 3300049578 Bacteria 1519
193 Ga0501043_0018875 3300049579 Bacteria 5412
194 Ga0501046_0144784 3300049580 Bacteria 1795
195 Ga0501047_0000442 3300049581 Bacteria 45876
196 Ga0501048_0148855 3300049582 Bacteria 1656
197 Ga0501070_0047914 3300049586 Bacteria 3551
198 Ga0501073_0047348 3300049589 Bacteria 3022
199 Ga0501073_0086200 3300049589 Bacteria 2184
200 Ga0501074_0010259 3300049590 Bacteria 6798
201 Ga0501075_0048836 3300049591 Bacteria 3180
202 Ga0501080_0009098 3300049742 Bacteria 9040
203 Ga0501080_0019640 3300049742 Bacteria 6259
204 Ga0501035_0066051 3300049822 Bacteria 3211
205 Ga0501044_0000379 3300049823 Bacteria 55288
206 Ga0495601_0137335 3300053077 Bacteria 1594
207 Ga0500562_000105 3300053108 Bacteria 32012
208 Ga0500593_086609 3300053117 Bacteria 1333
209 Ga0501084_0207494 3300054114 Bacteria 1653
210 Ga0501082_0065593 3300060353 Bacteria 3127
211 Ga0466962_0021900 3300061719 Bacteria 3068
212 Ga0530510_0009214 3300061734 Bacteria 6919

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005457 Ga0070662_100161237 Ga0070662_1001612371 323
2 3300005563 Ga0068855_100171391 Ga0068855_1001713912 323
3 3300025933 Ga0207706_10133875 Ga0207706_101338752 323
4 3300009551 Ga0105238_10009527 Ga0105238_100095272 325
5 3300013105 Ga0157369_10000086 Ga0157369_1000008635 325
6 3300025913 Ga0207695_10006369 Ga0207695_100063698 325
7 3300025914 Ga0207671_10002059 Ga0207671_100020594 325
8 3300025924 Ga0207694_10008268 Ga0207694_100082686 325
9 3300026041 Ga0207639_10154130 Ga0207639_101541302 325
10 3300041486 Ga0451807_0348956 Ga0451807_0348956_13_1023 328
11 3300049590 Ga0501074_0010259 Ga0501074_0010259_41_1066 329
12 3300053117 Ga0500593_086609 Ga0500593_086609_19_1047 335
13 3300013297 Ga0157378_10000619 Ga0157378_1000061912 344
14 3300031824 Ga0307413_10027066 Ga0307413_100270661 348
15 3300032005 Ga0307411_10101663 Ga0307411_101016632 348
16 3300006881 Ga0068865_100143687 Ga0068865_1001436872 351
17 3300013104 Ga0157370_10072898 Ga0157370_100728982 351
18 3300013307 Ga0157372_10410016 Ga0157372_104100162 351
19 3300025938 Ga0207704_10132816 Ga0207704_101328162 351
20 3300025949 Ga0207667_10198538 Ga0207667_101985382 351
21 3300026116 Ga0207674_10002226 Ga0207674_1000222621 352
22 3300042876 Ga0451577_0002505 Ga0451577_0002505_430_1578 353
23 3300044712 Ga0453684_0000712 Ga0453684_0000712_12438_13571 353
24 3300005548 Ga0070665_100000326 Ga0070665_1000003268 354
25 3300005614 Ga0068856_100209929 Ga0068856_1002099291 354
26 3300005842 Ga0068858_100003022 Ga0068858_10000302211 354
27 3300013307 Ga0157372_10214705 Ga0157372_102147052 354
28 3300025911 Ga0207654_10155628 Ga0207654_101556281 354
29 3300025913 Ga0207695_10010743 Ga0207695_100107437 354
30 3300026035 Ga0207703_10004074 Ga0207703_100040747 354
31 3300026041 Ga0207639_10000399 Ga0207639_100003995 354
32 3300026142 Ga0207698_10067024 Ga0207698_100670242 354
33 3300028379 Ga0268266_10000013 Ga0268266_1000001317 354
34 3300009551 Ga0105238_10034232 Ga0105238_100342324 355
35 3300005328 Ga0070676_10028261 Ga0070676_100282614 357
36 3300005354 Ga0070675_100014533 Ga0070675_1000145333 357
37 3300005456 Ga0070678_100004575 Ga0070678_1000045756 357
38 3300005548 Ga0070665_100011031 Ga0070665_1000110314 357
39 3300025907 Ga0207645_10033627 Ga0207645_100336272 357
40 3300005327 Ga0070658_10014342 Ga0070658_100143424 358
41 3300005459 Ga0068867_100111294 Ga0068867_1001112942 358
42 3300025938 Ga0207704_10023493 Ga0207704_100234932 358
43 3300025940 Ga0207691_10033824 Ga0207691_100338242 358
44 3300026089 Ga0207648_10102757 Ga0207648_101027572 358
45 iso_pu_bacteria 2551306352 2552749223 363
46 iso_pu_bacteria 2919506607 2919507202 363
47 3300005616 Ga0068852_100044337 Ga0068852_1000443372 364
48 3300026142 Ga0207698_10038506 Ga0207698_100385062 364
49 3300027526 Ga0209968_1000191 Ga0209968_10001914 364
50 3300027695 Ga0209966_1000004 Ga0209966_100000440 364
51 3300044712 Ga0453684_0002563 Ga0453684_0002563_31697_32830 365
52 3300005539 Ga0068853_100188806 Ga0068853_1001888062 367
53 3300009093 Ga0105240_10018779 Ga0105240_100187796 367
54 3300009545 Ga0105237_10014390 Ga0105237_100143907 367
55 3300010375 Ga0105239_10036946 Ga0105239_100369462 367
56 3300013105 Ga0157369_10001294 Ga0157369_1000129413 367
57 3300014325 Ga0163163_10000213 Ga0163163_1000021324 367
58 3300025903 Ga0207680_10094509 Ga0207680_100945092 367
59 3300025913 Ga0207695_10000864 Ga0207695_1000086416 367
60 3300025920 Ga0207649_10000780 Ga0207649_1000078011 367
61 3300025935 Ga0207709_10000001 Ga0207709_100000011160 367
62 3300005335 Ga0070666_10000609 Ga0070666_1000060911 368
63 3300025903 Ga0207680_10000109 Ga0207680_100001095 368
64 iso_pu_bacteria 8057160832 8057162612 368
65 3300010375 Ga0105239_10023095 Ga0105239_100230954 369
66 3300014969 Ga0157376_10041452 Ga0157376_100414524 369
67 3300021361 Ga0213872_10000199 Ga0213872_1000019942 369
68 3300039447 Ga0436361_0161338 Ga0436361_0161338_5564_6694 369
69 3300048918 Ga0496115_0000746 Ga0496115_0000746_11659_12819 369
70 3300048921 Ga0496118_0026353 Ga0496118_0026353_2671_3831 369
71 3300048929 Ga0496126_0000033 Ga0496126_0000033_356015_357175 369
72 3300005614 Ga0068856_100033851 Ga0068856_1000338512 370
73 3300010375 Ga0105239_10023471 Ga0105239_100234714 370
74 3300026078 Ga0207702_10001298 Ga0207702_100012986 370
75 3300005355 Ga0070671_100036029 Ga0070671_1000360292 371
76 3300041406 Ga0439439_0008538 Ga0439439_0008538_337_1455 371
77 3300042007 Ga0439449_0002535 Ga0439449_0002535_708_1826 371
78 3300045051 Ga0451576_0222700 Ga0451576_0222700_423_1541 371
79 3300048907 Ga0496104_0060544 Ga0496104_0060544_1603_2721 371
80 3300048911 Ga0496108_0053941 Ga0496108_0053941_1676_2794 371
81 3300048911 Ga0496108_0130516 Ga0496108_0130516_885_2030 371
82 3300048912 Ga0496109_0037668 Ga0496109_0037668_2436_3554 371
83 3300048913 Ga0496110_0148548 Ga0496110_0148548_307_1425 371
84 3300048915 Ga0496112_0024128 Ga0496112_0024128_591_1709 371
85 3300048916 Ga0496113_0024436 Ga0496113_0024436_1717_2835 371
86 iso_pu_bacteria 2643221660 2644337648 371
87 3300005335 Ga0070666_10081233 Ga0070666_100812332 372
88 3300005367 Ga0070667_100229835 Ga0070667_1002298352 372
89 3300005455 Ga0070663_100015906 Ga0070663_1000159063 372
90 3300005457 Ga0070662_100043999 Ga0070662_1000439992 372
91 3300005578 Ga0068854_100011547 Ga0068854_1000115475 372
92 3300005834 Ga0068851_10006960 Ga0068851_100069605 372
93 3300009093 Ga0105240_10274378 Ga0105240_102743782 372
94 3300009545 Ga0105237_10160240 Ga0105237_101602402 372
95 3300025321 Ga0207656_10002795 Ga0207656_100027952 372
96 3300025903 Ga0207680_10037835 Ga0207680_100378352 372
97 3300025904 Ga0207647_10000858 Ga0207647_100008585 372
98 3300025920 Ga0207649_10109053 Ga0207649_101090532 372
99 3300025924 Ga0207694_10010190 Ga0207694_100101906 372
100 3300025933 Ga0207706_10000915 Ga0207706_1000091516 372
101 3300025961 Ga0207712_10000340 Ga0207712_1000034033 372
102 3300025981 Ga0207640_10001131 Ga0207640_100011319 372
103 3300025986 Ga0207658_10157981 Ga0207658_101579812 372
104 3300026067 Ga0207678_10018334 Ga0207678_100183345 372
105 3300049571 Ga0501034_0000462 Ga0501034_0000462_6863_8038 372
106 3300049572 Ga0501036_0052250 Ga0501036_0052250_998_2173 372
107 3300049579 Ga0501043_0018875 Ga0501043_0018875_1588_2763 372
108 3300049580 Ga0501046_0144784 Ga0501046_0144784_422_1597 372
109 3300049581 Ga0501047_0000442 Ga0501047_0000442_9786_10961 372
110 3300049586 Ga0501070_0047914 Ga0501070_0047914_1421_2599 372
111 3300049589 Ga0501073_0047348 Ga0501073_0047348_559_1734 372
112 3300049589 Ga0501073_0086200 Ga0501073_0086200_83_1261 372
113 3300049742 Ga0501080_0009098 Ga0501080_0009098_981_2159 372
114 3300049742 Ga0501080_0019640 Ga0501080_0019640_1548_2723 372
115 3300054114 Ga0501084_0207494 Ga0501084_0207494_263_1441 372
116 3300060353 Ga0501082_0065593 Ga0501082_0065593_1394_2572 372
117 3300049576 Ga0501040_0000004 Ga0501040_0000004_69849_70991 373
118 3300049578 Ga0501042_0003966 Ga0501042_0003966_5392_6534 373
119 3300049578 Ga0501042_0037672 Ga0501042_0037672_13_1155 373
120 3300006880 Ga0075429_100180329 Ga0075429_1001803292 374
121 3300021361 Ga0213872_10000003 Ga0213872_10000003106 374
122 3300031691 Ga0316579_10005769 Ga0316579_100057696 374
123 3300032168 Ga0316593_10003977 Ga0316593_100039774 374
124 3300036647 Ga0316582_0018759 Ga0316582_0018759_2782_3933 374
125 3300037588 Ga0316581_0035738 Ga0316581_0035738_290_1441 374
126 3300039447 Ga0436361_1124174 Ga0436361_1124174_7825_8955 374
127 3300042876 Ga0451577_0034436 Ga0451577_0034436_2487_3620 374
128 3300044712 Ga0453684_0039719 Ga0453684_0039719_1550_2683 374
129 3300044712 Ga0453684_0202573 Ga0453684_0202573_413_1546 374
130 3300045051 Ga0451576_0092714 Ga0451576_0092714_1080_2213 374
131 3300049576 Ga0501040_0178689 Ga0501040_0178689_153_1286 374
132 3300049578 Ga0501042_0181419 Ga0501042_0181419_289_1422 374
133 iso_pu_bacteria 8002745576 8002745878 374
134 iso_pu_bacteria 8054357960 8054359685 374
135 3300005333 Ga0070677_10015931 Ga0070677_100159313 375
136 3300005353 Ga0070669_100032651 Ga0070669_1000326514 375
137 3300005543 Ga0070672_100039727 Ga0070672_1000397273 375
138 3300025893 Ga0207682_10027713 Ga0207682_100277132 375
139 3300025923 Ga0207681_10221532 Ga0207681_102215321 375
140 3300025940 Ga0207691_10053719 Ga0207691_100537192 375
141 3300042876 Ga0451577_0082777 Ga0451577_0082777_193_1329 375
142 3300044656 Ga0466969_0089161 Ga0466969_0089161_65_1204 375
143 3300044693 Ga0466961_0063463 Ga0466961_0063463_1148_2287 375
144 3300044719 Ga0466971_0017128 Ga0466971_0017128_1250_2389 375
145 3300045051 Ga0451576_0136515 Ga0451576_0136515_120_1265 375
146 3300046539 Ga0495621_0003606 Ga0495621_0003606_553_1683 375
147 3300061719 Ga0466962_0021900 Ga0466962_0021900_1057_2196 375
148 3300061734 Ga0530510_0009214 Ga0530510_0009214_230_1375 375
149 3300005617 Ga0068859_100392336 Ga0068859_1003923362 376
150 3300006931 Ga0097620_100392378 Ga0097620_1003923782 376
151 3300031665 Ga0316575_10006930 Ga0316575_100069302 376
152 3300032004 Ga0307414_10179488 Ga0307414_101794882 376
153 3300039062 Ga0400483_002379 Ga0400483_002379_2251_3390 376
154 3300044712 Ga0453684_0010263 Ga0453684_0010263_30_1187 376
155 3300049574 Ga0501038_0000009 Ga0501038_0000009_21406_22596 376
156 3300005563 Ga0068855_100256348 Ga0068855_1002563482 377
157 iso_pu_bacteria 2881714928 2881715377 377
158 3300053108 Ga0500562_000105 Ga0500562_000105_19175_20335 378
159 3300005338 Ga0068868_100058881 Ga0068868_1000588813 379
160 3300009098 Ga0105245_10044061 Ga0105245_100440614 379
161 3300009174 Ga0105241_10117821 Ga0105241_101178212 379
162 3300014969 Ga0157376_10229771 Ga0157376_102297712 379
163 3300025911 Ga0207654_10078899 Ga0207654_100788992 379
164 3300037853 Ga0436364_0662293 Ga0436364_0662293_659_1801 379
165 3300049582 Ga0501048_0148855 Ga0501048_0148855_324_1469 379
166 3300049591 Ga0501075_0048836 Ga0501075_0048836_732_1877 379
167 3300005331 Ga0070670_100009078 Ga0070670_1000090782 380
168 3300005543 Ga0070672_100017525 Ga0070672_1000175254 380
169 3300005614 Ga0068856_100399132 Ga0068856_1003991322 380
170 3300005841 Ga0068863_100199440 Ga0068863_1001994402 380
171 3300005842 Ga0068858_100103052 Ga0068858_1001030522 380
172 3300009177 Ga0105248_10002249 Ga0105248_100022497 380
173 3300013306 Ga0163162_10148380 Ga0163162_101483802 380
174 3300025931 Ga0207644_10097494 Ga0207644_100974942 380
175 3300025941 Ga0207711_10002151 Ga0207711_100021514 380
176 3300025949 Ga0207667_10198865 Ga0207667_101988652 380
177 3300026035 Ga0207703_10009925 Ga0207703_100099253 380
178 3300035692 Ga0373935_0026533 Ga0373935_0026533_2296_3441 380
179 3300036401 Ga0373937_0047441 Ga0373937_0047441_86_1231 380
180 3300046516 Ga0495628_0146231 Ga0495628_0146231_135_1280 380
181 3300046681 Ga0495647_0010661 Ga0495647_0010661_1963_3108 380
182 3300049822 Ga0501035_0066051 Ga0501035_0066051_1121_2296 380
183 3300049823 Ga0501044_0000379 Ga0501044_0000379_15698_16873 380
184 3300053077 Ga0495601_0137335 Ga0495601_0137335_421_1566 380
185 3300035410 Ga0373924_0000941 Ga0373924_0000941_350_1531 381
186 3300046642 Ga0495634_0123461 Ga0495634_0123461_150_1331 381
187 3300010375 Ga0105239_10096997 Ga0105239_100969973 382
188 iso_pu_bacteria 2744054655 2745162117 386
189 iso_pu_bacteria 2984568884 2984570125 386
190 iso_pu_bacteria 2639762793 2640734173 387
191 iso_pu_bacteria 2643221665 2644361685 387
192 iso_pu_bacteria 2675903507 2678231147 387
193 iso_pu_bacteria 2773857761 2774388305 387
194 iso_pu_bacteria 2773857770 2774437507 387
195 iso_pu_bacteria 2916699645 2916702116 387
196 iso_pu_bacteria 2919182534 2919184057 387
197 iso_pu_bacteria 2928515477 2928517069 387
198 iso_pu_bacteria 8033232454 8033234491 387
199 3300003856 Ga0058692_1000003 Ga0058692_1000003193 391
200 3300005272 Ga0065703_1000237 Ga0065703_100023713 391
201 3300005353 Ga0070669_100015630 Ga0070669_1000156304 391
202 3300009036 Ga0105244_10006513 Ga0105244_100065135 391
203 3300009036 Ga0105244_10023733 Ga0105244_100237332 391
204 3300009036 Ga0105244_10023734 Ga0105244_100237342 391
205 3300009036 Ga0105244_10039903 Ga0105244_100399032 391
206 3300009093 Ga0105240_10195116 Ga0105240_101951162 391
207 3300009101 Ga0105247_10000338 Ga0105247_1000033829 391
208 3300009148 Ga0105243_10000005 Ga0105243_10000005267 391
209 3300009553 Ga0105249_10042441 Ga0105249_100424412 391
210 3300013102 Ga0157371_10014969 Ga0157371_100149696 391
211 3300013104 Ga0157370_10011647 Ga0157370_100116475 391
212 3300017792 Ga0163161_10002792 Ga0163161_100027927 391
213 3300017792 Ga0163161_10009868 Ga0163161_100098685 391
214 3300025711 Ga0207696_1026466 Ga0207696_10264662 391
215 3300025728 Ga0207655_1000910 Ga0207655_100091013 391
216 3300025728 Ga0207655_1000913 Ga0207655_100091316 391
217 3300025728 Ga0207655_1003929 Ga0207655_10039298 391
218 3300025728 Ga0207655_1004134 Ga0207655_10041344 391
219 3300025728 Ga0207655_1023847 Ga0207655_10238473 391
220 3300025900 Ga0207710_10000148 Ga0207710_1000014862 391
221 3300025923 Ga0207681_10038269 Ga0207681_100382691 391
222 3300027312 Ga0209371_1000006 Ga0209371_1000006312 391
223 3300030500 Ga0268256_1000007 Ga0268256_1000007312 391
224 3300046453 Ga0495627_017061 Ga0495627_017061_597_1772 391
225 3300046501 Ga0495607_0077320 Ga0495607_0077320_63_1238 391
226 3300046519 Ga0495632_0008027 Ga0495632_0008027_4961_6142 391
227 3300046525 Ga0495663_0001860 Ga0495663_0001860_643_1818 391
228 3300046660 Ga0495625_0185442 Ga0495625_0185442_147_1343 391
229 3300046665 Ga0495661_0043259 Ga0495661_0043259_941_2116 391
230 3300049460 Ga0495682_0002831 Ga0495682_0002831_6569_7744 391

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02684

LpxB

Lipid-A-disaccharide synthetase

17

265

0.98

PF02684

LpxB

Lipid-A-disaccharide synthetase

290

388

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
5w8s-assembly1.cif.gz_A-2 lipid a disaccharide synthase (lpxb)-7 solubilizing mutations 0.735 4 387
5w8n-assembly1.cif.gz_A-2 lipid a disaccharide synthase (lpxb)-6 solubilizing mutations 0.735 3 387
5w8x-assembly1.cif.gz_A-2 lipid a disaccharide synthase (lpxb)-7 solubilizing mutations-bound to udp 0.7323 4 387
5w8s-assembly1.cif.gz_A-2 lipid a disaccharide synthase (lpxb)-7 solubilizing mutations 0.7275 4 387
5w8n-assembly1.cif.gz_A-2 lipid a disaccharide synthase (lpxb)-6 solubilizing mutations 0.7275 3 387
ID Description Score Start End Superfamily
af_P10441_9_377_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9324 9 373 3.40.50.2000
af_P10441_9_377_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8987 9 373 3.40.50.2000
af_F4IF99_42_436_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.7661 9 383 3.40.50.2000
1v4vB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.7411 187 362 3.40.50.2000
af_F4IF99_42_436_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.7369 9 383 3.40.50.2000
ID Description Score Start End GO Terms
AF-A0A2T5QGA8-F1-model_v4 deleted 0.9743 1 391
AF-W7QHE0-F1-model_v4 Lipid-A-disaccharide synthase (EC 2.4.1.182) 0.9618 5 244 GO:0005543
GO:0008915
GO:0009245
GO:0016020
AF-A0A850QNL0-F1-model_v4 Lipid-A-disaccharide synthase (EC 2.4.1.182) 0.9597 3 156 GO:0005543
GO:0008915
GO:0009245
GO:0016020
AF-W7Q2N2-F1-model_v4 Lipid-A-disaccharide synthase (EC 2.4.1.182) 0.9568 5 251 GO:0005543
GO:0008915
GO:0009245
GO:0016020
AF-C1DST3-F1-model_v4 Lipid-A-disaccharide synthase (EC 2.4.1.182) 0.9529 4 389 GO:0005543
GO:0008915
GO:0009245
GO:0016020

Feature Viewer

pLDDT pTM Quality
89.46 0.82 High
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Predicted Structure (AlphaFold2)

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