F342540

General Info

Members Datasets Scaffolds Average Seq Length
229 159 458 352

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2866065130|2866067649
Length 403
Sequence HPSAPPGTSTQQGAQTHQGTSTQQGAQTHQGTSTQQGAQTHQGTPAQQSVTAQHGGPVHHESVLLDEPSTADLRAKVTQAWQEFARALADRLADLPPGAHVELTLDPTASGTDDAVYSVGVDIEADGRFAARAVGNAALPQGHRLDRAAVADMVALGWSPPGVVEGSGDQFGLHCVAGERTRLAALLSRTLRDIYGAPHPAFLVYLIEDADGEPLPGPPLGTARGGSDLVREIETELEEALAVAGADGETEVLELADRVRTVVSTMLRSDSDRVQVDSDGDINIRAGSAMVFVRVRDNPPLVDVFSPVLTEVEPTERLYVKLSELTNRMPIGRLYCADDTVWASIPVFGRNFQPTHLMLAVQVMTGLADELDDRLHGEFGGKRFFGEGDKPVRRGEHRTGMYL

Samples

Sample ID Description Type Environment
1 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
16 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
19 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
20 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
26 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
27 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
28 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
29 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
30 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
31 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
32 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
35 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
41 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
42 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
43 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
65 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
68 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
69 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
70 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
71 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
72 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
73 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
74 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
75 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
76 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
77 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
78 3300031889 Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Metagenome Rhizosphere
79 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
80 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
81 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
82 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
83 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
84 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
85 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
86 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
87 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
88 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
89 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
90 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
91 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
92 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
93 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
94 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
95 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
96 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
97 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
98 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
99 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
100 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
101 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
102 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
103 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
104 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
105 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
106 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
107 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
109 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
110 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
111 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
112 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
113 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
114 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
115 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
116 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
117 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
118 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
119 3300053143 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 endosphere Metagenome Endosphere
120 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
121 2501939600 Micromonospora sp. L5 Isolate Unclassified
122 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
123 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
124 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
125 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
126 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
127 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
128 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
129 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
130 2855683550 Micromonospora sp. RP3T Isolate Unclassified
131 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
132 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
133 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
134 2858868258 Micromonospora sp. MH33 Isolate Unclassified
135 2858882152 Micromonospora noduli MED15 Isolate Nodule
136 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
137 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
138 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
139 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
140 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
141 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
142 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
143 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
144 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
145 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
146 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
147 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
148 2902582711 Micromonospora sp. AP08 Isolate Unclassified
149 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
150 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
151 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
152 649633069 Micromonospora sp. L5 Isolate Unclassified
153 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
154 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
155 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
156 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
157 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
158 8054734606 Micromonospora hortensis NIE111 Isolate Nodule
159 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 82.1
Metatranscriptomes 0.44
Isolates 17.47

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.18
Nodule 2.62
Rhizoplane 3.93
Rhizosphere 69.87
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10016420 3300005327 Bacteria 5924
2 Ga0070683_100021978 3300005329 Bacteria 5696
3 Ga0070670_100064242 3300005331 Bacteria 3150
4 Ga0068869_100011354 3300005334 Bacteria 5838
5 Ga0070680_100089668 3300005336 Bacteria 2544
6 Ga0070682_100024557 3300005337 Bacteria 3588
7 Ga0070661_100124139 3300005344 Bacteria 1936
8 Ga0070661_100173546 3300005344 Bacteria 1638
9 Ga0070668_100000635 3300005347 Bacteria 23621
10 Ga0070668_100056577 3300005347 Bacteria 3029
11 Ga0070659_100026873 3300005366 Bacteria 4430
12 Ga0070667_100031360 3300005367 Bacteria 4433
13 Ga0070709_10072076 3300005434 Bacteria 2232
14 Ga0070714_100297085 3300005435 Bacteria 1505
15 Ga0070700_100030523 3300005441 Bacteria 3222
16 Ga0070663_100004574 3300005455 Bacteria 8148
17 Ga0070662_100015655 3300005457 Bacteria 5084
18 Ga0070681_10100568 3300005458 Bacteria 2837
19 Ga0070681_10295907 3300005458 Bacteria 1529
20 Ga0070684_100022399 3300005535 Bacteria 5269
21 Ga0070684_100170310 3300005535 Bacteria 1978
22 Ga0070664_100001914 3300005564 Bacteria 16716
23 Ga0070664_100025130 3300005564 Bacteria 4935
24 Ga0068857_100075132 3300005577 Bacteria 3013
25 Ga0068857_100082235 3300005577 Bacteria 2876
26 Ga0070702_100042145 3300005615 Bacteria 2565
27 Ga0068852_100037142 3300005616 Bacteria 4082
28 Ga0068864_100003372 3300005618 Bacteria 13209
29 Ga0068864_100259459 3300005618 Bacteria 1616
30 Ga0068863_100057451 3300005841 Bacteria 3682
31 Ga0068860_100053458 3300005843 Bacteria 3840
32 Ga0068862_100032176 3300005844 Bacteria 4431
33 Ga0068862_100048599 3300005844 Bacteria 3622
34 Ga0081540_1008080 3300005983 Bacteria 7392
35 Ga0081540_1020671 3300005983 Bacteria 3949
36 Ga0081539_10000070 3300005985 Bacteria 235651
37 Ga0081539_10001374 3300005985 Bacteria 42092
38 Ga0081539_10001984 3300005985 Bacteria 31132
39 Ga0081539_10005909 3300005985 Bacteria 12096
40 Ga0075428_100001921 3300006844 Bacteria 22302
41 Ga0075428_100032804 3300006844 Bacteria 5734
42 Ga0075430_100001886 3300006846 Bacteria 17168
43 Ga0075430_100003263 3300006846 Bacteria 13592
44 Ga0075431_100081804 3300006847 Bacteria 3334
45 Ga0075431_100146278 3300006847 Bacteria 2435
46 Ga0075429_100010214 3300006880 Bacteria 8129
47 Ga0111539_10006312 3300009094 Bacteria 15295
48 Ga0105245_10096366 3300009098 Bacteria 2730
49 Ga0105247_10152075 3300009101 Bacteria 1526
50 Ga0114129_10000905 3300009147 Bacteria 38592
51 Ga0114129_10005136 3300009147 Bacteria 18421
52 Ga0114129_10009909 3300009147 Bacteria 13584
53 Ga0105239_10079476 3300010375 Bacteria 3609
54 Ga0157369_10003796 3300013105 Bacteria 17954
55 Ga0163162_10512823 3300013306 Bacteria 1329
56 Ga0157372_10150606 3300013307 Bacteria 2685
57 Ga0163163_10024372 3300014325 Bacteria 5758
58 Ga0163163_10098794 3300014325 Bacteria 2940
59 Ga0163163_10341298 3300014325 Bacteria 1553
60 Ga0157377_10006675 3300014745 Bacteria 5521
61 Ga0157379_10154826 3300014968 Bacteria 2067
62 Ga0207705_10056261 3300025909 Bacteria 2836
63 Ga0207707_10033350 3300025912 Bacteria 4506
64 Ga0207649_10078767 3300025920 Bacteria 2127
65 Ga0207649_10123812 3300025920 Bacteria 1747
66 Ga0207681_10252588 3300025923 Bacteria 1377
67 Ga0207650_10041590 3300025925 Bacteria 3369
68 Ga0207659_10028917 3300025926 Bacteria 3771
69 Ga0207690_10178805 3300025932 Bacteria 1596
70 Ga0207706_10016094 3300025933 Bacteria 6758
71 Ga0207689_10005638 3300025942 Bacteria 11153
72 Ga0207689_10098786 3300025942 Bacteria 2398
73 Ga0207661_10081427 3300025944 Bacteria 2674
74 Ga0207679_10008501 3300025945 Bacteria 6542
75 Ga0207679_10100516 3300025945 Bacteria 2260
76 Ga0207668_10001042 3300025972 Bacteria 16562
77 Ga0207668_10057571 3300025972 Bacteria 2712
78 Ga0207677_10082767 3300026023 Bacteria 2307
79 Ga0207703_10087231 3300026035 Bacteria 2616
80 Ga0207678_10005740 3300026067 Bacteria 11077
81 Ga0207708_10021341 3300026075 Bacteria 4883
82 Ga0207702_10251814 3300026078 Bacteria 1659
83 Ga0207641_10044419 3300026088 Bacteria 3737
84 Ga0207674_10005626 3300026116 Bacteria 14857
85 Ga0207674_10007024 3300026116 Bacteria 13166
86 Ga0207675_100207841 3300026118 Bacteria 1882
87 Ga0207683_10348053 3300026121 Bacteria 1360
88 Ga0207428_10093768 3300027907 Bacteria 2328
89 Ga0268265_10126773 3300028380 Bacteria 2114
90 Ga0268264_10346817 3300028381 Bacteria 1412
91 Ga0307517_10058142 3300028786 Bacteria 3732
92 Ga0307515_10000454 3300028794 Bacteria 97728
93 Ga0307515_10004739 3300028794 Bacteria 27867
94 Ga0307515_10007075 3300028794 Bacteria 22286
95 Ga0307515_10016184 3300028794 Bacteria 13676
96 Ga0307512_10002245 3300030522 Bacteria 25098
97 Ga0307512_10006412 3300030522 Bacteria 11920
98 Ga0265328_10010204 3300031239 Bacteria 3789
99 Ga0307513_10002908 3300031456 Bacteria 23416
100 Ga0307513_10100070 3300031456 Bacteria 2925
101 Ga0307513_10121321 3300031456 Bacteria 2581
102 Ga0307513_10123985 3300031456 Bacteria 2544
103 Ga0307509_10057413 3300031507 Bacteria 4127
104 Ga0307408_100146867 3300031548 Bacteria 1857
105 Ga0307408_100272161 3300031548 Bacteria 1407
106 Ga0307508_10001533 3300031616 Bacteria 25846
107 Ga0307508_10009322 3300031616 Bacteria 9032
108 Ga0307508_10016868 3300031616 Bacteria 6645
109 Ga0307508_10243786 3300031616 Bacteria 1394
110 Ga0307516_10000528 3300031730 Bacteria 51172
111 Ga0307516_10030566 3300031730 Bacteria 5434
112 Ga0307516_10056272 3300031730 Bacteria 3835
113 Ga0307516_10145622 3300031730 Bacteria 2135
114 Ga0307405_10185258 3300031731 Bacteria 1498
115 Ga0307405_10221587 3300031731 Bacteria 1388
116 Ga0307410_10015806 3300031852 Bacteria 4485
117 Ga0307410_10084829 3300031852 Bacteria 2234
118 Ga0326468_10000127 3300031889 Bacteria 7104
119 Ga0307406_10022870 3300031901 Bacteria 3713
120 Ga0307406_10059803 3300031901 Bacteria 2454
121 Ga0307406_10143275 3300031901 Bacteria 1695
122 Ga0307407_10009492 3300031903 Bacteria 4536
123 Ga0307407_10091168 3300031903 Bacteria 1868
124 Ga0307412_10057372 3300031911 Bacteria 2599
125 Ga0307412_10235649 3300031911 Bacteria 1412
126 Ga0307409_100000518 3300031995 Bacteria 16635
127 Ga0307409_100004855 3300031995 Bacteria 7637
128 Ga0307409_100434892 3300031995 Bacteria 1262
129 Ga0307416_100004157 3300032002 Bacteria 8675
130 Ga0307416_100017497 3300032002 Bacteria 5019
131 Ga0307416_100145180 3300032002 Bacteria 2165
132 Ga0307416_100183729 3300032002 Bacteria 1963
133 Ga0307416_100228523 3300032002 Bacteria 1791
134 Ga0307416_100339148 3300032002 Bacteria 1515
135 Ga0307415_100000009 3300032126 Bacteria 90122
136 Ga0307415_100003080 3300032126 Bacteria 8418
137 Ga0307415_100022362 3300032126 Bacteria 3900
138 Ga0307415_100081961 3300032126 Bacteria 2306
139 Ga0307415_100109997 3300032126 Bacteria 2042
140 Ga0307415_100122161 3300032126 Bacteria 1955
141 Ga0307415_100153954 3300032126 Bacteria 1773
142 Ga0316593_10058780 3300032168 Bacteria 1311
143 Ga0373951_0000134 3300035091 Bacteria 28118
144 Ga0373943_0123728 3300035170 Bacteria 1377
145 Ga0373955_0018685 3300035172 Bacteria 3453
146 Ga0373962_0022206 3300035242 Bacteria 1680
147 Ga0373935_0077510 3300035692 Bacteria 2154
148 Ga0373935_0162528 3300035692 Bacteria 1523
149 Ga0395899_0016164 3300037312 Bacteria 5688
150 Ga0395899_0194147 3300037312 Bacteria 1419
151 Ga0395900_0016042 3300037418 Bacteria 7633
152 Ga0395900_0089244 3300037418 Bacteria 3169
153 Ga0395898_0019954 3300037466 Bacteria 6816
154 Ga0395898_0232450 3300037466 Bacteria 1758
155 Ga0395905_0034236 3300037471 Bacteria 4769
156 Ga0395901_0005813 3300038443 Bacteria 12492
157 Ga0395901_0015038 3300038443 Bacteria 7869
158 Ga0451853_0662098 3300041512 Bacteria 5755
159 Ga0495638_0072071 3300046460 Bacteria 2112
160 Ga0495632_0071467 3300046519 Bacteria 1667
161 Ga0495581_0184692 3300047315 Bacteria 1220
162 Ga0496104_0022910 3300048907 Bacteria 5738
163 Ga0496105_0002297 3300048908 Bacteria 13868
164 Ga0496108_0000247 3300048911 Bacteria 48233
165 Ga0496108_0056797 3300048911 Bacteria 3289
166 Ga0496109_0009011 3300048912 Bacteria 8499
167 Ga0496110_0003471 3300048913 Bacteria 12088
168 Ga0496112_0013780 3300048915 Bacteria 7477
169 Ga0496112_0439094 3300048915 Bacteria 1243
170 Ga0496113_0012880 3300048916 Bacteria 5639
171 Ga0501047_0003591 3300049581 Bacteria 14639
172 Ga0501044_0220949 3300049823 Bacteria 1845
173 nmdc:mga05p37_816467_c1 3300050507 Bacteria 1018
174 nmdc:mga05p37_9206_c1 3300050507 Bacteria 11671
175 nmdc:mga09592_254979_c1 3300050508 Bacteria 1521
176 nmdc:mga09592_27_c1 3300050508 Bacteria 84251
177 nmdc:mga0qj67_1991_c1 3300050509 Bacteria 14543
178 nmdc:mga0qj67_24_c1 3300050509 Bacteria 106844
179 nmdc:mga0qj67_27700_c1 3300050509 Bacteria 4394
180 nmdc:mga06r32_226_c2 3300050510 Bacteria 42893
181 nmdc:mga06r32_58753_c1 3300050510 Bacteria 3697
182 nmdc:mga06r32_76810_c1 3300050510 Bacteria 3243
183 nmdc:mga08y16_4881_c1 3300050511 Bacteria 14005
184 nmdc:mga0n895_552477_c1 3300050512 Bacteria 1157
185 Ga0500651_0010425 3300053093 Bacteria 5570
186 Ga0500641_0025023 3300053096 Bacteria 2307
187 Ga0500650_0042915 3300053098 Bacteria 2090
188 Ga0500652_053490 3300053131 Bacteria 1652
189 Ga0500579_069041 3300053143 Bacteria 2050
190 2866067649 2866065130 Bacteria 6518152
191 2501943705 2501939600 Bacteria 6907073
192 2623585711 2622736626 Bacteria 7181580
193 2676482946 2675903059 Bacteria 8644972
194 2753269682 2751185782 Bacteria 11227053
195 2772642884 2772190715 Bacteria 6959372
196 2831938134 2831935698 Bacteria 5963223
197 2832006881 2832004796 Bacteria 6538017
198 2855674161 2855670206 Bacteria 7120389
199 2855679818 2855676851 Bacteria 7063653
200 2855689835 2855683550 Bacteria 7134265
201 2856859602 2856858025 Bacteria 7255264
202 2857290814 2857288857 Bacteria 7189066
203 2858853792 2858848962 Bacteria 6963058
204 2858874342 2858868258 Bacteria 7683772
205 2858885185 2858882152 Bacteria 7230291
206 2858893232 2858888857 Bacteria 7060307
207 2858901916 2858895516 Bacteria 7378898
208 2858904968 2858902515 Bacteria 7086037
209 2867307934 2867302475 Bacteria 7087181
210 2867318674 2867312974 Bacteria 7058875
211 2867324012 2867319477 Bacteria 7069771
212 2867509829 2867507094 Bacteria 6506033
213 2869053264 2869048445 Bacteria 6875584
214 2869064171 2869061728 Bacteria 7112407
215 2869071248 2869068681 Bacteria 7205615
216 2880494527 2880489317 Bacteria 7096270
217 2880497780 2880495981 Bacteria 7340502
218 2902588469 2902582711 Bacteria 6187705
219 2929226354 2929219909 Bacteria 6984360
220 2929233051 2929226422 Bacteria 7248583
221 2996222869 2996221748 Bacteria 6799777
222 649816310 649633069 Bacteria 6962533
223 8003834345 8003830390 Bacteria 6541657
224 8003858056 8003856774 Bacteria 7675274
225 8003876481 8003870546 Bacteria 7396674
226 8054709635 8054704163 Bacteria 7247792
227 8054729577 8054727385 Bacteria 7558670
228 8054740421 8054734606 Bacteria 6947278
229 8055413260 8055412473 Bacteria 6257500
230 Ga0070658_10016420
231 Ga0070683_100021978
232 Ga0070670_100064242
233 Ga0068869_100011354
234 Ga0070680_100089668
235 Ga0070682_100024557
236 Ga0070661_100124139
237 Ga0070661_100173546
238 Ga0070668_100000635
239 Ga0070668_100056577
240 Ga0070659_100026873
241 Ga0070667_100031360
242 Ga0070709_10072076
243 Ga0070714_100297085
244 Ga0070700_100030523
245 Ga0070663_100004574
246 Ga0070662_100015655
247 Ga0070681_10100568
248 Ga0070681_10295907
249 Ga0070684_100022399
250 Ga0070684_100170310
251 Ga0070664_100001914
252 Ga0070664_100025130
253 Ga0068857_100075132
254 Ga0068857_100082235
255 Ga0070702_100042145
256 Ga0068852_100037142
257 Ga0068864_100003372
258 Ga0068864_100259459
259 Ga0068863_100057451
260 Ga0068860_100053458
261 Ga0068862_100032176
262 Ga0068862_100048599
263 Ga0081540_1008080
264 Ga0081540_1020671
265 Ga0081539_10000070
266 Ga0081539_10001374
267 Ga0081539_10001984
268 Ga0081539_10005909
269 Ga0075428_100001921
270 Ga0075428_100032804
271 Ga0075430_100001886
272 Ga0075430_100003263
273 Ga0075431_100081804
274 Ga0075431_100146278
275 Ga0075429_100010214
276 Ga0111539_10006312
277 Ga0105245_10096366
278 Ga0105247_10152075
279 Ga0114129_10000905
280 Ga0114129_10005136
281 Ga0114129_10009909
282 Ga0105239_10079476
283 Ga0157369_10003796
284 Ga0163162_10512823
285 Ga0157372_10150606
286 Ga0163163_10024372
287 Ga0163163_10098794
288 Ga0163163_10341298
289 Ga0157377_10006675
290 Ga0157379_10154826
291 Ga0207705_10056261
292 Ga0207707_10033350
293 Ga0207649_10078767
294 Ga0207649_10123812
295 Ga0207681_10252588
296 Ga0207650_10041590
297 Ga0207659_10028917
298 Ga0207690_10178805
299 Ga0207706_10016094
300 Ga0207689_10005638
301 Ga0207689_10098786
302 Ga0207661_10081427
303 Ga0207679_10008501
304 Ga0207679_10100516
305 Ga0207668_10001042
306 Ga0207668_10057571
307 Ga0207677_10082767
308 Ga0207703_10087231
309 Ga0207678_10005740
310 Ga0207708_10021341
311 Ga0207702_10251814
312 Ga0207641_10044419
313 Ga0207674_10005626
314 Ga0207674_10007024
315 Ga0207675_100207841
316 Ga0207683_10348053
317 Ga0207428_10093768
318 Ga0268265_10126773
319 Ga0268264_10346817
320 Ga0307517_10058142
321 Ga0307515_10000454
322 Ga0307515_10004739
323 Ga0307515_10007075
324 Ga0307515_10016184
325 Ga0307512_10002245
326 Ga0307512_10006412
327 Ga0265328_10010204
328 Ga0307513_10002908
329 Ga0307513_10100070
330 Ga0307513_10121321
331 Ga0307513_10123985
332 Ga0307509_10057413
333 Ga0307408_100146867
334 Ga0307408_100272161
335 Ga0307508_10001533
336 Ga0307508_10009322
337 Ga0307508_10016868
338 Ga0307508_10243786
339 Ga0307516_10000528
340 Ga0307516_10030566
341 Ga0307516_10056272
342 Ga0307516_10145622
343 Ga0307405_10185258
344 Ga0307405_10221587
345 Ga0307410_10015806
346 Ga0307410_10084829
347 Ga0326468_10000127
348 Ga0307406_10022870
349 Ga0307406_10059803
350 Ga0307406_10143275
351 Ga0307407_10009492
352 Ga0307407_10091168
353 Ga0307412_10057372
354 Ga0307412_10235649
355 Ga0307409_100000518
356 Ga0307409_100004855
357 Ga0307409_100434892
358 Ga0307416_100004157
359 Ga0307416_100017497
360 Ga0307416_100145180
361 Ga0307416_100183729
362 Ga0307416_100228523
363 Ga0307416_100339148
364 Ga0307415_100000009
365 Ga0307415_100003080
366 Ga0307415_100022362
367 Ga0307415_100081961
368 Ga0307415_100109997
369 Ga0307415_100122161
370 Ga0307415_100153954
371 Ga0316593_10058780
372 Ga0373951_0000134
373 Ga0373943_0123728
374 Ga0373955_0018685
375 Ga0373962_0022206
376 Ga0373935_0077510
377 Ga0373935_0162528
378 Ga0395899_0016164
379 Ga0395899_0194147
380 Ga0395900_0016042
381 Ga0395900_0089244
382 Ga0395898_0019954
383 Ga0395898_0232450
384 Ga0395905_0034236
385 Ga0395901_0005813
386 Ga0395901_0015038
387 Ga0451853_0662098
388 Ga0495638_0072071
389 Ga0495632_0071467
390 Ga0495581_0184692
391 Ga0496104_0022910
392 Ga0496105_0002297
393 Ga0496108_0000247
394 Ga0496108_0056797
395 Ga0496109_0009011
396 Ga0496110_0003471
397 Ga0496112_0013780
398 Ga0496112_0439094
399 Ga0496113_0012880
400 Ga0501047_0003591
401 Ga0501044_0220949
402 nmdc:mga05p37_816467_c1
403 nmdc:mga05p37_9206_c1
404 nmdc:mga09592_254979_c1
405 nmdc:mga09592_27_c1
406 nmdc:mga0qj67_1991_c1
407 nmdc:mga0qj67_24_c1
408 nmdc:mga0qj67_27700_c1
409 nmdc:mga06r32_226_c2
410 nmdc:mga06r32_58753_c1
411 nmdc:mga06r32_76810_c1
412 nmdc:mga08y16_4881_c1
413 nmdc:mga0n895_552477_c1
414 Ga0500651_0010425
415 Ga0500641_0025023
416 Ga0500650_0042915
417 Ga0500652_053490
418 Ga0500579_069041
419 2866067649
420 2501943705
421 2623585711
422 2676482946
423 2753269682
424 2772642884
425 2831938134
426 2832006881
427 2855674161
428 2855679818
429 2855689835
430 2856859602
431 2857290814
432 2858853792
433 2858874342
434 2858885185
435 2858893232
436 2858901916
437 2858904968
438 2867307934
439 2867318674
440 2867324012
441 2867509829
442 2869053264
443 2869064171
444 2869071248
445 2880494527
446 2880497780
447 2902588469
448 2929226354
449 2929233051
450 2996222869
451 649816310
452 8003834345
453 8003858056
454 8003876481
455 8054709635
456 8054729577
457 8054740421
458 8055413260

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22551

TY-Chap1

T3SS (YopN, CesT) and YbjN peptide-binding chaperone 1

253

387

0.98

PF22552

TY-Chap3

T3SS (YopN, CesT) and YbjN peptide-binding chaperone 3

79

203

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
1k3s-assembly1.cif.gz_A type iii secretion chaperone sige 0.8097 233 345
2plg-assembly1.cif.gz_A crystal structure of t110839 protein from synechococcus elongatus 0.8019 244 350
3kxy-assembly1.cif.gz_G crystal structure of the exsc-exse complex 0.7991 224 344
3epu-assembly1.cif.gz_A crystal structure of stm2138, a novel virulence chaperone in salmonella 0.7918 224 349
1xkp-assembly1.cif.gz_C crystal structure of the virulence factor yopn in complex with its heterodimeric chaperone sycn-yscb 0.7754 234 346
ID Description Score Start End Superfamily
af_Q4DD54_496_641_3.30.1460.10 Alpha Beta;2-Layer Sandwich;Yope Regulator; Chain: A,; 0.8004 233 348 3.30.1460.10
3epuA00 Alpha Beta;2-Layer Sandwich;Yope Regulator; Chain: A,; 0.7918 224 349 3.30.1460.10
3kxyA00 Alpha Beta;2-Layer Sandwich;Yope Regulator; Chain: A,; 0.7886 224 345 3.30.1460.10
af_A4IAN3_431_566_3.30.1460.10 Alpha Beta;2-Layer Sandwich;Yope Regulator; Chain: A,; 0.7842 225 348 3.30.1460.10
4g6tA00 Alpha Beta;2-Layer Sandwich;Yope Regulator; Chain: A,; 0.7693 235 344 3.30.1460.10
ID Description Score Start End GO Terms
AF-A0A644ZQS3-F1-model_v4 TY-Chap central domain-containing protein 0.9416 245 357
AF-A0A7C6XQI7-F1-model_v4 TY-Chap central domain-containing protein 0.9292 226 352
AF-A0A359IV55-F1-model_v4 deleted 0.9227 226 358
AF-A0A7M4BQ64-F1-model_v4 TY-Chap central domain-containing protein 0.9086 226 354
AF-A0A7W1GRB9-F1-model_v4 YbjN domain-containing protein 0.8991 250 357

Map