F339811

General Info

Members Datasets Scaffolds Average Seq Length
227 157 454 260

Family's Representative Sequence

Representative Sequence 3300006871|Ga0075434_100003040|Ga0075434_10000304015
Length 295
Sequence MPIGKSQTPNPFTRLVNGWVGIWTLGXXXXDLLMRLKLTIEYAGTRYSGWQIQKNARTVQGEIERAVREASGLREFELYGSGRTDAGVHAIAQVAHLDLETTTAPDALRRRINDALPADINILRAEKVRHKFHARHDAKGRSYIYNVSRRRTAFAKPFVWWVKDDLDVTRMRAAAAHFVGFHDFQSFSDDDPEEKSTQVLVDALDIHEDGDLILIHVEGSHFIWKMVRRLVGVLVEVGRGGLAVAAAAAMLAERSEMPARLTAPASGLFLERVFYEGDRRDAAVLAPIVLPSLLL

Samples

Sample ID Description Type Environment
1 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
2 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
11 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
12 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
13 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
18 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
19 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
20 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
27 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
28 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
31 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
32 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
33 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
34 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
35 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
37 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
38 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
39 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
40 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
41 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
42 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
43 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
45 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
49 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
50 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
51 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
52 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
53 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
54 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
55 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
56 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
57 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
58 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
59 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
81 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
83 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
84 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
85 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
86 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
87 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
88 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
89 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
90 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
91 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
92 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
93 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
94 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
95 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
96 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
97 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
98 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
99 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
100 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
101 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
102 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
103 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
104 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
105 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
106 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
107 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
108 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
109 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
110 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
111 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
112 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
113 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
121 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
122 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
124 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
125 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
126 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
127 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
128 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
129 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
130 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
131 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
132 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
133 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
134 3300049759 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought Metagenome Rhizosphere
135 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
136 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
137 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
138 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
139 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
140 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
141 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
142 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
143 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
144 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
145 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
146 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
147 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
148 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
149 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
150 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
151 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
152 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
153 2643221560 Sphingopyxis sp. Root1497 Isolate Unclassified
154 2643221563 Sphingopyxis sp. Root154 Isolate Unclassified
155 2643221608 Sphingopyxis sp. Root214 Isolate Unclassified
156 2852653556 Sphingopyxis sp. JAI108 Isolate Rhizosphere
157 2852680915 Sphingopyxis sp. JAI128 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.8
Metatranscriptomes 0
Isolates 2.2

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.96
Nodule 0
Rhizoplane 1.76
Rhizosphere 92.95
Stem 0
Stem Tuber 0
Unclassified 4.85

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075434_100003040 3300006871 Bacteria 14917
2 Ga0055536_1025065 3300003781 Bacteria 1710
3 Ga0070690_100010366 3300005330 Bacteria 5423
4 Ga0070670_100262037 3300005331 Bacteria 1507
5 Ga0070675_100012245 3300005354 Bacteria 6722
6 Ga0070675_100013609 3300005354 Bacteria 6398
7 Ga0070671_100053261 3300005355 Bacteria 3364
8 Ga0070674_100333426 3300005356 Bacteria 1220
9 Ga0070673_100001957 3300005364 Bacteria 12423
10 Ga0070667_100344086 3300005367 Bacteria 1349
11 Ga0070705_100006648 3300005440 Bacteria 5683
12 Ga0070700_100135233 3300005441 Bacteria 1668
13 Ga0070694_100136381 3300005444 Unclassified 1778
14 Ga0070707_100031935 3300005468 Bacteria 5016
15 Ga0070698_100090658 3300005471 Bacteria 3040
16 Ga0070698_100124073 3300005471 Bacteria 2540
17 Ga0070698_100648386 3300005471 Bacteria 997
18 Ga0070698_100787351 3300005471 Bacteria 895
19 Ga0070699_100228809 3300005518 Bacteria 1658
20 Ga0070679_100114853 3300005530 Bacteria 2678
21 Ga0070672_100132575 3300005543 Bacteria 2049
22 Ga0070686_100023766 3300005544 Bacteria 3668
23 Ga0070695_100009546 3300005545 Bacteria 5781
24 Ga0070695_100244605 3300005545 Unclassified 1303
25 Ga0070696_100001284 3300005546 Bacteria 16352
26 Ga0070696_100161653 3300005546 Bacteria 1650
27 Ga0070665_100118401 3300005548 Bacteria 2651
28 Ga0070665_100504762 3300005548 Bacteria 1221
29 Ga0070704_100086244 3300005549 Bacteria 2326
30 Ga0070664_100072253 3300005564 Bacteria 2958
31 Ga0070702_100003913 3300005615 Bacteria 6752
32 Ga0068859_100168462 3300005617 Bacteria 2271
33 Ga0068859_100568285 3300005617 Bacteria 1228
34 Ga0068859_100615435 3300005617 Bacteria 1179
35 Ga0068864_100018715 3300005618 Bacteria 5788
36 Ga0068866_10056825 3300005718 Bacteria 2014
37 Ga0068870_10069198 3300005840 Bacteria 1920
38 Ga0068870_10157309 3300005840 Bacteria 1344
39 Ga0068863_100191825 3300005841 Bacteria 1964
40 Ga0068860_100750423 3300005843 Bacteria 987
41 Ga0068862_100095404 3300005844 Bacteria 2595
42 Ga0081539_10004492 3300005985 Bacteria 15352
43 Ga0075368_10050441 3300006042 Bacteria 1653
44 Ga0075366_10195931 3300006195 Bacteria 1228
45 Ga0097621_100054783 3300006237 Bacteria 3254
46 Ga0068871_100123725 3300006358 Bacteria 2187
47 Ga0075428_100003139 3300006844 Bacteria 18043
48 Ga0075428_100012132 3300006844 Bacteria 9587
49 Ga0075430_100001722 3300006846 Bacteria 17845
50 Ga0075430_100185644 3300006846 Bacteria 1729
51 Ga0075430_100416411 3300006846 Bacteria 1109
52 Ga0075431_100040687 3300006847 Bacteria 4790
53 Ga0075431_100109283 3300006847 Bacteria 2854
54 Ga0075433_10002020 3300006852 Bacteria 15298
55 Ga0075434_100014491 3300006871 Bacteria 7536
56 Ga0075434_100151793 3300006871 Bacteria 2337
57 Ga0075429_100003476 3300006880 Bacteria 13440
58 Ga0068865_100375332 3300006881 Unclassified 1158
59 Ga0068865_100515948 3300006881 Bacteria 999
60 Ga0097620_100168460 3300006931 Bacteria 2271
61 Ga0097620_100568318 3300006931 Bacteria 1228
62 Ga0097620_100615405 3300006931 Bacteria 1179
63 Ga0075435_100004555 3300007076 Bacteria 9534
64 Ga0075435_100115248 3300007076 Bacteria 2237
65 Ga0111539_10000407 3300009094 Bacteria 53674
66 Ga0111539_10150105 3300009094 Bacteria 2728
67 Ga0111539_10179534 3300009094 Bacteria 2473
68 Ga0105245_10110832 3300009098 Bacteria 2552
69 Ga0114129_10035164 3300009147 Bacteria 7079
70 Ga0114129_10049128 3300009147 Bacteria 5929
71 Ga0114129_10137957 3300009147 Bacteria 3345
72 Ga0105243_10313572 3300009148 Bacteria 1426
73 Ga0105241_10398287 3300009174 Bacteria 1207
74 Ga0105242_10028412 3300009176 Bacteria 4452
75 Ga0105242_10387803 3300009176 Bacteria 1300
76 Ga0105248_10097176 3300009177 Bacteria 3318
77 Ga0105249_10248113 3300009553 Bacteria 1763
78 Ga0105239_10198893 3300010375 Bacteria 2245
79 Ga0157374_10048253 3300013296 Bacteria 3951
80 Ga0157375_10749779 3300013308 Bacteria 1128
81 Ga0157380_10061719 3300014326 Bacteria 3000
82 Ga0157380_10321202 3300014326 Bacteria 1435
83 Ga0157377_10010402 3300014745 Bacteria 4601
84 Ga0157376_10053993 3300014969 Bacteria 3348
85 Ga0157376_10160297 3300014969 Bacteria 2038
86 Ga0157376_10353352 3300014969 Bacteria 1407
87 Ga0209676_1000084 3300025292 Bacteria 274330
88 Ga0209050_1022655 3300025298 Bacteria 2244
89 Ga0207682_10153194 3300025893 Bacteria 1041
90 Ga0207642_10025343 3300025899 Bacteria 2398
91 Ga0207643_10150665 3300025908 Bacteria 1394
92 Ga0207707_10140030 3300025912 Bacteria 2116
93 Ga0207707_10256492 3300025912 Bacteria 1518
94 Ga0207662_10094211 3300025918 Bacteria 1846
95 Ga0207652_10178883 3300025921 Bacteria 1905
96 Ga0207646_10032320 3300025922 Bacteria 4736
97 Ga0207646_10359035 3300025922 Unclassified 1316
98 Ga0207659_10014057 3300025926 Bacteria 5153
99 Ga0207687_10102648 3300025927 Bacteria 2107
100 Ga0207700_10016065 3300025928 Bacteria 4963
101 Ga0207706_10210475 3300025933 Bacteria 1704
102 Ga0207709_10029288 3300025935 Bacteria 3192
103 Ga0207709_10449010 3300025935 Bacteria 996
104 Ga0207691_10048438 3300025940 Bacteria 3896
105 Ga0207691_10166410 3300025940 Bacteria 1932
106 Ga0207651_10018616 3300025960 Bacteria 4139
107 Ga0207651_10230907 3300025960 Bacteria 1502
108 Ga0207708_10104666 3300026075 Bacteria 2193
109 Ga0207648_10137922 3300026089 Bacteria 2149
110 Ga0207676_10022579 3300026095 Bacteria 4628
111 Ga0207674_10685364 3300026116 Bacteria 989
112 Ga0207698_10235350 3300026142 Bacteria 1665
113 Ga0207428_10044316 3300027907 Bacteria 3589
114 Ga0207428_10185241 3300027907 Bacteria 1571
115 Ga0268265_10243967 3300028380 Bacteria 1587
116 Ga0268265_10251014 3300028380 Bacteria 1567
117 Ga0307408_100173061 3300031548 Bacteria 1725
118 Ga0307405_10004205 3300031731 Bacteria 6776
119 Ga0307413_10041163 3300031824 Bacteria 2703
120 Ga0307410_10066063 3300031852 Bacteria 2490
121 Ga0307410_10197599 3300031852 Bacteria 1533
122 Ga0307410_10457398 3300031852 Bacteria 1042
123 Ga0307406_10447043 3300031901 Bacteria 1036
124 Ga0307412_10072521 3300031911 Bacteria 2353
125 Ga0307409_100074057 3300031995 Bacteria 2719
126 Ga0307409_100216263 3300031995 Bacteria 1726
127 Ga0307416_100033341 3300032002 Bacteria 3903
128 Ga0307414_10004755 3300032004 Bacteria 7412
129 Ga0307411_10004630 3300032005 Bacteria 6624
130 Ga0307411_10022470 3300032005 Bacteria 3714
131 Ga0307415_100028046 3300032126 Bacteria 3576
132 Ga0373937_0224538 3300036401 Unclassified 1768
133 Ga0453684_0000184 3300044712 Bacteria 274619
134 Ga0451576_0006271 3300045051 Bacteria 14633
135 Ga0451576_0041820 3300045051 Bacteria 4842
136 Ga0495603_0184551 3300046455 Unclassified 1207
137 Ga0495608_0217773 3300046511 Bacteria 1199
138 Ga0495630_0247125 3300046517 Bacteria 1363
139 Ga0495630_0528870 3300046517 Unclassified 904
140 Ga0495643_0042717 3300046522 Bacteria 2469
141 Ga0495621_0001798 3300046539 Bacteria 5635
142 Ga0495621_0010401 3300046539 Unclassified 2845
143 Ga0495621_0034516 3300046539 Bacteria 1748
144 Ga0495668_0000228 3300046616 Bacteria 81208
145 Ga0495625_0000169 3300046660 Bacteria 102287
146 Ga0495659_0024462 3300046664 Unclassified 2060
147 Ga0495669_0188009 3300046684 Bacteria 985
148 Ga0495600_0055491 3300046809 Bacteria 2587
149 Ga0495636_0015557 3300047318 Bacteria 3032
150 Ga0495672_0003016 3300047320 Bacteria 14808
151 Ga0495677_0088088 3300047445 Bacteria 1168
152 Ga0495685_013421 3300047447 Unclassified 2781
153 Ga0495615_0091823 3300048090 Bacteria 847
154 Ga0496110_0182534 3300048913 Bacteria 1905
155 Ga0496110_0459525 3300048913 Bacteria 1160
156 Ga0496114_0047508 3300048917 Bacteria 3570
157 Ga0496114_0112895 3300048917 Bacteria 2329
158 Ga0501032_0011763 3300049569 Bacteria 6273
159 Ga0501034_0097444 3300049571 Bacteria 2936
160 Ga0501036_0105400 3300049572 Bacteria 2384
161 Ga0501036_0520071 3300049572 Bacteria 990
162 Ga0501037_0030837 3300049573 Bacteria 3960
163 Ga0501038_0018122 3300049574 Bacteria 6360
164 Ga0501039_0039513 3300049575 Bacteria 3644
165 Ga0501039_0050031 3300049575 Bacteria 3232
166 Ga0501040_0074611 3300049576 Bacteria 2344
167 Ga0501040_0277742 3300049576 Bacteria 1196
168 Ga0501041_0038411 3300049577 Bacteria 2903
169 Ga0501042_0128255 3300049578 Bacteria 1827
170 Ga0501046_0074626 3300049580 Bacteria 2631
171 Ga0501048_0155441 3300049582 Bacteria 1618
172 Ga0501071_0104757 3300049587 Bacteria 2088
173 Ga0501071_0127894 3300049587 Bacteria 1886
174 Ga0501072_0047848 3300049588 Bacteria 3368
175 Ga0501072_0152263 3300049588 Bacteria 1844
176 Ga0501073_0266043 3300049589 Bacteria 1183
177 Ga0501074_0196630 3300049590 Bacteria 1437
178 Ga0501075_0121538 3300049591 Bacteria 1987
179 Ga0501075_0207495 3300049591 Bacteria 1494
180 Ga0501077_0022185 3300049593 Bacteria 4021
181 Ga0501077_0199694 3300049593 Bacteria 1270
182 Ga0501223_002201 3300049663 Bacteria 4370
183 Ga0501079_0157749 3300049741 Bacteria 1769
184 Ga0501080_0022145 3300049742 Bacteria 5887
185 Ga0501080_0426425 3300049742 Bacteria 1191
186 Ga0501080_0430304 3300049742 Bacteria 1185
187 Ga0501081_0025103 3300049743 Bacteria 4007
188 Ga0501081_0042601 3300049743 Bacteria 3111
189 Ga0501262_024321 3300049759 Bacteria 846
190 nmdc:mga05p37_115215_c1 3300050507 Bacteria 3304
191 nmdc:mga05p37_159430_c1 3300050507 Bacteria 2756
192 nmdc:mga05p37_172534_c1 3300050507 Bacteria 2637
193 nmdc:mga05p37_81671_c2 3300050507 Bacteria 3546
194 nmdc:mga09592_122846_c1 3300050508 Bacteria 2231
195 nmdc:mga0qj67_162047_c1 3300050509 Bacteria 1815
196 nmdc:mga0qj67_19393_c1 3300050509 Bacteria 5195
197 nmdc:mga0qj67_271876_c1 3300050509 Bacteria 1374
198 nmdc:mga06r32_3694_c1 3300050510 Bacteria 13674
199 nmdc:mga06r32_391808_c1 3300050510 Bacteria 1371
200 nmdc:mga06r32_62133_c1 3300050510 Bacteria 3598
201 nmdc:mga08y16_232946_c1 3300050511 Bacteria 1905
202 nmdc:mga08y16_32394_c1 3300050511 Bacteria 5496
203 nmdc:mga08y16_651_c1 3300050511 Bacteria 32587
204 nmdc:mga0n895_12577_c1 3300050512 Bacteria 7597
205 nmdc:mga0n895_160694_c1 3300050512 Unclassified 2278
206 nmdc:mga0n895_27204_c1 3300050512 Bacteria 5430
207 nmdc:mga0rr50_7578_c1 3300050513 Bacteria 6707
208 nmdc:mga0rr50_9833_c1 3300050513 Bacteria 6041
209 Ga0495601_0008041 3300053077 Bacteria 6217
210 Ga0500592_022738 3300053116 Bacteria 1010
211 Ga0500658_0067948 3300053134 Bacteria 1497
212 Ga0500568_0001414 3300053139 Bacteria 15558
213 Ga0500627_0000012 3300053158 Bacteria 140613
214 Ga0501084_0116778 3300054114 Bacteria 2243
215 Ga0590071_000061 3300059421 Bacteria 29023
216 Ga0590074_000200 3300059423 Bacteria 7669
217 Ga0590074_001568 3300059423 Bacteria 3715
218 Ga0590075_000074 3300059424 Bacteria 25445
219 Ga0590075_007163 3300059424 Bacteria 2647
220 Ga0590077_002613 3300059426 Bacteria 3815
221 Ga0530510_0011216 3300061734 Bacteria 6288
222 Ga0530510_0091136 3300061734 Bacteria 2224
223 2643822176 2643221560 Bacteria 4801179
224 2643833364 2643221563 Bacteria 4726935
225 2644054291 2643221608 Bacteria 4724829
226 2852654693 2852653556 Bacteria 4050083
227 2852684123 2852680915 Bacteria 4100189
228 Ga0075434_100003040
229 Ga0055536_1025065
230 Ga0070690_100010366
231 Ga0070670_100262037
232 Ga0070675_100012245
233 Ga0070675_100013609
234 Ga0070671_100053261
235 Ga0070674_100333426
236 Ga0070673_100001957
237 Ga0070667_100344086
238 Ga0070705_100006648
239 Ga0070700_100135233
240 Ga0070694_100136381
241 Ga0070707_100031935
242 Ga0070698_100090658
243 Ga0070698_100124073
244 Ga0070698_100648386
245 Ga0070698_100787351
246 Ga0070699_100228809
247 Ga0070679_100114853
248 Ga0070672_100132575
249 Ga0070686_100023766
250 Ga0070695_100009546
251 Ga0070695_100244605
252 Ga0070696_100001284
253 Ga0070696_100161653
254 Ga0070665_100118401
255 Ga0070665_100504762
256 Ga0070704_100086244
257 Ga0070664_100072253
258 Ga0070702_100003913
259 Ga0068859_100168462
260 Ga0068859_100568285
261 Ga0068859_100615435
262 Ga0068864_100018715
263 Ga0068866_10056825
264 Ga0068870_10069198
265 Ga0068870_10157309
266 Ga0068863_100191825
267 Ga0068860_100750423
268 Ga0068862_100095404
269 Ga0081539_10004492
270 Ga0075368_10050441
271 Ga0075366_10195931
272 Ga0097621_100054783
273 Ga0068871_100123725
274 Ga0075428_100003139
275 Ga0075428_100012132
276 Ga0075430_100001722
277 Ga0075430_100185644
278 Ga0075430_100416411
279 Ga0075431_100040687
280 Ga0075431_100109283
281 Ga0075433_10002020
282 Ga0075434_100014491
283 Ga0075434_100151793
284 Ga0075429_100003476
285 Ga0068865_100375332
286 Ga0068865_100515948
287 Ga0097620_100168460
288 Ga0097620_100568318
289 Ga0097620_100615405
290 Ga0075435_100004555
291 Ga0075435_100115248
292 Ga0111539_10000407
293 Ga0111539_10150105
294 Ga0111539_10179534
295 Ga0105245_10110832
296 Ga0114129_10035164
297 Ga0114129_10049128
298 Ga0114129_10137957
299 Ga0105243_10313572
300 Ga0105241_10398287
301 Ga0105242_10028412
302 Ga0105242_10387803
303 Ga0105248_10097176
304 Ga0105249_10248113
305 Ga0105239_10198893
306 Ga0157374_10048253
307 Ga0157375_10749779
308 Ga0157380_10061719
309 Ga0157380_10321202
310 Ga0157377_10010402
311 Ga0157376_10053993
312 Ga0157376_10160297
313 Ga0157376_10353352
314 Ga0209676_1000084
315 Ga0209050_1022655
316 Ga0207682_10153194
317 Ga0207642_10025343
318 Ga0207643_10150665
319 Ga0207707_10140030
320 Ga0207707_10256492
321 Ga0207662_10094211
322 Ga0207652_10178883
323 Ga0207646_10032320
324 Ga0207646_10359035
325 Ga0207659_10014057
326 Ga0207687_10102648
327 Ga0207700_10016065
328 Ga0207706_10210475
329 Ga0207709_10029288
330 Ga0207709_10449010
331 Ga0207691_10048438
332 Ga0207691_10166410
333 Ga0207651_10018616
334 Ga0207651_10230907
335 Ga0207708_10104666
336 Ga0207648_10137922
337 Ga0207676_10022579
338 Ga0207674_10685364
339 Ga0207698_10235350
340 Ga0207428_10044316
341 Ga0207428_10185241
342 Ga0268265_10243967
343 Ga0268265_10251014
344 Ga0307408_100173061
345 Ga0307405_10004205
346 Ga0307413_10041163
347 Ga0307410_10066063
348 Ga0307410_10197599
349 Ga0307410_10457398
350 Ga0307406_10447043
351 Ga0307412_10072521
352 Ga0307409_100074057
353 Ga0307409_100216263
354 Ga0307416_100033341
355 Ga0307414_10004755
356 Ga0307411_10004630
357 Ga0307411_10022470
358 Ga0307415_100028046
359 Ga0373937_0224538
360 Ga0453684_0000184
361 Ga0451576_0006271
362 Ga0451576_0041820
363 Ga0495603_0184551
364 Ga0495608_0217773
365 Ga0495630_0247125
366 Ga0495630_0528870
367 Ga0495643_0042717
368 Ga0495621_0001798
369 Ga0495621_0010401
370 Ga0495621_0034516
371 Ga0495668_0000228
372 Ga0495625_0000169
373 Ga0495659_0024462
374 Ga0495669_0188009
375 Ga0495600_0055491
376 Ga0495636_0015557
377 Ga0495672_0003016
378 Ga0495677_0088088
379 Ga0495685_013421
380 Ga0495615_0091823
381 Ga0496110_0182534
382 Ga0496110_0459525
383 Ga0496114_0047508
384 Ga0496114_0112895
385 Ga0501032_0011763
386 Ga0501034_0097444
387 Ga0501036_0105400
388 Ga0501036_0520071
389 Ga0501037_0030837
390 Ga0501038_0018122
391 Ga0501039_0039513
392 Ga0501039_0050031
393 Ga0501040_0074611
394 Ga0501040_0277742
395 Ga0501041_0038411
396 Ga0501042_0128255
397 Ga0501046_0074626
398 Ga0501048_0155441
399 Ga0501071_0104757
400 Ga0501071_0127894
401 Ga0501072_0047848
402 Ga0501072_0152263
403 Ga0501073_0266043
404 Ga0501074_0196630
405 Ga0501075_0121538
406 Ga0501075_0207495
407 Ga0501077_0022185
408 Ga0501077_0199694
409 Ga0501223_002201
410 Ga0501079_0157749
411 Ga0501080_0022145
412 Ga0501080_0426425
413 Ga0501080_0430304
414 Ga0501081_0025103
415 Ga0501081_0042601
416 Ga0501262_024321
417 nmdc:mga05p37_115215_c1
418 nmdc:mga05p37_159430_c1
419 nmdc:mga05p37_172534_c1
420 nmdc:mga05p37_81671_c2
421 nmdc:mga09592_122846_c1
422 nmdc:mga0qj67_162047_c1
423 nmdc:mga0qj67_19393_c1
424 nmdc:mga0qj67_271876_c1
425 nmdc:mga06r32_3694_c1
426 nmdc:mga06r32_391808_c1
427 nmdc:mga06r32_62133_c1
428 nmdc:mga08y16_232946_c1
429 nmdc:mga08y16_32394_c1
430 nmdc:mga08y16_651_c1
431 nmdc:mga0n895_12577_c1
432 nmdc:mga0n895_160694_c1
433 nmdc:mga0n895_27204_c1
434 nmdc:mga0rr50_7578_c1
435 nmdc:mga0rr50_9833_c1
436 Ga0495601_0008041
437 Ga0500592_022738
438 Ga0500658_0067948
439 Ga0500568_0001414
440 Ga0500627_0000012
441 Ga0501084_0116778
442 Ga0590071_000061
443 Ga0590074_000200
444 Ga0590074_001568
445 Ga0590075_000074
446 Ga0590075_007163
447 Ga0590077_002613
448 Ga0530510_0011216
449 Ga0530510_0091136
450 2643822176
451 2643833364
452 2644054291
453 2852654693
454 2852684123

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01416

PseudoU_synth_1

tRNA pseudouridine synthase

174

276

0.96

PF01416

PseudoU_synth_1

tRNA pseudouridine synthase

38

137

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2nr0-assembly1.cif.gz_B crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.9626 2 246
2nre-assembly1.cif.gz_A-2 crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.9567 2 246
2nr0-assembly1.cif.gz_B crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.9512 2 246
2nre-assembly1.cif.gz_A-2 crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.9266 2 246
1vs3-assembly1.cif.gz_B crystal structure of the trna pseudouridine synthase trua from thermus thermophilus hb8 0.9242 1 246
ID Description Score Start End Superfamily
af_C7J2E5_59_129_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9583 3 65 3.30.70.580
af_Q2FW37_106_241_3.30.70.660 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.9581 109 239 3.30.70.660
af_Q2FW37_1_104_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9566 3 106 3.30.70.580
af_A0A1D6HBJ9_162_299_3.30.70.660 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.9521 108 238 3.30.70.660
af_Q54RR6_2_123_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.951 1 104 3.30.70.580
ID Description Score Start End GO Terms
AF-A0A258RT43-F1-model_v4 tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I) 0.9916 1 246 GO:0003723
GO:0031119
GO:0160147
AF-A0A6I4LWX2-F1-model_v4 tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I) 0.9908 1 246 GO:0003723
GO:0031119
GO:0160147
AF-A0A6A5KZC7-F1-model_v4 deleted 0.9896 2 245
AF-A0A154NAY1-F1-model_v4 tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I) 0.9887 1 245 GO:0003723
GO:0031119
GO:0160147
AF-A0A523FAM1-F1-model_v4 tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I) 0.9887 1 245 GO:0003723
GO:0031119
GO:0160147

Map