F338803

General Info

Members Datasets Scaffolds Average Seq Length
226 152 452 510

Family's Representative Sequence

Representative Sequence 3300009147|Ga0114129_10001734|Ga0114129_1000173417
Length 569
Sequence VAEHPVERLARPRDDRVEIDPARFDRSVDQRTHPVVVPERYRQADIGHGAEYYASVLLRELVMTSTAVAQASSRLTKIGQLATLLRALAPGEIEIAISFLSGELRQGRIGIGGSAIRDAKPLTSAASPTLELIEVDEVFERIAGIAGRGSPAERVRMLRELLARAADDEQDFLIRLLFGELRQGALEGVLVEAVARAADLSPGAVRRAVMMAGELASVARAVLVEGGSGLARFAVQIFRPVQPMLAQTASNIDEALADLEEDVALEWKLDGARIQVHKGGDDIKVFTRNLREVTAAVPEVVEAARTLPVNEVIFDGEVIALRPDGTPETFQRTMQRFGRKLDIDRLRTELPLTPFFFDCLYVDGASLIDQPQAERFATLIALARPAIVPSLVRPTREGAARFVEETLQRGHEGVMVKARASGYAAGRRGQHWLKVKLARTLDLVVLAAEWGHGRRKGWLSNLHLGARDPVSGGFVMLGKTFKGMTDQMLAWQTEKLLQLEIARDDYTVFVRPELVVEIAFNDVQGSPHYPGGLALRFARVKSYRADKTAADADTIETVRDIYGRTSGGA

Samples

Sample ID Description Type Environment
1 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
2 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
12 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
13 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
14 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
15 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
16 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
17 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
18 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
19 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
22 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
23 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
24 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
25 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
26 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
27 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
28 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
29 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
30 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
31 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
32 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
33 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
34 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
35 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
36 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
37 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
38 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
39 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
40 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
41 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
42 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
43 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
45 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
46 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
47 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
48 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
49 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
50 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
51 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
52 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
53 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
54 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
55 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
56 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
57 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
58 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
59 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
60 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
61 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
62 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
63 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
64 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
65 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
66 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
67 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
68 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
69 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
70 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
71 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
72 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
73 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
74 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
109 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
110 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
114 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
115 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
116 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
117 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
118 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
119 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
120 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
121 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
122 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
123 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
124 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
125 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
126 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
127 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
128 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
129 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
130 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
133 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
134 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
135 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
136 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
137 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
138 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
139 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
140 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
141 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
142 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
143 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
144 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
145 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
146 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
147 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
148 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
149 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
150 2873314349 Sphaerisporangium siamense DSM 45784 Isolate Rhizosphere
151 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
152 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.23
Metatranscriptomes 0
Isolates 1.77

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.33
Rhizosphere 96.9
Stem 0
Stem Tuber 0
Unclassified 0.44

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0114129_10001734 3300009147 Bacteria 29705
2 Ga0065707_10000619 3300005295 Bacteria 16503
3 Ga0070683_100006363 3300005329 Bacteria 9903
4 Ga0070670_100006876 3300005331 Bacteria 9637
5 Ga0070670_100154356 3300005331 Bacteria 1988
6 Ga0070689_100020964 3300005340 Bacteria 4859
7 Ga0070692_10031622 3300005345 Bacteria 2654
8 Ga0070668_100023588 3300005347 Bacteria 4655
9 Ga0070668_100024976 3300005347 Bacteria 4529
10 Ga0070669_100072691 3300005353 Bacteria 2546
11 Ga0070675_100019147 3300005354 Bacteria 5453
12 Ga0070675_100059237 3300005354 Bacteria 3159
13 Ga0070675_100065624 3300005354 Bacteria 3001
14 Ga0070671_100006779 3300005355 Bacteria 9164
15 Ga0070673_100025066 3300005364 Bacteria 4383
16 Ga0070673_100062932 3300005364 Bacteria 2950
17 Ga0070659_100005417 3300005366 Bacteria 9164
18 Ga0070667_100047835 3300005367 Bacteria 3599
19 Ga0070667_100093195 3300005367 Bacteria 2594
20 Ga0070709_10000014 3300005434 Bacteria 158503
21 Ga0070701_10034295 3300005438 Bacteria 2541
22 Ga0070705_100000457 3300005440 Bacteria 23498
23 Ga0070700_100019658 3300005441 Bacteria 3902
24 Ga0070694_100016334 3300005444 Bacteria 4672
25 Ga0070694_100064228 3300005444 Bacteria 2512
26 Ga0070663_100041579 3300005455 Bacteria 3225
27 Ga0070678_100096818 3300005456 Bacteria 2277
28 Ga0070681_10197763 3300005458 Bacteria 1929
29 Ga0068867_100009776 3300005459 Bacteria 6759
30 Ga0070707_100060135 3300005468 Bacteria 3644
31 Ga0070698_100014302 3300005471 Bacteria 8389
32 Ga0070699_100019738 3300005518 Bacteria 5809
33 Ga0070679_100011068 3300005530 Bacteria 8583
34 Ga0070684_100059037 3300005535 Bacteria 3353
35 Ga0068853_100103957 3300005539 Bacteria 2514
36 Ga0070672_100005536 3300005543 Bacteria 8386
37 Ga0070695_100000032 3300005545 Bacteria 53084
38 Ga0070695_100003220 3300005545 Bacteria 9528
39 Ga0070696_100006312 3300005546 Bacteria 7938
40 Ga0070696_100021543 3300005546 Bacteria 4370
41 Ga0070696_100077050 3300005546 Bacteria 2355
42 Ga0070665_100240705 3300005548 Bacteria 1810
43 Ga0070704_100025375 3300005549 Bacteria 3902
44 Ga0070704_100031705 3300005549 Bacteria 3558
45 Ga0068857_100074600 3300005577 Bacteria 3023
46 Ga0068856_100000880 3300005614 Bacteria 32137
47 Ga0068856_100061685 3300005614 Bacteria 3704
48 Ga0068851_10005209 3300005834 Bacteria 5900
49 Ga0068863_100077544 3300005841 Unclassified 3145
50 Ga0068863_100098388 3300005841 Bacteria 2778
51 Ga0068863_100101673 3300005841 Bacteria 2732
52 Ga0068858_100004539 3300005842 Bacteria 13603
53 Ga0068860_100040100 3300005843 Bacteria 4478
54 Ga0068862_100017543 3300005844 Bacteria 5961
55 Ga0081455_10034882 3300005937 Bacteria 4503
56 Ga0070716_100018817 3300006173 Bacteria 3602
57 Ga0097621_100117425 3300006237 Bacteria 2254
58 Ga0075428_100010881 3300006844 Bacteria 10116
59 Ga0075428_100051122 3300006844 Bacteria 4532
60 Ga0075428_100058619 3300006844 Bacteria 4215
61 Ga0075430_100130049 3300006846 Bacteria 2099
62 Ga0075431_100015301 3300006847 Bacteria 7773
63 Ga0075433_10028489 3300006852 Bacteria 4748
64 Ga0075433_10155432 3300006852 Bacteria 2035
65 Ga0075434_100000060 3300006871 Bacteria 55280
66 Ga0075434_100004341 3300006871 Bacteria 12754
67 Ga0075434_100084569 3300006871 Bacteria 3171
68 Ga0075429_100108259 3300006880 Bacteria 2429
69 Ga0075436_100001937 3300006914 Bacteria 14237
70 Ga0075436_100018989 3300006914 Bacteria 4708
71 Ga0075435_100000048 3300007076 Bacteria 60778
72 Ga0075435_100076175 3300007076 Bacteria 2748
73 Ga0105250_10000014 3300009092 Bacteria 268458
74 Ga0105240_10020233 3300009093 Bacteria 8883
75 Ga0105240_10163966 3300009093 Bacteria 2637
76 Ga0111539_10000713 3300009094 Bacteria 43163
77 Ga0111539_10002101 3300009094 Bacteria 26616
78 Ga0111539_10004197 3300009094 Bacteria 18905
79 Ga0111539_10007419 3300009094 Bacteria 14055
80 Ga0111539_10028096 3300009094 Bacteria 6868
81 Ga0111539_10069001 3300009094 Bacteria 4174
82 Ga0105245_10117086 3300009098 Bacteria 2485
83 Ga0114129_10004183 3300009147 Bacteria 20387
84 Ga0114129_10005094 3300009147 Bacteria 18505
85 Ga0114129_10025741 3300009147 Bacteria 8334
86 Ga0114129_10087554 3300009147 Bacteria 4319
87 Ga0105243_10014927 3300009148 Bacteria 5879
88 Ga0105241_10008703 3300009174 Bacteria 7456
89 Ga0105241_10181638 3300009174 Bacteria 1746
90 Ga0105248_10135475 3300009177 Bacteria 2778
91 Ga0105237_10084842 3300009545 Bacteria 3157
92 Ga0105237_10192602 3300009545 Bacteria 2038
93 Ga0105238_10052236 3300009551 Bacteria 4109
94 Ga0105249_10148289 3300009553 Bacteria 2256
95 Ga0105239_10044885 3300010375 Bacteria 4845
96 Ga0157373_10030776 3300013100 Bacteria 3861
97 Ga0157370_10147464 3300013104 Bacteria 2190
98 Ga0157369_10025952 3300013105 Bacteria 6501
99 Ga0157378_10029331 3300013297 Bacteria 4856
100 Ga0163162_10049910 3300013306 Bacteria 4195
101 Ga0163162_10118707 3300013306 Bacteria 2747
102 Ga0157372_10001680 3300013307 Bacteria 23934
103 Ga0157375_10007735 3300013308 Bacteria 9408
104 Ga0157375_10179657 3300013308 Bacteria 2267
105 Ga0157380_10072125 3300014326 Bacteria 2796
106 Ga0157380_10100765 3300014326 Bacteria 2405
107 Ga0157379_10000268 3300014968 Bacteria 41057
108 Ga0157379_10012328 3300014968 Bacteria 7468
109 Ga0157376_10161372 3300014969 Bacteria 2032
110 Ga0157376_10218152 3300014969 Bacteria 1765
111 Ga0213876_10039185 3300021384 Bacteria 2503
112 Ga0207697_10018872 3300025315 Bacteria 2826
113 Ga0207656_10007798 3300025321 Bacteria 3918
114 Ga0207696_1000326 3300025711 Bacteria 50490
115 Ga0207699_10000037 3300025906 Bacteria 126665
116 Ga0207645_10117010 3300025907 Bacteria 1728
117 Ga0207643_10047554 3300025908 Bacteria 2428
118 Ga0207705_10023227 3300025909 Bacteria 4424
119 Ga0207707_10004270 3300025912 Bacteria 12654
120 Ga0207707_10005604 3300025912 Bacteria 10986
121 Ga0207707_10029541 3300025912 Bacteria 4794
122 Ga0207671_10086665 3300025914 Bacteria 2354
123 Ga0207660_10006032 3300025917 Bacteria 7867
124 Ga0207657_10000302 3300025919 Bacteria 52284
125 Ga0207652_10006980 3300025921 Bacteria 9099
126 Ga0207646_10039969 3300025922 Bacteria 4221
127 Ga0207659_10033909 3300025926 Bacteria 3517
128 Ga0207664_10016375 3300025929 Bacteria 5408
129 Ga0207664_10026594 3300025929 Bacteria 4376
130 Ga0207644_10001547 3300025931 Bacteria 14835
131 Ga0207644_10040329 3300025931 Bacteria 3300
132 Ga0207706_10018811 3300025933 Bacteria 6212
133 Ga0207706_10040711 3300025933 Bacteria 4119
134 Ga0207669_10074961 3300025937 Bacteria 2142
135 Ga0207665_10010936 3300025939 Bacteria 5957
136 Ga0207691_10001412 3300025940 Bacteria 23995
137 Ga0207691_10010015 3300025940 Bacteria 9098
138 Ga0207711_10197167 3300025941 Bacteria 1837
139 Ga0207689_10011426 3300025942 Bacteria 7610
140 Ga0207661_10020292 3300025944 Bacteria 4964
141 Ga0207667_10001020 3300025949 Bacteria 35702
142 Ga0207651_10078927 3300025960 Bacteria 2363
143 Ga0207651_10159978 3300025960 Bacteria 1764
144 Ga0207712_10119125 3300025961 Bacteria 1994
145 Ga0207668_10035614 3300025972 Bacteria 3316
146 Ga0207678_10009245 3300026067 Bacteria 8673
147 Ga0207708_10028082 3300026075 Bacteria 4261
148 Ga0207708_10138511 3300026075 Bacteria 1907
149 Ga0207702_10008966 3300026078 Bacteria 8427
150 Ga0207648_10016967 3300026089 Bacteria 6635
151 Ga0207674_10000251 3300026116 Bacteria 66996
152 Ga0207675_100228285 3300026118 Bacteria 1795
153 Ga0207683_10074836 3300026121 Bacteria 2997
154 Ga0209974_10003386 3300027876 Bacteria 5762
155 Ga0207428_10000716 3300027907 Bacteria 38250
156 Ga0207428_10014119 3300027907 Bacteria 6954
157 Ga0207428_10045854 3300027907 Bacteria 3517
158 Ga0268266_10218563 3300028379 Bacteria 1750
159 Ga0268265_10018184 3300028380 Bacteria 4868
160 Ga0268264_10150297 3300028381 Bacteria 2087
161 Ga0307407_10012866 3300031903 Bacteria 4041
162 Ga0307412_10080918 3300031911 Bacteria 2245
163 Ga0307416_100002508 3300032002 Bacteria 10556
164 Ga0307416_100002577 3300032002 Bacteria 10468
165 Ga0307416_100052355 3300032002 Bacteria 3268
166 Ga0307416_100230468 3300032002 Bacteria 1785
167 Ga0307414_10106711 3300032004 Bacteria 2121
168 Ga0307411_10004477 3300032005 Bacteria 6702
169 Ga0307411_10004948 3300032005 Bacteria 6479
170 Ga0307415_100124817 3300032126 Bacteria 1938
171 Ga0395898_0016344 3300037466 Bacteria 7595
172 Ga0395901_0226205 3300038443 Bacteria 1954
173 Ga0436365_1932428 3300039437 Bacteria 7177
174 Ga0439457_006938 3300042014 Bacteria 2740
175 Ga0451576_0004638 3300045051 Bacteria 17736
176 Ga0451576_0055485 3300045051 Bacteria 4145
177 Ga0495628_0039062 3300046516 Bacteria 3797
178 Ga0495621_0003244 3300046539 Bacteria 4469
179 Ga0495645_0013682 3300046543 Bacteria 5748
180 Ga0495659_0003279 3300046664 Bacteria 5191
181 Ga0496114_0043646 3300048917 Bacteria 3718
182 Ga0496114_0135537 3300048917 Bacteria 2129
183 Ga0496115_0134901 3300048918 Bacteria 2035
184 Ga0501031_0020738 3300049568 Bacteria 4284
185 Ga0501040_0018550 3300049576 Bacteria 4620
186 Ga0501040_0026310 3300049576 Bacteria 3913
187 Ga0501042_0049100 3300049578 Bacteria 3010
188 Ga0501071_0083521 3300049587 Bacteria 2340
189 Ga0501076_0012909 3300049592 Bacteria 6253
190 Ga0501081_0059037 3300049743 Bacteria 2655
191 Ga0501045_0013732 3300049824 Bacteria 5726
192 nmdc:mga05p37_12415_c1 3300050507 Bacteria 10173
193 nmdc:mga05p37_221546_c2 3300050507 Bacteria 1812
194 nmdc:mga05p37_2536_c1 3300050507 Bacteria 21219
195 nmdc:mga05p37_4_c1 3300050507 Bacteria 162001
196 nmdc:mga05p37_72702_c1 3300050507 Bacteria 4232
197 nmdc:mga09592_39272_c1 3300050508 Bacteria 3975
198 nmdc:mga09592_88856_c1 3300050508 Bacteria 2639
199 nmdc:mga0qj67_10059_c1 3300050509 Bacteria 7058
200 nmdc:mga0qj67_119123_c1 3300050509 Bacteria 2135
201 nmdc:mga0qj67_51555_c1 3300050509 Bacteria 3255
202 nmdc:mga0qj67_58379_c1 3300050509 Bacteria 3059
203 nmdc:mga06r32_117678_c1 3300050510 Bacteria 2619
204 nmdc:mga06r32_30510_c1 3300050510 Bacteria 5059
205 nmdc:mga08y16_102024_c1 3300050511 Bacteria 2987
206 nmdc:mga08y16_1756_c1 3300050511 Bacteria 21965
207 nmdc:mga08y16_281_c1 3300050511 Bacteria 46381
208 nmdc:mga08y16_35130_c1 3300050511 Bacteria 5265
209 nmdc:mga0n895_121942_c1 3300050512 Bacteria 2628
210 nmdc:mga0n895_14_c1 3300050512 Bacteria 102430
211 nmdc:mga0n895_41394_c1 3300050512 Bacteria 4479
212 nmdc:mga0rr50_131455_c1 3300050513 Bacteria 2005
213 nmdc:mga0rr50_46585_c1 3300050513 Bacteria 3193
214 nmdc:mga0rr50_68_c1 3300050513 Bacteria 61320
215 nmdc:mga08x19_80032_c1 3300050514 Bacteria 2144
216 nmdc:mga08x19_862_c1 3300050514 Bacteria 19241
217 nmdc:mga0a205_46056_c1 3300050515 Bacteria 4206
218 nmdc:mga0a205_82288_c1 3300050515 Bacteria 3109
219 Ga0495601_0017247 3300053077 Bacteria 4383
220 Ga0495619_0050479 3300053085 Bacteria 2746
221 Ga0495619_0073879 3300053085 Bacteria 2285
222 Ga0530510_0003490 3300061734 Bacteria 10808
223 2676496428 2675903060 Bacteria 10051191
224 2873318064 2873314349 Bacteria 8512634
225 2895435353 2895427314 Bacteria 13147766
226 2895446594 2895442618 Bacteria 11027144
227 Ga0114129_10001734
228 Ga0065707_10000619
229 Ga0070683_100006363
230 Ga0070670_100006876
231 Ga0070670_100154356
232 Ga0070689_100020964
233 Ga0070692_10031622
234 Ga0070668_100023588
235 Ga0070668_100024976
236 Ga0070669_100072691
237 Ga0070675_100019147
238 Ga0070675_100059237
239 Ga0070675_100065624
240 Ga0070671_100006779
241 Ga0070673_100025066
242 Ga0070673_100062932
243 Ga0070659_100005417
244 Ga0070667_100047835
245 Ga0070667_100093195
246 Ga0070709_10000014
247 Ga0070701_10034295
248 Ga0070705_100000457
249 Ga0070700_100019658
250 Ga0070694_100016334
251 Ga0070694_100064228
252 Ga0070663_100041579
253 Ga0070678_100096818
254 Ga0070681_10197763
255 Ga0068867_100009776
256 Ga0070707_100060135
257 Ga0070698_100014302
258 Ga0070699_100019738
259 Ga0070679_100011068
260 Ga0070684_100059037
261 Ga0068853_100103957
262 Ga0070672_100005536
263 Ga0070695_100000032
264 Ga0070695_100003220
265 Ga0070696_100006312
266 Ga0070696_100021543
267 Ga0070696_100077050
268 Ga0070665_100240705
269 Ga0070704_100025375
270 Ga0070704_100031705
271 Ga0068857_100074600
272 Ga0068856_100000880
273 Ga0068856_100061685
274 Ga0068851_10005209
275 Ga0068863_100077544
276 Ga0068863_100098388
277 Ga0068863_100101673
278 Ga0068858_100004539
279 Ga0068860_100040100
280 Ga0068862_100017543
281 Ga0081455_10034882
282 Ga0070716_100018817
283 Ga0097621_100117425
284 Ga0075428_100010881
285 Ga0075428_100051122
286 Ga0075428_100058619
287 Ga0075430_100130049
288 Ga0075431_100015301
289 Ga0075433_10028489
290 Ga0075433_10155432
291 Ga0075434_100000060
292 Ga0075434_100004341
293 Ga0075434_100084569
294 Ga0075429_100108259
295 Ga0075436_100001937
296 Ga0075436_100018989
297 Ga0075435_100000048
298 Ga0075435_100076175
299 Ga0105250_10000014
300 Ga0105240_10020233
301 Ga0105240_10163966
302 Ga0111539_10000713
303 Ga0111539_10002101
304 Ga0111539_10004197
305 Ga0111539_10007419
306 Ga0111539_10028096
307 Ga0111539_10069001
308 Ga0105245_10117086
309 Ga0114129_10004183
310 Ga0114129_10005094
311 Ga0114129_10025741
312 Ga0114129_10087554
313 Ga0105243_10014927
314 Ga0105241_10008703
315 Ga0105241_10181638
316 Ga0105248_10135475
317 Ga0105237_10084842
318 Ga0105237_10192602
319 Ga0105238_10052236
320 Ga0105249_10148289
321 Ga0105239_10044885
322 Ga0157373_10030776
323 Ga0157370_10147464
324 Ga0157369_10025952
325 Ga0157378_10029331
326 Ga0163162_10049910
327 Ga0163162_10118707
328 Ga0157372_10001680
329 Ga0157375_10007735
330 Ga0157375_10179657
331 Ga0157380_10072125
332 Ga0157380_10100765
333 Ga0157379_10000268
334 Ga0157379_10012328
335 Ga0157376_10161372
336 Ga0157376_10218152
337 Ga0213876_10039185
338 Ga0207697_10018872
339 Ga0207656_10007798
340 Ga0207696_1000326
341 Ga0207699_10000037
342 Ga0207645_10117010
343 Ga0207643_10047554
344 Ga0207705_10023227
345 Ga0207707_10004270
346 Ga0207707_10005604
347 Ga0207707_10029541
348 Ga0207671_10086665
349 Ga0207660_10006032
350 Ga0207657_10000302
351 Ga0207652_10006980
352 Ga0207646_10039969
353 Ga0207659_10033909
354 Ga0207664_10016375
355 Ga0207664_10026594
356 Ga0207644_10001547
357 Ga0207644_10040329
358 Ga0207706_10018811
359 Ga0207706_10040711
360 Ga0207669_10074961
361 Ga0207665_10010936
362 Ga0207691_10001412
363 Ga0207691_10010015
364 Ga0207711_10197167
365 Ga0207689_10011426
366 Ga0207661_10020292
367 Ga0207667_10001020
368 Ga0207651_10078927
369 Ga0207651_10159978
370 Ga0207712_10119125
371 Ga0207668_10035614
372 Ga0207678_10009245
373 Ga0207708_10028082
374 Ga0207708_10138511
375 Ga0207702_10008966
376 Ga0207648_10016967
377 Ga0207674_10000251
378 Ga0207675_100228285
379 Ga0207683_10074836
380 Ga0209974_10003386
381 Ga0207428_10000716
382 Ga0207428_10014119
383 Ga0207428_10045854
384 Ga0268266_10218563
385 Ga0268265_10018184
386 Ga0268264_10150297
387 Ga0307407_10012866
388 Ga0307412_10080918
389 Ga0307416_100002508
390 Ga0307416_100002577
391 Ga0307416_100052355
392 Ga0307416_100230468
393 Ga0307414_10106711
394 Ga0307411_10004477
395 Ga0307411_10004948
396 Ga0307415_100124817
397 Ga0395898_0016344
398 Ga0395901_0226205
399 Ga0436365_1932428
400 Ga0439457_006938
401 Ga0451576_0004638
402 Ga0451576_0055485
403 Ga0495628_0039062
404 Ga0495621_0003244
405 Ga0495645_0013682
406 Ga0495659_0003279
407 Ga0496114_0043646
408 Ga0496114_0135537
409 Ga0496115_0134901
410 Ga0501031_0020738
411 Ga0501040_0018550
412 Ga0501040_0026310
413 Ga0501042_0049100
414 Ga0501071_0083521
415 Ga0501076_0012909
416 Ga0501081_0059037
417 Ga0501045_0013732
418 nmdc:mga05p37_12415_c1
419 nmdc:mga05p37_221546_c2
420 nmdc:mga05p37_2536_c1
421 nmdc:mga05p37_4_c1
422 nmdc:mga05p37_72702_c1
423 nmdc:mga09592_39272_c1
424 nmdc:mga09592_88856_c1
425 nmdc:mga0qj67_10059_c1
426 nmdc:mga0qj67_119123_c1
427 nmdc:mga0qj67_51555_c1
428 nmdc:mga0qj67_58379_c1
429 nmdc:mga06r32_117678_c1
430 nmdc:mga06r32_30510_c1
431 nmdc:mga08y16_102024_c1
432 nmdc:mga08y16_1756_c1
433 nmdc:mga08y16_281_c1
434 nmdc:mga08y16_35130_c1
435 nmdc:mga0n895_121942_c1
436 nmdc:mga0n895_14_c1
437 nmdc:mga0n895_41394_c1
438 nmdc:mga0rr50_131455_c1
439 nmdc:mga0rr50_46585_c1
440 nmdc:mga0rr50_68_c1
441 nmdc:mga08x19_80032_c1
442 nmdc:mga08x19_862_c1
443 nmdc:mga0a205_46056_c1
444 nmdc:mga0a205_82288_c1
445 Ga0495601_0017247
446 Ga0495619_0050479
447 Ga0495619_0073879
448 Ga0530510_0003490
449 2676496428
450 2873318064
451 2895435353
452 2895446594

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01068

DNA_ligase_A_M

ATP dependent DNA ligase domain

243

436

0.96

PF04679

DNA_ligase_A_C

ATP dependent DNA ligase C terminal region

455

547

0.96

PF04675

DNA_ligase_A_N

DNA ligase N terminus

113

195

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
7rpw-assembly1.cif.gz_E archaeal dna ligase and heterotrimeric pcna in complex with adenylated dna 0.8503 1 384
6q1v-assembly1.cif.gz_A human dna ligase 1 (e592r) bound to an adenylated, hydroxyl terminated dna nick 0.7908 7 512
6p0d-assembly1.cif.gz_A human dna ligase 1 (e346a/e592a) bound to an adenylated, hydroxyl terminated dna nick 0.79 2 512
7sx5-assembly1.cif.gz_A crystal structure of ligase i with nick duplexes containing mismatch a:c 0.788 8 512
6p0a-assembly1.cif.gz_A human dna ligase 1 bound to an adenylated, dideoxy terminated dna nick with 2 mm mg2+ 0.785 2 512
ID Description Score Start End Superfamily
af_P9WNV5_183_380_3.30.470.30 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;DNA ligase/mRNA capping enzyme 0.9914 186 383 3.30.470.30
af_P9WNV5_183_380_3.30.470.30 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;DNA ligase/mRNA capping enzyme 0.9864 186 383 3.30.470.30
af_P9WNV5_381_507_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.97 385 508 2.40.50.140
4eq5A02 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;DNA ligase/mRNA capping enzyme 0.9661 186 382 3.30.470.30
3rr5A03 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9504 386 512 2.40.50.140
ID Description Score Start End GO Terms
AF-X7Z545-F1-model_v4 ATP dependent DNA ligase domain protein 0.9866 190 360 GO:0003910
GO:0005524
GO:0006266
GO:0006281
GO:0006310
GO:0051301
AF-X7Z545-F1-model_v4 ATP dependent DNA ligase domain protein 0.9809 190 360 GO:0003910
GO:0005524
GO:0006266
GO:0006281
GO:0006310
GO:0051301
AF-A0A4Q3IX51-F1-model_v4 deleted 0.979 300 508
AF-A0A539DSG5-F1-model_v4 DNA ligase (ATP) (EC 6.5.1.1) 0.9704 419 508 GO:0003910
GO:0006281
GO:0006310
AF-A0A365Z6Z1-F1-model_v4 DNA ligase (ATP) (EC 6.5.1.1) 0.9701 383 508 GO:0003910
GO:0006266
GO:0006281
GO:0006310

Map