F338651

General Info

Members Datasets Scaffolds Average Seq Length
226 160 226 436

Family's Representative Sequence

Representative Sequence 3300005518|Ga0070699_100119144|Ga0070699_1001191441
Length 521
Sequence VERVRWLETEWSEDRVHESGRPVKAGEPEFKRPGNGAEEPGLTGVRASIVALKVRNRTPSQGTQESGSGKEGKMQEQPTAVPRATGTQQAGETPARQARRQRWQWVEASIWTDRMLAALETEVKGGVWFRLIDKVYSLKNLWSSWSKAARNQGSSGVDGITIDRYEKDVEANLQRVSEQLRTGTYQPKAIRRAYLPKAEGQMRPLGIPTVQDRIVQGAVRHVIEPVFEKEFAPHSYGFRPGKGCKDALRRLDELLKSGWRYVVDADLKSYFDTIPHQRLMQELSRRVADGRVLSLIEAFLEANIMDSVDQWTPTAGAPQGAVLSPLLSNIYLNPLDHLMADKGYEMVRYADDFVILCRSEQDAEAALELVKQWTAQAGLSLHPHKTRRIDTATEGFEFLGYRFDKGRHWPRDKSKKKLREAIRRHTRRANGDSLKVTIDRINPVLRGWFGYFKHSPKWAMQEVDGWVRMRLRSILRKRQKRTGRGRGADHQRWPNAFFAAHGLFSLAQARGWACQSMQVAH

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300004800 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
3 3300004801 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
4 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
5 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
7 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
8 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
9 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
10 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
11 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
12 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
13 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
14 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
15 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
16 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
17 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
18 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
19 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
20 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
21 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
22 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
23 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
24 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
25 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
26 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
27 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
28 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
29 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
30 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
31 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
32 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
33 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
34 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
35 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
36 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
37 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
38 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
39 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
40 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
41 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
42 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
43 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
44 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
45 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
46 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
47 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
48 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
49 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
50 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
51 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
52 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
53 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
54 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
55 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
56 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
57 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
58 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
59 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
60 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
61 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
62 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
63 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
64 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
65 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
66 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
67 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
68 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
69 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
70 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
71 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
72 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
73 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
74 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
75 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
76 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
77 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
78 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
79 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
80 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
81 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
82 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
83 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
84 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
85 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
86 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
87 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
88 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
89 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
90 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
91 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
116 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
120 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
121 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
122 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
123 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
124 3300031043 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA6 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
125 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
126 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
127 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
128 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
129 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
130 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
131 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
132 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
133 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
134 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
135 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
136 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
137 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
138 3300038996 Genetically engineered switchgrass root microbial communities from Knoxville, USA - plot19 Metagenome Rhizosphere
139 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
140 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
141 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
142 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
143 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
144 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
145 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
146 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
147 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
148 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
149 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
150 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
151 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
152 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
153 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
154 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
155 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
156 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
157 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
158 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
159 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
160 3300053731 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.58
Metatranscriptomes 4.42
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.1
Nodule 0
Rhizoplane 0.44
Rhizosphere 91.59
Stem 0
Stem Tuber 0
Unclassified 4.87

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10101361 3300003320 Bacteria 1948
2 Ga0058861_11514637 3300004800 Bacteria 1753
3 Ga0058860_12177263 3300004801 Bacteria 2137
4 Ga0058862_12572211 3300004803 Bacteria 1590
5 Ga0065714_10085781 3300005288 Unclassified 2128
6 Ga0065712_10088707 3300005290 Unclassified 2506
7 Ga0065712_10119291 3300005290 Bacteria 1694
8 Ga0065715_10094435 3300005293 Bacteria 4340
9 Ga0070658_10166542 3300005327 Bacteria 1850
10 Ga0070683_100026008 3300005329 Bacteria 5264
11 Ga0070683_100219535 3300005329 Unclassified 1807
12 Ga0070690_100066948 3300005330 Bacteria 2326
13 Ga0070680_100186962 3300005336 Bacteria 1745
14 Ga0070682_100087538 3300005337 Bacteria 2031
15 Ga0068868_100147270 3300005338 Unclassified 1937
16 Ga0070689_100120051 3300005340 Unclassified 2099
17 Ga0070687_100031777 3300005343 Bacteria 2592
18 Ga0070687_100039512 3300005343 Bacteria 2371
19 Ga0070687_100066452 3300005343 Bacteria 1921
20 Ga0070661_100117799 3300005344 Bacteria 1987
21 Ga0070692_10044097 3300005345 Bacteria 2296
22 Ga0070714_100168102 3300005435 Bacteria 1988
23 Ga0070714_100244866 3300005435 Bacteria 1656
24 Ga0070713_100174020 3300005436 Bacteria 1930
25 Ga0070713_100244442 3300005436 Bacteria 1635
26 Ga0070701_10028436 3300005438 Bacteria 2748
27 Ga0070700_100063504 3300005441 Bacteria 2336
28 Ga0070694_100087873 3300005444 Bacteria 2175
29 Ga0070694_100136272 3300005444 Bacteria 1779
30 Ga0070708_100221497 3300005445 Bacteria 1774
31 Ga0070681_10126196 3300005458 Bacteria 2491
32 Ga0068867_100130981 3300005459 Bacteria 1949
33 Ga0070685_10074650 3300005466 Bacteria 2018
34 Ga0070707_100087537 3300005468 Bacteria 3013
35 Ga0070698_100094157 3300005471 Bacteria 2975
36 Ga0070699_100119144 3300005518 Bacteria 2320
37 Ga0070699_100133463 3300005518 Bacteria 2189
38 Ga0070699_100194041 3300005518 Bacteria 1805
39 Ga0070684_100137111 3300005535 Unclassified 2211
40 Ga0070697_100140888 3300005536 Bacteria 2028
41 Ga0070686_100134035 3300005544 Bacteria 1716
42 Ga0070686_100146514 3300005544 Unclassified 1649
43 Ga0070695_100027748 3300005545 Bacteria 3509
44 Ga0070696_100167692 3300005546 Bacteria 1621
45 Ga0070665_100022749 3300005548 Bacteria 6310
46 Ga0070704_100036790 3300005549 Bacteria 3338
47 Ga0070704_100132634 3300005549 Bacteria 1933
48 Ga0068855_100100900 3300005563 Bacteria 3322
49 Ga0068855_100204727 3300005563 Bacteria 2220
50 Ga0068855_100369848 3300005563 Unclassified 1576
51 Ga0070664_100042090 3300005564 Bacteria 3857
52 Ga0068857_100147732 3300005577 Bacteria 2127
53 Ga0068856_100354886 3300005614 Bacteria 1485
54 Ga0070702_100066653 3300005615 Bacteria 2112
55 Ga0068852_100151954 3300005616 Bacteria 2154
56 Ga0068859_100178379 3300005617 Bacteria 2207
57 Ga0068859_100209717 3300005617 Bacteria 2034
58 Ga0068859_100265233 3300005617 Bacteria 1809
59 Ga0068859_100276721 3300005617 Bacteria 1771
60 Ga0068864_100088982 3300005618 Bacteria 2720
61 Ga0068864_100272948 3300005618 Bacteria 1576
62 Ga0068861_100037897 3300005719 Bacteria 3586
63 Ga0068863_100063594 3300005841 Bacteria 3490
64 Ga0068863_100313202 3300005841 Bacteria 1524
65 Ga0068858_100126898 3300005842 Bacteria 2390
66 Ga0068858_100172721 3300005842 Bacteria 2039
67 Ga0068862_100161477 3300005844 Bacteria 2000
68 Ga0081455_10103819 3300005937 Bacteria 2275
69 Ga0081540_1051385 3300005983 Bacteria 2038
70 Ga0075362_10040194 3300006177 Bacteria 2059
71 Ga0075366_10087104 3300006195 Bacteria 1869
72 Ga0097621_100264857 3300006237 Unclassified 1509
73 Ga0075428_100078098 3300006844 Bacteria 3613
74 Ga0075431_100177235 3300006847 Bacteria 2189
75 Ga0075429_100027813 3300006880 Bacteria 4909
76 Ga0097620_100178379 3300006931 Bacteria 2207
77 Ga0097620_100209706 3300006931 Bacteria 2034
78 Ga0097620_100265251 3300006931 Bacteria 1809
79 Ga0097620_100276723 3300006931 Bacteria 1771
80 Ga0075435_100156904 3300007076 Bacteria 1915
81 Ga0099795_10031902 3300007788 Bacteria 1818
82 Ga0105240_10068603 3300009093 Bacteria 4391
83 Ga0105240_10191799 3300009093 Bacteria 2402
84 Ga0105245_10144416 3300009098 Bacteria 2244
85 Ga0105247_10088529 3300009101 Bacteria 1962
86 Ga0114129_10305706 3300009147 Bacteria 2118
87 Ga0114129_10314928 3300009147 Bacteria 2082
88 Ga0105248_10200262 3300009177 Bacteria 2250
89 Ga0105248_10253225 3300009177 Unclassified 1982
90 Ga0105238_10123854 3300009551 Bacteria 2564
91 Ga0105238_10167676 3300009551 Unclassified 2172
92 Ga0105249_10057123 3300009553 Bacteria 3574
93 Ga0105249_10118660 3300009553 Bacteria 2511
94 Ga0105239_10131825 3300010375 Unclassified 2781
95 Ga0105246_10078196 3300011119 Bacteria 2349
96 Ga0105246_10133730 3300011119 Bacteria 1856
97 Ga0157370_10090926 3300013104 Bacteria 2866
98 Ga0157369_10153235 3300013105 Bacteria 2436
99 Ga0157374_10127593 3300013296 Unclassified 2459
100 Ga0157378_10161372 3300013297 Bacteria 2096
101 Ga0163162_10129549 3300013306 Unclassified 2631
102 Ga0157372_10199636 3300013307 Unclassified 2317
103 Ga0157375_10310163 3300013308 Bacteria 1742
104 Ga0157375_10310508 3300013308 Bacteria 1741
105 Ga0163163_10124172 3300014325 Bacteria 2618
106 Ga0163163_10153835 3300014325 Bacteria 2343
107 Ga0163163_10166212 3300014325 Unclassified 2252
108 Ga0157380_10176538 3300014326 Bacteria 1872
109 Ga0157377_10084917 3300014745 Unclassified 1858
110 Ga0157379_10120494 3300014968 Bacteria 2360
111 Ga0157379_10130541 3300014968 Bacteria 2261
112 Ga0157379_10166067 3300014968 Bacteria 1992
113 Ga0157379_10260966 3300014968 Bacteria 1574
114 Ga0197907_10336058 3300020069 Bacteria 2116
115 Ga0206355_1153824 3300020076 Bacteria 1875
116 Ga0206354_10144861 3300020081 Bacteria 1863
117 Ga0206353_10495646 3300020082 Bacteria 1496
118 Ga0206353_12041384 3300020082 Bacteria 1916
119 Ga0213873_10010528 3300021358 Bacteria 1952
120 Ga0213872_10045474 3300021361 Bacteria 1997
121 Ga0213874_10014546 3300021377 Bacteria 2059
122 Ga0213876_10102111 3300021384 Bacteria 1520
123 Ga0213875_10052946 3300021388 Bacteria 1901
124 Ga0213871_10012607 3300021441 Bacteria 1968
125 Ga0213871_10013409 3300021441 Bacteria 1925
126 Ga0224712_10056338 3300022467 Bacteria 1549
127 Ga0207653_10023089 3300025885 Bacteria 1979
128 Ga0207643_10065851 3300025908 Bacteria 2076
129 Ga0207705_10072776 3300025909 Bacteria 2493
130 Ga0207707_10156731 3300025912 Bacteria 1991
131 Ga0207695_10094819 3300025913 Bacteria 2990
132 Ga0207695_10200157 3300025913 Unclassified 1912
133 Ga0207693_10126671 3300025915 Bacteria 2007
134 Ga0207662_10050328 3300025918 Bacteria 2475
135 Ga0207662_10078249 3300025918 Bacteria 2013
136 Ga0207662_10081214 3300025918 Bacteria 1979
137 Ga0207649_10101004 3300025920 Bacteria 1909
138 Ga0207694_10150034 3300025924 Unclassified 1877
139 Ga0207687_10117178 3300025927 Bacteria 1986
140 Ga0207700_10131856 3300025928 Bacteria 2041
141 Ga0207700_10162915 3300025928 Bacteria 1854
142 Ga0207664_10139521 3300025929 Bacteria 2049
143 Ga0207664_10195300 3300025929 Bacteria 1744
144 Ga0207644_10172643 3300025931 Bacteria 1689
145 Ga0207670_10105494 3300025936 Bacteria 2020
146 Ga0207711_10146132 3300025941 Bacteria 2130
147 Ga0207689_10082985 3300025942 Bacteria 2635
148 Ga0207661_10128566 3300025944 Bacteria 2166
149 Ga0207661_10190053 3300025944 Unclassified 1800
150 Ga0207661_10296122 3300025944 Unclassified 1449
151 Ga0207667_10234330 3300025949 Bacteria 1879
152 Ga0207667_10284656 3300025949 Bacteria 1689
153 Ga0207712_10057924 3300025961 Bacteria 2736
154 Ga0207712_10135953 3300025961 Unclassified 1880
155 Ga0207712_10140917 3300025961 Bacteria 1850
156 Ga0207658_10186480 3300025986 Bacteria 1721
157 Ga0207677_10113181 3300026023 Bacteria 2025
158 Ga0207677_10181114 3300026023 Unclassified 1658
159 Ga0207703_10118952 3300026035 Bacteria 2265
160 Ga0207703_10170289 3300026035 Bacteria 1915
161 Ga0207708_10128560 3300026075 Bacteria 1979
162 Ga0207641_10161363 3300026088 Bacteria 2038
163 Ga0207641_10230035 3300026088 Bacteria 1723
164 Ga0207648_10177463 3300026089 Bacteria 1884
165 Ga0207676_10228361 3300026095 Bacteria 1662
166 Ga0207675_100080885 3300026118 Bacteria 3046
167 Ga0207698_10144041 3300026142 Bacteria 2058
168 Ga0268266_10015903 3300028379 Bacteria 6439
169 Ga0268265_10142648 3300028380 Bacteria 2007
170 Ga0265318_10042728 3300028577 Bacteria 1719
171 Ga0265336_10013663 3300028666 Bacteria 2703
172 Ga0265338_10129841 3300028800 Bacteria 1992
173 Ga0265779_100297 3300031043 Bacteria 1808
174 Ga0307508_10153131 3300031616 Unclassified 1910
175 Ga0373926_0026906 3300035083 Unclassified 2014
176 Ga0373929_0009716 3300035085 Unclassified 1788
177 Ga0373940_0007523 3300035088 Bacteria 2462
178 Ga0373939_0005956 3300035114 Bacteria 2920
179 Ga0373941_0013325 3300035115 Bacteria 2171
180 Ga0373941_0030582 3300035115 Bacteria 1597
181 Ga0373960_0009155 3300035121 Bacteria 2391
182 Ga0373942_0012952 3300035207 Bacteria 1999
183 Ga0373961_0020242 3300035241 Bacteria 1757
184 Ga0373962_0010089 3300035242 Bacteria 2349
185 Ga0373931_0047310 3300035691 Bacteria 2276
186 Ga0373931_0065999 3300035691 Unclassified 1962
187 Ga0373931_0071390 3300035691 Bacteria 1896
188 Ga0395898_0341969 3300037466 Bacteria 1427
189 Ga0395905_0176545 3300037471 Bacteria 2005
190 Ga0242420_005044 3300038996 Bacteria 2026
191 Ga0400489_54830 3300039093 Bacteria 2178
192 Ga0436365_1190058 3300039437 Bacteria 1623
193 Ga0436360_0692020 3300039438 Bacteria 1864
194 Ga0436360_0736224 3300039438 Bacteria 2251
195 Ga0436360_0820465 3300039438 Bacteria 5736
196 Ga0436361_1214105 3300039447 Bacteria 2404
197 Ga0436363_0684866 3300039450 Bacteria 2297
198 Ga0436363_0846568 3300039450 Bacteria 2122
199 Ga0436363_1235542 3300039450 Bacteria 2639
200 Ga0436362_0046808 3300039453 Bacteria 4990
201 Ga0436362_0429723 3300039453 Bacteria 1329
202 Ga0436362_0913950 3300039453 Bacteria 2017
203 Ga0451577_0073284 3300042876 Bacteria 3055
204 Ga0451577_0131032 3300042876 Bacteria 2249
205 Ga0451577_0186948 3300042876 Bacteria 1868
206 Ga0451577_0197301 3300042876 Unclassified 1816
207 Ga0453684_0210792 3300044712 Bacteria 2258
208 Ga0453684_0303592 3300044712 Unclassified 1813
209 Ga0453684_0415660 3300044712 Bacteria 1503
210 Ga0451576_0143409 3300045051 Bacteria 2491
211 Ga0451576_0181800 3300045051 Bacteria 2195
212 Ga0451576_0187714 3300045051 Bacteria 2158
213 Ga0451576_0207165 3300045051 Bacteria 2047
214 Ga0495653_0198125 3300046463 Bacteria 1365
215 Ga0495598_0011877 3300046537 Bacteria 2122
216 Ga0495647_0026737 3300046681 Bacteria 2116
217 Ga0496106_0122470 3300048909 Bacteria 2034
218 Ga0501034_0198980 3300049571 Bacteria 1962
219 Ga0501044_0160283 3300049823 Bacteria 2227
220 nmdc:mga03683_42654_c1 3300050489 Bacteria 1868
221 nmdc:mga05p37_266751_c1 3300050507 Bacteria 2047
222 nmdc:mga06r32_183959_c1 3300050510 Bacteria 2076
223 Ga0500642_0057911 3300053130 Bacteria 1730
224 Ga0500588_0023513 3300053146 Bacteria 1690
225 Ga0500616_0003910 3300053153 Bacteria 10955
226 Ga0500609_000959 3300053731 Bacteria 4321

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037466 Ga0395898_0341969 Ga0395898_0341969_19_1095 357
2 3300025944 Ga0207661_10190053 Ga0207661_101900531 371
3 3300039453 Ga0436362_0429723 Ga0436362_0429723_10_1179 386
4 3300009177 Ga0105248_10253225 Ga0105248_102532252 389
5 3300009101 Ga0105247_10088529 Ga0105247_100885292 396
6 3300014325 Ga0163163_10124172 Ga0163163_101241722 396
7 3300014968 Ga0157379_10130541 Ga0157379_101305413 396
8 3300005435 Ga0070714_100244866 Ga0070714_1002448661 403
9 3300005436 Ga0070713_100244442 Ga0070713_1002444421 403
10 3300005614 Ga0068856_100354886 Ga0068856_1003548862 403
11 3300009093 Ga0105240_10191799 Ga0105240_101917992 403
12 3300009551 Ga0105238_10123854 Ga0105238_101238542 403
13 3300021361 Ga0213872_10045474 Ga0213872_100454741 403
14 3300025949 Ga0207667_10284656 Ga0207667_102846562 403
15 3300011119 Ga0105246_10133730 Ga0105246_101337301 404
16 3300013308 Ga0157375_10310163 Ga0157375_103101631 404
17 3300014968 Ga0157379_10260966 Ga0157379_102609662 404
18 3300005841 Ga0068863_100063594 Ga0068863_1000635942 405
19 3300039093 Ga0400489_54830 Ga0400489_54830_141_1427 405
20 3300004801 Ga0058860_12177263 Ga0058860_121772632 406
21 3300005327 Ga0070658_10166542 Ga0070658_101665421 406
22 3300005618 Ga0068864_100272948 Ga0068864_1002729481 406
23 3300005842 Ga0068858_100172721 Ga0068858_1001727212 406
24 3300005937 Ga0081455_10103819 Ga0081455_101038193 406
25 3300006844 Ga0075428_100078098 Ga0075428_1000780983 406
26 3300006847 Ga0075431_100177235 Ga0075431_1001772352 406
27 3300006880 Ga0075429_100027813 Ga0075429_1000278134 406
28 3300009147 Ga0114129_10305706 Ga0114129_103057062 406
29 3300009147 Ga0114129_10314928 Ga0114129_103149281 406
30 3300009177 Ga0105248_10200262 Ga0105248_102002622 406
31 3300009553 Ga0105249_10057123 Ga0105249_100571232 406
32 3300011119 Ga0105246_10078196 Ga0105246_100781962 406
33 3300013308 Ga0157375_10310508 Ga0157375_103105081 406
34 3300014325 Ga0163163_10153835 Ga0163163_101538351 406
35 3300014326 Ga0157380_10176538 Ga0157380_101765381 406
36 3300014968 Ga0157379_10166067 Ga0157379_101660671 406
37 3300021384 Ga0213876_10102111 Ga0213876_101021111 406
38 3300025909 Ga0207705_10072776 Ga0207705_100727763 406
39 3300026088 Ga0207641_10161363 Ga0207641_101613631 406
40 3300026095 Ga0207676_10228361 Ga0207676_102283611 406
41 3300035115 Ga0373941_0030582 Ga0373941_0030582_227_1447 406
42 3300038996 Ga0242420_005044 Ga0242420_005044_616_1839 406
43 3300039437 Ga0436365_1190058 Ga0436365_1190058_225_1448 406
44 3300039438 Ga0436360_0736224 Ga0436360_0736224_393_1613 406
45 3300039438 Ga0436360_0820465 Ga0436360_0820465_200_1420 406
46 3300039450 Ga0436363_0846568 Ga0436363_0846568_192_1415 406
47 3300039453 Ga0436362_0913950 Ga0436362_0913950_142_1362 406
48 3300042876 Ga0451577_0131032 Ga0451577_0131032_306_1529 406
49 3300044712 Ga0453684_0415660 Ga0453684_0415660_117_1340 406
50 3300045051 Ga0451576_0143409 Ga0451576_0143409_570_1793 406
51 3300046463 Ga0495653_0198125 Ga0495653_0198125_16_1245 406
52 3300049571 Ga0501034_0198980 Ga0501034_0198980_181_1401 406
53 3300050489 nmdc:mga03683_42654_c1 nmdc:mga03683_42654_c1_93_1313 406
54 3300050507 nmdc:mga05p37_266751_c1 nmdc:mga05p37_266751_c1_119_1342 406
55 3300050510 nmdc:mga06r32_183959_c1 nmdc:mga06r32_183959_c1_626_1849 406
56 3300053130 Ga0500642_0057911 Ga0500642_0057911_436_1656 406
57 3300053146 Ga0500588_0023513 Ga0500588_0023513_176_1396 406
58 3300053731 Ga0500609_000959 Ga0500609_000959_223_1443 406
59 3300021441 Ga0213871_10012607 Ga0213871_100126071 423
60 3300039438 Ga0436360_0692020 Ga0436360_0692020_257_1588 423
61 3300005458 Ga0070681_10126196 Ga0070681_101261962 424
62 3300025912 Ga0207707_10156731 Ga0207707_101567311 424
63 3300005329 Ga0070683_100026008 Ga0070683_1000260085 425
64 3300005336 Ga0070680_100186962 Ga0070680_1001869621 425
65 3300025944 Ga0207661_10128566 Ga0207661_101285661 425
66 3300020076 Ga0206355_1153824 Ga0206355_11538241 426
67 3300004800 Ga0058861_11514637 Ga0058861_115146372 429
68 3300004803 Ga0058862_12572211 Ga0058862_125722111 429
69 3300020069 Ga0197907_10336058 Ga0197907_103360582 429
70 3300020082 Ga0206353_10495646 Ga0206353_104956461 429
71 3300005343 Ga0070687_100031777 Ga0070687_1000317772 430
72 3300005617 Ga0068859_100209717 Ga0068859_1002097172 430
73 3300006931 Ga0097620_100209706 Ga0097620_1002097061 430
74 3300025918 Ga0207662_10078249 Ga0207662_100782491 430
75 3300039450 Ga0436363_1235542 Ga0436363_1235542_405_1733 431
76 3300005343 Ga0070687_100066452 Ga0070687_1000664521 432
77 3300014968 Ga0157379_10120494 Ga0157379_101204942 432
78 3300005288 Ga0065714_10085781 Ga0065714_100857812 433
79 3300025961 Ga0207712_10135953 Ga0207712_101359532 433
80 3300005617 Ga0068859_100265233 Ga0068859_1002652332 434
81 3300006931 Ga0097620_100265251 Ga0097620_1002652512 434
82 3300025941 Ga0207711_10146132 Ga0207711_101461321 434
83 3300026089 Ga0207648_10177463 Ga0207648_101774631 434
84 3300037471 Ga0395905_0176545 Ga0395905_0176545_52_1395 434
85 3300049823 Ga0501044_0160283 Ga0501044_0160283_209_1603 435
86 3300005329 Ga0070683_100219535 Ga0070683_1002195351 436
87 3300005337 Ga0070682_100087538 Ga0070682_1000875382 436
88 3300005340 Ga0070689_100120051 Ga0070689_1001200512 436
89 3300005466 Ga0070685_10074650 Ga0070685_100746502 436
90 3300005544 Ga0070686_100146514 Ga0070686_1001465141 436
91 3300005615 Ga0070702_100066653 Ga0070702_1000666531 436
92 3300009093 Ga0105240_10068603 Ga0105240_100686031 436
93 3300009098 Ga0105245_10144416 Ga0105245_101444161 436
94 3300009551 Ga0105238_10167676 Ga0105238_101676763 436
95 3300013297 Ga0157378_10161372 Ga0157378_101613722 436
96 3300013307 Ga0157372_10199636 Ga0157372_101996361 436
97 3300025924 Ga0207694_10150034 Ga0207694_101500343 436
98 3300025927 Ga0207687_10117178 Ga0207687_101171783 436
99 3300025944 Ga0207661_10296122 Ga0207661_102961221 436
100 3300005563 Ga0068855_100204727 Ga0068855_1002047272 437
101 3300005616 Ga0068852_100151954 Ga0068852_1001519542 437
102 3300013104 Ga0157370_10090926 Ga0157370_100909262 437
103 3300013105 Ga0157369_10153235 Ga0157369_101532352 437
104 3300022467 Ga0224712_10056338 Ga0224712_100563381 437
105 3300025913 Ga0207695_10094819 Ga0207695_100948193 437
106 3300025928 Ga0207700_10162915 Ga0207700_101629151 437
107 3300025929 Ga0207664_10139521 Ga0207664_101395211 437
108 3300026142 Ga0207698_10144041 Ga0207698_101440411 437
109 3300046537 Ga0495598_0011877 Ga0495598_0011877_543_1862 437
110 3300005841 Ga0068863_100313202 Ga0068863_1003132022 438
111 3300026088 Ga0207641_10230035 Ga0207641_102300352 438
112 3300035691 Ga0373931_0071390 Ga0373931_0071390_100_1428 438
113 3300042876 Ga0451577_0197301 Ga0451577_0197301_458_1786 438
114 3300044712 Ga0453684_0303592 Ga0453684_0303592_455_1783 438
115 3300045051 Ga0451576_0181800 Ga0451576_0181800_456_1784 438
116 3300005444 Ga0070694_100136272 Ga0070694_1001362721 439
117 3300005471 Ga0070698_100094157 Ga0070698_1000941571 439
118 3300005518 Ga0070699_100133463 Ga0070699_1001334632 439
119 3300005518 Ga0070699_100194041 Ga0070699_1001940411 439
120 3300005536 Ga0070697_100140888 Ga0070697_1001408882 439
121 3300005544 Ga0070686_100134035 Ga0070686_1001340351 439
122 3300005549 Ga0070704_100132634 Ga0070704_1001326341 439
123 3300005563 Ga0068855_100100900 Ga0068855_1001009004 439
124 3300007788 Ga0099795_10031902 Ga0099795_100319021 439
125 3300020081 Ga0206354_10144861 Ga0206354_101448611 439
126 3300020082 Ga0206353_12041384 Ga0206353_120413841 439
127 3300025913 Ga0207695_10200157 Ga0207695_102001571 439
128 3300025915 Ga0207693_10126671 Ga0207693_101266711 439
129 3300025929 Ga0207664_10195300 Ga0207664_101953001 439
130 3300025949 Ga0207667_10234330 Ga0207667_102343301 439
131 3300025961 Ga0207712_10140917 Ga0207712_101409171 439
132 3300039447 Ga0436361_1214105 Ga0436361_1214105_1057_2385 439
133 3300046681 Ga0495647_0026737 Ga0495647_0026737_590_1954 439
134 3300048909 Ga0496106_0122470 Ga0496106_0122470_520_1848 439
135 3300005290 Ga0065712_10088707 Ga0065712_100887072 440
136 3300005535 Ga0070684_100137111 Ga0070684_1001371112 440
137 3300005563 Ga0068855_100369848 Ga0068855_1003698481 440
138 3300009553 Ga0105249_10118660 Ga0105249_101186603 440
139 3300010375 Ga0105239_10131825 Ga0105239_101318253 440
140 3300013296 Ga0157374_10127593 Ga0157374_101275933 440
141 3300013306 Ga0163162_10129549 Ga0163162_101295493 440
142 3300014325 Ga0163163_10166212 Ga0163163_101662122 440
143 3300014745 Ga0157377_10084917 Ga0157377_100849172 440
144 3300035085 Ga0373929_0009716 Ga0373929_0009716_349_1683 440
145 3300035691 Ga0373931_0065999 Ga0373931_0065999_163_1497 440
146 3300005330 Ga0070690_100066948 Ga0070690_1000669481 441
147 3300005338 Ga0068868_100147270 Ga0068868_1001472701 441
148 3300005343 Ga0070687_100039512 Ga0070687_1000395122 441
149 3300005617 Ga0068859_100178379 Ga0068859_1001783792 441
150 3300005842 Ga0068858_100126898 Ga0068858_1001268983 441
151 3300006931 Ga0097620_100178379 Ga0097620_1001783793 441
152 3300025918 Ga0207662_10050328 Ga0207662_100503282 441
153 3300025931 Ga0207644_10172643 Ga0207644_101726432 441
154 3300026023 Ga0207677_10181114 Ga0207677_101811142 441
155 3300026035 Ga0207703_10118952 Ga0207703_101189523 441
156 3300028577 Ga0265318_10042728 Ga0265318_100427282 441
157 3300028666 Ga0265336_10013663 Ga0265336_100136631 441
158 3300028800 Ga0265338_10129841 Ga0265338_101298411 441
159 3300031616 Ga0307508_10153131 Ga0307508_101531311 441
160 3300035088 Ga0373940_0007523 Ga0373940_0007523_839_2182 441
161 3300035114 Ga0373939_0005956 Ga0373939_0005956_793_2136 441
162 3300035115 Ga0373941_0013325 Ga0373941_0013325_108_1451 441
163 3300035121 Ga0373960_0009155 Ga0373960_0009155_477_1820 441
164 3300035207 Ga0373942_0012952 Ga0373942_0012952_184_1527 441
165 3300035241 Ga0373961_0020242 Ga0373961_0020242_140_1483 441
166 3300035242 Ga0373962_0010089 Ga0373962_0010089_663_2006 441
167 3300035691 Ga0373931_0047310 Ga0373931_0047310_532_1875 441
168 3300042876 Ga0451577_0073284 Ga0451577_0073284_156_1499 441
169 3300042876 Ga0451577_0186948 Ga0451577_0186948_429_1775 441
170 3300044712 Ga0453684_0210792 Ga0453684_0210792_81_1424 441
171 3300045051 Ga0451576_0187714 Ga0451576_0187714_210_1553 441
172 3300021358 Ga0213873_10010528 Ga0213873_100105282 442
173 3300005436 Ga0070713_100174020 Ga0070713_1001740203 443
174 3300007076 Ga0075435_100156904 Ga0075435_1001569042 443
175 3300021388 Ga0213875_10052946 Ga0213875_100529461 443
176 3300021441 Ga0213871_10013409 Ga0213871_100134092 443
177 3300025928 Ga0207700_10131856 Ga0207700_101318562 443
178 3300031043 Ga0265779_100297 Ga0265779_1002971 443
179 3300035083 Ga0373926_0026906 Ga0373926_0026906_514_1866 443
180 3300039453 Ga0436362_0046808 Ga0436362_0046808_1979_3310 443
181 3300045051 Ga0451576_0207165 Ga0451576_0207165_493_1833 443
182 3300005290 Ga0065712_10119291 Ga0065712_101192911 444
183 3300005293 Ga0065715_10094435 Ga0065715_100944352 444
184 3300005344 Ga0070661_100117799 Ga0070661_1001177992 444
185 3300005345 Ga0070692_10044097 Ga0070692_100440972 444
186 3300005435 Ga0070714_100168102 Ga0070714_1001681021 444
187 3300005438 Ga0070701_10028436 Ga0070701_100284361 444
188 3300005441 Ga0070700_100063504 Ga0070700_1000635042 444
189 3300005444 Ga0070694_100087873 Ga0070694_1000878731 444
190 3300005445 Ga0070708_100221497 Ga0070708_1002214971 444
191 3300005459 Ga0068867_100130981 Ga0068867_1001309812 444
192 3300005468 Ga0070707_100087537 Ga0070707_1000875373 444
193 3300005545 Ga0070695_100027748 Ga0070695_1000277482 444
194 3300005546 Ga0070696_100167692 Ga0070696_1001676921 444
195 3300005549 Ga0070704_100036790 Ga0070704_1000367901 444
196 3300005564 Ga0070664_100042090 Ga0070664_1000420904 444
197 3300005577 Ga0068857_100147732 Ga0068857_1001477323 444
198 3300005617 Ga0068859_100276721 Ga0068859_1002767211 444
199 3300005719 Ga0068861_100037897 Ga0068861_1000378972 444
200 3300005844 Ga0068862_100161477 Ga0068862_1001614772 444
201 3300006931 Ga0097620_100276723 Ga0097620_1002767231 444
202 3300025885 Ga0207653_10023089 Ga0207653_100230892 444
203 3300025908 Ga0207643_10065851 Ga0207643_100658511 444
204 3300025918 Ga0207662_10081214 Ga0207662_100812142 444
205 3300025920 Ga0207649_10101004 Ga0207649_101010042 444
206 3300025936 Ga0207670_10105494 Ga0207670_101054942 444
207 3300025942 Ga0207689_10082985 Ga0207689_100829852 444
208 3300025961 Ga0207712_10057924 Ga0207712_100579241 444
209 3300026023 Ga0207677_10113181 Ga0207677_101131812 444
210 3300026035 Ga0207703_10170289 Ga0207703_101702891 444
211 3300026075 Ga0207708_10128560 Ga0207708_101285602 444
212 3300026118 Ga0207675_100080885 Ga0207675_1000808852 444
213 3300028380 Ga0268265_10142648 Ga0268265_101426482 444
214 3300005983 Ga0081540_1051385 Ga0081540_10513852 445
215 3300006177 Ga0075362_10040194 Ga0075362_100401942 445
216 3300006195 Ga0075366_10087104 Ga0075366_100871041 445
217 3300006237 Ga0097621_100264857 Ga0097621_1002648571 445
218 3300005518 Ga0070699_100119144 Ga0070699_1001191441 446
219 3300021377 Ga0213874_10014546 Ga0213874_100145462 446
220 3300039450 Ga0436363_0684866 Ga0436363_0684866_393_1736 446
221 3300003320 rootH2_10101361 rootH2_101013612 447
222 3300005548 Ga0070665_100022749 Ga0070665_1000227493 447
223 3300005618 Ga0068864_100088982 Ga0068864_1000889822 447
224 3300025986 Ga0207658_10186480 Ga0207658_101864801 447
225 3300028379 Ga0268266_10015903 Ga0268266_100159033 447
226 3300053153 Ga0500616_0003910 Ga0500616_0003910_2611_3963 447

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00078

RVT_1

Reverse transcriptase (RNA-dependent DNA polymerase)

195

403

0.95

PF08388

GIIM

Group II intron, maturase-specific domain

415

493

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
6ar1-assembly1.cif.gz_A structure of a thermostable group ii intron reverse transcriptase with template-primer and its functional and evolutionary implications (rt/duplex (nat)) 0.9003 57 441
6ar1-assembly2.cif.gz_D structure of a thermostable group ii intron reverse transcriptase with template-primer and its functional and evolutionary implications (rt/duplex (nat)) 0.8964 57 441
5hhl-assembly1.cif.gz_B reverse transcriptase domain of group ii intron maturase from eubacterium rectale in p21 space group 0.8963 55 329
5irg-assembly1.cif.gz_D reverse transcriptase domain of group ii intron maturase from roseburia intestinalis in p212121 space group 0.8946 55 329
5irg-assembly1.cif.gz_A reverse transcriptase domain of group ii intron maturase from roseburia intestinalis in p212121 space group 0.8924 57 329
ID Description Score Start End Superfamily
af_P05511_299_561_3.20.20.210 Alpha Beta;Alpha-Beta Barrel;TIM Barrel; 0.9481 122 326 3.20.20.210
af_Q47688_90_332_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.912 121 326 3.30.70.270
af_Q54NE9_513_706_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.8951 122 285 3.30.70.270
af_Q54EA8_349_594_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.8885 122 331 3.30.70.270
af_A0A0G2L818_234_482_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.8777 131 316 3.30.70.270
ID Description Score Start End GO Terms
AF-A0A3M1F230-F1-model_v4 Group II intron reverse transcriptase/maturase (EC 2.7.7.49) 0.9977 42 322 GO:0003720
AF-A0A3M1F230-F1-model_v4 Group II intron reverse transcriptase/maturase (EC 2.7.7.49) 0.9942 42 322 GO:0003720
AF-A0A4Y7X892-F1-model_v4 deleted 0.9928 59 166
AF-A0A1U7CY11-F1-model_v4 Group II intron-encoded protein LtrA 0.9926 42 336
AF-X1ETF0-F1-model_v4 Reverse transcriptase domain-containing protein 0.9863 120 318

Feature Viewer

pLDDT pTM Quality
88.68 0.83 High
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Predicted Structure (AlphaFold2)

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