F338208

General Info

Members Datasets Scaffolds Average Seq Length
225 123 442 372

Family's Representative Sequence

Representative Sequence 3300049569|Ga0501032_0031047|Ga0501032_0031047_789_2048
Length 419
Sequence MATAGVVPCTAWSHDRRIGIKGSFNSGTASRRSRPRPPWEECMFRKSVAAASLGAVLFAAAFGAPSARADDITIAVAGPMTGALAAFGEQLRRGSEMAVKDINAAGGVLGKQLKLEIGDDQCDPKQAVQVANDLAQKGVVFVAGHFCSGSSIPASAVYADEDILEISPASTNPSYTEDPYKKGITTIFRTCGRDDKQGSFAGPWIAKTYPGKNVAVLDDRSAYGQGLADETAKNMEANGAKPAMRETYVANEKDFSALISKMKQAKIDVVYVGGYHNDSALMMRQAREQGLQAAFISADATNSAEFWSISGPAGEGMRFSDASSAVNLDSAKQAVAEFRAENYEPEGYTLSSYAAIQAWAAAAAKAGTTDSEKVAEAMRANTIPTVIGDLSWDEKGDLKQIRYSWFIWHDGKYAEEPIN

Samples

Sample ID Description Type Environment
1 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
2 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
3 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
4 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
8 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
16 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
17 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
18 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
21 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
22 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
23 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
28 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
29 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
30 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
31 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
32 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
33 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
34 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
37 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
39 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
41 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
48 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
50 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
51 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
52 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
53 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
54 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
55 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
56 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
57 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
58 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
59 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
60 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
61 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
62 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
63 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
64 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
65 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
66 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
67 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
68 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
69 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
70 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
84 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
85 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
86 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
87 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
88 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
89 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
90 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
91 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
92 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
93 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
94 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
95 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
96 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
97 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
100 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
101 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
102 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
103 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
104 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
105 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
106 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
107 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
108 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
109 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
110 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
111 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
112 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
113 3300053731 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere Metagenome Endosphere
114 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
115 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
116 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
117 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
118 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
119 3300059493 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 19R_SW_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
120 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
121 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
122 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
123 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.33
Metatranscriptomes 1.78
Isolates 0.89

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.22
Nodule 0
Rhizoplane 0.44
Rhizosphere 82.67
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501032_0031047 3300049569 Bacteria 3664
2 JGI25153J46596_10000035 3300003215 Bacteria 189737
3 JGI25153J46596_10000148 3300003215 Bacteria 70861
4 Ga0055536_1006656 3300003781 Bacteria 5323
5 Ga0058862_11855625 3300004803 Bacteria 1208
6 Ga0070690_100031109 3300005330 Bacteria 3322
7 Ga0070674_100018818 3300005356 Bacteria 4375
8 Ga0070709_10024800 3300005434 Bacteria 3535
9 Ga0070705_100220669 3300005440 Bacteria 1312
10 Ga0070706_100171578 3300005467 Bacteria 2025
11 Ga0070698_100232162 3300005471 Bacteria 1778
12 Ga0070699_100209100 3300005518 Bacteria 1736
13 Ga0070679_100020094 3300005530 Bacteria 6509
14 Ga0070696_100054490 3300005546 Bacteria 2787
15 Ga0068856_100163128 3300005614 Bacteria 2240
16 Ga0068861_100038100 3300005719 Bacteria 3577
17 Ga0068862_100010706 3300005844 Bacteria 7573
18 Ga0068862_100011495 3300005844 Bacteria 7308
19 Ga0081538_10017256 3300005981 Bacteria 5487
20 Ga0081540_1010287 3300005983 Bacteria 6347
21 Ga0075430_100112367 3300006846 Bacteria 2271
22 Ga0075431_100007234 3300006847 Bacteria 11044
23 Ga0075429_100068340 3300006880 Bacteria 3092
24 Ga0068865_100044645 3300006881 Bacteria 3034
25 Ga0111539_10000125 3300009094 Bacteria 86127
26 Ga0114129_10036584 3300009147 Bacteria 6931
27 Ga0114129_10154431 3300009147 Bacteria 3140
28 Ga0105237_10426089 3300009545 Bacteria 1332
29 Ga0105238_10214012 3300009551 Bacteria 1903
30 Ga0105028_101941 3300009993 Bacteria 2172
31 Ga0157370_10081062 3300013104 Bacteria 3055
32 Ga0157372_10295433 3300013307 Bacteria 1884
33 Ga0163163_10275691 3300014325 Bacteria 1733
34 Ga0163163_10308270 3300014325 Bacteria 1636
35 Ga0157380_10051225 3300014326 Bacteria 3264
36 Ga0206352_10246224 3300020078 Bacteria 1197
37 Ga0224712_10108877 3300022467 Bacteria 1186
38 Ga0209148_1000690 3300025254 Bacteria 27755
39 Ga0209148_1002004 3300025254 Bacteria 7991
40 Ga0209455_1000236 3300025272 Bacteria 69542
41 Ga0209455_1000250 3300025272 Bacteria 64478
42 Ga0209675_1001777 3300025291 Bacteria 11775
43 Ga0209676_1000197 3300025292 Bacteria 135043
44 Ga0209676_1008074 3300025292 Bacteria 4781
45 Ga0209758_1000060 3300025297 Bacteria 324326
46 Ga0209758_1000169 3300025297 Bacteria 149782
47 Ga0209758_1015933 3300025297 Bacteria 3854
48 Ga0209050_1011530 3300025298 Bacteria 4172
49 Ga0209050_1022916 3300025298 Bacteria 2219
50 Ga0207426_1011559 3300025302 Bacteria 3354
51 Ga0209257_1003853 3300025304 Bacteria 12272
52 Ga0207671_10219224 3300025914 Bacteria 1490
53 Ga0207660_10058132 3300025917 Bacteria 2772
54 Ga0207669_10018530 3300025937 Bacteria 3602
55 Ga0207704_10040534 3300025938 Bacteria 2723
56 Ga0207675_100066968 3300026118 Bacteria 3357
57 Ga0207428_10000078 3300027907 Bacteria 136571
58 Ga0268265_10026726 3300028380 Bacteria 4108
59 Ga0268265_10072340 3300028380 Bacteria 2689
60 Ga0265340_10038030 3300031247 Bacteria 2382
61 Ga0265339_10014490 3300031249 Bacteria 4750
62 Ga0265331_10014180 3300031250 Bacteria 4254
63 Ga0265327_10001060 3300031251 Bacteria 38391
64 Ga0307408_100087075 3300031548 Bacteria 2349
65 Ga0265313_10097263 3300031595 Bacteria 1311
66 Ga0307508_10013858 3300031616 Bacteria 7356
67 Ga0307516_10190844 3300031730 Bacteria 1775
68 Ga0307413_10255687 3300031824 Bacteria 1302
69 Ga0307407_10012539 3300031903 Bacteria 4079
70 Ga0307409_100028320 3300031995 Bacteria 3989
71 Ga0307411_10004798 3300032005 Bacteria 6550
72 Ga0373925_0115315 3300037068 Bacteria 2080
73 Ga0436364_0332429 3300037853 Bacteria 23159
74 Ga0436364_1076155 3300037853 Bacteria 4434
75 Ga0436365_1358599 3300039437 Bacteria 1657
76 Ga0436365_1720825 3300039437 Bacteria 2757
77 Ga0436360_0067716 3300039438 Bacteria 1921
78 Ga0436360_0183035 3300039438 Bacteria 1578
79 Ga0436360_0554289 3300039438 Bacteria 1772
80 Ga0436360_0695566 3300039438 Bacteria 1568
81 Ga0436360_0893220 3300039438 Bacteria 5205
82 Ga0436361_0705652 3300039447 Bacteria 23029
83 Ga0439434_0009774 3300042435 Bacteria 2822
84 Ga0495638_0033420 3300046460 Bacteria 3290
85 Ga0495686_0113091 3300047472 Bacteria 1626
86 Ga0496109_0127316 3300048912 Bacteria 2375
87 Ga0501031_0036152 3300049568 Bacteria 3222
88 Ga0501032_0002197 3300049569 Bacteria 15346
89 Ga0501033_0007979 3300049570 Bacteria 8200
90 Ga0501033_0038973 3300049570 Bacteria 3550
91 Ga0501033_0151968 3300049570 Bacteria 1670
92 Ga0501033_0171704 3300049570 Bacteria 1557
93 Ga0501034_0093604 3300049571 Bacteria 3001
94 Ga0501034_0181024 3300049571 Bacteria 2072
95 Ga0501034_0228881 3300049571 Bacteria 1809
96 Ga0501036_0005187 3300049572 Bacteria 10538
97 Ga0501036_0006134 3300049572 Bacteria 9751
98 Ga0501036_0083470 3300049572 Bacteria 2701
99 Ga0501036_0161030 3300049572 Bacteria 1892
100 Ga0501037_0006247 3300049573 Bacteria 8713
101 Ga0501037_0006548 3300049573 Bacteria 8524
102 Ga0501037_0067324 3300049573 Bacteria 2608
103 Ga0501037_0140481 3300049573 Bacteria 1729
104 Ga0501038_0008279 3300049574 Bacteria 9572
105 Ga0501038_0011076 3300049574 Bacteria 8235
106 Ga0501038_0028695 3300049574 Bacteria 4942
107 Ga0501039_0068699 3300049575 Bacteria 2751
108 Ga0501039_0091309 3300049575 Bacteria 2373
109 Ga0501039_0121501 3300049575 Bacteria 2047
110 Ga0501040_0018984 3300049576 Bacteria 4571
111 Ga0501040_0195276 3300049576 Bacteria 1437
112 Ga0501042_0004241 3300049578 Bacteria 9128
113 Ga0501042_0036381 3300049578 Bacteria 3492
114 Ga0501043_0004381 3300049579 Bacteria 11492
115 Ga0501043_0006979 3300049579 Bacteria 8996
116 Ga0501043_0009113 3300049579 Bacteria 7808
117 Ga0501043_0023189 3300049579 Bacteria 4868
118 Ga0501046_0002583 3300049580 Bacteria 16939
119 Ga0501046_0002678 3300049580 Bacteria 16606
120 Ga0501046_0016518 3300049580 Bacteria 6178
121 Ga0501046_0043431 3300049580 Bacteria 3579
122 Ga0501047_0003397 3300049581 Bacteria 15072
123 Ga0501047_0003877 3300049581 Bacteria 14068
124 Ga0501047_0015039 3300049581 Bacteria 7364
125 Ga0501048_0019340 3300049582 Bacteria 4998
126 Ga0501048_0043178 3300049582 Bacteria 3227
127 Ga0501067_0013066 3300049583 Bacteria 4595
128 Ga0501067_0046720 3300049583 Bacteria 2402
129 Ga0501068_0009103 3300049584 Bacteria 5542
130 Ga0501068_0032288 3300049584 Bacteria 3113
131 Ga0501068_0078837 3300049584 Bacteria 2019
132 Ga0501069_0001145 3300049585 Bacteria 12826
133 Ga0501069_0040011 3300049585 Bacteria 2591
134 Ga0501070_0008613 3300049586 Bacteria 8626
135 Ga0501070_0008806 3300049586 Bacteria 8532
136 Ga0501070_0100119 3300049586 Bacteria 2398
137 Ga0501071_0002283 3300049587 Bacteria 11555
138 Ga0501071_0086662 3300049587 Bacteria 2297
139 Ga0501072_0004242 3300049588 Bacteria 10868
140 Ga0501072_0079805 3300049588 Bacteria 2592
141 Ga0501072_0118704 3300049588 Bacteria 2107
142 Ga0501073_0001014 3300049589 Bacteria 20277
143 Ga0501073_0004180 3300049589 Bacteria 10830
144 Ga0501073_0011323 3300049589 Bacteria 6524
145 Ga0501073_0045594 3300049589 Bacteria 3087
146 Ga0501073_0048116 3300049589 Bacteria 2994
147 Ga0501073_0063105 3300049589 Bacteria 2584
148 Ga0501074_0000791 3300049590 Bacteria 20024
149 Ga0501074_0002633 3300049590 Bacteria 12569
150 Ga0501074_0098541 3300049590 Bacteria 2092
151 Ga0501075_0010154 3300049591 Bacteria 6607
152 Ga0501075_0055043 3300049591 Bacteria 2993
153 Ga0501076_0020182 3300049592 Bacteria 5099
154 Ga0501077_0002481 3300049593 Bacteria 11056
155 Ga0501077_0182771 3300049593 Bacteria 1332
156 Ga0501080_0005251 3300049742 Bacteria 11540
157 Ga0501080_0007221 3300049742 Bacteria 10029
158 Ga0501080_0021171 3300049742 Bacteria 6018
159 Ga0501080_0076893 3300049742 Bacteria 3104
160 Ga0501080_0079400 3300049742 Bacteria 3051
161 Ga0501080_0123207 3300049742 Bacteria 2401
162 Ga0501080_0151995 3300049742 Bacteria 2139
163 Ga0501080_0255482 3300049742 Bacteria 1597
164 Ga0501080_0276234 3300049742 Bacteria 1528
165 Ga0501081_0014390 3300049743 Bacteria 5218
166 Ga0501083_0003332 3300049744 Bacteria 11235
167 Ga0501083_0004491 3300049744 Bacteria 9853
168 Ga0501083_0024596 3300049744 Bacteria 4171
169 Ga0501083_0039719 3300049744 Bacteria 3195
170 Ga0501083_0055613 3300049744 Bacteria 2652
171 Ga0501083_0147819 3300049744 Bacteria 1539
172 Ga0501035_0002022 3300049822 Bacteria 20223
173 Ga0501035_0016710 3300049822 Bacteria 6766
174 Ga0501044_0004779 3300049823 Bacteria 15151
175 Ga0501044_0006783 3300049823 Bacteria 12622
176 Ga0501044_0009415 3300049823 Bacteria 10642
177 Ga0501044_0032930 3300049823 Bacteria 5448
178 Ga0501044_0063597 3300049823 Bacteria 3769
179 Ga0501044_0096910 3300049823 Bacteria 2971
180 Ga0501044_0313675 3300049823 Bacteria 1494
181 Ga0501044_0323145 3300049823 Bacteria 1467
182 Ga0501045_0012875 3300049824 Bacteria 5895
183 Ga0501045_0109090 3300049824 Bacteria 2052
184 nmdc:mga05p37_128790_c1 3300050507 Bacteria 3107
185 nmdc:mga09592_70233_c1 3300050508 Bacteria 2971
186 nmdc:mga0qj67_163911_c1 3300050509 Bacteria 1804
187 nmdc:mga06r32_66949_c1 3300050510 Bacteria 3467
188 nmdc:mga08y16_66_c1 3300050511 Bacteria 87732
189 Ga0500578_0027076 3300053086 Bacteria 3679
190 Ga0500646_0008219 3300053090 Bacteria 2669
191 Ga0500641_0002865 3300053096 Bacteria 6116
192 Ga0500555_004565 3300053103 Bacteria 3933
193 Ga0500595_002226 3300053119 Bacteria 9849
194 Ga0500568_0009330 3300053139 Bacteria 4670
195 Ga0500588_0026487 3300053146 Bacteria 1622
196 Ga0500588_0037665 3300053146 Bacteria 1437
197 Ga0500604_0000259 3300053151 Bacteria 15001
198 Ga0500604_0006304 3300053151 Bacteria 3134
199 Ga0500609_001737 3300053731 Bacteria 3159
200 Ga0500609_005638 3300053731 Bacteria 1711
201 Ga0500587_005602 3300053739 Bacteria 1684
202 Ga0500587_006108 3300053739 Bacteria 1608
203 Ga0501084_0007384 3300054114 Bacteria 9059
204 Ga0501084_0108455 3300054114 Bacteria 2332
205 Ga0501084_0142903 3300054114 Bacteria 2015
206 Ga0501084_0252305 3300054114 Bacteria 1489
207 Ga0590071_007844 3300059421 Bacteria 2523
208 Ga0590074_002577 3300059423 Bacteria 2980
209 Ga0590074_008193 3300059423 Bacteria 1742
210 Ga0590077_007258 3300059426 Bacteria 2267
211 Ga0590077_008504 3300059426 Bacteria 2101
212 Ga0587077_010127 3300059493 Bacteria 1449
213 Ga0501082_0003634 3300060353 Bacteria 13475
214 Ga0501082_0024543 3300060353 Bacteria 5197
215 Ga0501082_0032693 3300060353 Bacteria 4487
216 Ga0501082_0119603 3300060353 Bacteria 2283
217 Ga0501082_0222768 3300060353 Bacteria 1641
218 Ga0530510_0003397 3300061734 Bacteria 10950
219 Ga0530510_0197270 3300061734 Bacteria 1495
220 2883293938 2883291878 Bacteria 5894118
221 2883357523 2883354860 Bacteria 5865246
222 Ga0501032_0031047
223 JGI25153J46596_10000035
224 JGI25153J46596_10000148
225 Ga0055536_1006656
226 Ga0058862_11855625
227 Ga0070690_100031109
228 Ga0070674_100018818
229 Ga0070709_10024800
230 Ga0070705_100220669
231 Ga0070706_100171578
232 Ga0070698_100232162
233 Ga0070699_100209100
234 Ga0070679_100020094
235 Ga0070696_100054490
236 Ga0068856_100163128
237 Ga0068861_100038100
238 Ga0068862_100010706
239 Ga0068862_100011495
240 Ga0081538_10017256
241 Ga0081540_1010287
242 Ga0075430_100112367
243 Ga0075431_100007234
244 Ga0075429_100068340
245 Ga0068865_100044645
246 Ga0111539_10000125
247 Ga0114129_10036584
248 Ga0114129_10154431
249 Ga0105237_10426089
250 Ga0105238_10214012
251 Ga0105028_101941
252 Ga0157370_10081062
253 Ga0157372_10295433
254 Ga0163163_10275691
255 Ga0163163_10308270
256 Ga0157380_10051225
257 Ga0206352_10246224
258 Ga0224712_10108877
259 Ga0209148_1000690
260 Ga0209148_1002004
261 Ga0209455_1000236
262 Ga0209455_1000250
263 Ga0209675_1001777
264 Ga0209676_1000197
265 Ga0209676_1008074
266 Ga0209758_1000060
267 Ga0209758_1000169
268 Ga0209758_1015933
269 Ga0209050_1011530
270 Ga0209050_1022916
271 Ga0207426_1011559
272 Ga0209257_1003853
273 Ga0207671_10219224
274 Ga0207660_10058132
275 Ga0207669_10018530
276 Ga0207704_10040534
277 Ga0207675_100066968
278 Ga0207428_10000078
279 Ga0268265_10026726
280 Ga0268265_10072340
281 Ga0265340_10038030
282 Ga0265339_10014490
283 Ga0265331_10014180
284 Ga0265327_10001060
285 Ga0307408_100087075
286 Ga0265313_10097263
287 Ga0307508_10013858
288 Ga0307516_10190844
289 Ga0307413_10255687
290 Ga0307407_10012539
291 Ga0307409_100028320
292 Ga0307411_10004798
293 Ga0373925_0115315
294 Ga0436364_0332429
295 Ga0436364_1076155
296 Ga0436365_1358599
297 Ga0436365_1720825
298 Ga0436360_0067716
299 Ga0436360_0183035
300 Ga0436360_0554289
301 Ga0436360_0695566
302 Ga0436360_0893220
303 Ga0436361_0705652
304 Ga0439434_0009774
305 Ga0495638_0033420
306 Ga0495686_0113091
307 Ga0496109_0127316
308 Ga0501031_0036152
309 Ga0501032_0002197
310 Ga0501033_0007979
311 Ga0501033_0038973
312 Ga0501033_0151968
313 Ga0501033_0171704
314 Ga0501034_0093604
315 Ga0501034_0181024
316 Ga0501034_0228881
317 Ga0501036_0005187
318 Ga0501036_0006134
319 Ga0501036_0083470
320 Ga0501036_0161030
321 Ga0501037_0006247
322 Ga0501037_0006548
323 Ga0501037_0067324
324 Ga0501037_0140481
325 Ga0501038_0008279
326 Ga0501038_0011076
327 Ga0501038_0028695
328 Ga0501039_0068699
329 Ga0501039_0091309
330 Ga0501039_0121501
331 Ga0501040_0018984
332 Ga0501040_0195276
333 Ga0501042_0004241
334 Ga0501042_0036381
335 Ga0501043_0004381
336 Ga0501043_0006979
337 Ga0501043_0009113
338 Ga0501043_0023189
339 Ga0501046_0002583
340 Ga0501046_0002678
341 Ga0501046_0016518
342 Ga0501046_0043431
343 Ga0501047_0003397
344 Ga0501047_0003877
345 Ga0501047_0015039
346 Ga0501048_0019340
347 Ga0501048_0043178
348 Ga0501067_0013066
349 Ga0501067_0046720
350 Ga0501068_0009103
351 Ga0501068_0032288
352 Ga0501068_0078837
353 Ga0501069_0001145
354 Ga0501069_0040011
355 Ga0501070_0008613
356 Ga0501070_0008806
357 Ga0501070_0100119
358 Ga0501071_0002283
359 Ga0501071_0086662
360 Ga0501072_0004242
361 Ga0501072_0079805
362 Ga0501072_0118704
363 Ga0501073_0001014
364 Ga0501073_0004180
365 Ga0501073_0011323
366 Ga0501073_0045594
367 Ga0501073_0048116
368 Ga0501073_0063105
369 Ga0501074_0000791
370 Ga0501074_0002633
371 Ga0501074_0098541
372 Ga0501075_0010154
373 Ga0501075_0055043
374 Ga0501076_0020182
375 Ga0501077_0002481
376 Ga0501077_0182771
377 Ga0501080_0005251
378 Ga0501080_0007221
379 Ga0501080_0021171
380 Ga0501080_0076893
381 Ga0501080_0079400
382 Ga0501080_0123207
383 Ga0501080_0151995
384 Ga0501080_0255482
385 Ga0501080_0276234
386 Ga0501081_0014390
387 Ga0501083_0003332
388 Ga0501083_0004491
389 Ga0501083_0024596
390 Ga0501083_0039719
391 Ga0501083_0055613
392 Ga0501083_0147819
393 Ga0501035_0002022
394 Ga0501035_0016710
395 Ga0501044_0004779
396 Ga0501044_0006783
397 Ga0501044_0009415
398 Ga0501044_0032930
399 Ga0501044_0063597
400 Ga0501044_0096910
401 Ga0501044_0313675
402 Ga0501044_0323145
403 Ga0501045_0012875
404 Ga0501045_0109090
405 nmdc:mga05p37_128790_c1
406 nmdc:mga09592_70233_c1
407 nmdc:mga0qj67_163911_c1
408 nmdc:mga06r32_66949_c1
409 nmdc:mga08y16_66_c1
410 Ga0500578_0027076
411 Ga0500646_0008219
412 Ga0500641_0002865
413 Ga0500555_004565
414 Ga0500595_002226
415 Ga0500568_0009330
416 Ga0500588_0026487
417 Ga0500588_0037665
418 Ga0500604_0000259
419 Ga0500604_0006304
420 Ga0500609_001737
421 Ga0500609_005638
422 Ga0500587_005602
423 Ga0500587_006108
424 Ga0501084_0007384
425 Ga0501084_0108455
426 Ga0501084_0142903
427 Ga0501084_0252305
428 Ga0590071_007844
429 Ga0590074_002577
430 Ga0590074_008193
431 Ga0590077_007258
432 Ga0590077_008504
433 Ga0587077_010127
434 Ga0501082_0003634
435 Ga0501082_0024543
436 Ga0501082_0032693
437 Ga0501082_0119603
438 Ga0501082_0222768
439 Ga0530510_0003397
440 Ga0530510_0197270
441 2883293938
442 2883357523

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13458

Peripla_BP_6

Periplasmic binding protein

71

406

0.91

PF01094

ANF_receptor

Receptor family ligand binding region

91

410

0.87

PF13433

Peripla_BP_5

Periplasmic binding protein domain

72

402

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
4n0q-assembly1.cif.gz_A crystal structure of an abc transporter, substrate-binding protein from brucella melitensis 16m in complex with l-leucine using a crystal grown in a crystal former (microlytic) 0.975 30 375
4n0q-assembly1.cif.gz_A crystal structure of an abc transporter, substrate-binding protein from brucella melitensis 16m in complex with l-leucine using a crystal grown in a crystal former (microlytic) 0.9722 30 375
3ipc-assembly1.cif.gz_A structure of atu2422-gaba f77a mutant receptor in complex with leucine 0.9702 29 375
3ip9-assembly1.cif.gz_A structure of atu2422-gaba receptor in complex with gaba 0.9695 29 375
1z18-assembly1.cif.gz_A error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.9648 29 376
ID Description Score Start End Superfamily
3ipcA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.991 154 278 3.40.50.2300
af_P04816_25_358_3.40.190.10 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9753 30 365 3.40.190.10
3ipcA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9747 29 358 3.40.50.2300
4n0qA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9719 154 278 3.40.50.2300
af_P04816_25_358_3.40.190.10 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9696 30 365 3.40.190.10
ID Description Score Start End GO Terms
AF-A0A528G7S6-F1-model_v4 Branched-chain amino acid ABC transporter substrate-binding protein 0.9907 30 136 GO:0006865
AF-A0A164HVN9-F1-model_v4 Leucine-binding protein domain-containing protein 0.9854 60 219
AF-A0A3S4DVY1-F1-model_v4 deleted 0.973 24 283
AF-A0A0P9HIK6-F1-model_v4 Leucine ABC transporter subunit substrate-binding protein LivK 0.9718 24 377 GO:0006865
AF-A0A447LWP6-F1-model_v4 deleted 0.9705 50 339

Map