F338201

General Info

Members Datasets Scaffolds Average Seq Length
225 151 450 208

Family's Representative Sequence

Representative Sequence 3300049459|Ga0495678_088018|Ga0495678_088018_316_1074
Length 252
Sequence MAYELPPLPYAYNALEPHFDARTMEIHHTKHHQTYVTSLNTAVADAGIADQPFEALIANIDALPAKAQTAVRNHGGGHANHSLFWTVLSATGGGQPTGKLADAINADLGGYDQFKEQFIKAAQTRFGSGWAWLTVGKDGKLLVENSANQDSPLMGAFVGLSGGTPILGLDVWEHAYYLNYQNRRPDYIQAFFNIINWDEVARRYDEATKYAASNPWGMPAITPAAHFFIPAPLSCRHRATPAIAATAACCTA

Samples

Sample ID Description Type Environment
1 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
4 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
5 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
17 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
18 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
26 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
27 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
28 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
29 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
30 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
31 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
32 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
33 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
37 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
38 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
39 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
40 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
41 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
45 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
46 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
47 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
48 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
49 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
50 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
51 3300020075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
52 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
53 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
54 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
68 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
72 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
73 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
74 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
75 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
76 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
77 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
78 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
79 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
80 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
81 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
82 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
83 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
84 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
85 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
86 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
87 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
88 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
89 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
90 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
91 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
92 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
93 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
94 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
95 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
96 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
97 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
98 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
99 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
100 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
101 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
102 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
103 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
104 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
105 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
106 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
107 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
108 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
109 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
110 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
111 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
112 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
113 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
114 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
115 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
116 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
117 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
118 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
119 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
120 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
121 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
124 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
125 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
126 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
127 2576861471 Stenotrophomonas rhizophila DSM 14405 Isolate Rhizosphere
128 2747842428 Stenotrophomonas sp. WCS2014-113 Isolate Unclassified
129 2765235840 Stenotrophomonas maltophilia AA1 Isolate Unclassified
130 2816332141 Stenotrophomonas muris 1190 (v2) (version 2) Isolate Unclassified
131 2842391507 Stenotrophomonas maltophilia SEMIA 4027 Isolate Nodule
132 2852649853 Stenotrophomonas sp. JAI102 Isolate Rhizosphere
133 2857442823 Stenotrophomonas sp. R-74235 Isolate Unclassified
134 2857553236 Duganella sp. R-74557 Isolate Unclassified
135 2858950400 Achromobacter sp. K91 Isolate Unclassified
136 2874220319 Stenotrophomonas maltophilia PS5 Isolate Unclassified
137 2904479285 Comamonas sediminis 4487 Isolate Rhizosphere
138 2919089067 Stenotrophomonas sp. 1337 Isolate Rhizosphere
139 2919134579 Stenotrophomonas geniculata 1733 Isolate Rhizosphere
140 2919476304 Duganella sp. 3397 Isolate Unclassified
141 2923525760 Aeromonas caviae SLBN-129 Isolate Rhizosphere
142 2928496128 Stenotrophomonas indicatrix 1163 Isolate Unclassified
143 2931380184 Stenotrophomonas sp. DR822 Isolate Rhizosphere
144 2937610967 Stenotrophomonas maltophilia EP20 Isolate Unclassified
145 2939622612 Stenotrophomonas sp. 2619 Isolate Rhizosphere
146 2939626828 Stenotrophomonas sp. 2694 Isolate Rhizosphere
147 2941475908 Stenotrophomonas rhizophila 2680 Isolate Rhizosphere
148 2952252522 Salinicola sp. DM10 Isolate Unclassified
149 2961047084 Stenotrophomonas maltophilia EP5 Isolate Unclassified
150 2961064222 Stenotrophomonas maltophilia EP13 Isolate Unclassified
151 3007419365 Pseudomonas vanderleydeniana RW8P3 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 87.56
Metatranscriptomes 1.33
Isolates 11.11

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.56
Nodule 1.33
Rhizoplane 3.56
Rhizosphere 58.67
Stem 0
Stem Tuber 0
Unclassified 1.78

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495678_088018 3300049459 Bacteria 1100
2 rootH2_10011753 3300003320 Bacteria 8951
3 Ga0055536_1000962 3300003781 Bacteria 18459
4 Ga0055536_1004298 3300003781 Bacteria 7334
5 Ga0058692_1000009 3300003856 Bacteria 349545
6 Ga0065714_10203008 3300005288 Bacteria 889
7 Ga0065712_10004605 3300005290 Bacteria 3169
8 Ga0070670_100038503 3300005331 Bacteria 4112
9 Ga0068869_100038419 3300005334 Bacteria 3412
10 Ga0070660_100623832 3300005339 Bacteria 902
11 Ga0070689_100093154 3300005340 Bacteria 2377
12 Ga0070689_100646059 3300005340 Bacteria 920
13 Ga0070669_100000092 3300005353 Bacteria 87728
14 Ga0070669_100154021 3300005353 Bacteria 1781
15 Ga0070675_100118227 3300005354 Bacteria 2250
16 Ga0070674_100088777 3300005356 Bacteria 2226
17 Ga0070688_100141337 3300005365 Bacteria 1635
18 Ga0070688_100169429 3300005365 Bacteria 1506
19 Ga0070681_10142410 3300005458 Bacteria 2327
20 Ga0068867_100020339 3300005459 Bacteria 4730
21 Ga0070685_10008772 3300005466 Bacteria 5206
22 Ga0070707_100221636 3300005468 Bacteria 1842
23 Ga0070698_100404891 3300005471 Bacteria 1298
24 Ga0070704_100755615 3300005549 Bacteria 866
25 Ga0068864_100211365 3300005618 Bacteria 1786
26 Ga0068870_10640358 3300005840 Bacteria 727
27 Ga0068860_100011360 3300005843 Bacteria 8776
28 Ga0068862_100001931 3300005844 Bacteria 18819
29 Ga0081539_10132729 3300005985 Bacteria 1221
30 Ga0075365_10371067 3300006038 Bacteria 1009
31 Ga0075434_100027351 3300006871 Bacteria 5599
32 Ga0075429_100226730 3300006880 Bacteria 1637
33 Ga0075436_100435029 3300006914 Bacteria 954
34 Ga0079104_1004878 3300006946 Bacteria 5553
35 Ga0075435_100604715 3300007076 Bacteria 951
36 Ga0105251_10005270 3300009011 Bacteria 8508
37 Ga0105244_10012968 3300009036 Bacteria 4899
38 Ga0105240_11307456 3300009093 Bacteria 765
39 Ga0114129_10112117 3300009147 Bacteria 3762
40 Ga0114129_10130044 3300009147 Bacteria 3459
41 Ga0105243_10011293 3300009148 Bacteria 6757
42 Ga0105242_10065107 3300009176 Bacteria 3006
43 Ga0105237_10458679 3300009545 Bacteria 1280
44 Ga0105249_10392371 3300009553 Bacteria 1416
45 Ga0157373_10411955 3300013100 Bacteria 969
46 Ga0157371_10000026 3300013102 Bacteria 274703
47 Ga0157371_10000487 3300013102 Bacteria 48309
48 Ga0157371_10002106 3300013102 Bacteria 19399
49 Ga0157371_10081758 3300013102 Bacteria 2287
50 Ga0157370_10017120 3300013104 Bacteria 7318
51 Ga0157369_10177970 3300013105 Bacteria 2239
52 Ga0182008_10000143 3300014497 Bacteria 55118
53 Ga0182008_10035801 3300014497 Bacteria 2484
54 Ga0157377_10478455 3300014745 Bacteria 866
55 Ga0182006_1000054 3300015261 Bacteria 174021
56 Ga0182006_1015936 3300015261 Bacteria 3212
57 Ga0182006_1017221 3300015261 Bacteria 3072
58 Ga0182007_10000043 3300015262 Bacteria 107693
59 Ga0182005_1000012 3300015265 Bacteria 396944
60 Ga0182005_1000267 3300015265 Bacteria 32953
61 Ga0163161_10004041 3300017792 Bacteria 10264
62 Ga0163161_10063363 3300017792 Bacteria 2694
63 Ga0206356_10522772 3300020070 Bacteria 926
64 Ga0206349_1479246 3300020075 Bacteria 907
65 Ga0213875_10003610 3300021388 Bacteria 8755
66 Ga0224712_10051947 3300022467 Bacteria 1598
67 Ga0209676_1000075 3300025292 Bacteria 303609
68 Ga0209676_1040452 3300025292 Bacteria 1312
69 Ga0209050_1001455 3300025298 Bacteria 25372
70 Ga0209050_1014050 3300025298 Bacteria 3488
71 Ga0207655_1000021 3300025728 Bacteria 518596
72 Ga0207713_1004963 3300025735 Bacteria 8504
73 Ga0207662_10160622 3300025918 Bacteria 1435
74 Ga0207681_10000078 3300025923 Bacteria 87730
75 Ga0207650_10085615 3300025925 Bacteria 2398
76 Ga0207659_10644822 3300025926 Bacteria 905
77 Ga0207709_10001313 3300025935 Bacteria 17674
78 Ga0207648_10023542 3300026089 Bacteria 5515
79 Ga0207676_10187070 3300026095 Bacteria 1819
80 Ga0207674_10002008 3300026116 Bacteria 25832
81 Ga0207683_10092104 3300026121 Bacteria 2701
82 Ga0209281_1004974 3300027111 Bacteria 3808
83 Ga0209371_1000023 3300027312 Bacteria 519553
84 Ga0268265_10001137 3300028380 Bacteria 23495
85 Ga0268264_10002316 3300028381 Bacteria 16848
86 Ga0268256_1000023 3300030500 Bacteria 519631
87 Ga0265328_10184533 3300031239 Bacteria 789
88 Ga0265331_10124136 3300031250 Unclassified 1180
89 Ga0265331_10244778 3300031250 Bacteria 804
90 Ga0265316_10021797 3300031344 Bacteria 5417
91 Ga0307513_10404834 3300031456 Bacteria 1098
92 Ga0307408_100112887 3300031548 Bacteria 2091
93 Ga0307412_10000649 3300031911 Bacteria 20174
94 Ga0307412_10494527 3300031911 Bacteria 1017
95 Ga0307416_100424414 3300032002 Bacteria 1375
96 Ga0307414_10027510 3300032004 Bacteria 3676
97 Ga0307414_10038753 3300032004 Bacteria 3203
98 Ga0307414_10368464 3300032004 Bacteria 1238
99 Ga0436362_0425313 3300039453 Bacteria 19513
100 Ga0439439_0016949 3300041406 Unclassified 1788
101 Ga0451807_1304781 3300041486 Bacteria 1064
102 Ga0451807_1342983 3300041486 Bacteria 1621
103 Ga0451841_0338815 3300041498 Bacteria 1871
104 Ga0451843_0357145 3300041509 Bacteria 1135
105 Ga0439462_0103165 3300042015 Bacteria 787
106 Ga0450911_000345 3300042115 Bacteria 16071
107 Ga0451577_0053393 3300042876 Bacteria 3607
108 Ga0466963_0550925 3300044694 Bacteria 814
109 Ga0466964_0162226 3300044706 Bacteria 1046
110 Ga0453684_0808162 3300044712 Bacteria 1011
111 Ga0466968_0006190 3300044735 Bacteria 4499
112 Ga0466958_0060170 3300045836 Unclassified 2312
113 Ga0466967_0000113 3300045976 Bacteria 29821
114 Ga0495627_000007 3300046453 Bacteria 575915
115 Ga0495627_001655 3300046453 Bacteria 12350
116 Ga0495638_0001184 3300046460 Bacteria 25009
117 Ga0495644_0007665 3300046523 Bacteria 4164
118 Ga0495663_0000747 3300046525 Bacteria 11157
119 Ga0495663_0020531 3300046525 Bacteria 1896
120 Ga0495609_0000055 3300046538 Bacteria 146808
121 Ga0495609_0034694 3300046538 Bacteria 2286
122 Ga0495633_0116782 3300046558 Bacteria 1236
123 Ga0495633_0170669 3300046558 Bacteria 1002
124 Ga0495660_0000091 3300046810 Bacteria 98065
125 Ga0495660_0000399 3300046810 Bacteria 37448
126 Ga0495660_0037478 3300046810 Bacteria 2700
127 Ga0495672_0021002 3300047320 Bacteria 4266
128 Ga0495681_0001750 3300047470 Bacteria 16011
129 Ga0495681_0025271 3300047470 Bacteria 3109
130 Ga0495686_0000062 3300047472 Bacteria 235234
131 Ga0496101_0584378 3300048904 Bacteria 883
132 Ga0496104_0101407 3300048907 Bacteria 2756
133 Ga0496105_0153623 3300048908 Bacteria 1891
134 Ga0496111_0229252 3300048914 Bacteria 1380
135 Ga0496112_0468491 3300048915 Unclassified 1197
136 Ga0496113_0024598 3300048916 Bacteria 4283
137 Ga0496116_0000403 3300048919 Bacteria 62168
138 Ga0496116_0006354 3300048919 Bacteria 10750
139 Ga0496116_0012577 3300048919 Bacteria 6904
140 Ga0496116_0022355 3300048919 Bacteria 4740
141 Ga0496116_0086939 3300048919 Bacteria 1915
142 Ga0496116_0186816 3300048919 Bacteria 1102
143 Ga0496116_0373777 3300048919 Bacteria 642
144 Ga0496117_0001196 3300048920 Bacteria 39067
145 Ga0496117_0001459 3300048920 Bacteria 34088
146 Ga0496117_0002630 3300048920 Bacteria 22272
147 Ga0496117_0078519 3300048920 Bacteria 2179
148 Ga0496117_0081986 3300048920 Bacteria 2114
149 Ga0496118_0000528 3300048921 Bacteria 62711
150 Ga0496118_0001268 3300048921 Bacteria 38749
151 Ga0496118_0003436 3300048921 Bacteria 19937
152 Ga0496118_0067270 3300048921 Bacteria 2610
153 Ga0496118_0068483 3300048921 Bacteria 2577
154 Ga0496118_0127552 3300048921 Bacteria 1641
155 Ga0496119_0000659 3300048922 Bacteria 46235
156 Ga0496120_0000217 3300048923 Bacteria 99402
157 Ga0496120_0058754 3300048923 Bacteria 2159
158 Ga0496121_0003760 3300048924 Bacteria 21241
159 Ga0496121_0004988 3300048924 Bacteria 17381
160 Ga0496121_0031453 3300048924 Bacteria 4848
161 Ga0496121_0038783 3300048924 Bacteria 4210
162 Ga0496121_0043365 3300048924 Bacteria 3897
163 Ga0496122_0004150 3300048925 Bacteria 18284
164 Ga0496122_0005840 3300048925 Bacteria 14451
165 Ga0496122_0009981 3300048925 Bacteria 9885
166 Ga0496122_0145911 3300048925 Bacteria 1470
167 Ga0496123_0006966 3300048926 Bacteria 10790
168 Ga0496123_0009585 3300048926 Bacteria 8697
169 Ga0496123_0022329 3300048926 Bacteria 4881
170 Ga0496123_0055183 3300048926 Bacteria 2608
171 Ga0496123_0128811 3300048926 Bacteria 1407
172 Ga0496124_0004965 3300048927 Bacteria 15218
173 Ga0496124_0006943 3300048927 Bacteria 12167
174 Ga0496124_0010043 3300048927 Bacteria 9658
175 Ga0496124_0014304 3300048927 Bacteria 7679
176 Ga0496124_0017587 3300048927 Bacteria 6733
177 Ga0496124_0018560 3300048927 Bacteria 6510
178 Ga0496124_0025450 3300048927 Bacteria 5359
179 Ga0496124_0066901 3300048927 Bacteria 2991
180 Ga0496124_0149591 3300048927 Bacteria 1833
181 Ga0496124_0423982 3300048927 Bacteria 916
182 Ga0496125_0003885 3300048928 Bacteria 17661
183 Ga0496125_0004325 3300048928 Bacteria 16486
184 Ga0496125_0008711 3300048928 Bacteria 10557
185 Ga0496125_0045518 3300048928 Bacteria 3691
186 Ga0496125_0049176 3300048928 Bacteria 3506
187 Ga0496126_0005761 3300048929 Bacteria 14012
188 Ga0496126_0018758 3300048929 Bacteria 6841
189 Ga0496126_0091435 3300048929 Bacteria 2676
190 Ga0496126_0112081 3300048929 Bacteria 2375
191 Ga0496126_0164780 3300048929 Bacteria 1892
192 Ga0495678_000004 3300049459 Bacteria 532920
193 Ga0501031_0100516 3300049568 Bacteria 1887
194 Ga0501033_0332662 3300049570 Bacteria 1066
195 Ga0501034_0152325 3300049571 Bacteria 2288
196 nmdc:mga0yw44_340172_c1 3300050492 Bacteria 1009
197 nmdc:mga05p37_218047_c1 3300050507 Bacteria 2304
198 nmdc:mga05p37_479809_c1 3300050507 Bacteria 1432
199 nmdc:mga05p37_513743_c1 3300050507 Bacteria 1372
200 nmdc:mga0a205_181122_c1 3300050515 Bacteria 2001
201 2578458743 2576861471 Bacteria 4648976
202 2747948522 2747842428 Bacteria 4689383
203 2765579333 2765235840 Bacteria 4663337
204 2816517442 2816332141 Bacteria 4436036
205 2842391577 2842391507 Bacteria 4486072
206 2852651099 2852649853 Bacteria 4036942
207 2857445249 2857442823 Bacteria 4562550
208 2857554625 2857553236 Bacteria 6166726
209 2858954984 2858950400 Bacteria 6783797
210 2874222020 2874220319 Bacteria 4594709
211 2904483200 2904479285 Bacteria 5073931
212 2919093211 2919089067 Bacteria 4560942
213 2919135696 2919134579 Bacteria 4480386
214 2919479991 2919476304 Bacteria 5888696
215 2923526839 2923525760 Bacteria 4472324
216 2928500337 2928496128 Bacteria 4631123
217 2931380390 2931380184 Bacteria 4455911
218 2937612855 2937610967 Bacteria 4618818
219 2939622917 2939622612 Bacteria 4698046
220 2939626958 2939626828 Bacteria 4695272
221 2941477955 2941475908 Bacteria 4145589
222 2952255276 2952252522 Bacteria 4171745
223 2961048787 2961047084 Bacteria 4594415
224 2961067688 2961064222 Bacteria 4749990
225 3007425070 3007419365 Bacteria 7026924
226 Ga0495678_088018
227 rootH2_10011753
228 Ga0055536_1000962
229 Ga0055536_1004298
230 Ga0058692_1000009
231 Ga0065714_10203008
232 Ga0065712_10004605
233 Ga0070670_100038503
234 Ga0068869_100038419
235 Ga0070660_100623832
236 Ga0070689_100093154
237 Ga0070689_100646059
238 Ga0070669_100000092
239 Ga0070669_100154021
240 Ga0070675_100118227
241 Ga0070674_100088777
242 Ga0070688_100141337
243 Ga0070688_100169429
244 Ga0070681_10142410
245 Ga0068867_100020339
246 Ga0070685_10008772
247 Ga0070707_100221636
248 Ga0070698_100404891
249 Ga0070704_100755615
250 Ga0068864_100211365
251 Ga0068870_10640358
252 Ga0068860_100011360
253 Ga0068862_100001931
254 Ga0081539_10132729
255 Ga0075365_10371067
256 Ga0075434_100027351
257 Ga0075429_100226730
258 Ga0075436_100435029
259 Ga0079104_1004878
260 Ga0075435_100604715
261 Ga0105251_10005270
262 Ga0105244_10012968
263 Ga0105240_11307456
264 Ga0114129_10112117
265 Ga0114129_10130044
266 Ga0105243_10011293
267 Ga0105242_10065107
268 Ga0105237_10458679
269 Ga0105249_10392371
270 Ga0157373_10411955
271 Ga0157371_10000026
272 Ga0157371_10000487
273 Ga0157371_10002106
274 Ga0157371_10081758
275 Ga0157370_10017120
276 Ga0157369_10177970
277 Ga0182008_10000143
278 Ga0182008_10035801
279 Ga0157377_10478455
280 Ga0182006_1000054
281 Ga0182006_1015936
282 Ga0182006_1017221
283 Ga0182007_10000043
284 Ga0182005_1000012
285 Ga0182005_1000267
286 Ga0163161_10004041
287 Ga0163161_10063363
288 Ga0206356_10522772
289 Ga0206349_1479246
290 Ga0213875_10003610
291 Ga0224712_10051947
292 Ga0209676_1000075
293 Ga0209676_1040452
294 Ga0209050_1001455
295 Ga0209050_1014050
296 Ga0207655_1000021
297 Ga0207713_1004963
298 Ga0207662_10160622
299 Ga0207681_10000078
300 Ga0207650_10085615
301 Ga0207659_10644822
302 Ga0207709_10001313
303 Ga0207648_10023542
304 Ga0207676_10187070
305 Ga0207674_10002008
306 Ga0207683_10092104
307 Ga0209281_1004974
308 Ga0209371_1000023
309 Ga0268265_10001137
310 Ga0268264_10002316
311 Ga0268256_1000023
312 Ga0265328_10184533
313 Ga0265331_10124136
314 Ga0265331_10244778
315 Ga0265316_10021797
316 Ga0307513_10404834
317 Ga0307408_100112887
318 Ga0307412_10000649
319 Ga0307412_10494527
320 Ga0307416_100424414
321 Ga0307414_10027510
322 Ga0307414_10038753
323 Ga0307414_10368464
324 Ga0436362_0425313
325 Ga0439439_0016949
326 Ga0451807_1304781
327 Ga0451807_1342983
328 Ga0451841_0338815
329 Ga0451843_0357145
330 Ga0439462_0103165
331 Ga0450911_000345
332 Ga0451577_0053393
333 Ga0466963_0550925
334 Ga0466964_0162226
335 Ga0453684_0808162
336 Ga0466968_0006190
337 Ga0466958_0060170
338 Ga0466967_0000113
339 Ga0495627_000007
340 Ga0495627_001655
341 Ga0495638_0001184
342 Ga0495644_0007665
343 Ga0495663_0000747
344 Ga0495663_0020531
345 Ga0495609_0000055
346 Ga0495609_0034694
347 Ga0495633_0116782
348 Ga0495633_0170669
349 Ga0495660_0000091
350 Ga0495660_0000399
351 Ga0495660_0037478
352 Ga0495672_0021002
353 Ga0495681_0001750
354 Ga0495681_0025271
355 Ga0495686_0000062
356 Ga0496101_0584378
357 Ga0496104_0101407
358 Ga0496105_0153623
359 Ga0496111_0229252
360 Ga0496112_0468491
361 Ga0496113_0024598
362 Ga0496116_0000403
363 Ga0496116_0006354
364 Ga0496116_0012577
365 Ga0496116_0022355
366 Ga0496116_0086939
367 Ga0496116_0186816
368 Ga0496116_0373777
369 Ga0496117_0001196
370 Ga0496117_0001459
371 Ga0496117_0002630
372 Ga0496117_0078519
373 Ga0496117_0081986
374 Ga0496118_0000528
375 Ga0496118_0001268
376 Ga0496118_0003436
377 Ga0496118_0067270
378 Ga0496118_0068483
379 Ga0496118_0127552
380 Ga0496119_0000659
381 Ga0496120_0000217
382 Ga0496120_0058754
383 Ga0496121_0003760
384 Ga0496121_0004988
385 Ga0496121_0031453
386 Ga0496121_0038783
387 Ga0496121_0043365
388 Ga0496122_0004150
389 Ga0496122_0005840
390 Ga0496122_0009981
391 Ga0496122_0145911
392 Ga0496123_0006966
393 Ga0496123_0009585
394 Ga0496123_0022329
395 Ga0496123_0055183
396 Ga0496123_0128811
397 Ga0496124_0004965
398 Ga0496124_0006943
399 Ga0496124_0010043
400 Ga0496124_0014304
401 Ga0496124_0017587
402 Ga0496124_0018560
403 Ga0496124_0025450
404 Ga0496124_0066901
405 Ga0496124_0149591
406 Ga0496124_0423982
407 Ga0496125_0003885
408 Ga0496125_0004325
409 Ga0496125_0008711
410 Ga0496125_0045518
411 Ga0496125_0049176
412 Ga0496126_0005761
413 Ga0496126_0018758
414 Ga0496126_0091435
415 Ga0496126_0112081
416 Ga0496126_0164780
417 Ga0495678_000004
418 Ga0501031_0100516
419 Ga0501033_0332662
420 Ga0501034_0152325
421 nmdc:mga0yw44_340172_c1
422 nmdc:mga05p37_218047_c1
423 nmdc:mga05p37_479809_c1
424 nmdc:mga05p37_513743_c1
425 nmdc:mga0a205_181122_c1
426 2578458743
427 2747948522
428 2765579333
429 2816517442
430 2842391577
431 2852651099
432 2857445249
433 2857554625
434 2858954984
435 2874222020
436 2904483200
437 2919093211
438 2919135696
439 2919479991
440 2923526839
441 2928500337
442 2931380390
443 2937612855
444 2939622917
445 2939626958
446 2941477955
447 2952255276
448 2961048787
449 2961067688
450 3007425070

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00081

Sod_Fe_N

Iron/manganese superoxide dismutases, alpha-hairpin domain

2

89

0.98

PF02777

Sod_Fe_C

Iron/manganese superoxide dismutases, C-terminal domain

96

203

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
2cdy-assembly2.cif.gz_B manganese superoxide dismutase (mn-sod) from deinococcus radiodurans 0.9678 3 206
4yip-assembly2.cif.gz_C x-ray structure of the iron/manganese cambialistic superoxide dismutase from streptococcus mutans 0.9659 2 206
2rcv-assembly3.cif.gz_D crystal structure of the bacillus subtilis superoxide dismutase 0.9656 2 205
4yio-assembly1.cif.gz_B x-ray structure of the iron/manganese cambialistic superoxide dismutase from streptococcus thermophilus 0.9651 2 206
4jyy-assembly1.cif.gz_A crystal structure of the azide and iron substituted clostrium difficile sod2 complex 0.9639 2 205
ID Description Score Start End Superfamily
2rcvD01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Fe,Mn superoxide dismutase (SOD) domain 0.9811 20 86 1.10.287.990
2cdyB01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Fe,Mn superoxide dismutase (SOD) domain 0.9677 20 86 1.10.287.990
2aw9A01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Fe,Mn superoxide dismutase (SOD) domain 0.9665 20 89 1.10.287.990
2aw9B01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Fe,Mn superoxide dismutase (SOD) domain 0.9662 20 89 1.10.287.990
2cdyD01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Fe,Mn superoxide dismutase (SOD) domain 0.9631 20 89 1.10.287.990
ID Description Score Start End GO Terms
AF-A0A6I3XRL5-F1-model_v4 Superoxide dismutase (EC 1.15.1.1) 0.9814 1 207 GO:0004784
GO:0005737
GO:0046872
AF-A0A4P8HKA5-F1-model_v4 Superoxide dismutase (EC 1.15.1.1) 0.9809 1 206 GO:0004784
GO:0005737
GO:0046872
AF-A0A455U5M8-F1-model_v4 Superoxide dismutase (EC 1.15.1.1) 0.975 1 133 GO:0004784
GO:0005737
GO:0046872
AF-A0A6I3XRL5-F1-model_v4 Superoxide dismutase (EC 1.15.1.1) 0.9721 1 207 GO:0004784
GO:0005737
GO:0046872
AF-A0A833HHC4-F1-model_v4 Superoxide dismutase (EC 1.15.1.1) 0.9715 3 207 GO:0004784
GO:0005737
GO:0046872

Map